Query psy3903
Match_columns 112
No_of_seqs 148 out of 1039
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:22:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00194 Carb_anhydrase: Eukar 100.0 6.4E-35 1.4E-39 221.7 7.4 95 4-98 162-256 (256)
2 cd03149 alpha_CA_VII Carbonic 100.0 4.8E-34 1E-38 215.6 8.5 94 5-98 143-236 (236)
3 cd03118 alpha_CA_V Carbonic an 100.0 6.3E-34 1.4E-38 214.9 8.8 95 4-98 142-236 (236)
4 KOG0382|consensus 100.0 5.9E-34 1.3E-38 218.3 7.9 94 3-99 168-262 (262)
5 cd03126 alpha_CA_XII_XIV Carbo 100.0 1E-33 2.3E-38 215.2 8.7 95 4-98 154-249 (249)
6 cd03119 alpha_CA_I_II_III_XIII 100.0 1.7E-33 3.7E-38 214.9 8.5 95 4-98 165-259 (259)
7 cd03121 alpha_CARP_X_XI_like C 100.0 3.1E-33 6.7E-38 213.3 9.0 95 4-98 161-255 (256)
8 cd03125 alpha_CA_VI Carbonic a 100.0 1.2E-32 2.5E-37 209.5 8.6 92 4-98 156-248 (249)
9 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 1.6E-32 3.5E-37 208.6 8.9 91 5-98 157-248 (248)
10 cd03120 alpha_CARP_VIII Carbon 100.0 1.9E-32 4.1E-37 209.0 9.0 95 4-98 155-256 (256)
11 cd03150 alpha_CA_IX Carbonic a 100.0 2.5E-32 5.5E-37 207.4 9.1 91 5-98 155-246 (247)
12 cd03117 alpha_CA_IV_XV_like Ca 100.0 1.3E-31 2.9E-36 202.0 8.5 91 5-96 142-234 (234)
13 cd03122 alpha_CARP_receptor_li 100.0 3.9E-31 8.5E-36 201.4 8.7 92 4-95 158-252 (253)
14 PLN02202 carbonate dehydratase 100.0 1.6E-30 3.5E-35 201.2 7.5 80 14-100 189-268 (284)
15 cd00326 alpha_CA Carbonic anhy 100.0 2.3E-30 4.9E-35 194.2 7.9 88 4-95 139-227 (227)
16 cd03124 alpha_CA_prokaryotic_l 100.0 1.3E-29 2.8E-34 189.0 7.4 77 9-95 138-215 (216)
17 COG3338 Cah Carbonic anhydrase 100.0 3.9E-29 8.4E-34 187.3 7.1 78 9-97 171-249 (250)
18 PLN02179 carbonic anhydrase 99.7 1.8E-17 3.8E-22 125.6 3.6 47 10-56 184-230 (235)
19 smart00190 IL4_13 Interleukins 45.1 5.8 0.00012 28.1 -0.5 31 38-68 46-81 (138)
20 PHA02614 Major capsid protein 35.2 22 0.00049 28.8 1.4 48 17-64 200-266 (363)
21 PF00718 Polyoma_coat: Polyoma 31.9 34 0.00073 27.1 1.9 25 17-41 182-212 (297)
22 PF04688 Phage_holin: Phage ly 31.0 38 0.00083 19.4 1.6 17 51-67 2-18 (47)
23 PF03174 CHB_HEX_C: Chitobiase 26.1 32 0.00069 20.9 0.7 39 17-61 18-56 (75)
24 PRK15276 putative fimbrial sub 26.0 40 0.00087 24.0 1.3 16 27-42 14-30 (153)
25 PHA02771 hypothetical protein; 21.2 57 0.0012 21.5 1.2 18 48-65 24-41 (90)
No 1
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=6.4e-35 Score=221.73 Aligned_cols=95 Identities=37% Similarity=0.685 Sum_probs=79.7
Q ss_pred CCCCCCceeEecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNV 83 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~ 83 (112)
.|..+++.+.+..|+|.+|||...+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....++....+.+|+
T Consensus 162 ~i~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~~~~~~~N~ 241 (256)
T PF00194_consen 162 NIPYPGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEEFAPLVNNF 241 (256)
T ss_dssp GGTSTTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSSECBSSS-S
T ss_pred hccccccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCccccCCCCc
Confidence 46778899999999999999999999999999999999999999999999999999999999998766555556789999
Q ss_pred CCCCCCCCCEEEEee
Q psy3903 84 RPLQFIHSRTVRTNI 98 (112)
Q Consensus 84 Rp~Qpln~R~V~~~~ 98 (112)
||+||||||.|++||
T Consensus 242 Rp~QpLn~R~V~~sf 256 (256)
T PF00194_consen 242 RPVQPLNGRKVYASF 256 (256)
T ss_dssp ---B--TTS-EEESS
T ss_pred CCCCCCCCcEEEeCC
Confidence 999999999999997
No 2
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=4.8e-34 Score=215.58 Aligned_cols=94 Identities=31% Similarity=0.523 Sum_probs=82.8
Q ss_pred CCCCCceeEecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy3903 5 CPVSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNVR 84 (112)
Q Consensus 5 i~~~g~~~~i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~R 84 (112)
|..+|+...+.+|++.+|||+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+.....+.+|+|
T Consensus 143 i~~~~~~~~~~~~~~~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~R 222 (236)
T cd03149 143 VRFKGTKAQFLDFNPKCLLPKSLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFR 222 (236)
T ss_pred cccCCcceeeccCCHHHHCCCCCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCc
Confidence 45667777787899999999888999999999999999999999999999999999999999986443333445889999
Q ss_pred CCCCCCCCEEEEee
Q psy3903 85 PLQFIHSRTVRTNI 98 (112)
Q Consensus 85 p~Qpln~R~V~~~~ 98 (112)
|+||+|||.|+.+|
T Consensus 223 p~Q~ln~R~v~~~f 236 (236)
T cd03149 223 PPQPLKGRTVRASF 236 (236)
T ss_pred CCCCCCCCEEEecC
Confidence 99999999999875
No 3
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=6.3e-34 Score=214.93 Aligned_cols=95 Identities=31% Similarity=0.459 Sum_probs=83.1
Q ss_pred CCCCCCceeEecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNV 83 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~ 83 (112)
.|..+++.+.+..|++.+|||+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+.....|.+|+
T Consensus 142 ~i~~~~~~~~~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~ 221 (236)
T cd03118 142 EVRHKDTVVEFNPFDPSCLLPACRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNF 221 (236)
T ss_pred hcCcCCceeeecCCCHHHHcccCCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCC
Confidence 34566777777789999999988999999999999999999999999999999999999999998644333345688999
Q ss_pred CCCCCCCCCEEEEee
Q psy3903 84 RPLQFIHSRTVRTNI 98 (112)
Q Consensus 84 Rp~Qpln~R~V~~~~ 98 (112)
||+||||||.|+.+|
T Consensus 222 Rp~Qpln~R~V~~~f 236 (236)
T cd03118 222 RPLQPLMNRKVRSSF 236 (236)
T ss_pred CCCCCCCCCEEEecC
Confidence 999999999999875
No 4
>KOG0382|consensus
Probab=100.00 E-value=5.9e-34 Score=218.28 Aligned_cols=94 Identities=33% Similarity=0.621 Sum_probs=86.8
Q ss_pred CCCCCCCceeEecCCCCCccCCC-CCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCC
Q psy3903 3 TLCPVSGTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGN 81 (112)
Q Consensus 3 ~~i~~~g~~~~i~~~~l~~llp~-~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~ 81 (112)
..|.++|+++.+.+|+++.|||. ..+||+|.||||||||+|+|+|+||++|+.||.+||.+||.++....++ .+.+
T Consensus 168 ~~I~~k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~~~~~---~~~~ 244 (262)
T KOG0382|consen 168 KRIKYKGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFDEEGE---PLVN 244 (262)
T ss_pred hccccCCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhCcccc---cccc
Confidence 36889999999999999999997 8999999999999999999999999999999999999999998765442 6999
Q ss_pred CCCCCCCCCCCEEEEeee
Q psy3903 82 NVRPLQFIHSRTVRTNID 99 (112)
Q Consensus 82 N~Rp~Qpln~R~V~~~~~ 99 (112)
||||+||||+|.|++++.
T Consensus 245 N~Rp~Qpln~R~V~~~~~ 262 (262)
T KOG0382|consen 245 NFRPLQPLNGRVVRASFP 262 (262)
T ss_pred cCCcCcCCCCCeEecccC
Confidence 999999999999999863
No 5
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=1e-33 Score=215.15 Aligned_cols=95 Identities=24% Similarity=0.526 Sum_probs=82.5
Q ss_pred CCCCCCceeEecCCCCCccCCCC-CCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPET-NSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNN 82 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N 82 (112)
.|..+++.+.+..|++.+|||.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..........|.+|
T Consensus 154 ~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~~N 233 (249)
T cd03126 154 EVKYKDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVNN 233 (249)
T ss_pred hcccCCceeEcCCCCHHHhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCcccCC
Confidence 35567787778789999999965 67999999999999999999999999999999999999998754333334568999
Q ss_pred CCCCCCCCCCEEEEee
Q psy3903 83 VRPLQFIHSRTVRTNI 98 (112)
Q Consensus 83 ~Rp~Qpln~R~V~~~~ 98 (112)
+||+||||||.|+++|
T Consensus 234 ~Rp~QplngR~V~~~f 249 (249)
T cd03126 234 YRQVQPFNERLVFASF 249 (249)
T ss_pred CCCCCCCCCCEEEecC
Confidence 9999999999999875
No 6
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=1.7e-33 Score=214.94 Aligned_cols=95 Identities=28% Similarity=0.543 Sum_probs=83.9
Q ss_pred CCCCCCceeEecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNV 83 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~ 83 (112)
.|..+++.+.+..|++.+|||+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+.....|.+|+
T Consensus 165 ~i~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~~~~~~~~N~ 244 (259)
T cd03119 165 SIKTKGKQAPFTNFDPSCLLPASLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGEPPCPMVDNW 244 (259)
T ss_pred HhccCCceeeecCCCHHHHcCCCCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCCccccccCCC
Confidence 35567777778789999999988899999999999999999999999999999999999999998654433445689999
Q ss_pred CCCCCCCCCEEEEee
Q psy3903 84 RPLQFIHSRTVRTNI 98 (112)
Q Consensus 84 Rp~Qpln~R~V~~~~ 98 (112)
||+||||||.|+.+|
T Consensus 245 Rp~Qpln~R~V~~~~ 259 (259)
T cd03119 245 RPPQPLKGRKVRASF 259 (259)
T ss_pred CCCCCCCCCEEEecC
Confidence 999999999999874
No 7
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=3.1e-33 Score=213.32 Aligned_cols=95 Identities=48% Similarity=0.824 Sum_probs=84.3
Q ss_pred CCCCCCceeEecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNV 83 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~ 83 (112)
.|..+++.+.+..|++..|||...+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+.....+.+|+
T Consensus 161 ~i~~~~~~~~~~~~~l~~Llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~ 240 (256)
T cd03121 161 SIRYKGDAYFLQDLSIELLLPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSPNF 240 (256)
T ss_pred ccccCCceeecCCCCHHHHCCCCCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCCCC
Confidence 46677888888889999999988999999999999999999999999999999999999999998654333345689999
Q ss_pred CCCCCCCCCEEEEee
Q psy3903 84 RPLQFIHSRTVRTNI 98 (112)
Q Consensus 84 Rp~Qpln~R~V~~~~ 98 (112)
||+||+|||.|+.+.
T Consensus 241 Rp~Q~ln~R~V~~~~ 255 (256)
T cd03121 241 RPVQPLNNRPVRTNI 255 (256)
T ss_pred CCCCCCCCCeEEeeC
Confidence 999999999999764
No 8
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=99.98 E-value=1.2e-32 Score=209.53 Aligned_cols=92 Identities=26% Similarity=0.566 Sum_probs=80.4
Q ss_pred CCCCCCceeEecCCCCCccCCCC-CCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPET-NSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNN 82 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N 82 (112)
.|..+++.+.+..|++.+|||.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.... ...|.+|
T Consensus 156 ~i~~~~~~~~~~~~~~~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~~---~~~l~~N 232 (249)
T cd03125 156 KIKYAGQTTTLTSLDVRDMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDHH---NKTIRND 232 (249)
T ss_pred hcccCCceeecCCCCHHHhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhcccC---CCcccCC
Confidence 35567888888889999999965 6799999999999999999999999999999999999998654322 2458999
Q ss_pred CCCCCCCCCCEEEEee
Q psy3903 83 VRPLQFIHSRTVRTNI 98 (112)
Q Consensus 83 ~Rp~Qpln~R~V~~~~ 98 (112)
+||+||||||.|+++|
T Consensus 233 ~Rp~Qpln~R~V~~~~ 248 (249)
T cd03125 233 YRRTQPLNHRVVEANF 248 (249)
T ss_pred CCCCCCCCCCeEEeec
Confidence 9999999999999875
No 9
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=99.98 E-value=1.6e-32 Score=208.56 Aligned_cols=91 Identities=27% Similarity=0.594 Sum_probs=80.1
Q ss_pred CCCCCceeEecCCCCCccCCCC-CCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy3903 5 CPVSGTSVPIRHLSLRSFMPET-NSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNV 83 (112)
Q Consensus 5 i~~~g~~~~i~~~~l~~llp~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~ 83 (112)
|..+++.+.+..|++.+|||.. ..||+|.||||||||+|+|+|+||++|+.||.+||++||+++.... ...|.+|+
T Consensus 157 i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~---~~~~~~N~ 233 (248)
T cd03123 157 IKYKGQETTVPGFNVRELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTH---NKTLQNNY 233 (248)
T ss_pred hCcCCcEEecCCCCHHHhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccC---CCcccCCC
Confidence 5567888888789999999975 5799999999999999999999999999999999999998765332 24589999
Q ss_pred CCCCCCCCCEEEEee
Q psy3903 84 RPLQFIHSRTVRTNI 98 (112)
Q Consensus 84 Rp~Qpln~R~V~~~~ 98 (112)
||+||||||.|+.+|
T Consensus 234 Rp~Qpln~R~V~~~~ 248 (248)
T cd03123 234 RATQPLNGRVVEASF 248 (248)
T ss_pred CCCCCCCCCEEEecC
Confidence 999999999999875
No 10
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=99.98 E-value=1.9e-32 Score=208.98 Aligned_cols=95 Identities=28% Similarity=0.562 Sum_probs=81.1
Q ss_pred CCCCCCceeEecCCCCCccCCC--CCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCC-----CC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPE--TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQ-----PK 76 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~--~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~-----~~ 76 (112)
.|..+++...+..|++.+|||. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+. ..
T Consensus 155 ~i~~~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~~ 234 (256)
T cd03120 155 DIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCD 234 (256)
T ss_pred hhccCCceeeecCCCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhcccccccccccc
Confidence 3556787778878999999996 4789999999999999999999999999999999999999998542211 12
Q ss_pred CCCCCCCCCCCCCCCCEEEEee
Q psy3903 77 APLGNNVRPLQFIHSRTVRTNI 98 (112)
Q Consensus 77 ~~~~~N~Rp~Qpln~R~V~~~~ 98 (112)
..|.+|+||+||+|||.|+.+|
T Consensus 235 ~~l~~N~Rp~Qpln~R~v~~~~ 256 (256)
T cd03120 235 GLLGDNFRPTQPLSDRVIRAAF 256 (256)
T ss_pred ccccCCCCCCCCCCCCEEEecC
Confidence 3478999999999999999875
No 11
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=99.97 E-value=2.5e-32 Score=207.44 Aligned_cols=91 Identities=22% Similarity=0.478 Sum_probs=79.9
Q ss_pred CCCCCceeEecCCCCCccCCCC-CCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy3903 5 CPVSGTSVPIRHLSLRSFMPET-NSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNV 83 (112)
Q Consensus 5 i~~~g~~~~i~~~~l~~llp~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~ 83 (112)
|..+++.+.+..|++.+|||.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.... ...|.+|+
T Consensus 155 i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~---~~~l~~N~ 231 (247)
T cd03150 155 ISEEESETVVPGLDVSALLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPH---DSRLQLNF 231 (247)
T ss_pred hCCCCceeecCCCCHHHHcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccC---CCcccCCC
Confidence 5567777778789999999975 5799999999999999999999999999999999999999775332 23589999
Q ss_pred CCCCCCCCCEEEEee
Q psy3903 84 RPLQFIHSRTVRTNI 98 (112)
Q Consensus 84 Rp~Qpln~R~V~~~~ 98 (112)
||+||||||.|+++|
T Consensus 232 Rp~Qpln~R~V~~~~ 246 (247)
T cd03150 232 RATQPLNGRKIEASF 246 (247)
T ss_pred CCCCCCCCCeEEeeC
Confidence 999999999999875
No 12
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=99.97 E-value=1.3e-31 Score=201.99 Aligned_cols=91 Identities=33% Similarity=0.637 Sum_probs=79.4
Q ss_pred CCCCCceeEecCCCCCccCCCC--CCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy3903 5 CPVSGTSVPIRHLSLRSFMPET--NSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNN 82 (112)
Q Consensus 5 i~~~g~~~~i~~~~l~~llp~~--~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N 82 (112)
|..+++.+.+..|++.+|||.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..... ....|.+|
T Consensus 142 i~~~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~-~~~~l~~N 220 (234)
T cd03117 142 IPQKGGSTNLTPFSLRSLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTD-NGQPMVNN 220 (234)
T ss_pred cccCCceeecCCCCHHHHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhccccc-CCCcccCC
Confidence 5567777888889999999964 68999999999999999999999999999999999999999864321 23458999
Q ss_pred CCCCCCCCCCEEEE
Q psy3903 83 VRPLQFIHSRTVRT 96 (112)
Q Consensus 83 ~Rp~Qpln~R~V~~ 96 (112)
+||+||+|||.|++
T Consensus 221 ~Rp~Q~ln~R~v~~ 234 (234)
T cd03117 221 FRPVQPLNGRVVYA 234 (234)
T ss_pred CCCCCCCCCCEEeC
Confidence 99999999999974
No 13
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=99.97 E-value=3.9e-31 Score=201.45 Aligned_cols=92 Identities=35% Similarity=0.558 Sum_probs=79.3
Q ss_pred CCCCCCceeEecCCCCCccCCC-CCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCC--CCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSE--EQPKAPLG 80 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~-~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~--~~~~~~~~ 80 (112)
.|..+++.+.+..|++.+|||. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.... ..+...|.
T Consensus 158 ~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~~ 237 (253)
T cd03122 158 NVSRPGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYLP 237 (253)
T ss_pred hcCCCCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCcccc
Confidence 3556788888888999999996 47899999999999999999999999999999999999999986431 11234589
Q ss_pred CCCCCCCCCCCCEEE
Q psy3903 81 NNVRPLQFIHSRTVR 95 (112)
Q Consensus 81 ~N~Rp~Qpln~R~V~ 95 (112)
+|+||+||+|||.|+
T Consensus 238 ~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 238 NNGRPQQPLGSRTVF 252 (253)
T ss_pred CCCcCCCCCCCCEec
Confidence 999999999999986
No 14
>PLN02202 carbonate dehydratase
Probab=99.96 E-value=1.6e-30 Score=201.20 Aligned_cols=80 Identities=30% Similarity=0.461 Sum_probs=72.8
Q ss_pred ecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCE
Q psy3903 14 IRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNVRPLQFIHSRT 93 (112)
Q Consensus 14 i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Qpln~R~ 93 (112)
+..|++..|+|...+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .|.+|+||+||||||.
T Consensus 189 ~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~~~~~-------~l~~N~RpvQplngR~ 261 (284)
T PLN02202 189 VGKIDTRHIERKTRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDK-------SFKNNSRPCQPLNGRR 261 (284)
T ss_pred ccccCHHHhCccccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHHhhhc-------ccCCCCCCCCCCCCCE
Confidence 446899999999899999999999999999999999999999999999999998632 3889999999999999
Q ss_pred EEEeeec
Q psy3903 94 VRTNIDF 100 (112)
Q Consensus 94 V~~~~~~ 100 (112)
|+...++
T Consensus 262 V~~~~~~ 268 (284)
T PLN02202 262 VEMFHDH 268 (284)
T ss_pred EEEecCe
Confidence 9987655
No 15
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=99.96 E-value=2.3e-30 Score=194.19 Aligned_cols=88 Identities=35% Similarity=0.643 Sum_probs=79.5
Q ss_pred CCCCCCceeEecCCCCCccCCCC-CCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy3903 4 LCPVSGTSVPIRHLSLRSFMPET-NSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNN 82 (112)
Q Consensus 4 ~i~~~g~~~~i~~~~l~~llp~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N 82 (112)
.|+.+|+...+..|++.+|||.. .+||+|.||||||||+|+|+|+||++|+.||.+||++|++++... ...+.+|
T Consensus 139 ~~~~~~~~~~~~~~~l~~llp~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~----~~~~~~N 214 (227)
T cd00326 139 KIKYKGKETTLPPFDLSDLLPSSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDRE----GKPLVNN 214 (227)
T ss_pred hcCcCCcEeecCCCCHHHHCCCCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcC----CCcccCC
Confidence 35667888888889999999987 999999999999999999999999999999999999999998644 2358899
Q ss_pred CCCCCCCCCCEEE
Q psy3903 83 VRPLQFIHSRTVR 95 (112)
Q Consensus 83 ~Rp~Qpln~R~V~ 95 (112)
+||+|++|||.|+
T Consensus 215 ~Rp~Q~ln~R~v~ 227 (227)
T cd00326 215 YRPVQPLNGRVVY 227 (227)
T ss_pred CCCCCCCCCCeeC
Confidence 9999999999984
No 16
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=99.96 E-value=1.3e-29 Score=189.02 Aligned_cols=77 Identities=38% Similarity=0.673 Sum_probs=70.9
Q ss_pred CceeEecCC-CCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy3903 9 GTSVPIRHL-SLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNVRPLQ 87 (112)
Q Consensus 9 g~~~~i~~~-~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Q 87 (112)
++...+..+ ++.+|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||.++ +.+|+||+|
T Consensus 138 ~~~~~~~~~~~~~~llp~~~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~----------~~~N~Rp~Q 207 (216)
T cd03124 138 GTEVNLPAILDPNELLPESRSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV----------YPNNARPVQ 207 (216)
T ss_pred CCceeccCCCCHHHhcccCCceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc----------cCCCCCCCC
Confidence 556667676 999999988999999999999999999999999999999999999999874 468999999
Q ss_pred CCCCCEEE
Q psy3903 88 FIHSRTVR 95 (112)
Q Consensus 88 pln~R~V~ 95 (112)
|+|||.|+
T Consensus 208 ~ln~R~v~ 215 (216)
T cd03124 208 PLNGREVL 215 (216)
T ss_pred CCCCceee
Confidence 99999987
No 17
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=187.28 Aligned_cols=78 Identities=32% Similarity=0.726 Sum_probs=71.5
Q ss_pred CceeEecC-CCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy3903 9 GTSVPIRH-LSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLKQGSEEQPKAPLGNNVRPLQ 87 (112)
Q Consensus 9 g~~~~i~~-~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Q 87 (112)
|++..+.. ||++.|||....||+|+||||||||+|+|.|+|+++|+.+|.+|+++|.++ |..|.||+|
T Consensus 171 ge~~~l~~~id~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~-----------~~~N~RPVQ 239 (250)
T COG3338 171 GEEETLDETIDLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKL-----------MGHNARPVQ 239 (250)
T ss_pred ccccceeeccChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHH-----------hCCCCCCCc
Confidence 55555655 999999999999999999999999999999999999999999999999998 568999999
Q ss_pred CCCCCEEEEe
Q psy3903 88 FIHSRTVRTN 97 (112)
Q Consensus 88 pln~R~V~~~ 97 (112)
|+|+|.|..+
T Consensus 240 p~N~R~I~~~ 249 (250)
T COG3338 240 PLNDRLILEA 249 (250)
T ss_pred CCCCcEEEec
Confidence 9999998753
No 18
>PLN02179 carbonic anhydrase
Probab=99.68 E-value=1.8e-17 Score=125.61 Aligned_cols=47 Identities=28% Similarity=0.560 Sum_probs=41.9
Q ss_pred ceeEecCCCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccC
Q psy3903 10 TSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYM 56 (112)
Q Consensus 10 ~~~~i~~~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~i 56 (112)
+...+..+++.+|+|+..+||+|.||||||||+|+|+|+||++|+-+
T Consensus 184 ~~~~~~~l~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 184 KEINLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred cceeecccCHHHhCcCCCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 34456668999999988999999999999999999999999999865
No 19
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=45.07 E-value=5.8 Score=28.11 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCCCccceEEEEecccccCCHHHH-----HHHHHhh
Q psy3903 38 HPGCWETTVWIIYNRPIYMTKQEL-----YALRRLK 68 (112)
Q Consensus 38 tPpC~E~V~WiV~~~pi~iS~~Ql-----~~fr~l~ 68 (112)
+|||.|..+|=||..|-..+...+ ..+|++.
T Consensus 46 ~~~C~e~~V~dV~~~~kNtTe~e~~CrA~~vLr~~y 81 (138)
T smart00190 46 TNLCTEMMVPDVLAATKNTTEKELFCRALKVLRNFY 81 (138)
T ss_pred CCCcccccHHHHhcccCCCcchhHhhHHHHHHHHHH
Confidence 799999999999999999998883 3455554
No 20
>PHA02614 Major capsid protein VP1; Provisional
Probab=35.17 E-value=22 Score=28.84 Aligned_cols=48 Identities=17% Similarity=0.530 Sum_probs=29.6
Q ss_pred CCCCccCCC-----CCCce-EEeeeccCCCCc---cceEEEEec----------ccccCCHHHHHHH
Q psy3903 17 LSLRSFMPE-----TNSYM-TYEGSTTHPGCW---ETTVWIIYN----------RPIYMTKQELYAL 64 (112)
Q Consensus 17 ~~l~~llp~-----~~~yy-~Y~GSLTtPpC~---E~V~WiV~~----------~pi~iS~~Ql~~f 64 (112)
+.++.+-|| +..|| +|.|.++|||-- ..++=+.+. +-++||...|--|
T Consensus 200 yPVE~W~PDPskNENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyls~aDi~G~ 266 (363)
T PHA02614 200 YPVECWCPDPSKNENTRYFGTYTGGANTPPVLQFTNTSTTVLLDENGVGPLCKGDGLYLSCADICGF 266 (363)
T ss_pred cceEeECCCCCcCcCceeeEeecCCCCCCCeEEecCcceEEEEcCCCcccCccCCcEEEEhhhcccc
Confidence 666667763 45676 999999999953 333433333 3456666655543
No 21
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=31.90 E-value=34 Score=27.13 Aligned_cols=25 Identities=20% Similarity=0.652 Sum_probs=15.0
Q ss_pred CCCCccCCC-----CCCce-EEeeeccCCCC
Q psy3903 17 LSLRSFMPE-----TNSYM-TYEGSTTHPGC 41 (112)
Q Consensus 17 ~~l~~llp~-----~~~yy-~Y~GSLTtPpC 41 (112)
+.++.+-|| +..|| +|.|..+|||-
T Consensus 182 yPVE~W~PDPskNENtRYFG~~tGG~~TPPV 212 (297)
T PF00718_consen 182 YPVECWCPDPSKNENTRYFGSYTGGANTPPV 212 (297)
T ss_dssp SBTTTEEE-TTSSTTEEEEEEEE-SSS---E
T ss_pred cceEEECCCCCcCcCceeeEeecCCCCCCCe
Confidence 777777763 44676 99999999994
No 22
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=30.96 E-value=38 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=13.9
Q ss_pred cccccCCHHHHHHHHHh
Q psy3903 51 NRPIYMTKQELYALRRL 67 (112)
Q Consensus 51 ~~pi~iS~~Ql~~fr~l 67 (112)
..|++|+.+|+..|-..
T Consensus 2 ~~plpi~e~~i~~~~s~ 18 (47)
T PF04688_consen 2 KSPLPIDEEQINQLISA 18 (47)
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 47999999999888544
No 23
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=26.12 E-value=32 Score=20.93 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=20.4
Q ss_pred CCCCccCCCCCCceEEeeeccCCCCccceEEEEecccccCCHHHH
Q psy3903 17 LSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQEL 61 (112)
Q Consensus 17 ~~l~~llp~~~~yy~Y~GSLTtPpC~E~V~WiV~~~pi~iS~~Ql 61 (112)
+.|....|...=||+-+||.- ...|.++..||.|...-.
T Consensus 18 v~l~~~~~~~~I~YT~DGs~P------t~~s~~Y~~Pi~i~~~~~ 56 (75)
T PF03174_consen 18 VTLSSDTPGATIYYTLDGSEP------TKSSPLYTGPITIPESGT 56 (75)
T ss_dssp EEEE-SSTTSEEEEESSSSSS----------EE--CCC--B--S-
T ss_pred EEEEeCCCCCEEEEEcCCCcc------cccCcccCcCEEeCCCcE
Confidence 445555566677999999654 678999999999988765
No 24
>PRK15276 putative fimbrial subunit SteE; Provisional
Probab=26.04 E-value=40 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=13.3
Q ss_pred CCceEEeeeccCCC-Cc
Q psy3903 27 NSYMTYEGSTTHPG-CW 42 (112)
Q Consensus 27 ~~yy~Y~GSLTtPp-C~ 42 (112)
..-.++.|+|+.|| |.
T Consensus 14 ~~~v~~~G~l~~pp~C~ 30 (153)
T PRK15276 14 ADNLTFHGKLINPPACT 30 (153)
T ss_pred ceEEEEEEEEEcCCCCE
Confidence 45678999999997 96
No 25
>PHA02771 hypothetical protein; Provisional
Probab=21.20 E-value=57 Score=21.49 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=15.5
Q ss_pred EEecccccCCHHHHHHHH
Q psy3903 48 IIYNRPIYMTKQELYALR 65 (112)
Q Consensus 48 iV~~~pi~iS~~Ql~~fr 65 (112)
++|++|+.||.+|.+++-
T Consensus 24 L~F~~~l~ite~ey~ELi 41 (90)
T PHA02771 24 LMFNKEIIVSYNQFEEII 41 (90)
T ss_pred hhcCCCeEecHHHHHHHH
Confidence 579999999999988764
Done!