Query psy3902
Match_columns 181
No_of_seqs 170 out of 1305
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:21:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 1.4E-29 4.8E-34 226.6 6.0 120 43-181 343-463 (646)
2 2gk6_A Regulator of nonsense t 99.9 7.8E-26 2.7E-30 201.8 6.5 116 42-180 319-434 (624)
3 2wjy_A Regulator of nonsense t 99.9 6.6E-25 2.2E-29 200.4 7.1 116 42-180 495-610 (800)
4 2xzl_A ATP-dependent helicase 99.9 2.8E-24 9.5E-29 196.4 6.4 115 42-180 498-612 (802)
5 3vkw_A Replicase large subunit 99.0 1E-10 3.4E-15 100.3 4.3 88 65-178 234-321 (446)
6 1w36_D RECD, exodeoxyribonucle 98.9 7.9E-10 2.7E-14 98.3 3.3 100 64-170 261-373 (608)
7 3e1s_A Exodeoxyribonuclease V, 98.6 2.7E-08 9.2E-13 88.0 3.3 84 64-177 278-363 (574)
8 3lfu_A DNA helicase II; SF1 he 98.5 3.6E-08 1.2E-12 87.3 4.1 89 65-176 213-301 (647)
9 3upu_A ATP-dependent DNA helic 98.5 5.4E-08 1.9E-12 83.5 3.7 89 64-176 127-215 (459)
10 1uaa_A REP helicase, protein ( 98.1 2.3E-06 7.8E-11 76.5 4.1 89 64-175 206-294 (673)
11 1pjr_A PCRA; DNA repair, DNA r 98.0 2.4E-06 8.2E-11 77.2 3.2 89 64-175 215-303 (724)
12 4b3f_X DNA-binding protein smu 97.8 4.3E-06 1.5E-10 74.6 1.8 49 2-54 363-411 (646)
13 3u4q_A ATP-dependent helicase/ 97.3 0.00012 4E-09 69.9 3.5 93 64-174 399-494 (1232)
14 1w36_B RECB, exodeoxyribonucle 97.2 0.00011 3.7E-09 69.8 2.7 85 65-174 377-463 (1180)
15 2gk6_A Regulator of nonsense t 96.9 0.00021 7.1E-09 63.5 1.1 45 3-50 337-381 (624)
16 2wjy_A Regulator of nonsense t 96.6 0.00061 2.1E-08 62.3 1.5 46 2-50 512-557 (800)
17 2xzl_A ATP-dependent helicase 96.2 0.0013 4.5E-08 60.2 1.4 42 5-49 517-558 (802)
18 2l8b_A Protein TRAI, DNA helic 93.3 0.026 8.9E-07 42.6 1.4 43 65-107 121-163 (189)
19 2zpa_A Uncharacterized protein 92.1 0.18 6E-06 45.3 5.2 39 64-106 254-292 (671)
20 3u4q_B ATP-dependent helicase/ 91.3 0.13 4.4E-06 48.7 3.6 91 67-173 203-298 (1166)
21 1w36_D RECD, exodeoxyribonucle 85.2 0.32 1.1E-05 42.9 1.8 44 5-49 262-305 (608)
22 2b8t_A Thymidine kinase; deoxy 84.4 0.61 2.1E-05 35.9 2.8 38 63-101 87-124 (223)
23 2j9r_A Thymidine kinase; TK1, 83.4 0.56 1.9E-05 36.0 2.3 37 64-101 100-136 (214)
24 3upu_A ATP-dependent DNA helic 83.1 0.75 2.6E-05 38.8 3.1 72 4-77 127-199 (459)
25 1xx6_A Thymidine kinase; NESG, 82.0 0.69 2.4E-05 34.6 2.3 36 65-101 81-116 (191)
26 1z3i_X Similar to RAD54-like; 80.6 0.74 2.5E-05 40.8 2.3 62 43-106 171-234 (644)
27 3e1s_A Exodeoxyribonuclease V, 80.5 0.56 1.9E-05 41.1 1.5 43 5-48 279-321 (574)
28 3lfu_A DNA helicase II; SF1 he 77.9 0.67 2.3E-05 40.5 1.2 42 5-47 213-254 (647)
29 2orw_A Thymidine kinase; TMTK, 76.9 1.3 4.4E-05 32.7 2.3 37 64-101 75-111 (184)
30 1g5t_A COB(I)alamin adenosyltr 76.3 2 7E-05 32.4 3.3 41 61-102 116-162 (196)
31 1rif_A DAR protein, DNA helica 76.3 1.1 3.6E-05 35.0 1.8 37 42-80 204-240 (282)
32 3vkw_A Replicase large subunit 76.1 0.93 3.2E-05 38.6 1.5 45 5-51 234-278 (446)
33 3b6e_A Interferon-induced heli 75.4 0.56 1.9E-05 34.5 -0.1 37 43-79 133-176 (216)
34 3e2i_A Thymidine kinase; Zn-bi 74.9 1.7 5.7E-05 33.5 2.5 36 64-100 100-135 (219)
35 1w4r_A Thymidine kinase; type 74.3 1.5 5.2E-05 33.1 2.1 34 65-100 91-124 (195)
36 3h1t_A Type I site-specific re 74.2 2.3 7.8E-05 36.8 3.5 62 42-103 274-342 (590)
37 1uaa_A REP helicase, protein ( 72.6 1.4 4.7E-05 39.0 1.7 44 4-48 206-249 (673)
38 2fz4_A DNA repair protein RAD2 71.7 1.8 6.2E-05 33.1 2.0 37 43-81 172-208 (237)
39 1z63_A Helicase of the SNF2/RA 70.8 1.1 3.6E-05 37.9 0.5 60 43-105 129-190 (500)
40 3mwy_W Chromo domain-containin 70.5 0.86 2.9E-05 41.4 -0.1 63 43-107 346-410 (800)
41 2pl3_A Probable ATP-dependent 69.1 1 3.6E-05 33.9 0.1 37 43-79 147-185 (236)
42 3dkp_A Probable ATP-dependent 66.9 1.4 4.8E-05 33.3 0.5 38 42-79 149-189 (245)
43 2gxq_A Heat resistant RNA depe 65.2 1.3 4.4E-05 32.4 -0.0 36 43-78 121-157 (207)
44 1vec_A ATP-dependent RNA helic 64.5 1.6 5.4E-05 31.9 0.4 37 43-79 123-160 (206)
45 3iuy_A Probable ATP-dependent 62.4 2 6.8E-05 32.1 0.5 36 43-78 144-180 (228)
46 3ber_A Probable ATP-dependent 62.2 1.9 6.5E-05 33.0 0.4 38 42-79 161-200 (249)
47 1pjr_A PCRA; DNA repair, DNA r 61.5 2.2 7.4E-05 38.3 0.7 44 4-48 215-258 (724)
48 1qde_A EIF4A, translation init 61.5 1.9 6.4E-05 32.0 0.3 37 43-79 132-169 (224)
49 2oca_A DAR protein, ATP-depend 61.4 4.4 0.00015 34.1 2.6 38 42-81 204-241 (510)
50 1q0u_A Bstdead; DEAD protein, 60.2 1.7 5.9E-05 32.3 -0.2 37 42-78 126-163 (219)
51 1wp9_A ATP-dependent RNA helic 60.0 3.5 0.00012 33.6 1.7 37 43-79 102-139 (494)
52 1t6n_A Probable ATP-dependent 59.9 2.2 7.5E-05 31.6 0.4 37 43-79 135-172 (220)
53 3bor_A Human initiation factor 59.3 2.2 7.6E-05 32.2 0.3 36 43-78 150-186 (237)
54 2orv_A Thymidine kinase; TP4A 58.0 7 0.00024 30.3 3.0 37 64-102 89-125 (234)
55 1wrb_A DJVLGB; RNA helicase, D 57.3 2.5 8.4E-05 32.2 0.3 36 43-78 151-187 (253)
56 2oxc_A Probable ATP-dependent 57.0 2.3 7.7E-05 32.0 0.0 37 43-79 143-180 (230)
57 2fwr_A DNA repair protein RAD2 56.4 4.9 0.00017 33.4 2.0 39 42-82 171-209 (472)
58 3fe2_A Probable ATP-dependent 54.1 3 0.0001 31.5 0.3 37 43-79 153-190 (242)
59 3llm_A ATP-dependent RNA helic 52.7 3.3 0.00011 31.3 0.3 34 42-77 155-188 (235)
60 3oiy_A Reverse gyrase helicase 52.5 2.4 8.2E-05 34.7 -0.5 32 43-75 118-149 (414)
61 3ly5_A ATP-dependent RNA helic 51.8 3.1 0.00011 32.1 0.0 37 43-79 177-215 (262)
62 1s2m_A Putative ATP-dependent 51.3 3.6 0.00012 33.2 0.3 40 42-81 139-179 (400)
63 3pey_A ATP-dependent RNA helic 51.2 3.4 0.00011 33.0 0.2 38 42-79 121-159 (395)
64 3fmo_B ATP-dependent RNA helic 50.5 3.1 0.00011 32.9 -0.1 37 43-79 211-249 (300)
65 2l8b_A Protein TRAI, DNA helic 50.2 3 0.0001 31.3 -0.3 41 7-47 123-163 (189)
66 1hv8_A Putative ATP-dependent 50.2 3.6 0.00012 32.4 0.2 38 43-80 124-162 (367)
67 1fuu_A Yeast initiation factor 49.9 3.8 0.00013 32.8 0.3 36 43-78 139-175 (394)
68 2z0m_A 337AA long hypothetical 49.8 3.5 0.00012 32.2 0.0 37 43-79 106-143 (337)
69 3fho_A ATP-dependent RNA helic 49.7 4 0.00014 34.7 0.4 38 42-79 235-273 (508)
70 3o8b_A HCV NS3 protease/helica 49.7 7.1 0.00024 34.9 2.0 38 42-82 297-334 (666)
71 3fht_A ATP-dependent RNA helic 48.9 3.6 0.00012 33.1 -0.0 36 43-78 144-181 (412)
72 3eiq_A Eukaryotic initiation f 48.7 4.2 0.00014 32.8 0.3 37 42-78 159-196 (414)
73 1xti_A Probable ATP-dependent 48.0 4.5 0.00015 32.4 0.4 37 43-79 129-166 (391)
74 2i4i_A ATP-dependent RNA helic 47.7 4.4 0.00015 32.8 0.3 36 43-78 152-188 (417)
75 2r2a_A Uncharacterized protein 46.2 19 0.00063 26.8 3.6 39 64-102 86-132 (199)
76 4gl2_A Interferon-induced heli 45.7 5 0.00017 35.2 0.4 38 42-79 106-150 (699)
77 2j0s_A ATP-dependent RNA helic 42.2 5.8 0.0002 32.1 0.2 38 43-80 156-194 (410)
78 4a2p_A RIG-I, retinoic acid in 41.4 6.3 0.00021 33.2 0.3 39 43-81 106-146 (556)
79 3fmp_B ATP-dependent RNA helic 41.3 5.4 0.00018 33.3 -0.1 36 43-78 211-248 (479)
80 2ykg_A Probable ATP-dependent 39.1 6.1 0.00021 34.6 -0.1 39 43-81 112-152 (696)
81 3tbk_A RIG-I helicase domain; 39.1 7 0.00024 32.8 0.2 39 43-81 103-143 (555)
82 3dmq_A RNA polymerase-associat 37.0 13 0.00044 34.5 1.7 63 43-107 249-321 (968)
83 2db3_A ATP-dependent RNA helic 36.4 9.1 0.00031 31.7 0.6 37 43-79 180-217 (434)
84 3crv_A XPD/RAD3 related DNA he 30.5 15 0.00052 31.5 1.0 37 42-79 148-187 (551)
85 2p6r_A Afuhel308 helicase; pro 30.4 11 0.00038 33.2 0.1 37 42-78 114-151 (702)
86 4a2q_A RIG-I, retinoic acid in 30.0 11 0.00037 34.0 -0.0 38 43-80 347-386 (797)
87 2zj8_A DNA helicase, putative 29.9 9 0.00031 34.0 -0.6 37 42-78 114-151 (720)
88 2va8_A SSO2462, SKI2-type heli 28.5 9 0.00031 33.9 -0.8 37 42-78 121-158 (715)
89 2i3b_A HCR-ntpase, human cance 28.5 25 0.00084 25.8 1.7 24 63-86 103-128 (189)
90 2w00_A HSDR, R.ECOR124I; ATP-b 23.8 18 0.00061 34.0 0.2 62 42-103 375-439 (1038)
91 3end_A Light-independent proto 23.1 98 0.0033 23.8 4.5 35 64-102 155-189 (307)
92 3i5x_A ATP-dependent RNA helic 23.1 8.7 0.0003 32.7 -1.9 37 43-79 202-240 (563)
93 3sqw_A ATP-dependent RNA helic 23.0 8.8 0.0003 33.0 -1.9 37 43-79 151-189 (579)
94 2vl7_A XPD; helicase, unknown 22.8 13 0.00045 31.9 -0.8 36 42-77 144-187 (540)
95 4a2w_A RIG-I, retinoic acid in 22.5 17 0.00059 33.5 -0.2 38 43-80 347-386 (936)
96 4ddu_A Reverse gyrase; topoiso 22.3 12 0.00042 35.3 -1.2 32 43-75 175-206 (1104)
97 2xau_A PRE-mRNA-splicing facto 21.5 23 0.00077 32.1 0.4 35 42-76 185-219 (773)
98 1gm5_A RECG; helicase, replica 20.2 33 0.0011 31.1 1.2 31 43-77 472-502 (780)
99 3kl4_A SRP54, signal recogniti 20.2 68 0.0023 26.9 3.1 40 63-103 177-222 (433)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.95 E-value=1.4e-29 Score=226.61 Aligned_cols=120 Identities=32% Similarity=0.445 Sum_probs=104.1
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhh
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~ 121 (181)
++||++|+++++.... ..+....||+||||||+|++||++|+|+. +++++||||||+||||++.+..+...+++.
T Consensus 343 ~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~----~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~ 418 (646)
T 4b3f_X 343 ANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL----KARKCILAGDHKQLPPTTVSHKAALAGLSL 418 (646)
T ss_dssp CSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG----GSSEEEEEECTTSCCCCCSCHHHHHTTTTC
T ss_pred cceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhcc----ccceEEEcCCccccCceecchhhhhccccc
Confidence 6799999998876432 22456789999999999999999999997 468999999999999999998888889999
Q ss_pred hHHHHHhcCcccccccccccccCCcCCccccchhhhhcChhHHHHhhhhhhcCCCcccCC
Q psy3902 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPHN 181 (181)
Q Consensus 122 slf~rl~~~~~~~~~~~~~~~~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~L~~~~ 181 (181)
|+|+|+... +.+....+|++||||||+|++|+|+.||+|+|++++
T Consensus 419 SlferL~~~---------------~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~ 463 (646)
T 4b3f_X 419 SLMERLAEE---------------YGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHS 463 (646)
T ss_dssp CHHHHHHHH---------------HGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECT
T ss_pred hHHHHHHHh---------------cCCceeeecccccCCcHHHHhhhHHhhcCCccccCc
Confidence 999999875 234456789999999999999999999999998753
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.92 E-value=7.8e-26 Score=201.81 Aligned_cols=116 Identities=34% Similarity=0.452 Sum_probs=99.2
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhh
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~ 121 (181)
.++||++||++++... +....||+||||||+|+++|++++|+.. +++++|++|||+||||++.+..+...++..
T Consensus 319 ~~~vI~~T~~~~~~~~---l~~~~fd~viIDEAsQ~~e~~~li~l~~---~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~ 392 (624)
T 2gk6_A 319 NADVICCTCVGAGDPR---LAKMQFRSILIDESTQATEPECMVPVVL---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQ 392 (624)
T ss_dssp TCSEEEEETGGGGCGG---GTTCCCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCSCHHHHHHTTTS
T ss_pred cCCEEEEcChhhcchh---hhcCCCCEEEEecccccCcHHHHHHHHh---cCCeEEEecChhccCCeeecHHHHHcCCch
Confidence 4789999999987532 3456899999999999999999999875 368999999999999999987777778889
Q ss_pred hHHHHHhcCcccccccccccccCCcCCccccchhhhhcChhHHHHhhhhhhcCCCcccC
Q psy3902 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPH 180 (181)
Q Consensus 122 slf~rl~~~~~~~~~~~~~~~~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~L~~~ 180 (181)
|+|+|+...+. ..++|++||||||+|++|+|..||+|+|.++
T Consensus 393 Slferl~~~~~-----------------~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~ 434 (624)
T 2gk6_A 393 SLFERLVVLGI-----------------RPIRLQVQYRMHPALSAFPSNIFYEGSLQNG 434 (624)
T ss_dssp CHHHHHHHTTC-----------------CCEECCEECSSCHHHHHHHHHHHSTTCCEES
T ss_pred hHHHHHHhcCC-----------------CcEEehhhhCcChhHHhhhHHhhcCcccccC
Confidence 99999986521 1257999999999999999999999998754
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.91 E-value=6.6e-25 Score=200.43 Aligned_cols=116 Identities=34% Similarity=0.452 Sum_probs=99.2
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhh
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~ 121 (181)
.++||++|+++++... +....||+||||||+|+++++.++|+.. +++++|++|||+||||++.+..+...++..
T Consensus 495 ~a~VI~~T~~~~~~~~---l~~~~fd~viIDEAsQ~~e~~~li~l~~---~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~ 568 (800)
T 2wjy_A 495 NADVICCTCVGAGDPR---LAKMQFRSILIDESTQATEPECMVPVVL---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQ 568 (800)
T ss_dssp HCSEEEEETGGGGCTT---TTTCCCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTS
T ss_pred cCCEEEEchhhhCChh---hhcCCCCEEEEECCCCCCcHHHHHHHHh---cCCeEEEecccccCCCeecchhhhhcCcch
Confidence 4789999999987532 3456899999999999999999999874 368999999999999999987777778899
Q ss_pred hHHHHHhcCcccccccccccccCCcCCccccchhhhhcChhHHHHhhhhhhcCCCcccC
Q psy3902 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPH 180 (181)
Q Consensus 122 slf~rl~~~~~~~~~~~~~~~~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~L~~~ 180 (181)
|+|+|+...+. ..++|++||||||+|++|+|..||+|+|.++
T Consensus 569 SlFerL~~~g~-----------------~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~ 610 (800)
T 2wjy_A 569 SLFERLVVLGI-----------------RPIRLQVQYRMHPALSAFPSNIFYEGSLQNG 610 (800)
T ss_dssp CHHHHHHHTTC-----------------CCEECCEECSSCHHHHHHHHHHHSTTCCEES
T ss_pred HHHHHHHhCCC-----------------CceEehhhcCCCcHHHHhhHHHhcCCccccC
Confidence 99999986521 1257999999999999999999999998754
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.8e-24 Score=196.40 Aligned_cols=115 Identities=32% Similarity=0.473 Sum_probs=97.8
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhh
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRI 121 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~ 121 (181)
.++||++|+.+++... +.. .||+||||||+|+++++.++|+.. +++++|++|||+||+|++.+..+...+++.
T Consensus 498 ~a~VI~~T~~~~~~~~---L~~-~fd~viIDEA~q~~e~~~li~l~~---~~~~lilvGD~~QL~pvv~s~~a~~~gl~~ 570 (802)
T 2xzl_A 498 KADVVCCTCVGAGDKR---LDT-KFRTVLIDESTQASEPECLIPIVK---GAKQVILVGDHQQLGPVILERKAADAGLKQ 570 (802)
T ss_dssp TCSEEEEETTGGGCTT---CCS-CCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTC
T ss_pred cCCEEEechhhcChHH---Hhc-cCCEEEEECccccchHHHHHHHHh---CCCEEEEEeCccccCCeechhhhhhcCCch
Confidence 4789999999887432 333 899999999999999999999874 368999999999999999887777778889
Q ss_pred hHHHHHhcCcccccccccccccCCcCCccccchhhhhcChhHHHHhhhhhhcCCCcccC
Q psy3902 122 SLLERLTGRFLYSRDMSRFYATGGYDPRLVTRLVNNYRTMPEILKISSDLFYDASLVPH 180 (181)
Q Consensus 122 slf~rl~~~~~~~~~~~~~~~~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~L~~~ 180 (181)
|+|+|+...+. ..++|++||||||+|++|+|..||+|+|.++
T Consensus 571 slferl~~~~~-----------------~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~ 612 (802)
T 2xzl_A 571 SLFERLISLGH-----------------VPIRLEVQYRMNPYLSEFPSNMFYEGSLQNG 612 (802)
T ss_dssp CHHHHHHHTTC-----------------CCEECCEECSSCHHHHHHHHHHHSTTCCEES
T ss_pred hHHHHHHhcCC-----------------CceEeeeecCCChHHHHHHHHHhcCCccccC
Confidence 99999986521 2357999999999999999999999999753
No 5
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.04 E-value=1e-10 Score=100.26 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=60.5
Q ss_pred ccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCcccccccccccccC
Q psy3902 65 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATG 144 (181)
Q Consensus 65 ~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~~~ 144 (181)
.+|++|||||+++........+... +.+++|++||+.||||+...+. ..+..+ |.++...
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~--~~~~vilvGD~~Qlp~v~~~~~---~~~~~~-~~~l~~~-------------- 293 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMS--LCDIAYVYGDTQQIPYINRVTG---FPYPAH-FAKLEVD-------------- 293 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHT--TCSEEEEEECTTSCCCCCCSTT---CCCCHH-HHSCCCS--------------
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhC--CCCEEEEecCcccccCcccCCC---ccchhh-hhhcccC--------------
Confidence 3899999999999655544333333 4599999999999999866542 111111 2222111
Q ss_pred CcCCccccchhhhhcChhHHHHhhhhhhcCCCcc
Q psy3902 145 GYDPRLVTRLVNNYRTMPEILKISSDLFYDASLV 178 (181)
Q Consensus 145 ~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~L~ 178 (181)
....++.+|||+.+++.|.|.. |++++.
T Consensus 294 -----~~~~~~~SyR~p~dv~~lLs~l-Y~~~V~ 321 (446)
T 3vkw_A 294 -----EVETRRTTLRCPADVTHFLNQR-YEGHVM 321 (446)
T ss_dssp -----EEEEECEESSCCHHHHHHHHTT-SSSCCE
T ss_pred -----cEEEeeeEeCCCHHHHHHHHhh-cCCceE
Confidence 1234789999999999999985 888765
No 6
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.86 E-value=7.9e-10 Score=98.30 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=64.8
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccch------hccchhhhHHHHHhcCccccccc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLG------QQLELRISLLERLTGRFLYSRDM 137 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~------~~~~~~~slf~rl~~~~~~~~~~ 137 (181)
..+|++|||||+|+..+..-..+... +...++||+||+.||+|+...... .+.+++.+.++++.+..-+..
T Consensus 261 l~~d~lIIDEAsml~~~~~~~Ll~~l-~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~-- 337 (608)
T 1w36_D 261 LHLDVLVVDEASMIDLPMMSRLIDAL-PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV-- 337 (608)
T ss_dssp CSCSEEEECSGGGCBHHHHHHHHHTC-CTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCC--
T ss_pred CCCCEEEEechhhCCHHHHHHHHHhC-CCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccc--
Confidence 36999999999999865332222222 356899999999999998664321 134677788888766421100
Q ss_pred ccccccCCcCCc-----cccchhhhhcChhH--HHHhhhh
Q psy3902 138 SRFYATGGYDPR-----LVTRLVNNYRTMPE--ILKISSD 170 (181)
Q Consensus 138 ~~~~~~~~~~~~-----~~~~L~~qyR~~~~--I~~~~s~ 170 (181)
.. +..... ..+.|+++||++++ |..+.+.
T Consensus 338 ---~~-~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~ 373 (608)
T 1w36_D 338 ---PA-GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 (608)
T ss_dssp ---CC-CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHH
T ss_pred ---cc-ccccccccccccEEecceeeeeCCcchHHHHHHH
Confidence 00 000011 15789999999876 8888765
No 7
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.55 E-value=2.7e-08 Score=87.95 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=58.1
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCccccccccccccc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYAT 143 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~~ 143 (181)
..+|++|||||+++........+... +...++|++||+.||+|+.... .|..+...
T Consensus 278 ~~~dvlIIDEasml~~~~~~~Ll~~~-~~~~~lilvGD~~QL~~v~~g~----------~~~~l~~~------------- 333 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDALMLSLLAAV-PPGARVLLVGDTDQLPPVDAGL----------PLLALAQA------------- 333 (574)
T ss_dssp CSCSEEEECCGGGCCHHHHHHHHTTS-CTTCEEEEEECTTSCCCSSSCC----------HHHHHHHH-------------
T ss_pred ccCCEEEEcCccCCCHHHHHHHHHhC-cCCCEEEEEecccccCCccCCc----------HHHHHHhc-------------
Confidence 46899999999999765443333322 2568999999999999985432 33333331
Q ss_pred CCcCCccccchhhhhcCh--hHHHHhhhhhhcCCCc
Q psy3902 144 GGYDPRLVTRLVNNYRTM--PEILKISSDLFYDASL 177 (181)
Q Consensus 144 ~~~~~~~~~~L~~qyR~~--~~I~~~~s~~fY~g~L 177 (181)
...+.|+++||+. +.|..+.+. +..|.+
T Consensus 334 -----~~~~~L~~~~R~~~~s~I~~~a~~-i~~g~~ 363 (574)
T 3e1s_A 334 -----APTIKLTQVYRQAAKNPIIQAAHG-LLHGEA 363 (574)
T ss_dssp -----SCEEECCCCCHHHHTCHHHHHHHH-HHTTCC
T ss_pred -----CCEEEcceeEeCCCccHHHHHHHH-HhCCCC
Confidence 1246799999998 679998776 455544
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.55 E-value=3.6e-08 Score=87.33 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=58.4
Q ss_pred ccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCcccccccccccccC
Q psy3902 65 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYATG 144 (181)
Q Consensus 65 ~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~~~ 144 (181)
.|++|+|||+-..+ +..+-.+.......+++++|||++|- +..- .+.....|.++...
T Consensus 213 ~~~~ilVDE~QD~~-~~q~~ll~~l~~~~~~l~~vGD~~Qs---Iy~f----rga~~~~~~~~~~~-------------- 270 (647)
T 3lfu_A 213 RFTNILVDEFQDTN-NIQYAWIRLLAGDTGKVMIVGDDDQS---IYGW----RGAQVENIQRFLND-------------- 270 (647)
T ss_dssp HCCEEEESSGGGCC-HHHHHHHHHHHTTTCEEEEEECGGGC---CCGG----GTCCTTHHHHHHHH--------------
T ss_pred hCCEEEEECcccCC-HHHHHHHHHHhcCCCEEEEEcCchhh---hccc----cCCCHHHHHHHHHh--------------
Confidence 59999999995554 44333333222246899999999992 2211 12234455555433
Q ss_pred CcCCccccchhhhhcChhHHHHhhhhhhcCCC
Q psy3902 145 GYDPRLVTRLVNNYRTMPEILKISSDLFYDAS 176 (181)
Q Consensus 145 ~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~ 176 (181)
+.....+.|++||||++.|.++.|..|+.+.
T Consensus 271 -~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~ 301 (647)
T 3lfu_A 271 -FPGAETIRLEQNYRSTSNILSAANALIENNN 301 (647)
T ss_dssp -CTTCEEEEECBCSSSCHHHHHHHHHHHTTCS
T ss_pred -CCCCeEEEcccCCCCCHHHHHHHHHHHHhcc
Confidence 1123346799999999999999999998654
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.50 E-value=5.4e-08 Score=83.49 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=59.4
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCccccccccccccc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYAT 143 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~~ 143 (181)
..++++|||||+++... .+-.+....+...+++++||+.||+|+........ + ..+...
T Consensus 127 ~~~~~iiiDE~~~~~~~-~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~--l-----~~~~~~------------- 185 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRK-LFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAY--I-----SPFFTH------------- 185 (459)
T ss_dssp SSCSEEEESCGGGCCHH-HHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCC--C-----CGGGTC-------------
T ss_pred cCCCEEEEECchhCCHH-HHHHHHHhccCCCEEEEECCHHHcCCccCCcchHh--H-----HHHHhc-------------
Confidence 46899999999988643 33333322224679999999999999876532111 1 111111
Q ss_pred CCcCCccccchhhhhcChhHHHHhhhhhhcCCC
Q psy3902 144 GGYDPRLVTRLVNNYRTMPEILKISSDLFYDAS 176 (181)
Q Consensus 144 ~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g~ 176 (181)
.....+.|+++||+++.|.++.+.+.-+..
T Consensus 186 ---~~~~~~~L~~~~R~~~~I~~~a~~lr~g~~ 215 (459)
T 3upu_A 186 ---KDFYQCELTEVKRSNAPIIDVATDVRNGKW 215 (459)
T ss_dssp ---TTEEEEECCCCCCCCCHHHHHHHHHHTTCC
T ss_pred ---CCCcEEeceeeeeCCcHHHHHHHHHHcCCC
Confidence 112346799999999999999998765544
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.06 E-value=2.3e-06 Score=76.55 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=56.6
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCccccccccccccc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYAT 143 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~~ 143 (181)
..|++|+|||+-. +.+..+-.+.......+++++|||++|- +..- .|-....|.++...
T Consensus 206 ~~~~~ilVDEfQD-t~~~Q~~ll~~L~~~~~~l~~vGD~~Qs---Iy~f----rga~~~~~~~~~~~------------- 264 (673)
T 1uaa_A 206 NKIRYLLVDEYQD-TNTSQYELVKLLVGSRARFTVVGDDDQS---IYSW----RGARPQNLVLLSQD------------- 264 (673)
T ss_dssp TTCSEEEESCGGG-CBHHHHHHHHHHHTTTCCEEEECCGGGC---CCGG----GTBCTTHHHHHHHH-------------
T ss_pred hhCcEEEEecccc-CCHHHHHHHHHHhcCCCeEEEEeCchhh---hhhc----cCCCHHHHHHHHHh-------------
Confidence 4699999999944 4444443333222235789999999983 2221 12223344444432
Q ss_pred CCcCCccccchhhhhcChhHHHHhhhhhhcCC
Q psy3902 144 GGYDPRLVTRLVNNYRTMPEILKISSDLFYDA 175 (181)
Q Consensus 144 ~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g 175 (181)
++....+.|.++||+++.|.++.|.+|..+
T Consensus 265 --~~~~~~~~L~~nyRs~~~I~~~an~~~~~~ 294 (673)
T 1uaa_A 265 --FPALKVIKLEQNYRSSGRILKAANILIANN 294 (673)
T ss_dssp --STTCEEECCCCBSSSCHHHHHHHHHHHHTS
T ss_pred --CCCCeEEECCCCCCCChHHHHHHHHHHHhc
Confidence 111234679999999999999999988754
No 11
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.00 E-value=2.4e-06 Score=77.24 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=55.9
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCccccccccccccc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYAT 143 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~~ 143 (181)
..|++|+|||+ |-+.+..+--+.......+.+++|||+.|- +..- .|.....+.++.+.
T Consensus 215 ~rf~~IlVDEf-QDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs---IY~f----RGA~~~~~~~f~~~------------- 273 (724)
T 1pjr_A 215 YKFQYIHIDEY-QDTNRAQYTLVKKLAERFQNICAVGDADQS---IYRW----RGADIQNILSFERD------------- 273 (724)
T ss_dssp HHCSEEEESSG-GGCCHHHHHHHHHHHTTTCCEEEEECGGGC---CCGG----GTCCTHHHHTHHHH-------------
T ss_pred hhCCEEEEEhH-hcCCHHHHHHHHHHHcCCCeEEEEECchhh---cccc----cCCCHHHHHHHHHH-------------
Confidence 36899999999 544544433333222234689999999994 2221 12222333333322
Q ss_pred CCcCCccccchhhhhcChhHHHHhhhhhhcCC
Q psy3902 144 GGYDPRLVTRLVNNYRTMPEILKISSDLFYDA 175 (181)
Q Consensus 144 ~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~g 175 (181)
++....+.|.++||+++.|.++.|.++..+
T Consensus 274 --~~~~~~i~L~~NyRSt~~Il~~an~li~~n 303 (724)
T 1pjr_A 274 --YPNAKVILLEQNYRSTKRILQAANEVIEHN 303 (724)
T ss_dssp --STTCEEEEECBCSSSCHHHHHHHHHHHTTC
T ss_pred --CCCCcEEECCCCCCCCHHHHHHHHHHHHhC
Confidence 112234679999999999999999998765
No 12
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.84 E-value=4.3e-06 Score=74.59 Aligned_cols=49 Identities=41% Similarity=0.613 Sum_probs=42.4
Q ss_pred CCCCCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccceecccc
Q psy3902 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLG 54 (181)
Q Consensus 2 ~~~~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T~~~~~ 54 (181)
+..+|+++|||||+|+.++++|.|+. ...+++++||+.|+..++.+..+
T Consensus 363 ~~~~Fd~vIIDEAsQ~~e~~~lipL~----~~~~~ILVGD~~QLpP~v~~~~a 411 (646)
T 4b3f_X 363 PESYFDVVVIDECAQALEASCWIPLL----KARKCILAGDHKQLPPTTVSHKA 411 (646)
T ss_dssp CTTCCSEEEETTGGGSCHHHHTTTGG----GSSEEEEEECTTSCCCCCSCHHH
T ss_pred hhccCCEEEEcCccccchHHHHhhcc----ccceEEEcCCccccCceecchhh
Confidence 46789999999999999999999997 35689999999999887766544
No 13
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.29 E-value=0.00012 Score=69.89 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=56.8
Q ss_pred CccceeeeccccCCCcchhhhhhhccccC---CCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCcccccccccc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRD---NGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRF 140 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~---~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~ 140 (181)
..|++|+|||+ |-+-+..+--+...... ...+++|||++|- +..- .|-...+|...... |...
T Consensus 399 ~~~~~IlVDEf-QDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Qs---IY~F----RgAd~~~f~~~~~~--~~~~---- 464 (1232)
T 3u4q_A 399 EQFHEVLVDEY-QDTNLVQESILQLVTSGPEETGNLFMVGDVKQS---IYRF----RLAEPLLFLSKYKR--FTES---- 464 (1232)
T ss_dssp HHCSEEEESSG-GGCCHHHHHHHHHHSCSCTTSSCEEEEECGGGC---CCTT----TTCCTHHHHHHHHH--SBSS----
T ss_pred hCCCEEEEEcc-ccCCHHHHHHHHHHhcCCCCCCcEEEEeCchHH---hHhc----cCCCHHHHHHHHHH--hhhh----
Confidence 35999999999 44455444444333222 4689999999992 2221 12234455554433 1100
Q ss_pred cccCCcCCccccchhhhhcChhHHHHhhhhhhcC
Q psy3902 141 YATGGYDPRLVTRLVNNYRTMPEILKISSDLFYD 174 (181)
Q Consensus 141 ~~~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~ 174 (181)
. ..+...+.|.++||+.++|.+++|.+|-.
T Consensus 465 ---~-~~~~~~i~L~~NyRS~~~Il~~~n~lf~~ 494 (1232)
T 3u4q_A 465 ---G-EGTGRKIDLNKNFRSRADILDSTNFLFKQ 494 (1232)
T ss_dssp ---C-TTSCEEEEECEESSSCHHHHHHHHHHHHT
T ss_pred ---c-CCCCcEeECCCCCCCChHHHHHHHHHHhh
Confidence 0 01123467999999999999999998853
No 14
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=97.24 E-value=0.00011 Score=69.82 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=52.1
Q ss_pred ccceeeeccccCCCcchhhhhhhcccc--CCCeEEEEcCCCCCCceEeccchhccchhhhHHHHHhcCcccccccccccc
Q psy3902 65 YFTHCVIDEAGQATEPEVLVPISLLHR--DNGHVVLAGDPLQLGPTVFSKLGQQLELRISLLERLTGRFLYSRDMSRFYA 142 (181)
Q Consensus 65 ~fd~vIIDEAsq~~e~~~l~~l~~~~~--~~~~~vlvGD~~QL~P~v~~~~~~~~~~~~slf~rl~~~~~~~~~~~~~~~ 142 (181)
+|++|+|||. |-+-+..+--+..... ....+++|||++|- |..-. |-....|.+....
T Consensus 377 r~~~ilVDEf-QDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQS---IY~FR----GAd~~~~~~~~~~------------ 436 (1180)
T 1w36_B 377 RFPVAMIDEF-QDTDPQQYRIFRRIWHHQPETALLLIGDPKQA---IYAFR----GADIFTYMKARSE------------ 436 (1180)
T ss_dssp HCSEEEECSG-GGCCHHHHHHHHHHHTTCTTCEEEEEECGGGC---CCGGG----TCCHHHHHHHHHH------------
T ss_pred CCCEEEEECC-ccCCHHHHHHHHHHHcCCCCCeEEEEECCccc---cccCc----CCCHHHHHHHHHh------------
Confidence 4999999998 6656555544432221 24689999999993 22210 1111122222211
Q ss_pred cCCcCCccccchhhhhcChhHHHHhhhhhhcC
Q psy3902 143 TGGYDPRLVTRLVNNYRTMPEILKISSDLFYD 174 (181)
Q Consensus 143 ~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~ 174 (181)
. ...+.|.+|||+.+.|.+++|.+|-.
T Consensus 437 ---~--~~~~~L~~NyRS~~~Il~~~N~lf~~ 463 (1180)
T 1w36_B 437 ---V--HAHYTLDTNWRSAPGMVNSVNKLFSQ 463 (1180)
T ss_dssp ---C--CCEEECCEETTSCHHHHHHHHHHHHS
T ss_pred ---c--CCceeCCCCcCCcHHHHHHHHHHHhc
Confidence 0 11356999999999999999998754
No 15
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.92 E-value=0.00021 Score=63.53 Aligned_cols=45 Identities=47% Similarity=0.739 Sum_probs=37.8
Q ss_pred CCCCcEEEEecCCCCCCccccccccccccCCCceEecCCCccccccee
Q psy3902 3 AGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVF 50 (181)
Q Consensus 3 ~~~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T~ 50 (181)
..+|++++||||+|+.+++++.|+.. ...+++++||+.|+..+..
T Consensus 337 ~~~fd~viIDEAsQ~~e~~~li~l~~---~~~~~ilvGD~~QL~p~v~ 381 (624)
T 2gk6_A 337 KMQFRSILIDESTQATEPECMVPVVL---GAKQLILVGDHCQLGPVVM 381 (624)
T ss_dssp TCCCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCS
T ss_pred cCCCCEEEEecccccCcHHHHHHHHh---cCCeEEEecChhccCCeee
Confidence 46899999999999999999988874 4568999999999855543
No 16
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.57 E-value=0.00061 Score=62.34 Aligned_cols=46 Identities=46% Similarity=0.725 Sum_probs=37.9
Q ss_pred CCCCCcEEEEecCCCCCCccccccccccccCCCceEecCCCccccccee
Q psy3902 2 PAGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVF 50 (181)
Q Consensus 2 ~~~~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T~ 50 (181)
....|++++||||+|..+++++.|+.. ...+++++||+.|+..+..
T Consensus 512 ~~~~fd~viIDEAsQ~~e~~~li~l~~---~~~~~ilvGD~~QLpPvv~ 557 (800)
T 2wjy_A 512 AKMQFRSILIDESTQATEPECMVPVVL---GAKQLILVGDHCQLGPVVM 557 (800)
T ss_dssp TTCCCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCC
T ss_pred hcCCCCEEEEECCCCCCcHHHHHHHHh---cCCeEEEecccccCCCeec
Confidence 346899999999999999998888763 4569999999999855543
No 17
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0013 Score=60.15 Aligned_cols=42 Identities=48% Similarity=0.782 Sum_probs=35.9
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccce
Q psy3902 5 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTV 49 (181)
Q Consensus 5 ~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T 49 (181)
+|++++||||+|+.+++++.|+.. ...+++++||+.|+..+.
T Consensus 517 ~fd~viIDEA~q~~e~~~li~l~~---~~~~lilvGD~~QL~pvv 558 (802)
T 2xzl_A 517 KFRTVLIDESTQASEPECLIPIVK---GAKQVILVGDHQQLGPVI 558 (802)
T ss_dssp CCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCC
T ss_pred cCCEEEEECccccchHHHHHHHHh---CCCEEEEEeCccccCCee
Confidence 899999999999999998888763 456999999999975443
No 18
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.33 E-value=0.026 Score=42.65 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=35.0
Q ss_pred ccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCCc
Q psy3902 65 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGP 107 (181)
Q Consensus 65 ~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~P 107 (181)
.=+++|||||+++..-+++.-+..+....-|+||+||..|.+-
T Consensus 121 p~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 121 PGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp CCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCS
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccC
Confidence 3469999999999888888777655445689999999999764
No 19
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.13 E-value=0.18 Score=45.27 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=28.7
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCCCCC
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLG 106 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~QL~ 106 (181)
...|++|||||+.++.|-.-..+. ...+++++....+..
T Consensus 254 ~~~dlliVDEAAaIp~pll~~ll~----~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAPLLHQLVS----RFPRTLLTTTVQGYE 292 (671)
T ss_dssp CCCSEEEEETGGGSCHHHHHHHHT----TSSEEEEEEEBSSTT
T ss_pred ccCCEEEEEchhcCCHHHHHHHHh----hCCeEEEEecCCcCC
Confidence 358999999999998765554444 246898887777654
No 20
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=91.26 E-value=0.13 Score=48.73 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=47.0
Q ss_pred ceeeeccccCCCcchhhhhhhccccCCCeEE--EEcCCCCCCceEeccchhccchh---hhHHHHHhcCccccccccccc
Q psy3902 67 THCVIDEAGQATEPEVLVPISLLHRDNGHVV--LAGDPLQLGPTVFSKLGQQLELR---ISLLERLTGRFLYSRDMSRFY 141 (181)
Q Consensus 67 d~vIIDEAsq~~e~~~l~~l~~~~~~~~~~v--lvGD~~QL~P~v~~~~~~~~~~~---~slf~rl~~~~~~~~~~~~~~ 141 (181)
++|+|||+-..+..+.- -+......++++. ++||+.+.+... .+. .-|+.. ...+.++....
T Consensus 203 ~~IlVDEfQD~~~~Q~~-ll~~L~~~~~~~~v~lvGD~~~~~~~~-~~Q-sIY~~rga~~~~l~~~~~~~---------- 269 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFR-VLEQLMVHAEHITFSLTADKPSYEREP-HEL-ELFRMTGKTYYRLHQKAKEL---------- 269 (1166)
T ss_dssp CEEEECSCSCCCHHHHH-HHHHHHHHCSEEEEEEECSSCCSSSCC-CTT-CTTHHHHHHHHHHHHHHHHT----------
T ss_pred CEEEEeCCCCCCHHHHH-HHHHHHHhCCCEEEEEEeCcccccCCC-CCC-CcchhHHHHHHHHHHHHHHc----------
Confidence 79999999555444433 3332222345555 669976643100 000 011221 12233332210
Q ss_pred ccCCcCCccccchhhhhcChhHHHHhhhhhhc
Q psy3902 142 ATGGYDPRLVTRLVNNYRTMPEILKISSDLFY 173 (181)
Q Consensus 142 ~~~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY 173 (181)
++.....+.|..+||+.+.|.++++..+.
T Consensus 270 ---~~~~~~~~~L~~nyRs~~~il~~i~~~~~ 298 (1166)
T 3u4q_B 270 ---NLDITYKELSGTERHTKTPELAHLEAQYE 298 (1166)
T ss_dssp ---TCCEEEEEECSCSTTTTCHHHHHHHHSSS
T ss_pred ---CCCcccceecCCCCCCCCHHHHHHHHhHh
Confidence 01122346799999999999999887653
No 21
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.18 E-value=0.32 Score=42.87 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=32.5
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccce
Q psy3902 5 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTV 49 (181)
Q Consensus 5 ~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T 49 (181)
+++++|||||+....+. +..|........+++|+||+.|+...-
T Consensus 262 ~~d~lIIDEAsml~~~~-~~~Ll~~l~~~~~liLvGD~~QL~~V~ 305 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPM-MSRLIDALPDHARVIFLGDRDQLASVE 305 (608)
T ss_dssp SCSEEEECSGGGCBHHH-HHHHHHTCCTTCEEEEEECTTSGGGTS
T ss_pred CCCEEEEechhhCCHHH-HHHHHHhCCCCCEEEEEcchhhcCCCC
Confidence 68999999999887542 333333335678999999999997653
No 22
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.38 E-value=0.61 Score=35.91 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=23.6
Q ss_pred CCccceeeeccccCCCcchhhhhhhccccCCCeEEEEcC
Q psy3902 63 SGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGD 101 (181)
Q Consensus 63 ~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD 101 (181)
...+|+||||||--.+ .+.+--+....+....+|++|=
T Consensus 87 ~~~~dvViIDEaQ~l~-~~~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFD-DRICEVANILAENGFVVIISGL 124 (223)
T ss_dssp CTTCCEEEECSGGGSC-THHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCCEEEEecCccCc-HHHHHHHHHHHhCCCeEEEEec
Confidence 3569999999995443 3432222222224678999984
No 23
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=83.45 E-value=0.56 Score=36.02 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=22.8
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcC
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGD 101 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD 101 (181)
+.+|+|+||||--.++ +.+--+....+....+|+.|=
T Consensus 100 ~~~dvViIDEaQF~~~-~~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDG-DIVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SSCCEEEECCGGGSCT-THHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCEEEEECcccCCH-HHHHHHHHHhhCCCEEEEEec
Confidence 3599999999965533 333233321224678888874
No 24
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=83.05 E-value=0.75 Score=38.84 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=43.1
Q ss_pred CCCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccceecccc-cccccCCCCCccceeeeccccCC
Q psy3902 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFSKLG-QQLELSTPSGYFTHCVIDEAGQA 77 (181)
Q Consensus 4 ~~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T~~~~~-~~~~~~~~~~~fd~vIIDEAsq~ 77 (181)
..+++++|||++.... +.+..+..+.....+++++||..|++..-..... ..... +....+..+-+++--..
T Consensus 127 ~~~~~iiiDE~~~~~~-~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~l~~~-~~~~~~~~~~L~~~~R~ 199 (459)
T 3upu_A 127 AKCRVLICDEVSMYDR-KLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAYISPF-FTHKDFYQCELTEVKRS 199 (459)
T ss_dssp SSCSEEEESCGGGCCH-HHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCCCCGG-GTCTTEEEEECCCCCCC
T ss_pred cCCCEEEEECchhCCH-HHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHhHHHH-HhcCCCcEEeceeeeeC
Confidence 4689999999998653 3444455444567889999999997654432211 11111 12234556666665444
No 25
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=81.98 E-value=0.69 Score=34.63 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=23.2
Q ss_pred ccceeeeccccCCCcchhhhhhhccccCCCeEEEEcC
Q psy3902 65 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGD 101 (181)
Q Consensus 65 ~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD 101 (181)
.+|+|+||||--.+ ++.+--+....+....+|+.|=
T Consensus 81 ~~dvViIDEaqfl~-~~~v~~l~~l~~~~~~Vi~~Gl 116 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD-DEIVEIVNKIAESGRRVICAGL 116 (191)
T ss_dssp TCSEEEECSGGGSC-THHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCEEEEECCCCCC-HHHHHHHHHHHhCCCEEEEEec
Confidence 58999999986654 3444333332234578888883
No 26
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=80.58 E-value=0.74 Score=40.75 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=40.8
Q ss_pred cccccceecccccccccCCCCCccceeeeccccCCCcchh--hhhhhccccCCCeEEEEcCCCCCC
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEV--LVPISLLHRDNGHVVLAGDPLQLG 106 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~--l~~l~~~~~~~~~~vlvGD~~QL~ 106 (181)
..|+++|......... .+....|++||+|||-.+..+.. .-++.... ...++.|.|=|.|-.
T Consensus 171 ~~vvi~ty~~l~~~~~-~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~-~~~rl~LTgTPiqN~ 234 (644)
T 1z3i_X 171 TPILIISYETFRLHAE-VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMN-AQRRVLISGTPIQND 234 (644)
T ss_dssp CCEEEEEHHHHHHHTT-TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHC-CSEEEEECSSCSGGG
T ss_pred CcEEEeeHHHHHhhHH-HhhcCCccEEEEECceecCChhhHHHHHHHhcc-cCcEEEEecCcccCC
Confidence 5688888776654322 24567899999999998855432 22332221 347889999887754
No 27
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=80.47 E-value=0.56 Score=41.11 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccc
Q psy3902 5 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPT 48 (181)
Q Consensus 5 ~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~ 48 (181)
.++++||||++...... +..+.....+..+++++||+.|+...
T Consensus 279 ~~dvlIIDEasml~~~~-~~~Ll~~~~~~~~lilvGD~~QL~~v 321 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDAL-MLSLLAAVPPGARVLLVGDTDQLPPV 321 (574)
T ss_dssp SCSEEEECCGGGCCHHH-HHHHHTTSCTTCEEEEEECTTSCCCS
T ss_pred cCCEEEEcCccCCCHHH-HHHHHHhCcCCCEEEEEecccccCCc
Confidence 68999999999987653 33333333467899999999997654
No 28
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=77.92 E-value=0.67 Score=40.49 Aligned_cols=42 Identities=36% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCceEecCCCccccc
Q psy3902 5 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGP 47 (181)
Q Consensus 5 ~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~ 47 (181)
+|+|++|||+ |-..+..+.-+..+.....+++++||+.|-|.
T Consensus 213 ~~~~ilVDE~-QD~~~~q~~ll~~l~~~~~~l~~vGD~~QsIy 254 (647)
T 3lfu_A 213 RFTNILVDEF-QDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIY 254 (647)
T ss_dssp HCCEEEESSG-GGCCHHHHHHHHHHHTTTCEEEEEECGGGCCC
T ss_pred hCCEEEEECc-ccCCHHHHHHHHHHhcCCCEEEEEcCchhhhc
Confidence 5999999998 55556666777777777789999999888654
No 29
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=76.88 E-value=1.3 Score=32.67 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=22.2
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcC
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGD 101 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD 101 (181)
..+|+||||||-..+ ++.+-.+....+....+++.|=
T Consensus 75 ~~~dvviIDE~Q~~~-~~~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 75 EDTRGVFIDEVQFFN-PSLFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TTEEEEEECCGGGSC-TTHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECcccCC-HHHHHHHHHHHHCCCCEEEEee
Confidence 368999999996653 3333333312223567777775
No 30
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.35 E-value=2 Score=32.38 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=29.0
Q ss_pred CCCCccceeeeccc------cCCCcchhhhhhhccccCCCeEEEEcCC
Q psy3902 61 TPSGYFTHCVIDEA------GQATEPEVLVPISLLHRDNGHVVLAGDP 102 (181)
Q Consensus 61 ~~~~~fd~vIIDEA------sq~~e~~~l~~l~~~~~~~~~~vlvGD~ 102 (181)
+..+.+|+||+||. +.+.+.+.+-.+. .++....+|+.|-.
T Consensus 116 l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 116 LADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRG 162 (196)
T ss_dssp TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSS
T ss_pred HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCC
Confidence 45678999999999 4566666554444 33467889998854
No 31
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=76.25 E-value=1.1 Score=35.04 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=25.8
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcc
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEP 80 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~ 80 (181)
..+|+++|.......... ....|+++|||||-.+...
T Consensus 204 ~~~I~v~T~~~l~~~~~~--~~~~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 204 DAPVVVGTWQTVVKQPKE--WFSQFGMMMNDECHLATGK 240 (282)
T ss_dssp TCSEEEECHHHHTTSCGG--GGGGEEEEEEETGGGCCHH
T ss_pred CCcEEEEchHHHHhhHHH--HHhhCCEEEEECCccCCcc
Confidence 467888888665443221 2357899999999888765
No 32
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=76.13 E-value=0.93 Score=38.61 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=31.6
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccceec
Q psy3902 5 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPTVFS 51 (181)
Q Consensus 5 ~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~T~~ 51 (181)
.++.++|||++..... .+..+..+. ...++++.||+.|+......
T Consensus 234 ~~d~liiDE~sm~~~~-~l~~l~~~~-~~~~vilvGD~~Qlp~v~~~ 278 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTG-CVNFLVEMS-LCDIAYVYGDTQQIPYINRV 278 (446)
T ss_dssp CCSEEEEETGGGSCHH-HHHHHHHHT-TCSEEEEEECTTSCCCCCCS
T ss_pred cCCEEEEeCcccCCHH-HHHHHHHhC-CCCEEEEecCcccccCcccC
Confidence 4899999999977543 333333333 33899999999998766443
No 33
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.40 E-value=0.56 Score=34.50 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=21.0
Q ss_pred cccccceecccccccccC-------CCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLELS-------TPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~-------~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........... +....++++|||||-.+..
T Consensus 133 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 133 CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred CCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 568888877654322111 2335789999999987754
No 34
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=74.91 E-value=1.7 Score=33.48 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=21.4
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEc
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAG 100 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvG 100 (181)
..+|+|+||||--.+ .+.+--+.........|+.+|
T Consensus 100 ~~~dvV~IDEaQFf~-~~~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFD-DEIVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSC-THHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEechhcCC-HHHHHHHHHHHHCCCEEEEee
Confidence 579999999995444 333322221112457888877
No 35
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=74.33 E-value=1.5 Score=33.07 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=20.9
Q ss_pred ccceeeeccccCCCcchhhhhhhccccCCCeEEEEc
Q psy3902 65 YFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAG 100 (181)
Q Consensus 65 ~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvG 100 (181)
.+|+|+||||--. .+..--+....+..+++|++|
T Consensus 91 ~~DvIlIDEaQFf--k~~ve~~~~L~~~gk~VI~~G 124 (195)
T 1w4r_A 91 GVAVIGIDEGQFF--PDIVEFCEAMANAGKTVIVAA 124 (195)
T ss_dssp TCSEEEESSGGGC--TTHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEchhhh--HHHHHHHHHHHHCCCeEEEEe
Confidence 4799999999544 332222222123568898887
No 36
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=74.18 E-value=2.3 Score=36.82 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=30.9
Q ss_pred Ccccccceeccccccc-----ccCCCCCccceeeeccccCCCcc--hhhhhhhccccCCCeEEEEcCCC
Q psy3902 42 PLQLGPTVFSKLGQQL-----ELSTPSGYFTHCVIDEAGQATEP--EVLVPISLLHRDNGHVVLAGDPL 103 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~-----~~~~~~~~fd~vIIDEAsq~~e~--~~l~~l~~~~~~~~~~vlvGD~~ 103 (181)
..+|+++|........ ...+....|++||||||-.+... ..+-.+....+....+.|.|=|.
T Consensus 274 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~ 342 (590)
T 3h1t_A 274 SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPL 342 (590)
T ss_dssp SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCS
T ss_pred CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccc
Confidence 4688999887765421 11245567999999999887643 22222221111234555555544
No 37
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=72.60 E-value=1.4 Score=39.04 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=33.1
Q ss_pred CCCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccc
Q psy3902 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPT 48 (181)
Q Consensus 4 ~~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~ 48 (181)
.+|+|++|||.-. ..+..+.-+..+.....+++++||+.|-|..
T Consensus 206 ~~~~~ilVDEfQD-t~~~Q~~ll~~L~~~~~~l~~vGD~~QsIy~ 249 (673)
T 1uaa_A 206 NKIRYLLVDEYQD-TNTSQYELVKLLVGSRARFTVVGDDDQSIYS 249 (673)
T ss_dssp TTCSEEEESCGGG-CBHHHHHHHHHHHTTTCCEEEECCGGGCCCG
T ss_pred hhCcEEEEecccc-CCHHHHHHHHHHhcCCCeEEEEeCchhhhhh
Confidence 5799999999954 4555566666666666789999999876643
No 38
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=71.73 E-value=1.8 Score=33.06 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=23.9
Q ss_pred cccccceecccccccccCCCCCccceeeeccccCCCcch
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPE 81 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~ 81 (181)
.+|+++|.......... -...++++|||||-.+....
T Consensus 172 ~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 172 KPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLPAES 208 (237)
T ss_dssp CSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCCCTTT
T ss_pred CCEEEEeHHHHHhhHHH--hcccCCEEEEECCccCCChH
Confidence 56777776554432221 12459999999999886543
No 39
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=70.81 E-value=1.1 Score=37.92 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=38.6
Q ss_pred cccccceecccccccccCCCCCccceeeeccccCCCcchh--hhhhhccccCCCeEEEEcCCCCC
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEV--LVPISLLHRDNGHVVLAGDPLQL 105 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~--l~~l~~~~~~~~~~vlvGD~~QL 105 (181)
.+|+++|......... +....|++||+|||-.+..+.. .-.+.... ...++.|.|=|.|-
T Consensus 129 ~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~-~~~~l~LTaTP~~n 190 (500)
T 1z63_A 129 YDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELK-SKYRIALTGTPIEN 190 (500)
T ss_dssp SSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSC-EEEEEEECSSCSTT
T ss_pred CcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHHHHHHhhc-cCcEEEEecCCCCC
Confidence 5688888877665432 2345799999999998865532 12222221 24678888888764
No 40
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=70.52 E-value=0.86 Score=41.36 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred cccccceecccccccccCCCCCccceeeeccccCCCcch--hhhhhhccccCCCeEEEEcCCCCCCc
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPE--VLVPISLLHRDNGHVVLAGDPLQLGP 107 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~--~l~~l~~~~~~~~~~vlvGD~~QL~P 107 (181)
..|+++|......... .+....|++||||||-.+..+. ..-.+.... ...++.|.|=|.|-.+
T Consensus 346 ~dvvitTy~~l~~~~~-~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~-~~~rl~LTgTPiqN~l 410 (800)
T 3mwy_W 346 FNVLLTTYEYILKDRA-ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFK-VANRMLITGTPLQNNI 410 (800)
T ss_dssp CSEEEECTTHHHHTHH-HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSE-EEEEEEECSCCCSSCS
T ss_pred CCEEEecHHHHHhhHH-HHhcCCcceeehhhhhhhcCchhHHHHHHHHhh-hccEEEeeCCcCCCCH
Confidence 4588888777654322 1344579999999999884333 222333221 3468889998876543
No 41
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=69.09 E-value=1 Score=33.88 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.0
Q ss_pred cccccceecccccccc--cCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLE--LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~--~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|......... ..+....++++|||||-.+..
T Consensus 147 ~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 147 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD 185 (236)
T ss_dssp CSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH
T ss_pred CCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc
Confidence 5788888765543211 123446789999999986543
No 42
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.93 E-value=1.4 Score=33.34 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=23.8
Q ss_pred Ccccccceeccccccccc---CCCCCccceeeeccccCCCc
Q psy3902 42 PLQLGPTVFSKLGQQLEL---STPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~---~~~~~~fd~vIIDEAsq~~e 79 (181)
+.+|+++|.......... .+....++++|||||-.+.+
T Consensus 149 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 149 KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred CCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 467888886654322111 13345789999999976543
No 43
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.23 E-value=1.3 Score=32.39 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=22.9
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|........ ...+....++++|||||-.+.
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 578888876543221 112334579999999997653
No 44
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=64.52 E-value=1.6 Score=31.91 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=23.7
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|......... .......++++|||||-.+..
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred CCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 5688888765433211 112345789999999976654
No 45
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.42 E-value=2 Score=32.09 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=22.9
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|........ ...+....++++|||||-.+.
T Consensus 144 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 180 (228)
T 3iuy_A 144 VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180 (228)
T ss_dssp CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHh
Confidence 478888866544321 112234578999999997554
No 46
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=62.16 E-value=1.9 Score=33.03 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=24.1
Q ss_pred Ccccccceecccccccc--cCCCCCccceeeeccccCCCc
Q psy3902 42 PLQLGPTVFSKLGQQLE--LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~--~~~~~~~fd~vIIDEAsq~~e 79 (181)
..+|+++|......... ..+....++++|||||-.+..
T Consensus 161 ~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 35788888765533211 123445789999999976543
No 47
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=61.49 E-value=2.2 Score=38.26 Aligned_cols=44 Identities=18% Similarity=0.050 Sum_probs=32.1
Q ss_pred CCCcEEEEecCCCCCCccccccccccccCCCceEecCCCcccccc
Q psy3902 4 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGPT 48 (181)
Q Consensus 4 ~~~~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~~ 48 (181)
.+|+|++|||.-.. -+..+.-+..+.....++.++||+.|-|-.
T Consensus 215 ~rf~~IlVDEfQDt-n~~Q~~ll~~L~~~~~~l~vVGD~~QsIY~ 258 (724)
T 1pjr_A 215 YKFQYIHIDEYQDT-NRAQYTLVKKLAERFQNICAVGDADQSIYR 258 (724)
T ss_dssp HHCSEEEESSGGGC-CHHHHHHHHHHHTTTCCEEEEECGGGCCCG
T ss_pred hhCCEEEEEhHhcC-CHHHHHHHHHHHcCCCeEEEEECchhhccc
Confidence 46999999999544 455556666666556789999998876643
No 48
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=61.47 E-value=1.9 Score=32.01 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=23.9
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ ...+....++++|||||-.+..
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 169 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh
Confidence 678888876643221 1123345789999999976543
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=61.41 E-value=4.4 Score=34.11 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=26.4
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcch
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPE 81 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~ 81 (181)
..+|+++|.......... ....|++||||||-.+....
T Consensus 204 ~~~I~i~T~~~l~~~~~~--~~~~~~liIiDE~H~~~~~~ 241 (510)
T 2oca_A 204 DAPVVVGTWQTVVKQPKE--WFSQFGMMMNDECHLATGKS 241 (510)
T ss_dssp TCSEEEEEHHHHTTSCGG--GGGGEEEEEEETGGGCCHHH
T ss_pred CCcEEEEeHHHHhhchhh--hhhcCCEEEEECCcCCCccc
Confidence 468888888765543211 23469999999998887644
No 50
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.18 E-value=1.7 Score=32.25 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=23.3
Q ss_pred Ccccccceecccccccc-cCCCCCccceeeeccccCCC
Q psy3902 42 PLQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~ 78 (181)
+.+|+++|......... ..+....++++|||||-.+.
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred CCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 35788888765433211 11234578999999997654
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=59.98 E-value=3.5 Score=33.58 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=25.6
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|......... ..+....|++||||||-.+..
T Consensus 102 ~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 102 AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 4688888776553221 123456799999999998864
No 52
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=59.86 E-value=2.2 Score=31.58 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=23.9
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ ...+....++++|||||-.+.+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 478888876543221 1123345789999999987644
No 53
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=59.27 E-value=2.2 Score=32.19 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=22.7
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|........ ...+....++++|||||-.+.
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 186 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 186 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhh
Confidence 678888865433221 111234568999999997653
No 54
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=57.97 E-value=7 Score=30.27 Aligned_cols=37 Identities=14% Similarity=-0.058 Sum_probs=23.1
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCC
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDP 102 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~ 102 (181)
..+|+|+||||--.....-++-+. ......+|+.|=.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l--~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAM--ANAGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHH--HHTTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhhHHHHHHHH--HhCCCEEEEEecc
Confidence 458999999997765422222222 2246789988743
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=57.33 E-value=2.5 Score=32.16 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=23.5
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|......... ..+....++++|||||-.+.
T Consensus 151 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 187 (253)
T 1wrb_A 151 CHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187 (253)
T ss_dssp CSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHH
Confidence 5788888776543211 11234568999999997654
No 56
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.96 E-value=2.3 Score=31.95 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=23.8
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|......... ..+....++++|||||-.+.+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 180 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLE 180 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHS
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhc
Confidence 5788888766543211 122345789999999976643
No 57
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=56.38 E-value=4.9 Score=33.44 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=26.1
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcchh
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEV 82 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~ 82 (181)
..+|+++|.......... + ...|++||||||-.+..+..
T Consensus 171 ~~~Ivv~T~~~l~~~~~~-~-~~~~~liIvDEaH~~~~~~~ 209 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAEK-L-GNRFMLLIFDEVHHLPAESY 209 (472)
T ss_dssp CCSEEEEEHHHHHHTHHH-H-TTTCSEEEEETGGGTTSTTT
T ss_pred cCCEEEEEcHHHHHHHHH-h-cCCCCEEEEECCcCCCChHH
Confidence 357888887765543221 1 24599999999988766543
No 58
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=54.05 E-value=3 Score=31.49 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=23.3
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ ........++++|||||-.+..
T Consensus 153 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 153 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp CSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh
Confidence 478888876543221 1122345789999999976543
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=52.74 E-value=3.3 Score=31.29 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=21.6
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCC
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQA 77 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~ 77 (181)
+.+|+++|.......... ....++++|||||-..
T Consensus 155 ~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 155 HASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHER 188 (235)
T ss_dssp SSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSC
T ss_pred CCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccC
Confidence 467888886433222111 2357899999999763
No 60
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.53 E-value=2.4 Score=34.67 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=21.9
Q ss_pred cccccceecccccccccCCCCCccceeeecccc
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAG 75 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAs 75 (181)
.+|+++|.......... +....++++|||||-
T Consensus 118 ~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREK-LSQKRFDFVFVDDVD 149 (414)
T ss_dssp CSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHH
T ss_pred CCEEEECHHHHHHHHHH-hccccccEEEEeChH
Confidence 67888887765432211 344579999999994
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=51.79 E-value=3.1 Score=32.08 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=22.1
Q ss_pred cccccceeccccccc--ccCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL--ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~--~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ ...+....++++|||||-.+..
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHH
T ss_pred CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhh
Confidence 468888854432211 1112345689999999976433
No 62
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=51.27 E-value=3.6 Score=33.20 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=25.0
Q ss_pred Ccccccceecccccccc-cCCCCCccceeeeccccCCCcch
Q psy3902 42 PLQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATEPE 81 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e~~ 81 (181)
..+|+++|......... .......++++|||||-.+....
T Consensus 139 ~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred CCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 35788888665432211 11234578999999998765543
No 63
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=51.21 E-value=3.4 Score=33.00 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=24.0
Q ss_pred Ccccccceeccccccc-ccCCCCCccceeeeccccCCCc
Q psy3902 42 PLQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~e 79 (181)
+.+|+++|........ ...+....++++|||||-.+..
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 3678888876544321 1112345799999999976543
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=50.50 E-value=3.1 Score=32.87 Aligned_cols=37 Identities=14% Similarity=-0.076 Sum_probs=23.2
Q ss_pred cccccceeccccccc-c-cCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL-E-LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~-~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ . ..+....++++|||||-.+..
T Consensus 211 ~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp CSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHH
T ss_pred CCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhh
Confidence 468888876643221 1 123345789999999976543
No 65
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=50.23 E-value=3 Score=31.34 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=34.2
Q ss_pred cEEEEecCCCCCCccccccccccccCCCceEecCCCccccc
Q psy3902 7 THCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPLQLGP 47 (181)
Q Consensus 7 ~~~~~de~~q~~e~~~~~~l~~~~~~~~~~~l~~d~~~vv~ 47 (181)
+++|||||++.+--|.+.-+....+.+.+++|.++..|--.
T Consensus 123 s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 123 STVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp CEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCS
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccC
Confidence 47899999999999998888888888889999987655443
No 66
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=50.20 E-value=3.6 Score=32.43 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=24.2
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCCcc
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATEP 80 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e~ 80 (181)
.+|+++|......... ..+....++++|||||-.+...
T Consensus 124 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp CSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred CCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 5688888765543221 1123457899999999876443
No 67
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.92 E-value=3.8 Score=32.79 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=23.1
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|........ ...+....++++|||||-.+.
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 468888866543221 112344579999999997653
No 68
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=49.83 E-value=3.5 Score=32.18 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=23.3
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ ...+....++++|||||-.+.+
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 106 ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 568888866544321 1112345789999999976543
No 69
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.73 E-value=4 Score=34.72 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=24.9
Q ss_pred Ccccccceecccccc-cccCCCCCccceeeeccccCCCc
Q psy3902 42 PLQLGPTVFSKLGQQ-LELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~-~~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.++|+++|....... ....+....++++|||||-.+..
T Consensus 235 ~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 467888887664432 11223446799999999976644
No 70
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=49.66 E-value=7.1 Score=34.90 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=25.1
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccCCCcchh
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQATEPEV 82 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~~e~~~ 82 (181)
..+|+++|....- ....+....++++||||| ++.....
T Consensus 297 ~~~IlV~TPGrLl--~~~~l~l~~l~~lVlDEA-H~l~~~~ 334 (666)
T 3o8b_A 297 GAPVTYSTYGKFL--ADGGCSGGAYDIIICDEC-HSTDSTT 334 (666)
T ss_dssp CCSEEEEEHHHHH--HTTSCCTTSCSEEEETTT-TCCSHHH
T ss_pred CCCEEEECcHHHH--hCCCcccCcccEEEEccc-hhcCccH
Confidence 4678888765532 222344557999999999 7766555
No 71
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=48.94 E-value=3.6 Score=33.15 Aligned_cols=36 Identities=14% Similarity=-0.079 Sum_probs=23.1
Q ss_pred cccccceeccccccc-c-cCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQL-E-LSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~-~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|........ . ..+....++++|||||-.+.
T Consensus 144 ~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 144 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp CSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred CCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence 478888876653321 1 12234579999999997553
No 72
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=48.70 E-value=4.2 Score=32.83 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=23.4
Q ss_pred Ccccccceeccccccc-ccCCCCCccceeeeccccCCC
Q psy3902 42 PLQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~ 78 (181)
..+|+++|........ ...+....++++|||||-.+.
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~ 196 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 196 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhh
Confidence 3578888865543221 112344568999999998653
No 73
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=47.98 E-value=4.5 Score=32.37 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=24.6
Q ss_pred cccccceeccccccc-ccCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQL-ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~~~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|........ ...+....++++|||||-.+..
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 478888876654321 1123346799999999987755
No 74
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=47.74 E-value=4.4 Score=32.79 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=23.3
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|......... ..+....++++|||||-.+.
T Consensus 152 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 152 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp CSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred CCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 5788888766543211 11234578999999997653
No 75
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.17 E-value=19 Score=26.77 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=23.3
Q ss_pred CccceeeeccccCCCcc--------hhhhhhhccccCCCeEEEEcCC
Q psy3902 64 GYFTHCVIDEAGQATEP--------EVLVPISLLHRDNGHVVLAGDP 102 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~--------~~l~~l~~~~~~~~~~vlvGD~ 102 (181)
+.-.++|||||-....+ ..+.-+...+...-.+|++|-+
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 44678999999776221 2222233222234578999877
No 76
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=45.74 E-value=5 Score=35.20 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=25.0
Q ss_pred Ccccccceeccccccc-------ccCCCCCccceeeeccccCCCc
Q psy3902 42 PLQLGPTVFSKLGQQL-------ELSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~-------~~~~~~~~fd~vIIDEAsq~~e 79 (181)
..+|+++|........ ...+....+++||||||-.+..
T Consensus 106 ~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 106 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 3678888877665321 1123446799999999987643
No 77
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=42.24 E-value=5.8 Score=32.07 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=23.5
Q ss_pred cccccceecccccc-cccCCCCCccceeeeccccCCCcc
Q psy3902 43 LQLGPTVFSKLGQQ-LELSTPSGYFTHCVIDEAGQATEP 80 (181)
Q Consensus 43 ~~vv~~T~~~~~~~-~~~~~~~~~fd~vIIDEAsq~~e~ 80 (181)
.+|+++|....... ....+....++++|||||-.+...
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST
T ss_pred CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhh
Confidence 46788776543322 111234467999999999866443
No 78
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=41.44 E-value=6.3 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=25.8
Q ss_pred cccccceeccccccccc-CC-CCCccceeeeccccCCCcch
Q psy3902 43 LQLGPTVFSKLGQQLEL-ST-PSGYFTHCVIDEAGQATEPE 81 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~-~~-~~~~fd~vIIDEAsq~~e~~ 81 (181)
.+|+++|.......... .+ ....++++|||||-.+....
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 146 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 146 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc
Confidence 46888887765532221 12 34578999999998876543
No 79
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=41.26 E-value=5.4 Score=33.29 Aligned_cols=36 Identities=14% Similarity=-0.079 Sum_probs=23.1
Q ss_pred cccccceeccccccc-c-cCCCCCccceeeeccccCCC
Q psy3902 43 LQLGPTVFSKLGQQL-E-LSTPSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~-~-~~~~~~~fd~vIIDEAsq~~ 78 (181)
.+|+++|........ . ..+....++++|||||-.+.
T Consensus 211 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp CSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHH
T ss_pred CCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHh
Confidence 468888876653321 1 12334579999999997553
No 80
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=39.07 E-value=6.1 Score=34.62 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=25.7
Q ss_pred cccccceecccccccccC-C-CCCccceeeeccccCCCcch
Q psy3902 43 LQLGPTVFSKLGQQLELS-T-PSGYFTHCVIDEAGQATEPE 81 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~-~-~~~~fd~vIIDEAsq~~e~~ 81 (181)
.+|+++|..........+ + ....++++|||||-.+....
T Consensus 112 ~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 112 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC
T ss_pred CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc
Confidence 578888877654432211 2 34578999999998875443
No 81
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=39.06 E-value=7 Score=32.76 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=25.7
Q ss_pred cccccceecccccccccC-C-CCCccceeeeccccCCCcch
Q psy3902 43 LQLGPTVFSKLGQQLELS-T-PSGYFTHCVIDEAGQATEPE 81 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~-~-~~~~fd~vIIDEAsq~~e~~ 81 (181)
.+|+++|..........+ + ....++++|||||-.+....
T Consensus 103 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 103 NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 578888877654432211 1 34568999999998886653
No 82
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=36.99 E-value=13 Score=34.54 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=37.4
Q ss_pred cccccceecccccccc--cCCCCCccceeeeccccCCCcchh--------hhhhhccccCCCeEEEEcCCCCCCc
Q psy3902 43 LQLGPTVFSKLGQQLE--LSTPSGYFTHCVIDEAGQATEPEV--------LVPISLLHRDNGHVVLAGDPLQLGP 107 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~--~~~~~~~fd~vIIDEAsq~~e~~~--------l~~l~~~~~~~~~~vlvGD~~QL~P 107 (181)
.+|+++|......... ..+....|++||||||-.+..... +..+.. +...++.|.|=|.|..+
T Consensus 249 ~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~~~L~LTATPi~n~~ 321 (968)
T 3dmq_A 249 EQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVPGVLLLTATPEQLGM 321 (968)
T ss_dssp CSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCSSEEESCSSCSSSCS
T ss_pred CCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCCcEEEEEcCCccCCH
Confidence 5788888776543211 112345799999999998864332 222221 12357888888877443
No 83
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=36.42 E-value=9.1 Score=31.66 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=24.1
Q ss_pred cccccceecccccccc-cCCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLE-LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~-~~~~~~~fd~vIIDEAsq~~e 79 (181)
++|+++|......... ..+....++++|+|||-.+..
T Consensus 180 ~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 180 CHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp CSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTS
T ss_pred CCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhc
Confidence 5788888765533211 123346789999999987654
No 84
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=30.49 E-value=15 Score=31.52 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=24.3
Q ss_pred Ccccccceeccccccc--c-cCCCCCccceeeeccccCCCc
Q psy3902 42 PLQLGPTVFSKLGQQL--E-LSTPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~--~-~~~~~~~fd~vIIDEAsq~~e 79 (181)
.++||++|.+...... . ..+ ....+++|||||-++.+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~-~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDI-DLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCC-CSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCC-CcCCeEEEEecccchHH
Confidence 4688988887654321 1 111 13577899999998865
No 85
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=30.37 E-value=11 Score=33.25 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=23.0
Q ss_pred CcccccceecccccccccCCC-CCccceeeeccccCCC
Q psy3902 42 PLQLGPTVFSKLGQQLELSTP-SGYFTHCVIDEAGQAT 78 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~-~~~fd~vIIDEAsq~~ 78 (181)
+.+|+++|.-........... ...+++||||||-.+.
T Consensus 114 ~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 114 DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGG
T ss_pred CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecC
Confidence 478999987544332111111 2468999999998653
No 86
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=30.05 E-value=11 Score=33.96 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=24.9
Q ss_pred cccccceeccccccccc-CC-CCCccceeeeccccCCCcc
Q psy3902 43 LQLGPTVFSKLGQQLEL-ST-PSGYFTHCVIDEAGQATEP 80 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~-~~-~~~~fd~vIIDEAsq~~e~ 80 (181)
.+|+++|.......... .+ ....+++||||||-.+...
T Consensus 347 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 347 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 57888887765432211 12 3346899999999877654
No 87
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=29.93 E-value=9 Score=33.97 Aligned_cols=37 Identities=14% Similarity=-0.053 Sum_probs=23.1
Q ss_pred CcccccceecccccccccCC-CCCccceeeeccccCCC
Q psy3902 42 PLQLGPTVFSKLGQQLELST-PSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~-~~~~fd~vIIDEAsq~~ 78 (181)
+.+|+++|............ ....+++||||||-.+.
T Consensus 114 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 114 KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 46788888755432211111 12468999999998654
No 88
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=28.50 E-value=9 Score=33.88 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=22.8
Q ss_pred CcccccceecccccccccCC-CCCccceeeeccccCCC
Q psy3902 42 PLQLGPTVFSKLGQQLELST-PSGYFTHCVIDEAGQAT 78 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~-~~~~fd~vIIDEAsq~~ 78 (181)
+.+|+++|.-.......... ....+++||||||-.+.
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 46788888754432211111 12468999999998754
No 89
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=28.47 E-value=25 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=15.8
Q ss_pred CCccceeeeccccCC--Ccchhhhhh
Q psy3902 63 SGYFTHCVIDEAGQA--TEPEVLVPI 86 (181)
Q Consensus 63 ~~~fd~vIIDEAsq~--~e~~~l~~l 86 (181)
...+|++|+|||+-+ .....+-.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHH
Confidence 356999999998665 334444443
No 90
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=23.76 E-value=18 Score=34.01 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=33.6
Q ss_pred CcccccceecccccccccC--C-CCCccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCCC
Q psy3902 42 PLQLGPTVFSKLGQQLELS--T-PSGYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDPL 103 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~--~-~~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~~ 103 (181)
..+|+++|........... + ....+++||||||-.+.....+-.+....+.+..+-+.|=|.
T Consensus 375 ~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 375 DNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp SCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCC
T ss_pred CCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCcc
Confidence 4678999887765421100 0 123689999999988754333323322222334555555443
No 91
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=23.15 E-value=98 Score=23.79 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=22.8
Q ss_pred CccceeeeccccCCCcchhhhhhhccccCCCeEEEEcCC
Q psy3902 64 GYFTHCVIDEAGQATEPEVLVPISLLHRDNGHVVLAGDP 102 (181)
Q Consensus 64 ~~fd~vIIDEAsq~~e~~~l~~l~~~~~~~~~~vlvGD~ 102 (181)
..||+||||=.+.........++. .+..++++-++
T Consensus 155 ~~yD~ViiD~p~~~~~~~~~~~l~----~aD~viiv~~~ 189 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGGFAAPLQ----HADQAVVVTAN 189 (307)
T ss_dssp SSCSEEEEEECCSSCCGGGGGGGG----TCSEEEEEECS
T ss_pred ccCCEEEEeCCCccchHHHHHHHH----HCCEEEEEecC
Confidence 579999999876655444444444 34777776543
No 92
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=23.08 E-value=8.7 Score=32.70 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=22.4
Q ss_pred cccccceeccccccccc--CCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLEL--STPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~--~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|.......... ......++++|||||-.+..
T Consensus 202 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 240 (563)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred CCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhc
Confidence 57888887655321110 01124589999999987643
No 93
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=23.01 E-value=8.8 Score=33.05 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=22.3
Q ss_pred cccccceeccccccccc--CCCCCccceeeeccccCCCc
Q psy3902 43 LQLGPTVFSKLGQQLEL--STPSGYFTHCVIDEAGQATE 79 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~--~~~~~~fd~vIIDEAsq~~e 79 (181)
.+|+++|.......... ......++++|||||-.+..
T Consensus 151 ~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 151 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 189 (579)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred CCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc
Confidence 56888886654321110 01224689999999987653
No 94
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=22.79 E-value=13 Score=31.88 Aligned_cols=36 Identities=19% Similarity=-0.035 Sum_probs=23.0
Q ss_pred Ccccccceeccccccc---ccC---C--CCCccceeeeccccCC
Q psy3902 42 PLQLGPTVFSKLGQQL---ELS---T--PSGYFTHCVIDEAGQA 77 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~---~~~---~--~~~~fd~vIIDEAsq~ 77 (181)
.++||++|.+...... ..+ . .....+++|||||-++
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 3688888887654311 111 0 1235789999999988
No 95
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.54 E-value=17 Score=33.49 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=24.7
Q ss_pred cccccceeccccccccc-CC-CCCccceeeeccccCCCcc
Q psy3902 43 LQLGPTVFSKLGQQLEL-ST-PSGYFTHCVIDEAGQATEP 80 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~-~~-~~~~fd~vIIDEAsq~~e~ 80 (181)
.+|+++|.......... .+ ....++++|||||-.+...
T Consensus 347 ~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 347 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 46888887765432221 11 2346899999999877654
No 96
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=22.34 E-value=12 Score=35.31 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=21.3
Q ss_pred cccccceecccccccccCCCCCccceeeecccc
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAG 75 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAs 75 (181)
.+|+++|.......... +....++++|||||-
T Consensus 175 ~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 175 YHILVFSTQFVSKNREK-LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp CSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHH
T ss_pred CCEEEECHHHHHHHHHh-hcccCcCEEEEeCCC
Confidence 67888887665332111 234579999999993
No 97
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=21.50 E-value=23 Score=32.05 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=22.1
Q ss_pred CcccccceecccccccccCCCCCccceeeeccccC
Q psy3902 42 PLQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQ 76 (181)
Q Consensus 42 ~~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq 76 (181)
..+|+++|................++++|||||-.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 46777777654433222122345799999999974
No 98
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=20.23 E-value=33 Score=31.11 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=20.6
Q ss_pred cccccceecccccccccCCCCCccceeeeccccCC
Q psy3902 43 LQLGPTVFSKLGQQLELSTPSGYFTHCVIDEAGQA 77 (181)
Q Consensus 43 ~~vv~~T~~~~~~~~~~~~~~~~fd~vIIDEAsq~ 77 (181)
.+|+++|...... .+....+++||||||-..
T Consensus 472 ~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 472 IDVVIGTHALIQE----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp CCEEEECTTHHHH----CCCCSCCCEEEEESCCCC
T ss_pred CCEEEECHHHHhh----hhhccCCceEEecccchh
Confidence 6788887643321 133457899999999764
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.21 E-value=68 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCccceeeeccccCCC---cchhhhhhh---ccccCCCeEEEEcCCC
Q psy3902 63 SGYFTHCVIDEAGQAT---EPEVLVPIS---LLHRDNGHVVLAGDPL 103 (181)
Q Consensus 63 ~~~fd~vIIDEAsq~~---e~~~l~~l~---~~~~~~~~~vlvGD~~ 103 (181)
...+|++|||+|+... .+..+.-+. ... ....+++|.|..
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVlDa~ 222 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVIDAS 222 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEEEGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEEeCc
Confidence 3479999999999754 222222111 111 236778887764
Done!