RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy39
(195 letters)
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 88.6 bits (220), Expect = 3e-24
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRS 79
++ + AG+A+P PP+GP LG++GVNI FCK FN KT +++GLP+P I V DRS
Sbjct: 5 AYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRS 64
Query: 80 YKLIIH 85
+ +
Sbjct: 65 FTFVTK 70
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 63
Score = 87.8 bits (218), Expect = 5e-24
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+ GVNI FCK FN +T D K G+ LP I V D+S+
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 60
Query: 82 LII 84
II
Sbjct: 61 FII 63
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 80.9 bits (200), Expect = 2e-21
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRS 79
+++ +PAG A+P PP+GP LG+ G NI F K FN T ++ +P I + DRS
Sbjct: 6 AVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANM-GDAIVPVEITIYADRS 64
Query: 80 YKLII 84
+ +
Sbjct: 65 FTFVT 69
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 79.2 bits (196), Expect = 1e-20
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 83 IIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICT 142
I PP + LK+AAG+ G +P + + + EIA++K D ++E
Sbjct: 3 ITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPD--LNAASIEAAMR 60
Query: 143 SVIGSARSVGIEV 155
+ G+ARS+GI V
Sbjct: 61 MIEGTARSMGIVV 73
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 78.3 bits (193), Expect = 5e-20
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRS 79
+++ G L P +G G++ D + T D +GL + ++ + +R
Sbjct: 17 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGD-WKGLRITVKLTIQ-NRQ 74
Query: 80 YKLIIHKPPTSYYLKQAAG 98
++ + P S ++G
Sbjct: 75 AQIEV-VPSASALSGPSSG 92
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 77.4 bits (191), Expect = 6e-20
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 87 PPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIG 146
PP S+ LK+AAG+ KG +P ++I GK+T K I EIAK K D +LE + G
Sbjct: 3 PPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPD--LNANSLEAAMKIIEG 60
Query: 147 SARSVGIEVV 156
+A+S+GIEVV
Sbjct: 61 TAKSMGIEVV 70
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 77.0 bits (190), Expect = 8e-20
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 87 PPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIG 146
PP SY +++AAG+ KG KPG+E G++T + + EIAK K D LE + G
Sbjct: 2 PPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPD--LNTTDLEAAARMIAG 59
Query: 147 SARSVGIE 154
SARS+G+E
Sbjct: 60 SARSMGVE 67
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 75.8 bits (187), Expect = 3e-19
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 87 PPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIG 146
PP SY +++AAG++KG P K GKL + + EIAK K D +LE +V G
Sbjct: 1 PPMSYLIRKAAGLSKGSATPNKAKVGKLNWEQVLEIAKTKMPDL--NAGSLEAAANTVAG 58
Query: 147 SARSVGIEVVDK 158
+ARS+G+ +
Sbjct: 59 TARSMGVTIEGA 70
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 75.0 bits (185), Expect = 4e-19
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 87 PPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIG 146
PPT+ +K AG G +P ++ L++ + +IA+ K D L V+G
Sbjct: 3 PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDL--LSYDLTNAAKEVVG 60
Query: 147 SARSVGIEV 155
+ S+G+ +
Sbjct: 61 TCTSLGVTI 69
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 75.0 bits (185), Expect = 5e-19
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 87 PPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIG 146
PP + LK+AAG+ G KP K+ GK++ + EIA+ K+ D +E + S+ G
Sbjct: 1 PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAAD--MTGADIEAMTRSIEG 58
Query: 147 SARSVGIEV 155
+ARS+G+ V
Sbjct: 59 TARSMGLVV 67
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576
{Shewanella frigidimarina [TaxId: 56812]}
Length = 125
Score = 25.1 bits (55), Expect = 3.9
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 145 IGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKK 180
I S V ++ + L E+Y + +++ +
Sbjct: 14 IESVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQ 49
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 25.2 bits (54), Expect = 4.2
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 106 PGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIG 146
PGK++ ++ K+K + E + I + IG
Sbjct: 2 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIG 42
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 131
Score = 24.5 bits (53), Expect = 6.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 159 LDAEEYQQFLEE 170
L A+EY +F EE
Sbjct: 115 LGAKEYTKFCEE 126
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila
melanogaster [TaxId: 7227]}
Length = 117
Score = 24.4 bits (53), Expect = 6.6
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 156 VDKLDAEEYQQFLEERKIIVAEQKKELEEAKEAKM 190
+ K + + ++F E K ++A
Sbjct: 71 ITKWNTDTVEEFFETHLAKDGAGKNSYSVVEDADG 105
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 24.1 bits (52), Expect = 8.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 159 LDAEEYQQFLEE 170
LDA YQ+ LE
Sbjct: 114 LDAGGYQEVLES 125
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102
{Shewanella loihica [TaxId: 359303]}
Length = 125
Score = 24.0 bits (52), Expect = 8.8
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 145 IGSARSVGIEVVDKLDAEEYQQFLEE 170
+ + V KL E+Y+Q
Sbjct: 15 SQDDFYLAFKAVGKLTHEDYEQMTPL 40
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 23.7 bits (51), Expect = 9.6
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 86 KPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYE 121
KPP SY A + + + +LTL IY
Sbjct: 3 KPPYSY-----AQLIVQAITMAPD--KQLTLNGIYT 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.372
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 714,545
Number of extensions: 33086
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 30
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)