Query psy3908
Match_columns 170
No_of_seqs 29 out of 31
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 20:28:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fy8a2 d.286.1.1 (A:245-336) 48.2 2.8 0.0002 27.3 1.0 19 148-166 62-80 (92)
2 d1kbla2 c.8.1.1 (A:377-509) Py 43.6 7.2 0.00052 27.7 2.8 30 141-170 101-133 (133)
3 d1vcta2 d.286.1.1 (A:108-201) 42.1 3.9 0.00029 26.5 1.0 18 148-165 58-75 (94)
4 d1a8pa1 b.43.4.2 (A:2-100) Fer 39.1 3.9 0.00028 26.9 0.6 35 8-47 8-42 (99)
5 d1vbga2 c.8.1.1 (A:383-517) Py 34.3 9.7 0.0007 27.1 2.2 30 141-170 98-130 (135)
6 d1krha1 b.43.4.2 (A:106-205) B 33.5 11 0.00083 23.8 2.3 58 96-164 36-94 (100)
7 d1vioa2 d.66.1.5 (A:0-57) Pseu 32.1 9.8 0.00072 22.9 1.6 26 142-167 30-55 (58)
8 d1vfsa1 b.49.2.2 (A:4-12,A:250 23.0 37 0.0027 24.0 3.7 13 153-165 89-101 (145)
9 d1o5ua_ b.82.1.8 (A:) Hypothet 22.9 47 0.0034 21.5 4.0 18 140-162 50-67 (88)
10 d1kska3 d.66.1.5 (A:1-59) Pseu 22.8 18 0.0013 21.7 1.6 28 140-167 27-54 (59)
11 d1smpi_ b.61.2.1 (I:) Metallop 21.2 28 0.0021 24.2 2.6 38 125-165 63-100 (100)
12 d1wp0a1 c.47.1.10 (A:138-297) 20.9 19 0.0014 23.1 1.5 12 97-108 1-12 (160)
13 d1avaa1 b.71.1.1 (A:347-403) P 20.4 18 0.0013 22.8 1.3 25 78-102 21-45 (57)
14 d1p9ka_ d.66.1.6 (A:) Hypothet 20.1 19 0.0013 23.2 1.3 28 139-166 47-74 (79)
No 1
>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=48.23 E-value=2.8 Score=27.26 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.2
Q ss_pred ccceeeEecCceeeecccc
Q psy3908 148 SDGARIVNIGEVLLPKSEV 166 (170)
Q Consensus 148 ~~~~~Tl~aGe~L~l~g~~ 166 (170)
+..+.+|++||+|.++|+.
T Consensus 62 p~~~~~l~~gD~L~v~G~~ 80 (92)
T d2fy8a2 62 PPRDYSFRAGDIILGIGKP 80 (92)
T ss_dssp CCTTCBCCTTCEEEEEECH
T ss_pred CCCccEeCCCCEEEEEECH
Confidence 4567999999999999963
No 2
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}
Probab=43.64 E-value=7.2 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=22.2
Q ss_pred cCCCCeeccceeeEecCceeeec---cccccCC
Q psy3908 141 DEEGNLQSDGARIVNIGEVLLPK---SEVTLGE 170 (170)
Q Consensus 141 ~ed~~~~~~~~~Tl~aGe~L~l~---g~~~~~~ 170 (170)
|+..+.....+.+|+.||++|+- |+++.||
T Consensus 101 d~~~~~~~~~t~~l~~Gd~VTvDg~~G~Vy~Ge 133 (133)
T d1kbla2 101 NEEAKTFELGGHTFAEGDYISLDGSTGKIYKGD 133 (133)
T ss_dssp ETTTTEEEETTEEEETTCEEEEETTTCEEEESC
T ss_pred cccccEEEECCEEEcCCCEEEEECCCeEEEeCC
Confidence 44444443457999999999995 7888887
No 3
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=42.11 E-value=3.9 Score=26.51 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.7
Q ss_pred ccceeeEecCceeeeccc
Q psy3908 148 SDGARIVNIGEVLLPKSE 165 (170)
Q Consensus 148 ~~~~~Tl~aGe~L~l~g~ 165 (170)
+.+++.|++||.|.++|.
T Consensus 58 p~~~~~l~~gD~l~v~G~ 75 (94)
T d1vcta2 58 PNENFKIRAGDVLIGRGT 75 (94)
T ss_dssp CCTTCBCCTTCEEEEEEC
T ss_pred CCCCCEECCCCEEEEEEC
Confidence 456799999999999986
No 4
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}
Probab=39.10 E-value=3.9 Score=26.86 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEeeeeecCCcccHHHHhhhcCCCeeEEeccCcccccCcc
Q psy3908 8 LLATAKWSDEGQYLREFVSKNSLPTVVKIIKGQYGNLGVP 47 (170)
Q Consensus 8 ~l~~~~Ws~~~~~L~~~vsk~rLP~vvri~~Gqy~~lGvp 47 (170)
+++--+|++.-+-++ +..|.-.+..+|||..++.|
T Consensus 8 V~~v~~~t~~~~~~~-----l~~~~~~~f~aGQ~~~l~~~ 42 (99)
T d1a8pa1 8 VLSVHHWNDTLFSFK-----TTRNPSLRFENGQFVMIGLE 42 (99)
T ss_dssp EEEEEEEETTEEEEE-----EECCTTCCCCTTCEEEEEEE
T ss_pred EEEEEecCCCEEEEE-----ecCCCCCccCCCcEEEEecc
Confidence 344456776644432 23344456779999999876
No 5
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}
Probab=34.33 E-value=9.7 Score=27.07 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=21.5
Q ss_pred cCCCCeeccceeeEecCceeeec---cccccCC
Q psy3908 141 DEEGNLQSDGARIVNIGEVLLPK---SEVTLGE 170 (170)
Q Consensus 141 ~ed~~~~~~~~~Tl~aGe~L~l~---g~~~~~~ 170 (170)
|++.+.....+.+|+.||.+++- |++++|+
T Consensus 98 ~~~~~~~~~~~~~l~~G~~VtvDg~~G~Vy~G~ 130 (135)
T d1vbga2 98 NDAEKLVTIGGHVLREGEWLSLNGSTGEVILGK 130 (135)
T ss_dssp EGGGTEEEETTEEEETTCEEEEETTTTEEEESC
T ss_pred chhcceeEecceEEcCCCEEEEECCCcEEEecc
Confidence 33333344567899999999996 6888775
No 6
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=33.53 E-value=11 Score=23.79 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=32.6
Q ss_pred CceeEEeccCCc-eeeeeehHHHHHhhccCcceEEeeeeeeeeeeecCCCCeeccceeeEecCceeeecc
Q psy3908 96 PGYFELLSEEGK-SMRCCETVLEISRRKIEAGCLIREAIKGIVAKYDEEGNLQSDGARIVNIGEVLLPKS 164 (170)
Q Consensus 96 ~G~F~LLsed~~-~vR~fesV~Ela~~fp~~rvlv~E~Ir~~~~~~~ed~~~~~~~~~Tl~aGe~L~l~g 164 (170)
||+|-.|.-++. -.|.|.-. +. |+++- ....|+.+ .+|.....-...|++||+|.++|
T Consensus 36 pGQ~v~l~i~g~~~~r~ys~~----~~-~~~~~-~~~~i~~~-----~~G~~s~~l~~~l~~Gd~v~v~g 94 (100)
T d1krha1 36 AGQYVNVTLPGTTETRSYSFS----SQ-PGNRL-TGFVVRNV-----PQGKMSEYLSVQAKAGDKMSFTG 94 (100)
T ss_dssp TTCEEEEECTTSSCEEEEECC----SC-TTCSE-EEEEEECC-----TTCHHHHHHHTTCCTTCEEEEEE
T ss_pred CCEEEEEEECCcceeEEeecc----CC-CccCc-eEEEEEEe-----eCCchhhhhhccCCCCCEEEEec
Confidence 799888877763 46777643 22 32331 23334322 33433211124589999999876
No 7
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=32.07 E-value=9.8 Score=22.91 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCCCeeccceeeEecCceeeeccccc
Q psy3908 142 EEGNLQSDGARIVNIGEVLLPKSEVT 167 (170)
Q Consensus 142 ed~~~~~~~~~Tl~aGe~L~l~g~~~ 167 (170)
=||.+..+..+.+..||++++-||..
T Consensus 30 Vng~~v~~~~~~v~~~d~I~~~g~~l 55 (58)
T d1vioa2 30 INGEIVKSGSVQISQEDEIYFEDELL 55 (58)
T ss_dssp ETTEECCCTTCEECTTSCEEETTEEC
T ss_pred ECCEEeCCCCCCCCCCCEEEECCEEc
Confidence 35566666678999999999999864
No 8
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=22.98 E-value=37 Score=23.99 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=10.7
Q ss_pred eEecCceeeeccc
Q psy3908 153 IVNIGEVLLPKSE 165 (170)
Q Consensus 153 Tl~aGe~L~l~g~ 165 (170)
.+..||+.++.|.
T Consensus 89 ~~~~Gd~V~l~G~ 101 (145)
T d1vfsa1 89 LAEAGDEAVILGD 101 (145)
T ss_dssp CCCTTCEEEEECC
T ss_pred cCCCCCEEEEEeC
Confidence 4678999999986
No 9
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}
Probab=22.92 E-value=47 Score=21.53 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=13.0
Q ss_pred ecCCCCeeccceeeEecCceeee
Q psy3908 140 YDEEGNLQSDGARIVNIGEVLLP 162 (170)
Q Consensus 140 ~~ed~~~~~~~~~Tl~aGe~L~l 162 (170)
.++||+ ..++.|||.+.+
T Consensus 50 ~~~~G~-----~~~~~aGD~~~~ 67 (88)
T d1o5ua_ 50 TTEDGK-----KYVIEKGDLVTF 67 (88)
T ss_dssp EETTCC-----EEEEETTCEEEE
T ss_pred EcCCCC-----EEEEeCCCEEEE
Confidence 357776 358999998764
No 10
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.81 E-value=18 Score=21.67 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=21.7
Q ss_pred ecCCCCeeccceeeEecCceeeeccccc
Q psy3908 140 YDEEGNLQSDGARIVNIGEVLLPKSEVT 167 (170)
Q Consensus 140 ~~ed~~~~~~~~~Tl~aGe~L~l~g~~~ 167 (170)
..=|++++.+.++.+.+||.+++-|+..
T Consensus 27 V~Vng~~v~~~~~~V~~~d~I~~dg~~l 54 (59)
T d1kska3 27 VTVDGEIVRNAAFKLLPEHDVAYDGNPL 54 (59)
T ss_dssp EEETTEECCCTTCEECTTCCEEETTEEE
T ss_pred EEECCEEeecCCcCcCCCCEEEECCEEe
Confidence 3446667767788899999999999854
No 11
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=21.16 E-value=28 Score=24.21 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=24.1
Q ss_pred cceEEeeeeeeeeeeecCCCCeeccceeeEecCceeeeccc
Q psy3908 125 AGCLIREAIKGIVAKYDEEGNLQSDGARIVNIGEVLLPKSE 165 (170)
Q Consensus 125 ~rvlv~E~Ir~~~~~~~ed~~~~~~~~~Tl~aGe~L~l~g~ 165 (170)
|++-++..=---..+|+-+++- |.-+++.|.+|+|..|
T Consensus 63 DGiaLt~~~Gs~i~ffsR~~eg---Y~~~l~~g~~l~L~R~ 100 (100)
T d1smpi_ 63 DGLTLTQADGSAVAFFSRNRDR---YEHKLVDGSVRTLKKK 100 (100)
T ss_dssp SEEEEECTTSCEEEEEEEETTE---EEEECTTCCEEEEEEC
T ss_pred CeEEEecCCCCeEEeeeecCcc---eeEEcCCCCEEEEecC
Confidence 5555544322233466656554 4889999999998754
No 12
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.88 E-value=19 Score=23.12 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.8
Q ss_pred ceeEEeccCCce
Q psy3908 97 GYFELLSEEGKS 108 (170)
Q Consensus 97 G~F~LLsed~~~ 108 (170)
|-|+|.+++|+.
T Consensus 1 gdF~L~d~~G~~ 12 (160)
T d1wp0a1 1 GPFSLTTHTGER 12 (160)
T ss_dssp CCCEEEETTSCE
T ss_pred CCeEEEcCCCCE
Confidence 779999999953
No 13
>d1avaa1 b.71.1.1 (A:347-403) Plant alpha-amylase {Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]}
Probab=20.36 E-value=18 Score=22.84 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=18.8
Q ss_pred cCceeccccceeeeCCCCCceeEEe
Q psy3908 78 EGRRFVGVGSRIDIPENYPGYFELL 102 (170)
Q Consensus 78 Egr~v~~IGPkI~IP~~Y~G~F~LL 102 (170)
.++-.++|||+-+.|.-=|+-|++.
T Consensus 21 d~kv~~KIGp~~~~p~~~p~~w~~a 45 (57)
T d1avaa1 21 DGKVIVKLGPRYDVGNLIPGGFKVA 45 (57)
T ss_dssp TTTEEEEESSCCCCGGGSCSSEEEE
T ss_pred CCeEEEEEcCcccCCCcCCCCcEEE
Confidence 3455678999999997666667764
No 14
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=19 Score=23.16 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=21.8
Q ss_pred eecCCCCeeccceeeEecCceeeecccc
Q psy3908 139 KYDEEGNLQSDGARIVNIGEVLLPKSEV 166 (170)
Q Consensus 139 ~~~ed~~~~~~~~~Tl~aGe~L~l~g~~ 166 (170)
+..=||++..+..+.+..||++++.|+.
T Consensus 47 ~V~VNG~~~~~p~~~V~~~d~I~vdG~~ 74 (79)
T d1p9ka_ 47 QVKVDGAVETRKRCKIVAGQTVSFAGHS 74 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEETTEE
T ss_pred CcccCCEEeccccccCCCCCEEEECCEE
Confidence 3445667776778899999999999874
Done!