Query psy39
Match_columns 195
No_of_seqs 103 out of 1017
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 20:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy39.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/39hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vq8_I 50S ribosomal protein L 100.0 3.4E-63 1.2E-67 405.7 7.9 151 20-173 3-161 (162)
2 3j21_H 50S ribosomal protein L 100.0 5.2E-62 1.8E-66 399.4 4.4 151 20-173 4-163 (164)
3 2ftc_G L11MT, MRP-L11, 39S rib 100.0 6.7E-60 2.3E-64 380.3 15.9 138 20-157 6-145 (145)
4 1mms_A Protein (ribosomal prot 100.0 4.9E-60 1.7E-64 379.2 15.0 137 18-157 3-140 (140)
5 3egv_B 50S ribosomal protein L 100.0 1.9E-58 6.4E-63 372.2 6.7 137 18-157 2-139 (146)
6 3bbo_K Ribosomal protein L11; 100.0 1.3E-56 4.6E-61 381.0 14.5 141 16-159 73-214 (224)
7 3r8s_I 50S ribosomal protein L 100.0 1.3E-60 4.6E-65 382.8 -11.1 139 17-157 2-141 (141)
8 2zkr_i 60S ribosomal protein L 100.0 1.8E-57 6.3E-62 372.8 7.1 144 20-169 11-156 (165)
9 3iz5_J 60S ribosomal protein L 100.0 1.2E-56 4E-61 368.2 11.5 143 18-165 9-162 (166)
10 1wib_A 60S ribosomal protein L 100.0 1.1E-33 3.7E-38 212.3 0.8 77 19-98 16-92 (92)
11 3cjs_B 50S ribosomal protein L 100.0 3.1E-32 1.1E-36 196.3 6.3 70 17-87 2-72 (72)
12 1hc8_A Ribosomal protein L11; 100.0 4.6E-32 1.6E-36 197.2 6.6 76 80-157 1-76 (76)
13 1qa6_A Ribosomal protein L11; 99.9 1.3E-28 4.5E-33 175.1 6.3 67 85-153 1-67 (67)
14 3bk6_A PH stomatin; archaea, t 67.0 3.9 0.00013 32.2 3.1 27 146-172 95-126 (188)
15 2k87_A Non-structural protein 36.2 42 0.0014 25.6 4.2 35 49-84 30-64 (116)
16 2wwq_5 50S ribosomal protein L 21.1 96 0.0033 25.8 4.2 12 35-46 125-136 (234)
17 3d3c_J 30S ribosomal protein S 20.7 29 0.001 24.8 0.8 25 132-156 18-42 (87)
No 1
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=100.00 E-value=3.4e-63 Score=405.68 Aligned_cols=151 Identities=28% Similarity=0.582 Sum_probs=68.7
Q ss_pred eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHHhCC
Q psy39 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGM 99 (195)
Q Consensus 20 ~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likkaagi 99 (195)
.+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+||+||||+|++++||+||||+|++|+
T Consensus 3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~-~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi 81 (162)
T 1vq8_I 3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAF-DGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGF 81 (162)
T ss_dssp -----------------------------------------------------------------CCCCHHHHHHHTTSC
T ss_pred eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence 4789999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEe--------ccCChHHHHHHHHHH
Q psy39 100 AKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVV--------DKLDAEEYQQFLEER 171 (195)
Q Consensus 100 ~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~--------~~id~gey~~~l~~~ 171 (195)
++||++|+++++|+||++||||||+.|++| |++.+|+++||+|+||||||||+|+ ++||+|+||+||++|
T Consensus 82 ~kgs~~p~k~~vG~it~~qv~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~g~~p~~vi~~I~~g~~~~~l~~~ 159 (162)
T 1vq8_I 82 ETGSGEPQEDFVADLSVDQVKQIAEQKHPD--LLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYDDVFAAE 159 (162)
T ss_dssp CSCCSSTTTSCCEEECHHHHHHHHHHTTTT--CCCSSHHHHHHHHHHHTTTTTEEEC-----------------------
T ss_pred CCCCCCCCCceeeeeeHHHHHHHHHHHHHh--hcccCHHHHHHHHHhhhHhCeEEEeccCHHHHHHhcChhhHHHHHHHh
Confidence 999999999999999999999999999999 8899999999999999999999985 699999999999999
Q ss_pred HH
Q psy39 172 KI 173 (195)
Q Consensus 172 ~~ 173 (195)
++
T Consensus 160 ~~ 161 (162)
T 1vq8_I 160 AQ 161 (162)
T ss_dssp --
T ss_pred hc
Confidence 75
No 2
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.2e-62 Score=399.35 Aligned_cols=151 Identities=33% Similarity=0.634 Sum_probs=127.5
Q ss_pred eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEE-cCCCceEEEEeCCCHHHHHHHHhC
Q psy39 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKV-NPDRSYKLIIHKPPTSYYLKQAAG 98 (195)
Q Consensus 20 ~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v-~~Drsf~~~i~~Ppts~Likkaag 98 (195)
.+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| .|++|||+|+| |+||||+|++++||+||||+|+||
T Consensus 4 ~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~-~G~~IpV~ItV~~~dRsf~f~vk~Ppas~Ll~Ka~g 82 (164)
T 3j21_H 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDF-AGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELG 82 (164)
T ss_dssp SSSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHHCCS-SCCEEEECBCCCTTTCCCCBCCSSSSSTTHHHHHHC
T ss_pred eEEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHHhhc-CCCeeEEEEEEecCCceEEEEEcCCCHHHHHHHHhC
Confidence 4688999999999999999999999999999999999999999 59999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEe--------ccCChHHHHHHHHH
Q psy39 99 MAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVV--------DKLDAEEYQQFLEE 170 (195)
Q Consensus 99 i~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~--------~~id~gey~~~l~~ 170 (195)
+++|+++|+++++|+||++||||||+.|++| +++.+|+++||+|+||||||||+|+ ++||+|+||+||++
T Consensus 83 ~~kgs~~p~k~~vG~it~~qi~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~g~~p~~v~~~i~~G~~~~~l~k 160 (164)
T 3j21_H 83 LEKGSGEPKHNIVGNLTMEQVIKIAKMKKDQ--MLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEGVYDELFEK 160 (164)
T ss_dssp CCSCCSSTTTCCSCCCCHHHHHHHHHHHTTT--TTCCSHHHHHHHHHHHHHCCC--------------------------
T ss_pred CCCCCCCCCCceeeeeeHHHHHHHHHHHHhh--hcccCHHHHHHHHHHHhhcceEEEeccCHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999999999 8899999999999999999999985 68999999999998
Q ss_pred HHH
Q psy39 171 RKI 173 (195)
Q Consensus 171 ~~~ 173 (195)
||+
T Consensus 161 ~e~ 163 (164)
T 3j21_H 161 AEK 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 875
No 3
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=100.00 E-value=6.7e-60 Score=380.31 Aligned_cols=138 Identities=58% Similarity=1.021 Sum_probs=134.6
Q ss_pred eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHHhCC
Q psy39 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGM 99 (195)
Q Consensus 20 ~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likkaagi 99 (195)
.+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++|++|++|||+|+||+||||+|++++||+||||+|+||+
T Consensus 6 ~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaag~ 85 (145)
T 2ftc_G 6 GVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGI 85 (145)
T ss_pred EEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeccccHHHHHHHHHHhccCccccc--ccHHHHHHHHHHhhhccCeEEec
Q psy39 100 AKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFEC--ETLEYICTSVIGSARSVGIEVVD 157 (195)
Q Consensus 100 ~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~--~~l~~~vk~VlGTArSMGi~V~~ 157 (195)
++||++|+++++|+||++||||||+.|++|+.|++ .+|+++||+|+||||||||+|++
T Consensus 86 ~~gs~~p~~~~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 86 EKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred CCCCCCCCCcCcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence 99999999999999999999999999999866888 99999999999999999999973
No 4
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=100.00 E-value=4.9e-60 Score=379.20 Aligned_cols=137 Identities=48% Similarity=0.814 Sum_probs=131.5
Q ss_pred ce-eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHH
Q psy39 18 NF-RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQA 96 (195)
Q Consensus 18 kv-~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likka 96 (195)
++ .+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+||+||||+|++++||+||||+|+
T Consensus 3 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~-~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ka 81 (140)
T 1mms_A 3 KVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADK-AGMILPVVITVYEDKSFTFIIKTPPASFLLKKA 81 (140)
T ss_dssp ----CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTS-CSSEEEEEEEECTTSCEEEEECCCCHHHHHHHH
T ss_pred ceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhhhc-CCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHH
Confidence 45 8999999999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEec
Q psy39 97 AGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVD 157 (195)
Q Consensus 97 agi~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~~ 157 (195)
+|+++||++|+++++|+||++||||||+.|++| |++.+|+++||+|+||||||||+|++
T Consensus 82 ~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 82 AGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPD--LNANSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp HTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGG--CCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred hCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHcCeeEeeC
Confidence 999999999999999999999999999999999 88999999999999999999999963
No 5
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=100.00 E-value=1.9e-58 Score=372.20 Aligned_cols=137 Identities=41% Similarity=0.767 Sum_probs=73.2
Q ss_pred ce-eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHH
Q psy39 18 NF-RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQA 96 (195)
Q Consensus 18 kv-~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likka 96 (195)
++ ++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+||+||+|+|++++||+||||+|+
T Consensus 2 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~-~G~~ipV~itv~~drsf~~~~~~Ppas~Ll~Ka 80 (146)
T 3egv_B 2 KVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANM-GDAIVPVEITIYADRSFTFVTKTPPASYLIRKA 80 (146)
T ss_dssp CEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHTTTS-TTCEEEEEEEEETTSCEEEEECCCCHHHHC---
T ss_pred ceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHhccc-CCCEeeEEEEEeCCCeEEEEEeCCCHHHHHHHh
Confidence 55 8999999999999999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEec
Q psy39 97 AGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVD 157 (195)
Q Consensus 97 agi~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~~ 157 (195)
||+++|+++|+++++|+||++||||||+.|++| +++.+|+++||+|+||||||||+|++
T Consensus 81 ~g~~~gs~~p~~~~vG~it~~qi~eIA~~K~~d--~~a~~l~~a~k~I~GTA~SmGi~V~g 139 (146)
T 3egv_B 81 AGLEKGAHKPGREKVGRITWEQVLEIAKQKMPD--LNTTDLEAAARMIAGSARSMGVEVVG 139 (146)
T ss_dssp -------------------------------------------------------------
T ss_pred hCCCCCCCCCCCeeeeeecHHHHHHHHHHHhhh--hcccCHHHHHHHhHhhhhcCeEEEEC
Confidence 999999999999999999999999999999999 78999999999999999999999975
No 6
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.3e-56 Score=381.05 Aligned_cols=141 Identities=38% Similarity=0.701 Sum_probs=134.5
Q ss_pred hcce-eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHH
Q psy39 16 VDNF-RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLK 94 (195)
Q Consensus 16 ~kkv-~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Lik 94 (195)
++++ .+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+||+||+|+|++++||+||||+
T Consensus 73 akkv~~~IkL~v~aGkA~PaPPlGPaLG~~GVNim~FcK~fN~~T~d~-~Gl~IPV~ITV~~DRsf~f~vktPpaS~LLk 151 (224)
T 3bbo_K 73 AKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADK-PGFVIPVEITVFDDKSFTFILKTPPASVLLL 151 (224)
T ss_dssp CCCCSSEEEECCBTTBCCCSTTTTTTTTTTSSCTTSSHHHHHHHGGGS-CSSBCCEEEEECSSSCEEEEECCCCTTHHHH
T ss_pred ccceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhccc-CCCeEEEEEEEccCCeEEEEecCCCHHHHHH
Confidence 3466 9999999999999999999999999999999999999999997 7999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEeccC
Q psy39 95 QAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKL 159 (195)
Q Consensus 95 kaagi~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~~~i 159 (195)
|++|+++|+++|+++++|+||++||||||+.|++| +++.+|+++||+|+||||||||+|++..
T Consensus 152 KAagi~kGs~kp~~~~vG~IT~~qV~eIAk~K~~d--l~a~~Le~avK~IlGTArSMGi~V~g~~ 214 (224)
T 3bbo_K 152 KASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPD--LNCTTIESAMRIIAGTAANMGIDIDPPI 214 (224)
T ss_dssp HHHTCSSCCSSTTTSCCEEECHHHHHHHHHHTCTT--SCCSSHHHHHHHHHHHHTTTTEEEC---
T ss_pred HHhCCCCCCCCCCCceeeeecHHHHHHHHHHHHhh--hcCcCHHHHHHHHHHHHHhCeeEEeCCC
Confidence 99999999999999999999999999999999999 8899999999999999999999998743
No 7
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=1.3e-60 Score=382.79 Aligned_cols=139 Identities=41% Similarity=0.768 Sum_probs=135.3
Q ss_pred cce-eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHH
Q psy39 17 DNF-RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQ 95 (195)
Q Consensus 17 kkv-~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likk 95 (195)
+++ ++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++|++|++|||+|+||+||||+|++++||+||||+|
T Consensus 2 kk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~k 81 (141)
T 3r8s_I 2 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKK 81 (141)
T ss_dssp CCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTHHHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTTS
T ss_pred ceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHHhcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHH
Confidence 456 8999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEec
Q psy39 96 AAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVD 157 (195)
Q Consensus 96 aagi~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~~ 157 (195)
++|+++||++|+++++|+||++||||||+.|++| |++.+|+++||+|+||||||||+|++
T Consensus 82 a~g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~g 141 (141)
T 3r8s_I 82 AAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAAD--MTGADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp SSSCSSCCSSTTTSCCSCCCSSTTSTTTSCCSSC--CSCSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred HhCCCCCCCCCCCcEeeEecHHHHHHHHHHHHhh--hcCcCHHHHHHHHHHhhhcceEEEeC
Confidence 9999999999999999999999999999999999 88999999999999999999999863
No 8
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=100.00 E-value=1.8e-57 Score=372.75 Aligned_cols=144 Identities=18% Similarity=0.289 Sum_probs=70.0
Q ss_pred eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHHhCC
Q psy39 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGM 99 (195)
Q Consensus 20 ~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likkaagi 99 (195)
.+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+| +||||+|++ +||+||||+|+||+
T Consensus 11 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~-~G~~ipV~Itv-~drsf~f~v-tPpas~Ll~kaag~ 87 (165)
T 2zkr_i 11 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW-KGLRITVKLTI-QNRQAQIEV-VPSASALIIKALKE 87 (165)
T ss_dssp --------------------------------------------------------------CCC-CCCHHHHHHHHHTC
T ss_pred EEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhc-CCCeEEEEEEE-cCCeeeEEE-CCCHHHHHHHHhCC
Confidence 8899999999999999999999999999999999999999999 69999999999 899999999 99999999999999
Q ss_pred CCCCC--CCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEeccCChHHHHHHHH
Q psy39 100 AKGVM--KPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLE 169 (195)
Q Consensus 100 ~kgs~--~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~~~id~gey~~~l~ 169 (195)
++|++ +|+++++|+||++||||||+.|++| |++.+|+++||+|+||||||||+|++ .+|.||.+.++
T Consensus 88 ~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~g-~~P~ev~~~I~ 156 (165)
T 2zkr_i 88 PPRDRKKQKNIKHSGNITFDEIVNIARQMRHR--SLARELSGTIKEILGTAQSVGCNVDG-RHPHDIIDDIN 156 (165)
T ss_dssp SSCCSSTTTCSSCSEEECHHHHHHHHHHHTTT--CCCSSHHHHHHHHHHHHHHHTEEEC-------------
T ss_pred CCCCcccccCceEEeeEeHHHHHHHHHHHHHh--hcCccHHHHHHHHHHHHHhCeeEEeC-CCHHHHHHHHh
Confidence 99995 4999999999999999999999999 88999999999999999999999973 34444444443
No 9
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=100.00 E-value=1.2e-56 Score=368.24 Aligned_cols=143 Identities=20% Similarity=0.335 Sum_probs=122.5
Q ss_pred ceeEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhh-CccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHH
Q psy39 18 NFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTK-DLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQA 96 (195)
Q Consensus 18 kv~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk-~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likka 96 (195)
.+.+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|+ +| +|++|||+|+| .||||+|++ +||+||||+|+
T Consensus 9 ~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-~G~~IpV~itV-~dRsf~f~v-~Ppas~Ll~Ka 85 (166)
T 3iz5_J 9 QVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDW-KGLRVTVKLTV-QNRQAKVSV-VPSAAALVIKA 85 (166)
T ss_dssp ---CEEEEECTTCCCCHHHHSTTCCTTTSCSSSHHHHHHHHHCSSC-SCSCEEEEEEE-ETTEEEEEC-TTTTHHHHHHH
T ss_pred ceEEEEEEEecCcccCCCCcchhhccCCCCHHHHHHHHHHHhcccC-CCCeEeEEEEE-cCCeEEEEE-cCcHHHHHHHh
Confidence 3488999999999999999999999999999999999999999 97 79999999999 799999999 99999999999
Q ss_pred hCCCCCCCCCCC--eeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEe--------ccCChHHHH
Q psy39 97 AGMAKGVMKPGK--EIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVV--------DKLDAEEYQ 165 (195)
Q Consensus 97 agi~kgs~~p~~--~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~--------~~id~gey~ 165 (195)
||+++|+++|++ +|+|+||++||||||+.|++| |++.+|+++||+|+||||||||+|+ ++||+|+|+
T Consensus 86 ~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~d--l~a~~l~~avk~IlGTArSmGi~V~g~~p~~v~~~i~~G~~~ 162 (166)
T 3iz5_J 86 LKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR--SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVE 162 (166)
T ss_dssp HTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTTT--SCCSCHHHHHHHHHHHSCC-----------------------
T ss_pred cCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHhh--hcccCHHHHHHHhHheeeeeeEEEecCCHHHHHHHHhCCCEe
Confidence 999999999998 679999999999999999999 8899999999999999999999996 579999987
No 10
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=99.97 E-value=1.1e-33 Score=212.32 Aligned_cols=77 Identities=18% Similarity=0.387 Sum_probs=74.7
Q ss_pred eeEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHHhC
Q psy39 19 FRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAG 98 (195)
Q Consensus 19 v~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likkaag 98 (195)
+++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| .|++|||+|+|| ||+|+|++ +||+|+||+|++|
T Consensus 16 ~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T~~~-kG~~ipV~itv~-drsf~~~v-~PpaS~Ll~k~~~ 92 (92)
T 1wib_A 16 VKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW-KGLRITVKLTIQ-NRQAQIEV-VPSASALSGPSSG 92 (92)
T ss_dssp CEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTT-TTSEEEEEEEEE-TTEEECCB-CSCCCCCCCCSCC
T ss_pred EEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEe-CCeeEEEE-cCCHHHHHHHhcC
Confidence 38999999999999999999999999999999999999999999 699999999999 99999999 9999999999876
No 11
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=99.97 E-value=3.1e-32 Score=196.29 Aligned_cols=70 Identities=36% Similarity=0.779 Sum_probs=67.5
Q ss_pred cce-eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCC
Q psy39 17 DNF-RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKP 87 (195)
Q Consensus 17 kkv-~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~P 87 (195)
+++ ++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+||+||||+|++++|
T Consensus 2 k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~-~G~~ipV~Itv~~drsf~~~~ktP 72 (72)
T 3cjs_B 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANM-GDAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGG-CSCEEEEEEEEETTSCEEEEECCC
T ss_pred cceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHHhhc-CCCeEeEEEEEeCCCeEEEEEcCC
Confidence 356 8999999999999999999999999999999999999999999 799999999999999999999988
No 12
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=99.97 E-value=4.6e-32 Score=197.19 Aligned_cols=76 Identities=30% Similarity=0.530 Sum_probs=72.7
Q ss_pred eEEEEeCCCHHHHHHHHhCCCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEec
Q psy39 80 YKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVD 157 (195)
Q Consensus 80 f~~~i~~Ppts~Likkaagi~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~~ 157 (195)
|+|.+++||+||||+|++|+++||++|+++++|+||++||||||+.|++| |++.+|+++||+|+||||||||+|++
T Consensus 1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPD--LNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGG--CCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEEcCCCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence 78999999999999999999999999999999999999999999999999 88999999999999999999999973
No 13
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=99.95 E-value=1.3e-28 Score=175.11 Aligned_cols=67 Identities=31% Similarity=0.539 Sum_probs=65.6
Q ss_pred eCCCHHHHHHHHhCCCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCe
Q psy39 85 HKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGI 153 (195)
Q Consensus 85 ~~Ppts~Likkaagi~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi 153 (195)
++||+||||+|++|+++||++|+++++|+||++||||||+.|++| |++.+|+++||+|+||||||||
T Consensus 1 ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi 67 (67)
T 1qa6_A 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPD--LNAASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGG--CCCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHh--hcccCHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999999999999999 8899999999999999999997
No 14
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=67.00 E-value=3.9 Score=32.17 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=17.9
Q ss_pred HhhhccCeEEe----ccCC-hHHHHHHHHHHH
Q psy39 146 GSARSVGIEVV----DKLD-AEEYQQFLEERK 172 (195)
Q Consensus 146 GTArSMGi~V~----~~id-~gey~~~l~~~~ 172 (195)
..+..+||.|+ ++++ |.+|.+-+.++.
T Consensus 95 ~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~ 126 (188)
T 3bk6_A 95 EATDPWGIKVTAVEIKDVELPAGMQKAMARQA 126 (188)
T ss_dssp HHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred HHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH
Confidence 34567999996 4554 567777776543
No 15
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=36.21 E-value=42 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEE
Q psy39 49 ATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLII 84 (195)
Q Consensus 49 ~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i 84 (195)
.+||++||..+.-=+++ ..-+.++.+||-+=++.+
T Consensus 30 ~~ia~~~N~~lgf~k~~-~~~lk~T~~P~~~GDVVl 64 (116)
T 2k87_A 30 TKFADDLNQMTGFTKPA-SRELSVTFFPDLNGDVVA 64 (116)
T ss_dssp HHHHHHHHHHTTCCSSC-SEEEEEEETTCCCSSEEE
T ss_pred HHHHHHHHHHhCCCCCC-ceEEEEEECCCCCCCEEE
Confidence 48999999999864444 677888889998777766
No 16
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=21.12 E-value=96 Score=25.77 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=10.2
Q ss_pred CCCCCCcCCCCC
Q psy39 35 PPLGPTLGERGV 46 (195)
Q Consensus 35 PplGP~LG~~GI 46 (195)
|.||+.|||+|+
T Consensus 125 ~~LGkiLgprGl 136 (234)
T 2wwq_5 125 GQLGQVLGPRGL 136 (234)
T ss_dssp TSSCSCCCSSCC
T ss_pred HHHhhhhccCCC
Confidence 459999999986
No 17
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=20.70 E-value=29 Score=24.77 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=22.7
Q ss_pred cccccHHHHHHHHHHhhhccCeEEe
Q psy39 132 FECETLEYICTSVIGSARSVGIEVV 156 (195)
Q Consensus 132 l~~~~l~~~vk~VlGTArSMGi~V~ 156 (195)
++...|+..|..++-+|+..|+.|.
T Consensus 18 ~d~~~Ld~~~~~Iv~~ak~~g~~v~ 42 (87)
T 3d3c_J 18 FDHRLIDQATAEIVETAKRTGAQVR 42 (87)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCccC
Confidence 5578999999999999999999995
Done!