RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3903
(112 letters)
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 114 bits (286), Expect = 6e-33
Identities = 27/98 (27%), Positives = 43/98 (43%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
T V + MP Y TY GS T P E+ WI+ P+ ++ +L R L
Sbjct: 150 DTQVAMGPFDPSCLMPACRDYWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQLSMFRTLL 209
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTNIDFKQTLTQ 106
+ + + NN RPLQ + R +R++ +T +
Sbjct: 210 FSGRGEEEDVMVNNYRPLQPLRDRKLRSSFRLDRTKMR 247
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 110 bits (277), Expect = 2e-31
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
G + L S +P + Y TY GS T P E+ WI+ +PI ++ Q+L R L
Sbjct: 174 GKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLL 233
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTNI 98
+E + A L +N RP Q + R VR +
Sbjct: 234 CTAEGEAAAFLVSNHRPPQPLKGRKVRASF 263
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 110 bits (276), Expect = 3e-31
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
G P S P + Y TY+GS T P C E VW++ P+ ++ ++ LR L
Sbjct: 170 GKEAPFTKFDPSSLFPASRDYWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLL 229
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTNIDFK 101
+E +P PL +N RP Q I++R VR + FK
Sbjct: 230 SSAENEPPVPLVSNWRPPQPINNRVVRAS--FK 260
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 109 bits (274), Expect = 4e-31
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
G S + R +PE+ Y TY GS T P E WI+ PI ++ +++ R+L
Sbjct: 170 GKSADFTNFDPRGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQVLKFRKLN 229
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTNIDFK 101
E +P+ + +N RP Q + +R ++ + FK
Sbjct: 230 FNGEGEPEELMVDNWRPAQPLKNRQIKAS--FK 260
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 109 bits (274), Expect = 4e-31
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
G P + + +P + + TY GS THP +E+ WII I ++ ++L R L
Sbjct: 171 GKRAPFTNFDPSTLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLL 230
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
E P+ +N RP Q + RTVR +
Sbjct: 231 SNVEGDNAVPMQHNNRPTQPLKGRTVRAS 259
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 108 bits (272), Expect = 1e-30
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
GT + +S +P + Y TY GS T P E+ WI+ PI ++++++ R L
Sbjct: 178 GTKAQFSCFNPKSLLPASRHYWTYPGSLTTPPLSESVTWIVLREPISISERQMGKFRSLL 237
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
SE+ + + NN RP Q + R V+ +
Sbjct: 238 FTSEDDERIHMVNNFRPPQPLKGRVVKAS 266
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 103 bits (259), Expect = 7e-29
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
+ S+R P+ + Y GS T P C+++ +W ++NR ++ +L L+
Sbjct: 171 DQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQET 230
Query: 68 KQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+EE P PL N R Q ++ RT+ +
Sbjct: 231 LSSTEEDPSEPLVQNYRVPQPLNQRTIFAS 260
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 102 bits (256), Expect = 3e-28
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
G + L ++ +P Y TY GS T P C E W + + +++ +++ L
Sbjct: 172 GQRTTLTGLDVQDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENS 231
Query: 68 KQGSEEQPKAPLGNNVRPLQFIHSRTVRTNIDFKQTLTQCFVAP 111
+ + N+ R Q ++ R V +N ++
Sbjct: 232 LLDHRNK---TIHNDYRRTQPLNHRVVESNFPNQEYTLGSEFQA 272
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 100 bits (250), Expect = 2e-27
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
G+ + L + + +P + Y YEGS T P C + +W ++N+ + ++ ++L+ L
Sbjct: 169 GSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDT 228
Query: 68 KQGSEEQPKAPLGNNVRPLQFIHSRTVRTNI 98
G + L N R Q ++ R + +
Sbjct: 229 LWGPGDS---RLQLNFRATQPLNGRVIEASF 256
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 98.3 bits (245), Expect = 1e-26
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
G + ++ +PE T Y Y GS T P C T +W ++ P+ +++++L AL
Sbjct: 169 GQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETA 228
Query: 68 KQGSEEQPKA--PLGNNVRPLQFIHSRTVRTNI 98
+ + + NN R +Q R V T+
Sbjct: 229 LYCTHMDDPSPREMINNFRQVQKFDERLVYTSF 261
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 97.2 bits (242), Expect = 3e-26
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
+ LR +P SY Y GS T P C E WI++ RP+ ++ +L A +
Sbjct: 177 EKETFLDPFILRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSI 236
Query: 68 ---KQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+Q + L NN RP Q ++ R V +
Sbjct: 237 FTTEQQDHVKSVEYLRNNFRPQQALNDRVVSKS 269
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 96.7 bits (241), Expect = 3e-26
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 9 GTSVPIRHLSLRSFMPE---TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALR 65
++ +R SL+ +P +Y Y GS T P C ET +W +Y +PI + K +
Sbjct: 166 HSTSTVRESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFLEFS 225
Query: 66 RLKQGSEEQPKAPLGNNVRPLQFIHSRTVR 95
+ E+Q + +NVRPLQ + R V
Sbjct: 226 KNLYYDEDQK-LNMKDNVRPLQPLGKRQVF 254
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 97.2 bits (242), Expect = 3e-26
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
G + L + +P T+ Y Y GS T P C +T WI++ + +++ +L +
Sbjct: 177 GKQAALDPFILLNLLPNSTDKYYIYNGSLTSPPCTDTVDWIVFKDTVSISESQLAVFCEV 236
Query: 68 ---KQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+Q L NN R Q+ SR V ++
Sbjct: 237 LTMQQSGYVMLMDYLQNNFREQQYKFSRQVFSS 269
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 96.4 bits (240), Expect = 5e-26
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 9 GTSVPIRHLSLRSFMPE---TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALR 65
S + SL +P+ Y Y GS T P C E VW ++ PI + ++++ A
Sbjct: 176 EMSTTMAESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQILAFS 235
Query: 66 RLKQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+ +EQ + +NVRPLQ + RTV +
Sbjct: 236 QKLYYDKEQT-VSMKDNVRPLQQLGQRTVIKS 266
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 94.1 bits (234), Expect = 7e-25
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 9 GTSVPIRHLSLRSFMPE--TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRR 66
G S I + + +P+ Y YEGS T P C E WI++ P+ +++ ++ RR
Sbjct: 194 GKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRR 253
Query: 67 LKQGSE-----EQPKAPLGNNVRPLQFIHSRTVRTN 97
L+ + E LG+N RP Q + R +R
Sbjct: 254 LRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAA 289
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 91.5 bits (227), Expect = 8e-24
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 6 PVSGTSVPIRHLSLRSFM-PETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYAL 64
T V I ++++++ + P + Y Y+GS T PGC E W ++ P +T++++
Sbjct: 200 SYGDTGVSIDNINVKTQLLPSSLKYAGYDGSLTTPGCDERVKWHVFTTPREVTREQMKLF 259
Query: 65 RRLKQGSEEQPKAPLGNNVRPLQFIHSRTV 94
+ G+ N R +Q + R V
Sbjct: 260 VDVTMGAHAG---ADVVNNRMIQDLGDREV 286
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 85.9 bits (213), Expect = 3e-22
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 7 VSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRR 66
+G + + +P+ Y + GS T P C E W++ ++ + + R
Sbjct: 144 TAGKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTR 203
Query: 67 LKQGSEEQPKAPLGNNVRPLQFIHSRTVR 95
N RP+Q +++R V
Sbjct: 204 A----------VGSENNRPVQPLNARVVI 222
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 88.2 bits (218), Expect = 3e-22
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 9 GTSVPI-RHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
+++P + L +P Y+TYEGS T P C E +W + +P ++ + R
Sbjct: 231 FSNLPAGTTIKLGELLPSDRDYVTYEGSLTTPPCSEGLLWHVMTQPQRISFGQWNRYRLA 290
Query: 68 KQGSEEQPKAPLGNNVRPLQFIHSRTVRTNIDFKQTLTQCFVAP 111
E H R + N + + P
Sbjct: 291 VGLKECNSTET---AADAGHHHHHRRLLHNHAHLEEVPAATSEP 331
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 86.0 bits (213), Expect = 5e-22
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 9 GTSVPIRH-LSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
TS P L + +P Y TY G+T VWII+ PI + +L R L
Sbjct: 145 NTSAPFDSVFYLDNLLPSKLDYFTYLGTT--INHSADAVWIIFPTPINIHSDQLSKFRTL 202
Query: 68 KQGS-EEQPKAPLGNNVRPLQFIHSRTV 94
S E + N R ++ T
Sbjct: 203 LSLSNHEGKPHYITENYRNPYKLNDDTE 230
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 81.3 bits (201), Expect = 3e-20
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 9 GTSVPIRHLSLRSFMPETN--SYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRR 66
GTS L + N Y GS T P C E +W + P+ +T Q +++
Sbjct: 159 GTSTTTGQLDFGGLLDHFNRHGVYQYTGSLTTPPCTEEVMWNLSTEPLPLTVQGYNKVKK 218
Query: 67 LKQGSEEQPKAPLGNNVRPLQFIHSRTV 94
+ + N R Q +
Sbjct: 219 I-----------IKYNARYTQNALGQDN 235
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C
4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Length = 395
Score = 25.5 bits (55), Expect = 4.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 1 MKTLCPVSGTSVPIRHLSLRSFMPETNSYMTYEG 34
+ + G V +RH+ L + MT G
Sbjct: 297 ISKVLAEQGLDVDMRHILLVA------DVMTRTG 324
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 25.6 bits (56), Expect = 5.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 39 PGCWETTVWIIYNRPIY 55
P WE Y +PIY
Sbjct: 77 PSHWELQEDWKYGKPIY 93
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 24.9 bits (54), Expect = 7.3
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 39 PGCWETTVWIIYNRPIY 55
P W Y RPIY
Sbjct: 83 PSHWVMGQDGKYGRPIY 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.419
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,585,054
Number of extensions: 76400
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 28
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)