BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3902
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 133 bits (334), Expect = 8e-31, Method: Composition-based stats.
Identities = 61/129 (47%), Positives = 85/129 (65%)
Query: 51 SKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVF 110
+ LG L+L P+G+FTH + DEAGQ TEPE +VPI +L + VVL+GDP QL V
Sbjct: 927 TTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVT 986
Query: 111 SKLGQQLELRISLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSD 170
S++ ++ IS LERL R Y +D+ RF + GY+P ++T+L+ NYR +P I+ I S
Sbjct: 987 SRIASKMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSR 1046
Query: 171 LFYDASLVP 179
LFYD L+P
Sbjct: 1047 LFYDDELIP 1055
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%)
Query: 33 NGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRD 92
+G + ++ T S G ++ GYFTH +DEAGQA+EPE L+P+ L+
Sbjct: 849 DGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDI 908
Query: 93 NGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATGGYDPRLVT 152
NG +VLAGDP+QLGP + S+L L +S+LERL R Y RD + F A G Y+P LVT
Sbjct: 909 NGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVT 968
Query: 153 RLVNNYRTMPEILKISSDLFYDASL 177
+LV NYR+ +L + S LFY L
Sbjct: 969 KLVKNYRSHSALLALPSRLFYHREL 993
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 86/145 (59%)
Query: 33 NGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRD 92
+G + ++ T S G ++ G+FTH +DEAGQA+EPE L+P+ L+
Sbjct: 847 DGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDI 906
Query: 93 NGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATGGYDPRLVT 152
+G +VLAGDP+QLGP + S+L L +S LERL R Y RD + F A G ++P LVT
Sbjct: 907 SGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVT 966
Query: 153 RLVNNYRTMPEILKISSDLFYDASL 177
+LV NYR+ +L + S LFY L
Sbjct: 967 KLVKNYRSHEALLMLPSRLFYHREL 991
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLG 54
G+FTH +DEAGQA+EPE L+P+ L+ +G +VLAGDP+QLGP + S+L
Sbjct: 878 GHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLA 928
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPIS-LLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELR 120
P G+F+H +DEAG A EPE+++ ++ LL+ + G +VLAGDP QLGP + S + L
Sbjct: 662 PVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLG 721
Query: 121 ISLLERL-TGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
+SLLERL T LY + G+D R VT+L+ NYR+ P ILK+ ++LFYD L
Sbjct: 722 LSLLERLMTQNELYQK------GDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNEL 773
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPIS-LLHRDNGHVVLAGDPLQLGPTVFS 51
P G+F+H +DEAG A EPE+++ ++ LL+ + G +VLAGDP QLGP + S
Sbjct: 662 PVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRS 712
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 99.4 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/115 (48%), Positives = 71/115 (61%), Gaps = 10/115 (8%)
Query: 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISL 123
G+FTH ++DEAGQA+EPE ++ +S L VVLAGDP QLGP ++S+ + L L S
Sbjct: 537 GHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSY 596
Query: 124 LERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
LER L+ D +Y G D VT+LV NYR PEIL + S LFYD LV
Sbjct: 597 LER-----LFECD---YYCEG--DENYVTKLVKNYRCHPEILDLPSKLFYDGELV 641
Score = 63.5 bits (153), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLEL 59
G+FTH ++DEAGQA+EPE ++ +S L VVLAGDP QLGP ++S+ + L L
Sbjct: 537 GHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGL 592
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 82/145 (56%), Gaps = 15/145 (10%)
Query: 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLL--------HRDN 93
P ++ T G+ + + P GYF+H IDE G A EPE +V I+ L + +
Sbjct: 608 PYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNPNG 667
Query: 94 GHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLT-GRFLYSRDMSRFYATGGYDPRLVT 152
G +VLAGDP QLGP S L Q L SLLERL LY++ + GY+P+ VT
Sbjct: 668 GQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAK------SDEGYNPQFVT 721
Query: 153 RLVNNYRTMPEILKISSDLFYDASL 177
+L+ NYR+ ILK+ ++LFYD+ L
Sbjct: 722 KLLWNYRSHKAILKVPNELFYDSEL 746
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLL--------HRDNGHVVLAGDPLQLGPTVFSKL 53
P GYF+H IDE G A EPE +V I+ L + + G +VLAGDP QLGP S L
Sbjct: 628 PPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPL 687
Query: 54 GQQLELST 61
Q L T
Sbjct: 688 AAQHGLGT 695
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 20 PEVLVPISLLHRDNGHVVL-AGDPLQLGPTVFSKL---GQQLELSTPSGYFTHCVIDEAG 75
PE + P G V A LQ + + L G+ + P +FTH IDEAG
Sbjct: 589 PEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEAG 648
Query: 76 QATEPEVLVPISLLHR------DNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERL-T 128
EPE LV I+ L G +VLAGDP QLGP + S L Q+ L SLLERL T
Sbjct: 649 HCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLT 708
Query: 129 GRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
LY + GYDP+ +T+L+ NYR+ P IL I + L+Y+ L
Sbjct: 709 YNSLYKK------GPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGEL 751
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHR------DNGHVVLAGDPLQLGPTVFSKLGQ 55
P +FTH IDEAG EPE LV I+ L G +VLAGDP QLGP + S L Q
Sbjct: 635 PIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQ 694
Query: 56 Q 56
+
Sbjct: 695 K 695
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 72/123 (58%), Gaps = 13/123 (10%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLL----HRDN--GHVVLAGDPLQLGPTVFSKLGQ 115
P +FTH IDEAG A EPE LV I+ L DN G +VLAGDP QLGP + L Q
Sbjct: 635 PIDHFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQ 694
Query: 116 QLELRISLLERL-TGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYD 174
+ L SLLERL T LY + GY+P+ +T+L+ NYR+ P IL + + L+YD
Sbjct: 695 KHGLGYSLLERLLTFNALYKK------GPDGYNPQFITKLLRNYRSHPTILDVPNRLYYD 748
Query: 175 ASL 177
L
Sbjct: 749 GEL 751
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLL----HRDN--GHVVLAGDPLQLGPTVFSKLGQ 55
P +FTH IDEAG A EPE LV I+ L DN G +VLAGDP QLGP + L Q
Sbjct: 635 PIDHFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQ 694
Query: 56 Q 56
+
Sbjct: 695 K 695
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLH------RDNGHVVLAGDPLQLGPTVFSKLGQ 115
P +FTH IDEAG EPE LV I+ L G +VLAGDP QLGP + S L
Sbjct: 636 PIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLAL 695
Query: 116 QLELRISLLERLTGRFLYSRDMSRFYATG--GYDPRLVTRLVNNYRTMPEILKISSDLFY 173
+ L SLLERL + Y G GYDP+ +T+L+ NYR+ P IL I + L+Y
Sbjct: 696 KHGLGYSLLERLLA-------YNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYY 748
Query: 174 DASL 177
D L
Sbjct: 749 DGEL 752
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLH------RDNGHVVLAGDPLQLGPTVFSKLG 54
P +FTH IDEAG EPE LV I+ L G +VLAGDP QLGP + S L
Sbjct: 636 PIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLA 694
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 8/115 (6%)
Query: 65 YFTHCVIDEAGQATEPEVLVPIS-LLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISL 123
+FTH +DEAG A E E ++ ++ LL+ + G +VLAGDP QLGP + S L L +SL
Sbjct: 670 HFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSL 729
Query: 124 LERL-TGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
LERL T LY R F D R V++L+ NYR+ P IL++ + LFYD L
Sbjct: 730 LERLMTQNDLYKRGDVEF------DNRYVSKLIMNYRSHPYILEVPNRLFYDGEL 778
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 5 YFTHCVIDEAGQATEPEVLVPIS-LLHRDNGHVVLAGDPLQLGPTVFSKLG 54
+FTH +DEAG A E E ++ ++ LL+ + G +VLAGDP QLGP + S L
Sbjct: 670 HFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLA 720
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 14/115 (12%)
Query: 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISL 123
G+FTH ++DEA QA E E ++P++L + N +VLAGD +QL P V+S+ ++ L +SL
Sbjct: 786 GFFTHVLLDEAAQAMECETIMPLALATK-NTRIVLAGDHMQLSPFVYSEFARERNLHVSL 844
Query: 124 LERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
L+RL + + R++ L NYR+ I+ +S+LFY+ L+
Sbjct: 845 LDRLYEHY-----------PAEFPCRIL--LCENYRSHEAIINYTSELFYEGKLM 886
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLEL 59
G+FTH ++DEA QA E E ++P++L + N +VLAGD +QL P V+S+ ++ L
Sbjct: 786 GFFTHVLLDEAAQAMECETIMPLALATK-NTRIVLAGDHMQLSPFVYSEFARERNL 840
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 14/115 (12%)
Query: 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISL 123
G+FTH ++DEA QA E E ++P++L + N +VLAGD +QL P V+S+ ++ L +SL
Sbjct: 786 GFFTHILLDEAAQAMECETIMPLALATQ-NTRIVLAGDHMQLSPFVYSEFARERNLHVSL 844
Query: 124 LERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
L+RL + + R++ L NYR+ I+ +S+LFY+ L+
Sbjct: 845 LDRLYEHY-----------PAEFPCRIL--LCENYRSHEAIINYTSELFYEGKLM 886
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLEL 59
G+FTH ++DEA QA E E ++P++L + N +VLAGD +QL P V+S+ ++ L
Sbjct: 786 GFFTHILLDEAAQAMECETIMPLALATQ-NTRIVLAGDHMQLSPFVYSEFARERNL 840
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz
PE=2 SV=1
Length = 1860
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 14/115 (12%)
Query: 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISL 123
G FTH ++DEA QA E E ++P++L + VVLAGD +QL P V+S+ ++ L +SL
Sbjct: 779 GIFTHILLDEAAQAMECETIMPLALAVKST-RVVLAGDHMQLSPFVYSEFARERNLHVSL 837
Query: 124 LERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
L+RL + Y R++ L NYR+ I+ +SDLFY+ L+
Sbjct: 838 LDRLYEHY-----------PSEYPCRIL--LCENYRSHEAIINYTSDLFYEGKLM 879
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLEL 59
G FTH ++DEA QA E E ++P++L + VVLAGD +QL P V+S+ ++ L
Sbjct: 779 GIFTHILLDEAAQAMECETIMPLALAVKST-RVVLAGDHMQLSPFVYSEFARERNL 833
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
FT +IDE+ Q+TEPE +VP+ L + ++L GD QLGP V K + L SL E
Sbjct: 611 FTSILIDESMQSTEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAARAGLSQSLFE 667
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR PE+ + S+ FY+ SL
Sbjct: 668 RLV--------------VLGIRP---FRLEVQYRMHPELSQFPSNFFYEGSL 702
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
FT +IDE+ Q+TEPE +VP+ L + ++L GD QLGP V K + LS
Sbjct: 611 FTSILIDESMQSTEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAARAGLS 662
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEPE L+P+ L + VVL GD QLGP + K + L SL E
Sbjct: 650 FRQVLIDESTQATEPECLIPLVLGVK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFE 706
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL T G P RL YR P + + S+ FY+ +L
Sbjct: 707 RLV--------------TLGIKP---IRLQVQYRMHPALSEFPSNSFYEGTL 741
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDE+ QATEPE L+P+ L + VVL GD QLGP + K + L+
Sbjct: 650 FRQVLIDESTQATEPECLIPLVLGVK---QVVLVGDHCQLGPVIMCKKAARAGLA 701
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + L SL E
Sbjct: 636 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 692
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR P + S++FY+ SL
Sbjct: 693 RLV--------------VLGIRP---IRLQVQYRMHPALSAFPSNIFYEGSL 727
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + LS
Sbjct: 636 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLS 687
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + L SL E
Sbjct: 641 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 697
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR P + S++FY+ SL
Sbjct: 698 RLV--------------VLGIRP---IRLQVQYRMHPALSAFPSNIFYEGSL 732
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDE+ QATEPE +VP+ L + ++L GD QLGP V K + LS
Sbjct: 641 FRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKAAKAGLS 692
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 20/113 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F H +IDE+ QA+EPE L+P+ + + V+L GD QLGP + K L SL E
Sbjct: 700 FPHILIDESTQASEPECLIPLMMGAK---QVILVGDHRQLGPVLLCKKVVDAGLSQSLFE 756
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
RL + G+ P RL YR P + + S+ Y+ LV
Sbjct: 757 RLI--------------SLGHHPE---RLTIQYRMHPSLTEFPSNTSYEGQLV 792
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
F H +IDE+ QA+EPE L+P+ + + V+L GD QLGP + K
Sbjct: 700 FPHILIDESTQASEPECLIPLMMGAK---QVILVGDHRQLGPVLLCK 743
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDEA QA EP L+P++ + V L GDP QL TV S + Q S+ E
Sbjct: 484 FDVVIIDEAAQAVEPATLIPLATRCK---QVFLVGDPKQLPATVISTVAQDSGYGTSMFE 540
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL GY V L YR PEI S FY+ +L
Sbjct: 541 RLQ--------------KAGYP---VKMLKTQYRMHPEIRSFPSKQFYEGAL 575
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGY 65
F +IDEA QA EP L+P++ + V L GDP QL TV S + Q SGY
Sbjct: 484 FDVVIIDEAAQAVEPATLIPLATRCK---QVFLVGDPKQLPATVISTVAQD------SGY 534
Query: 66 FT 67
T
Sbjct: 535 GT 536
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QA+EPE L+PI + V+L GD QLGP + + L+ SL E
Sbjct: 566 FRTVLIDESTQASEPECLIPIV---KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFE 622
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + G+ P RL YR P + + S++FY+ SL
Sbjct: 623 RLI--------------SLGHVP---IRLEVQYRMNPYLSEFPSNMFYEGSL 657
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
F +IDE+ QA+EPE L+PI + V+L GD QLGP + +
Sbjct: 566 FRTVLIDESTQASEPECLIPIV---KGAKQVILVGDHQQLGPVILER 609
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDEA QA EP+ +P+ +++ V+LAGD +QL P V SK IS+ E
Sbjct: 383 FDAVIIDEASQALEPQCWIPLLGMNK----VILAGDHMQLSPNVQSK-----RPYISMFE 433
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVN-NYRTMPEILKISSDLFYDASLVP 179
RL LV +N YR I K SD FYD+ LVP
Sbjct: 434 RLVKS----------------QGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVP 472
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
F +IDEA QA EP+ +P+ +++ V+LAGD +QL P V SK
Sbjct: 383 FDAVIIDEASQALEPQCWIPLLGMNK----VILAGDHMQLSPNVQSK 425
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDEA QA+EPE ++P+ L + VVL GD QLGP V +K L SL E
Sbjct: 558 FRSVLIDEATQASEPECMIPLVLGAK---QVVLVGDHQQLGPVVMNKKVALASLSQSLFE 614
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RLV YR P + + S+ FY+ +L
Sbjct: 615 RLI--------------ILGNSP---FRLVVQYRMHPCLSEFPSNTFYEGTL 649
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
F +IDEA QA+EPE ++P+ L + VVL GD QLGP V +K
Sbjct: 558 FRSVLIDEATQASEPECMIPLVLGAK---QVVLVGDHQQLGPVVMNK 601
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F + +IDE+ Q+ EPE ++P+ L + VVL GD QLGP + +K + L SL E
Sbjct: 615 FRNVLIDESTQSAEPECMIPLVLGCK---QVVLVGDHKQLGPVIMNKKAAKAGLNQSLFE 671
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + P RL YR P + + S++FY+ SL
Sbjct: 672 RLVKL--------------QFTP---IRLKVQYRMHPCLSEFPSNMFYEGSL 706
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F + +IDE+ Q+ EPE ++P+ L + VVL GD QLGP + +K + L+
Sbjct: 615 FRNVLIDESTQSAEPECMIPLVLGCK---QVVLVGDHKQLGPVIMNKKAAKAGLN 666
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121
P YF VIDE QA E +P+ + +LAGD QL PT S L +
Sbjct: 365 PESYFDVVVIDECAQALEASCWIPLLKARK----CILAGDHKQLPPTTVSHKAALAGLSL 420
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPHN 181
SL+ERL Y R+V L YR I++ +SD Y L H+
Sbjct: 421 SLMERLAEE---------------YGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHS 465
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P YF VIDE QA E +P+ + +LAGD QL PT S
Sbjct: 365 PESYFDVVVIDECAQALEASCWIPLLKARK----CILAGDHKQLPPTTVS 410
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1
SV=6
Length = 2649
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 49 VFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPT 108
V + Q EL P G+F+H +IDEA Q E E L P++ +VLAGD +Q+ P
Sbjct: 644 VVTTTSQARELRVPVGFFSHILIDEAAQMLECEALTPLAYASHGT-RLVLAGDHMQVTPR 702
Query: 109 VFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLV--NNYRTMPEILK 166
+FS + + +LL RL FL Y ++ +RLV NYR I+
Sbjct: 703 LFS-VARARAAEHTLLHRL---FL-------CYQQETHEVARQSRLVFHENYRCTDAIVS 751
Query: 167 ISSDLFYDASLVP 179
S FY A P
Sbjct: 752 FISRHFYVAKGNP 764
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P G+F+H +IDEA Q E E L P++ +VLAGD +Q+ P +FS
Sbjct: 657 PVGFFSHILIDEAAQMLECEALTPLAYASHGT-RLVLAGDHMQVTPRLFS 705
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 70 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLER 126
++DEAG ATEPE L+P+ + VVL GD QL P V ++ Q L L SL ER
Sbjct: 2358 LVDEAGMATEPETLIPLVQFPQAE-KVVLLGDHKQLRPVVKNERLQNLGLDRSLFER 2413
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 10 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLEL 59
++DEAG ATEPE L+P+ + VVL GD QL P V ++ Q L L
Sbjct: 2358 LVDEAGMATEPETLIPLVQFPQAE-KVVLLGDHKQLRPVVKNERLQNLGL 2406
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F+ ++DEAGQ+ E E L P L+HR N ++L GDP QL PTV S Q+ S++
Sbjct: 2151 FSCVIVDEAGQSCEVETLSP--LIHRCN-KLILVGDPKQLPPTVISMKAQEYGYDQSMMA 2207
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
R + + + G P V +L YR P+I S+ Y+ +L
Sbjct: 2208 RFCKLLEENVEQNMI----GRLP--VLQLTIQYRMHPDICLFPSNYVYNKNL 2253
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQ 56
F+ ++DEAGQ+ E E L P L+HR N ++L GDP QL PTV S Q+
Sbjct: 2151 FSCVIVDEAGQSCEVETLSP--LIHRCN-KLILVGDPKQLPPTVISMKAQE 2198
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F+ ++DEAGQ+ E E L P L+HR N ++L GDP QL PTV S Q+ S++
Sbjct: 2175 FSCVIVDEAGQSCEIETLTP--LIHRCN-KLILVGDPKQLPPTVISMKAQEYGYDQSMMA 2231
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
R + R + + +L YR P+I S+ Y+ +L
Sbjct: 2232 R------FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNL 2277
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQ 56
F+ ++DEAGQ+ E E L P L+HR N ++L GDP QL PTV S Q+
Sbjct: 2175 FSCVIVDEAGQSCEIETLTP--LIHRCN-KLILVGDPKQLPPTVISMKAQE 2222
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 70 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTG 129
+IDE+ QATEPE+LV I R +VL GD QLGP V K L SL ERL
Sbjct: 608 LIDESTQATEPEILVSIM---RGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLV- 663
Query: 130 RFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
G P RL YR P + + S++FYD SL
Sbjct: 664 -------------LLGIRP---FRLQVQYRMHPVLSEFPSNVFYDGSL 695
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 10 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
+IDE+ QATEPE+LV I R +VL GD QLGP V K
Sbjct: 608 LIDESTQATEPEILVSIM---RGVRQLVLVGDHCQLGPVVICK 647
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F+ +IDEA QA E + ++P L +L GDP QL PTV SK L SL
Sbjct: 1372 FSTVIIDEAAQAVELDTIIP---LRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFV 1428
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
R+ F S M L YR P+I S FYD+ L
Sbjct: 1429 RIQKNF--SNQM--------------CLLSIQYRMHPDISHFPSKKFYDSRL 1464
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F+ +IDEA QA E + ++P L +L GDP QL PTV SK L S
Sbjct: 1372 FSTVIIDEAAQAVELDTIIP---LRYGAKKCILVGDPNQLPPTVLSKKAASLNYS 1423
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 23/112 (20%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F VIDE QA EP L+PI +++AGD QL PTV S + EL+ +L E
Sbjct: 395 FDVIVIDEGSQAMEPSCLIPIV----KGRKLIMAGDHKQLPPTVLS---ENEELKKTLFE 447
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL ++ P + L YR +I++ + +FY+ L
Sbjct: 448 RLIKKY----------------PEFSSILEIQYRMNEKIMEFPNKMFYNNKL 483
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSK 52
F VIDE QA EP L+PI +++AGD QL PTV S+
Sbjct: 395 FDVIVIDEGSQAMEPSCLIPIV----KGRKLIMAGDHKQLPPTVLSE 437
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 70 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVF-SKLGQQLELRISLLERLT 128
V+DE Q TEP L+PI+ + ++L GDP QL PT+ S + L +L +RL
Sbjct: 629 VLDECSQITEPASLLPIARFECEK--LILVGDPKQLPPTIQGSDAAHENGLEQTLFDRL- 685
Query: 129 GRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
G+ P L L YR P I I++DLFY +L+
Sbjct: 686 -------------CLMGHKPIL---LRTQYRCHPAISAIANDLFYKGALM 719
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 10 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTV 49
V+DE Q TEP L+PI+ + ++L GDP QL PT+
Sbjct: 629 VLDECSQITEPASLLPIARFECEK--LILVGDPKQLPPTI 666
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 38 LAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVV 97
L D + T S G L L+ +G F +IDEA QA E L+PI VV
Sbjct: 558 LVLDEADIVATTLSFSGASL-LTKMAGGFDIVIIDEAAQAVETSTLIPI---QHGCKKVV 613
Query: 98 LAGDPLQLGPTVFSKLGQQLELRISLLERLTGR 130
L GDP QL T+ S L + + SL +RL +
Sbjct: 614 LVGDPKQLPATIISPLAIKYKYDQSLFQRLQEK 646
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 3 AGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLG 54
AG F +IDEA QA E L+PI VVL GDP QL T+ S L
Sbjct: 582 AGGFDIVIIDEAAQAVETSTLIPI---QHGCKKVVLVGDPKQLPATIISPLA 630
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGH-VVLAGDPLQLGPTVFSKLGQQL--ELRIS 122
F +IDE QA EP+ +P+ + H++ H +VLAGD QL PT+ ++ + + L +
Sbjct: 389 FDTLIIDEVSQAMEPQCWIPL-IAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETT 447
Query: 123 LLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
L +R+ + RDM +F L YR +I++ S Y+ L+
Sbjct: 448 LFDRII-KIFPKRDMVKF-------------LNVQYRMNQKIMEFPSHSMYNGKLL 489
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGH-VVLAGDPLQLGPTV 49
F +IDE QA EP+ +P+ + H++ H +VLAGD QL PT+
Sbjct: 389 FDTLIIDEVSQAMEPQCWIPL-IAHQNQFHKLVLAGDNKQLPPTI 432
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F C++DEA Q ++P L P+ R VL GD QL P V ++ + L + SL +
Sbjct: 756 FDFCIVDEASQISQPVCLGPLFFSRR----FVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + V +L YR +I+ +S+ L Y+ L
Sbjct: 812 RLE-----------------QNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKL 846
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F C++DEA Q ++P L P+ R VL GD QL P V ++ + L +S
Sbjct: 756 FDFCIVDEASQISQPVCLGPLFFSRR----FVLVGDHQQLPPLVLNREARALGMS 806
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo
sapiens GN=DNA2 PE=1 SV=3
Length = 1060
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F C++DEA Q ++P L P+ R VL GD QL P V ++ + L + SL +
Sbjct: 756 FDFCIVDEASQISQPICLGPLFFSRR----FVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + V +L YR +I+ +S+ L Y+ L
Sbjct: 812 RLE-----------------QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKL 846
Score = 37.0 bits (84), Expect = 0.069, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F C++DEA Q ++P L P+ R VL GD QL P V ++ + L +S
Sbjct: 756 FDFCIVDEASQISQPICLGPLFFSRR----FVLVGDHQQLPPLVLNREARALGMS 806
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 21/114 (18%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDEA QA E ++P L V+ GDP QL PTV SK
Sbjct: 1510 FRTVIIDEAAQAVELSSIIP---LKYGCESCVMVGDPNQLPPTVLSK------------- 1553
Query: 126 RLTGRFLYSRDM-SRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
+ +F YS+ + R + L++ YR PEI + S FY++ L+
Sbjct: 1554 -TSAKFGYSQSLYVRMFKQHNESACLLSI---QYRMNPEISRFPSKFFYNSKLL 1603
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F +IDEA QA E ++P L V+ GDP QL PTV SK + S
Sbjct: 1510 FRTVIIDEAAQAVELSSIIP---LKYGCESCVMVGDPNQLPPTVLSKTSAKFGYS 1561
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 32/145 (22%)
Query: 33 NGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRD 92
N H V+A + + +FS+ F C++DEA Q ++P L P+ R
Sbjct: 734 NSHPVVATTCMGISHPMFSR-----------KTFDFCIVDEASQISQPICLGPLFFSRR- 781
Query: 93 NGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATGGYDPRLVT 152
VL GD QL P V ++ + L + SL +RL R+ S V
Sbjct: 782 ---FVLVGDHKQLPPLVLNREARALGMSESLFKRL------ERNES-----------AVV 821
Query: 153 RLVNNYRTMPEILKISSDLFYDASL 177
+L YR +I+ +S+ L Y+ L
Sbjct: 822 QLTIQYRMNRKIMSLSNKLTYEGKL 846
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F C++DEA Q ++P L P+ R VL GD QL P V ++ + L +S
Sbjct: 756 FDFCIVDEASQISQPICLGPLFFSRR----FVLVGDHKQLPPLVLNREARALGMS 806
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F C++DEA Q ++P L P+ R VL GD QL P V S ++L + SL +
Sbjct: 757 FDFCIVDEASQISQPICLGPLFFADR----FVLVGDHQQLPPLVKSAEARELGMSESLFK 812
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + V +L YR +I+ +S+ L Y+ L
Sbjct: 813 RLE-----------------RNQEAVVQLTVQYRMNSKIMALSNKLVYEGRL 847
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F C++DEA Q ++P L P+ R VL GD QL P V S ++L +S
Sbjct: 757 FDFCIVDEASQISQPICLGPLFFADR----FVLVGDHQQLPPLVKSAEARELGMS 807
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121
P YF V+DE QA E +P+ + +LAGD QL PT S L
Sbjct: 364 PEDYFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHKQLPPTTVSHKAALAGLSR 419
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPH 180
SL+ERL + + +V L YR I + +S+ Y L H
Sbjct: 420 SLMERLAEK---------------HGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAH 463
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P YF V+DE QA E +P+ + +LAGD QL PT S
Sbjct: 364 PEDYFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHKQLPPTTVS 409
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus
musculus GN=Dna2 PE=2 SV=2
Length = 1062
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 33 NGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRD 92
N H ++A + + +FS+ F C++DEA Q ++P L P+ R
Sbjct: 735 NSHPIVATTCMGINHPIFSR-----------KTFDFCIVDEASQISQPVCLGPLFFSRR- 782
Query: 93 NGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATGGYDPRLVT 152
VL GD QL P V ++ + L + SL +RL R+ S V
Sbjct: 783 ---FVLVGDHQQLPPLVVNREARALGMSESLFKRL------ERNES-----------AVV 822
Query: 153 RLVNNYRTMPEILKISSDLFYDASL 177
+L YR +I+ +S+ L Y L
Sbjct: 823 QLTVQYRMNRKIMSLSNKLTYAGKL 847
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F C++DEA Q ++P L P+ R VL GD QL P V ++ + L +S
Sbjct: 757 FDFCIVDEASQISQPVCLGPLFFSRR----FVLVGDHQQLPPLVVNREARALGMS 807
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F C++DEA Q ++P L P+ R VL GD QL P V + + L + SL +
Sbjct: 725 FDFCIVDEASQISQPICLGPLFCSKR----FVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL + V +L YR +I+ +S+ L Y+ L
Sbjct: 781 RLE-----------------QNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKL 815
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELS 60
F C++DEA Q ++P L P+ R VL GD QL P V + + L +S
Sbjct: 725 FDFCIVDEASQISQPICLGPLFCSKR----FVLVGDHQQLPPLVQNSEARDLGMS 775
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121
P +F V+DE QA E +P+ + +LAGD QL PT S L
Sbjct: 364 PENHFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHRQLPPTTISHKAALAGLSR 419
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPH 180
SL+ERL + + G V L YR I + +S+ Y L H
Sbjct: 420 SLMERLVEK----------HGAGA-----VRMLTVQYRMHQAITRWASEAMYHGQLTAH 463
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P +F V+DE QA E +P+ + +LAGD QL PT S
Sbjct: 364 PENHFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHRQLPPTTIS 409
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121
P YF V+DE QA E +P+ + +LAGD QL PT S L
Sbjct: 364 PEDYFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHRQLPPTTVSHRAALAGLSR 419
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPH 180
SL+ERL + + G +V L YR I+ +S+ Y H
Sbjct: 420 SLMERLAEK----------HGAG-----VVRMLTVQYRMHQAIMCWASEAMYHGQFTSH 463
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
P YF V+DE QA E +P+ + +LAGD QL PT S
Sbjct: 364 PEDYFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHRQLPPTTVS 409
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 59 LSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLE 118
L+T F +IDEA Q TE ++P L ++ GDP QL PTV S +
Sbjct: 1577 LATMGIKFDTVIIDEACQCTELSSIIP---LRYGGKRCIMVGDPNQLPPTVLSGAASNFK 1633
Query: 119 LRISLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
SL R+ ++ S + L YR P I K S FY L
Sbjct: 1634 YNQSLFVRM------EKNSSPYL------------LDVQYRMHPSISKFPSSEFYQGRL 1674
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51
F +IDEA Q TE ++P L ++ GDP QL PTV S
Sbjct: 1584 FDTVIIDEACQCTELSSIIP---LRYGGKRCIMVGDPNQLPPTVLS 1626
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 48/117 (41%), Gaps = 28/117 (23%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTV----FSKLGQQLELRI 121
F +C+IDEA Q P L P+ L + VL GD QL P V SK G L L
Sbjct: 1059 FDYCIIDEASQIPLPICLGPLQLAEK----FVLVGDHYQLPPLVKNSRTSKDGLSLSLFK 1114
Query: 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178
L E+ P VT L YR +I +SS+L Y +LV
Sbjct: 1115 LLSEK--------------------HPEAVTTLRLQYRMNEDINSLSSELIYGGNLV 1151
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTV 49
F +C+IDEA Q P L P+ L + VL GD QL P V
Sbjct: 1059 FDYCIIDEASQIPLPICLGPLQLAEK----FVLVGDHYQLPPLV 1098
>sp|Q05555|CP2AA_RABIT Cytochrome P450 2A10 OS=Oryctolagus cuniculus GN=CYP2A10 PE=1 SV=1
Length = 494
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 6 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLE----LST 61
+T VI E + T+ ++P+ L HR L G VF LG L+ S
Sbjct: 351 YTEAVIHEIQRFTD---MIPMGLAHRVTRDTKFRDFLLPKGAEVFPMLGSVLKDPKFFSK 407
Query: 62 PSGYFTHCVIDEAGQATEPEVLVPISLLHR 91
P ++ +DE GQ + + +P S+ R
Sbjct: 408 PREFYPQHFLDEKGQFKKSDAFMPFSVGKR 437
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F +IDE+ QATEP+ + P+ L ++ G+ V K + L SL E
Sbjct: 612 FRSILIDESTQATEPKCIGPVEL----GAKQLILGEITASWSCVMCKKAAKAGLSQSLFE 667
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
RL G P RL YR P + S++FY+ SL
Sbjct: 668 RLV--------------VLGIRP---IRLQVQYRMHPALSAFPSNIFYEGSL 702
>sp|P42835|EGT2_YEAST Protein EGT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=EGT2 PE=2 SV=2
Length = 1041
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 3 AGYFTHCVIDEAGQATEPEVLVPISLL-----HRDNGHVVLAGDPLQLGPTVFSKLGQQL 57
+GYFT E+GQATE L+PIS L + G V+ G +G +++ +
Sbjct: 814 SGYFTLTTCTESGQATEYGSLIPISTLDGSVIYTFTGESVVVGYSTTVGAAQYAQHTSLV 873
Query: 58 ELSTPSGYFTHCVIDE-----------AGQATEPEVLVPISLL 89
+ST G T +E A Q + LVP+S +
Sbjct: 874 PVSTIKGSKTSLSTEESVVAGYSTTVGAAQYAQHTSLVPVSTI 916
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 22/77 (28%)
Query: 13 EAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELSTPSGYFTHCVID 72
++ Q TE ++PIS L PTV + SGYFT
Sbjct: 786 QSAQVTEYGSMLPISTLET---------------PTVIMSTDE-------SGYFTLTTCT 823
Query: 73 EAGQATEPEVLVPISLL 89
E+GQATE L+PIS L
Sbjct: 824 ESGQATEYGSLIPISTL 840
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 66 FTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLE 125
F + ++DEA Q + P L P+ R ++ GD QL P V + + L SL +
Sbjct: 1180 FDYVILDEASQISMPVALGPL----RYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFK 1235
Query: 126 RLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
+ P V L YR +I+ +S+ L YD L
Sbjct: 1236 TFCEK----------------HPESVAELTLQYRMCGDIVTLSNFLIYDNKL 1271
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ECM32 PE=1
SV=1
Length = 1121
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 70 VIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTG 129
++DEA Q++E LVP+SL N V GD QL + FS + Q L SL ER+
Sbjct: 818 IMDEATQSSEASTLVPLSLPGIRN--FVFVGDEKQL--SSFSNIPQ---LETSLFERV-- 868
Query: 130 RFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASL 177
+ G Y L+ L YR P+I + Y+ L
Sbjct: 869 -----------LSNGTYKNPLM--LDTQYRMHPKISEFPIKKIYNGEL 903
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,326,600
Number of Sequences: 539616
Number of extensions: 3120065
Number of successful extensions: 6754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 6582
Number of HSP's gapped (non-prelim): 121
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)