BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3908
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAJ3|GAREL_MOUSE GRB2-associated and regulator of MAPK protein-like OS=Mus musculus
GN=Gareml PE=2 SV=2
Length = 880
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 9 LATAKWSDEGQYLREFVSKNSLPTVVKIIKGQYGNLGVPTLPSPGLQSTVLLVSAGKRQK 68
LA +WS L VS+ LPT+ + G+Y + G+ +L+ RQ
Sbjct: 8 LAGLRWSMGAFPLDLIVSRCRLPTLACLGPGEY---------AEGVSERDILLIHSCRQW 58
Query: 69 IIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEEGKSMR 110
A L+EG +G +IDIP YPG F+LL E+ + +R
Sbjct: 59 TTVTAHTLEEGHYVIG--PKIDIPLQYPGKFKLL-EQARDVR 97
>sp|Q75VX8|GAREL_HUMAN GRB2-associated and regulator of MAPK protein-like OS=Homo sapiens
GN=GAREML PE=2 SV=3
Length = 874
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 9 LATAKWSDEGQYLREFVSKNSLPTVVKIIKGQYGNLGVPTLPSPGLQSTVLLVSAGKRQK 68
LA +WS L VS+ LPT+ + G+Y + G+ +L+ RQ
Sbjct: 8 LAGLRWSMGAFPLDLIVSRCRLPTLACLGPGEY---------AEGVSERDILLIHSCRQW 58
Query: 69 IIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEEGKSMR 110
A L+EG +G +IDIP YPG F+LL E+ + +R
Sbjct: 59 TTVTAHTLEEGHYVIG--PKIDIPLQYPGKFKLL-EQARDVR 97
>sp|Q7ZVU1|GAREM_DANRE GRB2-associated and regulator of MAPK protein OS=Danio rerio
GN=garem PE=2 SV=1
Length = 867
Score = 36.6 bits (83), Expect = 0.087, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 14 WSDEGQYLREFVSKNSLPTVVKIIKGQYGNLGVPTLPSPGLQSTVLLVSAGKRQKIIAQA 73
WS L +S LP +VK+ G+ GL+ L+ RQ A
Sbjct: 16 WSTTTLPLDRLISSYRLPQIVKLDSGE---------SVEGLRENDYLLIHSCRQWTTITA 66
Query: 74 VKLKEGRRFVGVGSRIDIPENYPGYFELLSEE 105
L+EG +G +I+IP +Y G F+LL ++
Sbjct: 67 HSLEEGHYVIG--PKIEIPVHYEGQFKLLEQD 96
>sp|Q3UFT3|GAREM_MOUSE GRB2-associated and regulator of MAPK protein OS=Mus musculus
GN=Garem PE=1 SV=2
Length = 876
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 9 LATAKWSDEGQYLREFVSKNSLPTVVKIIKGQYGNLGVPTLPSPGLQSTVLLVSAGKRQK 68
L KWS L VS LP + ++ G+ GL+ L+ RQ
Sbjct: 11 LKDVKWSPVAMPLDLLVSTYRLPQIARLDSGEC---------VEGLRENDFLLIHSCRQW 61
Query: 69 IIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEE 105
A L+EG +G +I+IP +Y G F+LL ++
Sbjct: 62 TTITAHSLEEGHYVIG--PKIEIPVHYAGQFKLLEQD 96
>sp|Q9H706|GAREM_HUMAN GRB2-associated and regulator of MAPK protein OS=Homo sapiens
GN=GAREM PE=1 SV=2
Length = 876
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 9 LATAKWSDEGQYLREFVSKNSLPTVVKIIKGQYGNLGVPTLPSPGLQSTVLLVSAGKRQK 68
L KWS L VS LP + ++ G+ GL+ L+ RQ
Sbjct: 11 LKDVKWSSVAVPLDLLVSTYRLPQIARLDNGEC---------VEGLRENDYLLIHSCRQW 61
Query: 69 IIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEE 105
A L+EG +G +I+IP +Y G F+LL ++
Sbjct: 62 TTITAHSLEEGHYVIG--PKIEIPVHYAGQFKLLEQD 96
>sp|Q55G83|ABKC_DICDI Probable serine/threonine-protein kinase abkC OS=Dictyostelium
discoideum GN=abkC PE=3 SV=1
Length = 689
Score = 33.1 bits (74), Expect = 1.00, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 117 EISRRKIEAGCLIR--EAIKGIVA-KYDEEGNLQSDGARIVNIGEVLLP 162
+I + KIE L+ EAIK IV K DEE NL G R++ +G +LLP
Sbjct: 121 KIIKPKIEIQDLLNPFEAIKEIVGNKEDEEINLVKIGIRVLELGLILLP 169
>sp|Q6NRE4|GAREM_XENLA GRB2-associated and regulator of MAPK protein OS=Xenopus laevis
GN=garem PE=2 SV=1
Length = 876
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 9 LATAKWSDEGQYLREFVSKNSLPTVVKI-IKGQYGNLGVPTLPSPGLQSTVLLVSAGKRQ 67
L KWS L VS LP +V++ G+ GL+ L+ RQ
Sbjct: 8 LKDVKWSSASFPLDLLVSSYRLPQLVRVDCAGE---------NVEGLRENDCLLIHSCRQ 58
Query: 68 KIIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEE 105
A L+EG +G +I+IP +Y G F+LL ++
Sbjct: 59 WTTITAHSLEEGHYVIG--PKIEIPVHYGGQFKLLEQD 94
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 92 PENYPGYFELLSEEGKSMRCCETVLEISRRKIEAGCLI-REAIKGIVAKYDEEGNLQ 147
PE YPG ++ EG+ +R E LE K++ G + R + G V ++ + +L
Sbjct: 375 PEKYPGANYVIDPEGRRIRLMENNLETVAEKLDIGWTVERHLLDGDVVLFNRQPSLH 431
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 61 VSAGKRQKIIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEEGKSMRCCETVLEISR 120
V+ Q ++ L+ RR+V G PE +PG + +G+ +R E V E
Sbjct: 415 VATEMTQTMVVNEQNLERARRYVRNG-----PEGHPGANYVTRPDGRRVRVTEKVCEELA 469
Query: 121 RKIEAGCLI-REAIKGIVAKYDEEGNLQ 147
++E G + R I G + ++ + +L
Sbjct: 470 ERVEPGWEVQRHLIDGDIIIFNRQPSLH 497
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 61 VSAGKRQKIIAQAVKLKEGRRFVGVGSRIDIPENYPGYFELLSEEGKSMRCCETVLEISR 120
V+ Q ++ L+ RR+V G PE +PG + +G+ +R E V E
Sbjct: 415 VATEMTQTMVVNEQNLERARRYVRNG-----PEGHPGANYVTRPDGRRVRVTEKVCEELA 469
Query: 121 RKIEAGCLI-REAIKGIVAKYDEEGNLQ 147
++E G + R I G + ++ + +L
Sbjct: 470 ERVEPGWEVQRHLIDGDIIIFNRQPSLH 497
>sp|Q29HB2|MMSA_DROPS Probable methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial OS=Drosophila pseudoobscura pseudoobscura
GN=GA14712 PE=3 SV=1
Length = 520
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 60 LVSAGKRQKI---IAQAVKLKEGRRFVGVGSRIDIPENYPGYF---ELLSEEGKSMRC 111
++SA RQ+I I VK EG + + G +I +P GYF +LS+ SM+C
Sbjct: 344 VISAASRQRINDLIESGVK--EGAKLILDGRKISVPGFEDGYFVGPTILSDVTPSMKC 399
>sp|Q7KW39|MMSA_DROME Probable methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial OS=Drosophila melanogaster GN=CG17896 PE=2
SV=1
Length = 520
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 60 LVSAGKRQKI---IAQAVKLKEGRRFVGVGSRIDIPENYPGYF---ELLSEEGKSMRC 111
++SA RQ+I I VK EG + + G +I +P GYF +LS+ SM+C
Sbjct: 344 VISAASRQRINDLIESGVK--EGAKLILDGRKITVPGYEDGYFVGPTILSDVTPSMKC 399
>sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DBP8 PE=3 SV=1
Length = 508
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 83 VGVGSRIDIPENYPGYFELLSEEGKSMRCCETVLEISRRKIEAGCLIREAIKGIVAKYDE 142
VG+ D+P + Y + ++ R +V I +R +E I E + G +++++E
Sbjct: 400 VGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFIGQRDVELVLAIEERVGGKMSEFEE 459
Query: 143 EG 144
EG
Sbjct: 460 EG 461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,231,353
Number of Sequences: 539616
Number of extensions: 2445809
Number of successful extensions: 5016
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5004
Number of HSP's gapped (non-prelim): 32
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)