RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3908
         (170 letters)



>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
           adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 26.3 bits (57), Expect = 1.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 116 LEIS----RRKIEAGCLIREAIKGIVAKYDEEGNLQSDGARIVNIGEVLLP 162
            +IS    RR +  G  IR  +  +V +Y E+ NL S  +   N G +L P
Sbjct: 215 NDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLYSSESEDRNAGVILAP 265


>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 225

 Score = 24.7 bits (54), Expect = 5.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 7   ILLATAKWSDEGQYLREFVSKNSLPTVVKIIKGQYGNLG 45
           +LL      +E   ++ F+ +N+L   V+IIK +   LG
Sbjct: 68  LLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALG 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 626,001
Number of extensions: 28717
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)