BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3902
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + L SL E
Sbjct: 516 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 572
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR P + S++FY+ SL
Sbjct: 573 RLV--------------VLGIRP---IRLQVQYRMHPALSAFPSNIFYEGSL 607
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + LS
Sbjct: 516 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLS 567
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + L SL E
Sbjct: 339 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 395
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR P + S++FY+ SL
Sbjct: 396 RLV--------------VLGIRP---IRLQVQYRMHPALSAFPSNIFYEGSL 430
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + LS
Sbjct: 339 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLS 390
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + L SL E
Sbjct: 340 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 396
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR P + S++FY+ SL
Sbjct: 397 RLV--------------VLGIRP---IRLQVQYRMHPALSAFPSNIFYEGSL 431
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + LS
Sbjct: 340 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLS 391
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QA+EPE L+PI + V+L GD QLGP + + L+ SL E
Sbjct: 518 FRTVLIDESTQASEPECLIPIV---KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFE 574
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + G+ P RL YR P + + S++FY+ SL
Sbjct: 575 RLI--------------SLGHVP---IRLEVQYRMNPYLSEFPSNMFYEGSL 609
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
F +IDE+ QA+EPE L+PI + V+L GD QLGP + +
Sbjct: 518 FRTVLIDESTQASEPECLIPIV---KGAKQVILVGDHQQLGPVILER 561
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121
P YF VIDE QA E +P+ + +LAGD QL PT S L +
Sbjct: 363 PESYFDVVVIDECAQALEASCWIPLLKARK----CILAGDHKQLPPTTVSHKAALAGLSL 418
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPHN 181
SL+ERL Y R+V L YR I++ +SD Y L H+
Sbjct: 419 SLMERLAEE---------------YGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHS 463
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P YF VIDE QA E +P+ + +LAGD QL PT S
Sbjct: 363 PESYFDVVVIDECAQALEASCWIPLLKARK----CILAGDHKQLPPTTVS 408
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121
P YF VIDE QA E +P+ + +LAGD QL PT S L +
Sbjct: 363 PESYFDVVVIDECAQALEASCWIPLLKARK----CILAGDHKQLPPTTVSHKAALAGLSL 418
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPHN 181
SL+ERL Y R+V L YR I++ +SD Y L H+
Sbjct: 419 SLMERLAEE---------------YGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHS 463
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P YF VIDE QA E +P+ + +LAGD QL PT S
Sbjct: 363 PESYFDVVVIDECAQALEASCWIPLLKARK----CILAGDHKQLPPTTVS 408
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLE----LST 61
+T VI E + + ++P+ L HR N L G VF LG L S
Sbjct: 329 YTEAVIHEIQRFGD---MLPMGLAHRVNKDTKFRDFFLPKGTEVFPMLGSVLRDPRFFSN 385
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHR 91
P + +D+ GQ + + VP S+ R
Sbjct: 386 PRDFNPQHFLDKKGQFKKSDAFVPFSIGKR 415
>pdb|2Q7S|A Chain A, Crystal Structure Of N-Formylglutamate Amidohydrolase
(Yp_297560.1) From Ralstonia Eutropha Jmp134 At 2.00 A
Resolution
pdb|2Q7S|B Chain B, Crystal Structure Of N-Formylglutamate Amidohydrolase
(Yp_297560.1) From Ralstonia Eutropha Jmp134 At 2.00 A
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 55 QQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLG 114
++L++ +P + D G EP ++ + R+ G+ V DP + G + +++G
Sbjct: 180 ERLKIQSPRPLADFVLGDRDGTTCEPGLVDLVERELREKGYTVARNDPYK-GVQLIAQIG 238
Query: 115 QQLELRISLLERLTGRFLY----SRDMSRFYATGGYDPRLVTRLVNNY 158
+ E R SL + R LY +R+ + +AT D L+T + Y
Sbjct: 239 RPAERRNSLQIEIR-RPLYXEEGTRERNEGFATLQRDLTLLTLRIAEY 285
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 27.3 bits (59), Expect = 4.4, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 375 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 430
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 431 ELLTNVALTSRDNARTPFQWD 451
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 347 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 402
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 403 ELLTNVALTSRDNARTPFQWD 423
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 348 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 403
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 404 ELLTNVALTSRDNARTPFQWD 424
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 348 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 403
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 404 ELLTNVALTSRDNARTPFQWD 424
>pdb|2VW0|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW1|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|4FOQ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 2-Aminoethanesulfonic Acid
pdb|4FOV|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Cyclohexyl-1-Propylsulfonic
Acid
pdb|4FOW|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Ammoniopropane-1-Sulfonate
pdb|4FOY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-(Benzylammonio)ethanesulfonate
pdb|4FP2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2[(Cyclohexylmethyl)ammonio]sulfonate
pdb|4FP3|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(Furan-2-Ylmethyl)ammonio]sulfonate
pdb|4FPC|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPE|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPF|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPG|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Hydroxybenzyl)ammonio]ethanesulfonate
pdb|4FPH|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Fluorobenzyl)ammonio]ethanesulfonate
pdb|4FPJ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPK|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methylbenzyl)ammonio]ethanesulfonate
pdb|4FPL|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3,4-Dichlorobenzyl)ammonio]ethanesulfonate
pdb|4FPO|B Chain B, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chloro-4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Bromobenzyl)ammonio]ethanesulfonate
pdb|4FQ4|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Fluoro-3-Methylbenzyl)ammonio]ethanesulfonate
Length = 697
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 1 TPAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
TP Y G++ E L+P L + NG + G L L K +L +
Sbjct: 454 TPTNYIAMTTSQNRGESWEQFKLLPPFLGEKHNGTYLCPGQGLAL------KSSNRLIFA 507
Query: 61 T-PSGYFTHCVIDEAGQ 76
T SG T+ + D++GQ
Sbjct: 508 TYTSGELTYLISDDSGQ 524
>pdb|2JKB|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In
Complex With 2,7-Anhydro-Neu5ac
Length = 686
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 1 TPAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
TP Y G++ E L+P L + NG + G L L K +L +
Sbjct: 443 TPTNYIAMTTSQNRGESWEQFKLLPPFLGEKHNGTYLCPGQGLAL------KSSNRLIFA 496
Query: 61 T-PSGYFTHCVIDEAGQ 76
T SG T+ + D++GQ
Sbjct: 497 TYTSGELTYLISDDSGQ 513
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 347 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 402
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 403 ELLTNVALTSRDNARTPFQWD 423
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 348 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 403
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 404 ELLTNVALTSRDNARTPFQWD 424
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 21 EVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80
+ L ++L R + GD L + F L Q + G+F V E G+AT
Sbjct: 347 KALATVTLTQRGTP-FIFQGDELGMTNYPFKTL-QDFDDIEVKGFFQDYV--ETGKATAE 402
Query: 81 EVLVPISLLHRDNGHVVLAGD 101
E+L ++L RDN D
Sbjct: 403 ELLTNVALTSRDNARTPFQWD 423
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,791,614
Number of Sequences: 62578
Number of extensions: 239447
Number of successful extensions: 529
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 42
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)