RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3903
(112 letters)
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 95.7 bits (237), Expect = 4e-26
Identities = 31/89 (34%), Positives = 41/89 (46%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
G P H P Y TY GS T P C E VW++ P+ ++ ++ LR L
Sbjct: 169 GKEAPFNHFDPSCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLF 228
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+E +P PL N RP Q I R VR +
Sbjct: 229 ASAENEPPVPLVGNWRPPQPIKGRVVRAS 257
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 94.9 bits (235), Expect = 6e-26
Identities = 28/93 (30%), Positives = 43/93 (46%)
Query: 5 CPVSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYAL 64
G P + + +P + + TY GS THP +E+ WII I ++ ++L
Sbjct: 165 IKTKGKRAPFTNFDPSTLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQF 224
Query: 65 RRLKQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
R L E P+ +N RP Q + RTVR +
Sbjct: 225 RSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRAS 257
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 92.6 bits (229), Expect = 6e-25
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
G S + R +PE+ Y TY GS T P E WI+ PI ++ +++ R+L
Sbjct: 169 GKSADFTNFDPRGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQVLKFRKLN 228
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
E +P+ + +N RP Q + +R ++ +
Sbjct: 229 FNGEGEPEELMVDNWRPAQPLKNRQIKAS 257
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 91.4 bits (226), Expect = 1e-24
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 9 GTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRLK 68
T V + MP Y TY GS T P E+ WI+ P+ ++ +L R L
Sbjct: 147 DTQVAMGPFDPSCLMPACRDYWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQLSMFRTLL 206
Query: 69 QGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+ + + NN RPLQ + R +R++
Sbjct: 207 FSGRGEEEDVMVNNYRPLQPLRDRKLRSS 235
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 88.3 bits (218), Expect = 3e-23
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 5 CPVSGTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYA 63
+ S+R P+ + Y GS T P C+++ +W ++NR ++ +L
Sbjct: 165 IRYKDQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEK 224
Query: 64 LRRLKQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
L+ +EE P PL N R Q ++ RT+ +
Sbjct: 225 LQETLSSTEEDPSEPLVQNYRVPQPLNQRTIFAS 258
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 80.7 bits (198), Expect = 2e-20
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 9 GTSVPIRHLSLRSFMPE-TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
G + ++ +PE T Y Y GS T P C T +W ++ P+ +++++L AL
Sbjct: 167 GQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETA 226
Query: 68 KQGSEEQPKAP--LGNNVRPLQFIHSRTVRTN 97
+ +P + NN R +Q R V T+
Sbjct: 227 LYCTHMDDPSPREMINNFRQVQKFDERLVYTS 258
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 78.0 bits (191), Expect = 2e-19
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 10 TSVPIRHLSLRSFMPE---TNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRR 66
++ +R SL+ +P +Y Y GS T P C ET +W +Y +PI + K + +
Sbjct: 167 STSTVRESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFLEFSK 226
Query: 67 LKQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
E+Q K + +NVRPLQ + R V +
Sbjct: 227 NLYYDEDQ-KLNMKDNVRPLQPLGKRQVFKS 256
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 77.6 bits (190), Expect = 3e-19
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 8 SGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRRL 67
S T L L + Y Y GS T P C E VW ++ PI + ++++ A +
Sbjct: 174 STTMAESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQILAFSQK 233
Query: 68 KQGSEEQPKAPLGNNVRPLQFIHSRTVRTN 97
+++ + +NVRPLQ + RTV +
Sbjct: 234 -LYYDKEQTVSMKDNVRPLQQLGQRTVIKS 262
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 70.6 bits (172), Expect = 6e-17
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 7 VSGTSVPIRHLSLRSFMPETNSYMTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYALRR 66
+G + + +P+ Y + GS T P C E W++ ++ + + R
Sbjct: 144 TAGKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTR 203
Query: 67 LKQGSEEQPKAPLGNNVRPLQFIHSRTV 94
N RP+Q +++R V
Sbjct: 204 A----------VGSENNRPVQPLNARVV 221
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 23.6 bits (51), Expect = 7.4
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 30 MTYEGSTTHPGCWETTVWIIYNRPIYMTKQELYAL 64
+E T P W+T++ I P Y+ + L +
Sbjct: 173 SIHEYEVTIPTLWQTSMDFIKKNPEYLDENNLMSF 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.419
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,493
Number of extensions: 15855
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 13
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)