BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3910
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNVKD+AGWTPLH+A + G+ VV LLL+ ALVN G ND+PLH AA++ + KL
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 62 LIQYGADVDKRNIQGHKPLEYLD 84
L+ YGA + NI G +P++Y D
Sbjct: 95 LLSYGASRNAVNIFGLRPVDYTD 117
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G T LH A G+ V LL+ G+ NV TPLH A + +LL+Q+ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 70 DKRNIQGHKPLE 81
+ Q PL
Sbjct: 70 NTTGYQNDSPLH 81
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 49/78 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL+
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 64 QYGADVDKRNIQGHKPLE 81
+ GADV+ ++ G PL
Sbjct: 89 EAGADVNAKDKNGRTPLH 106
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL++ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 70 DKRNIQGHKPLE 81
+ ++ G PL
Sbjct: 62 NAKDKNGRTPLH 73
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 41/64 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 64 QYGA 67
+ GA
Sbjct: 122 EAGA 125
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G TPLH A G++ +V+LL+ GA VN D TPLH AA++ + KLLI
Sbjct: 31 NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 90
Query: 64 QYGADVDKRNIQGHKPLEY 82
GADV+ ++ G PL Y
Sbjct: 91 SKGADVNAKDSDGRTPLHY 109
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+ G TPLH A G++ +V+LL+ GA VN D TPLH AA++ + KLLI
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 64 QYGADVDKRNIQGHKPLE 81
GADV+ + G PL+
Sbjct: 124 SKGADVNTSDSDGRTPLD 141
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A GN+ V+ L+E GA VN D TPLH AA++ + KLLI GADV+ ++
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 76 GHKPLEY 82
G PL Y
Sbjct: 70 GRTPLHY 76
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+ G TPLH A G++ +V+LL+ GA VN D TPL LA + KLL
Sbjct: 97 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 64 QYGA 67
+ G
Sbjct: 157 KQGG 160
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ KD G PLH+A S G+ V LL++ GA+VNV L TPLH AA + + KLL+
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 64 QYGADVDKRNIQGHKPLE 81
Q+GAD K+N G+ PL+
Sbjct: 129 QHGADPTKKNRDGNTPLD 146
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPLH A SVV LL+ GA V+ PLH A +A+LL+++GA V+
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 72 RNIQGHKPLE 81
++ PL
Sbjct: 104 ADLWKFTPLH 113
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHL 49
NV D +TPLH+A + G + +LLL+ GA D +TPL L
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ KD G PLH+A S G+ V LL++ GA+VNV L TPLH AA + + KLL+
Sbjct: 71 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Query: 64 QYGADVDKRNIQGHKPLE 81
Q+GAD K+N G+ PL+
Sbjct: 131 QHGADPTKKNRDGNTPLD 148
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPLH A SVV LL+ GA V+ PLH A +A+LL+++GA V+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 72 RNIQGHKPLE 81
++ PL
Sbjct: 106 ADLWKFTPLH 115
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHL 49
NV D +TPLH+A + G + +LLL+ GA D +TPL L
Sbjct: 104 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ KD G PLH+A S G+ V LL++ GA+VNV L TPLH AA + + KLL+
Sbjct: 73 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Query: 64 QYGADVDKRNIQGHKPLE 81
Q+GAD K+N G+ PL+
Sbjct: 133 QHGADPTKKNRDGNTPLD 150
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPLH A SVV LL+ GA V+ PLH A +A+LL+++GA V+
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 72 RNIQGHKPLE 81
++ PL
Sbjct: 108 ADLWKFTPLH 117
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHL 49
NV D +TPLH+A + G + +LLL+ GA D +TPL L
Sbjct: 106 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G+TPLH A G+ +V +LL+AGA VN D TPLHLAAR+ + ++L+
Sbjct: 41 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ ++ G+ PL
Sbjct: 101 KAGADVNAKDKDGYTPL 117
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G+TPLH A G+ +V +LL+AGA VN D TPLHLAAR+ + ++L+
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQG 76
+ GADV+ ++ G
Sbjct: 134 KAGADVNAQDKFG 146
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 11 WTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVD 70
L +A G + VR+L+ GA VN D TPLHLAAR+ + ++L++ GADV+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 71 KRNIQGHKPL 80
++ G+ PL
Sbjct: 75 AKDKDGYTPL 84
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G+TPLH A G+ +V +LL+AGA VN D TPLHLAAR+ + ++L+
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ ++ G+ PL
Sbjct: 89 KAGADVNAKDKDGYTPL 105
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G+TPLH A G+ +V +LL+AGA VN D TPLHLAAR+ + ++L+
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 64 QYGADVDKRNIQGHKPLE 81
+ GADV+ ++ G P +
Sbjct: 122 KAGADVNAQDKFGKTPFD 139
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN D TPLHLAAR+ + ++L++ GADV+ ++
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 76 GHKPL 80
G+ PL
Sbjct: 68 GYTPL 72
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N KD G+TPLH A G+ +V +LL+AGA VN TP LA R+ +A++L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G+TPLH A G+ +V +LL+AGA VN D TPLHLAAR+ + ++L+
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ ++ G+ PL
Sbjct: 89 KAGADVNAKDKDGYTPL 105
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G+TPLH A G+ +V +LL+AGA VN D TPLHLAAR+ + ++L+
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 64 QYGADVDKRNIQGHKPLE 81
+ GADV+ ++ G P +
Sbjct: 122 KAGADVNAQDKFGKTPFD 139
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN D TPLHLAAR+ + ++L++ GADV+ ++
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 76 GHKPL 80
G+ PL
Sbjct: 68 GYTPL 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N KD G+TPLH A G+ +V +LL+AGA VN TP LA + +A++L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G++PLH A G +VV +L+ GA +NV +DTPLHLAA + + L+
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
QY AD++ N G+ PL Y +D + D+
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
NV + TPLH A S G+ +V+ LL+ A +N + PLH A + +A+ L+
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 64 QYGADVDKRNIQGHKPLE 81
GA V N G P++
Sbjct: 126 ANGALVSICNKYGEMPVD 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G TPLH A G++ VV+LL+ GA VN D TPLH AA + + KLLI
Sbjct: 31 NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 90
Query: 64 QYGADVDKRNIQGHKPLEY 82
GADV+ ++ G PL +
Sbjct: 91 SKGADVNAKDSDGRTPLHH 109
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+ G TPLH A G++ VV+LL+ GA VN D TPLH AA + + KLLI
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 64 QYGADVDKRNIQGHKPLE 81
GADV+ + G PL+
Sbjct: 124 SKGADVNTSDSDGRTPLD 141
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A GN+ V+ L+E GA VN D TPLH AA + + KLLI GADV+ ++
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 76 GHKPLEY 82
G PL +
Sbjct: 70 GRTPLHH 76
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+ G TPLH A G++ VV+LL+ GA VN D TPL LA + KLL
Sbjct: 97 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Query: 64 QYGA 67
+ G
Sbjct: 157 KQGG 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G++PLH A G +VV +L+ GA +NV +DTPLHLAA + + L+
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
QY AD++ N G+ PL Y +D + D+
Sbjct: 88 QYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
NV + TPLH A S G+ +V+ LL+ A +N + PLH A + +A+ L+
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 64 QYGADVDKRNIQGHKPLE 81
GA V N G P++
Sbjct: 121 ANGALVSICNKYGEMPVD 138
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 65.9 bits (159), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL++ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 70 DKRNIQGHKPL 80
+ ++ G PL
Sbjct: 62 NAKDKNGRTPL 72
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 41/64 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL+
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 64 QYGA 67
+ GA
Sbjct: 89 EAGA 92
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN KD+ G TPLH A G++ VV+LLL GA N D TPLHLAA + + KL
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+ GAD + + G PL+
Sbjct: 122 LLSQGADPNTSDSDGRTPLD 141
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G TPLH A G++ VV+LLL GA N D TPLHLAA + + KLL+
Sbjct: 31 NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 90
Query: 64 QYGADVDKRNIQGHKPL 80
GAD + ++ G PL
Sbjct: 91 SQGADPNAKDSDGKTPL 107
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A GN+ V+ LLE GA VN D TPLHLAA + + KLL+ GAD + ++
Sbjct: 10 EAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 76 GHKPL 80
G PL
Sbjct: 70 GKTPL 74
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN KD+ G TPLH A G++ VV+LLL GA N D TPL LA + KL
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 62 LIQYGA 67
L + G
Sbjct: 155 LEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN D+ G TPLH A G++ +V+LLL GA N D TPLH AA + + KL
Sbjct: 29 DPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 88
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ GAD + ++ G PL Y
Sbjct: 89 LLSKGADPNAKDSDGRTPLHY 109
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN KD+ G TPLH A G++ +V+LLL GA N D TPLH AA + + KL
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+ GAD + + G PL+
Sbjct: 122 LLSKGADPNTSDSDGRTPLD 141
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN KD+ G TPLH A G++ +V+LLL GA N D TPL LA + KL
Sbjct: 95 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 62 LIQYGA 67
L + G
Sbjct: 155 LEKQGG 160
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A GN+ V+ LLE GA N D TPLH AA + + KLL+ GAD + ++
Sbjct: 10 EAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 76 GHKPLEY 82
G PL Y
Sbjct: 70 GRTPLHY 76
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N DN G+TPLH A S G+ +V +LL+ GA VN L TPLHLAA + ++L+
Sbjct: 41 NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
++GADV+ + GH PL
Sbjct: 101 KHGADVNAYDNDGHTPL 117
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A + G+ +V +LL+ GA VN D TPLHLAA+ + ++L+
Sbjct: 74 NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQG 76
++GADV+ ++ G
Sbjct: 134 KHGADVNAQDKFG 146
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN D TPLHLAA + + ++L++ GADV+ ++
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GITPL 84
>pdb|3FA2|A Chain A, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
pdb|3FA2|B Chain B, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
Length = 218
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 173 ATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENL 232
+T + IL+G + + W+ L KV EE Y + + RSR N+E L
Sbjct: 57 STLKCMLGILNGCWILKFEWVKACLR-RKVCEQEE-------KYEIPEGPRRSRLNREQL 108
Query: 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES-MNLSESSVMYHV 291
LP LF+G YL W T +++ + GG +L+R+P P+S + + ++V YH
Sbjct: 109 LPKLFDGCYFYL---WGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHA 165
Query: 292 NRPQHRLYNLSQAIVYSE--EALPRRLYNMEHVKALGLSWVRACVEQFEIV 340
RP +Q I+Y + P R+ + KA SW CV FE++
Sbjct: 166 -RPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPS-SWFIDCVMSFELL 214
>pdb|2R1Z|A Chain A, Crystal Structure Of The Bard1 Brct Repeat
pdb|2R1Z|B Chain B, Crystal Structure Of The Bard1 Brct Repeat
Length = 209
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 173 ATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENL 232
+T + IL+G + + W+ L KV EE Y + + RSR N+E L
Sbjct: 48 STLKCMLGILNGCWILKFEWVKACLR-RKVCEQEE-------KYEIPEGPRRSRLNREQL 99
Query: 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES-MNLSESSVMYHV 291
LP LF+G YL W T +++ + GG +L+R+P P+S + + ++V YH
Sbjct: 100 LPKLFDGCYFYL---WGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHA 156
Query: 292 NRPQHRLYNLSQAIVYSE--EALPRRLYNMEHVKALGLSWVRACVEQFEIV 340
RP +Q I+Y + P R+ + KA SW CV FE++
Sbjct: 157 -RPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPS-SWFIDCVMSFELL 205
>pdb|2NTE|A Chain A, Crystal Structure Of The Bard1 Brct Domains
pdb|2NTE|B Chain B, Crystal Structure Of The Bard1 Brct Domains
Length = 210
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 173 ATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENL 232
+T + IL+G + + W+ L KV EE Y + + RSR N+E L
Sbjct: 49 STLKCMLGILNGCWILKFEWVKACLR-RKVCEQEE-------KYEIPEGPRRSRLNREQL 100
Query: 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES-MNLSESSVMYHV 291
LP LF+G YL W T +++ + GG +L+R+P P+S + + ++V YH
Sbjct: 101 LPKLFDGCYFYL---WGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHA 157
Query: 292 NRPQHRLYNLSQAIVYSE--EALPRRLYNMEHVKALGLSWVRACVEQFEIV 340
RP +Q I+Y + P R+ + KA SW CV FE++
Sbjct: 158 -RPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPS-SWFIDCVMSFELL 206
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+AGW+PLH A S G + +V+ LL GA VN + TPLH AA R +A +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 64 QYGADVDKRN 73
+ GA+ D ++
Sbjct: 127 EGGANPDAKD 136
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP+ KD+ T +H A + GN ++ +LL A N+ + +TPLHLA + R AKL
Sbjct: 131 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 190
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+ GA + N + PL+
Sbjct: 191 LVSQGASIYIENKEEKTPLQ 210
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
T LH A S G+ +V LL+ G VN +PLH+AA R + K L+ GA V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 72 RNIQGHKPLEYLDVISRDDI 91
N G PL Y +R +I
Sbjct: 102 VNQNGCTPLHYAASKNRHEI 121
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
N++D G TPLH A +LL+ GA + + + TPL +A
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDI 91
D+ T LH A + + L+Q G V+ ++ G PL RD+I
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+AGW+PLH A S G + +V+ LL GA VN + TPLH AA R +A +L+
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Query: 64 QYGADVDKRN 73
+ GA+ D ++
Sbjct: 128 EGGANPDAKD 137
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP+ KD+ T +H A + GN ++ +LL A N+ + +TPLHLA + R AKL
Sbjct: 132 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 191
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+ GA + N + PL+
Sbjct: 192 LVSQGASIYIENKEEKTPLQ 211
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
T LH A S G+ +V LL+ G VN +PLH+AA R + K L+ GA V+
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 72 RNIQGHKPLEYLDVISRDDI 91
N G PL Y +R +I
Sbjct: 103 VNQNGCTPLHYAASKNRHEI 122
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
N++D G TPLH A +LL+ GA + + + TPL +A
Sbjct: 167 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDI 91
D+ T LH A + + L+Q G V+ ++ G PL RD+I
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 61.6 bits (148), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G TPLH+A G+ V+ LL GA VN D +TPLHLAA++ + KLL+ GADV
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 70 DKRNIQGHKP 79
+ R+ G+ P
Sbjct: 69 NARSKDGNTP 78
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N + G TPLH A G+ +V+LLL GA VN D +TP HLA ++ + KLL
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Query: 64 QYGADVDKRN 73
GADV+ R+
Sbjct: 96 AKGADVNARS 105
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
D +TPLH AA++ K L+ GADV+ R+ G+ PL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL 46
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D +GWTPLH A G+ +V +LL+ GA VN TPLHLAA D + ++L+
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
+YGADV+ ++ G + IS D+ D+
Sbjct: 134 KYGADVNAQDKFGKTAFD----ISIDNGNEDL 161
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH V+ G+ ++ +LL+ A VN TPLHLAA + ++L+
Sbjct: 41 NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+YGADV+ + QG+ PL
Sbjct: 101 KYGADVNAMDYQGYTPL 117
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN TPLHL + + ++L++Y ADV+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 73 NIQGHKPL 80
+ G PL
Sbjct: 77 DKSGWTPL 84
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D G+TPLH A G+ +V +LL+ GA VN T ++ + LA++L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+AGW+PLH A S G + +V+ LL GA VN + TPLH AA R +A +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 64 QYGADVDKRN 73
+ GA+ D ++
Sbjct: 127 EGGANPDAKD 136
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP+ KD+ T +H A + GN +V +LL A N+ + +TPLHLA + R AK
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+ GA + N + PL+
Sbjct: 191 LVTQGASIYIENKEEKTPLQ 210
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
D T LH A S G+ +V LL+ G VN +PLH+AA R + K L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 67 ADVDKRNIQGHKPLEYLDVISRDDI 91
A V+ N G PL Y +R +I
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEI 121
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N + G TPLH A S + +LLE GA + + T +H AA + +L+
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 64 QYGADVDKRNIQGHKPL 80
Y A + ++ +G+ PL
Sbjct: 160 FYKASTNIQDTEGNTPL 176
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
N++D G TPLH A + L+ GA + + + TPL +A
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+AGW+PLH A S G + +V+ LL GA VN + TPLH AA R +A +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 64 QYGADVDKRN 73
+ GA+ D ++
Sbjct: 127 EGGANPDAKD 136
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP+ KD+ T +H A + GN +V +LL A N+ + +TPLHLA + R AK
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+ GA + N + PL+
Sbjct: 191 LVTQGASIYIENKEEKTPLQ 210
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
D T LH A S G+ +V LL+ G VN +PLH+AA + K L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 67 ADVDKRNIQGHKPLEYLDVISRDDI 91
A V+ N G PL Y +R +I
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEI 121
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N + G TPLH A S + +LLE GA + + T +H AA + +L+
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 64 QYGADVDKRNIQGHKPL 80
Y A + ++ +G+ PL
Sbjct: 160 FYKASTNIQDTEGNTPL 176
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
N++D G TPLH A + L+ GA + + + TPL +A
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G TPLH A IG+ +V +LL+ GA VN D TPLHLAA + + ++L+
Sbjct: 41 NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+YGADV+ ++ G PL
Sbjct: 101 KYGADVNAQDAYGLTPL 117
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D GWTPLH A G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 74 NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQG 76
++GADV+ ++ G
Sbjct: 134 KHGADVNAQDKFG 146
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA P + ++L+++GADV+ R+
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GWTPL 84
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D GWTPLH A G+ +V +LL+ GA VN TPLHLAAR + ++L+
Sbjct: 41 NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ + G PL
Sbjct: 101 KNGADVNASDSHGFTPL 117
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD+ G TPLH A G+ +V +LL+ GA VN TPLHLAA+ + ++L+
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLE 81
+ GADV+ ++ G +
Sbjct: 134 KNGADVNAQDKFGKTAFD 151
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L++ GADV+ ++
Sbjct: 20 EAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GVTPL 84
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D+ G+TPLH A G+ +V +LL+ GA VN T ++ + LA++L
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D+ G TPLH A ++G+ +V +LL GA VN + TPLHLAA + ++
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++YGADV+ ++ G PL
Sbjct: 87 LLKYGADVNAKDATGITPL 105
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A S+G+ +V +LL+ GA VN TPL+LAA + ++L+
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDI 91
++GADV+ ++ G + I +D+
Sbjct: 122 KHGADVNAQDKFGKTAFDISIDIGNEDL 149
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA N TPLH+AA + ++L++ GADV+ +
Sbjct: 8 EAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 76 GHKPLE 81
G PL
Sbjct: 68 GTTPLH 73
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D G TPLH A +G+ +V +LL+ GA VN TPLHLAA+ + ++L+
Sbjct: 41 NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+YGADV+ + G PL
Sbjct: 101 KYGADVNADDTIGSTPL 117
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D +G TPLH A G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 74 NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 134 KYGADVNAQDKFGKTAFD 151
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
L +A G + VR+L+ GA VN DTPLHLAAR + ++L++ GADV+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 74 IQGHKPL 80
G PL
Sbjct: 78 FSGSTPL 84
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN G TPLH AV N +V+LLL G + P + TPLH+AA+ + +A+
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L+QYG + ++QG PL
Sbjct: 231 LLQYGGSANAESVQGVTPLH 250
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV + TPLH A G+ V + LL+ A VN D+ TPLH AAR + KL
Sbjct: 39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L++ A+ + GH PL
Sbjct: 99 LLENNANPNLATTAGHTPLH 118
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N+ + +G TPLH G+ V +L++ G +V+ TPLH+A+ L K
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 62 LIQYGADVDKRNIQGHKPLEYLDVISRDDIKT 93
L+Q+ ADV+ + G+ PL DI T
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPLH A +G+ +V+ LL+ GA NV + +TPLH+AAR +AK L+Q A V+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 72 RNIQGHKPLEYLDVISRDDI 91
+ PL I ++
Sbjct: 76 KAKDDQTPLHCAARIGHTNM 95
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N + G TPLH A G+ +V LLL A N+ TPLHL A++ +A +LI
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 64 QYGADVDKRNIQGHKPLE 81
++G VD G+ PL
Sbjct: 299 KHGVMVDATTRMGYTPLH 316
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G+TPLH A V R LL+ G N + TPLHLAA++ + LL+ A+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 70 DKRNIQGHKPLE 81
+ N G PL
Sbjct: 272 NLGNKSGLTPLH 283
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G+TPLH A GN +V+ LL+ A VN +PLH AA+ + LL++ GA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 70 DKRNIQGHKPL---EYLDVISRDDI 91
++ + G PL + L IS D+
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDV 395
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARD 53
+N KD+ TPLH A IG+ ++V+LLLE A N+ TPLH+AAR+
Sbjct: 73 VNAKAKDD--QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NPN+ AG TPLH A G+ V LLE A TPLH+AA+ + +A+L
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L++ A + G PL
Sbjct: 165 LLERDAHPNAAGKNGLTPLH 184
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
N K G++PLH A G+ +V LLL+ GA N D TPL +A R
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N DN G TPLH A G+ +V +LL+ GA V+ + TPLHLAA + ++L+
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+YGADV+ ++ G PL
Sbjct: 101 KYGADVNAFDMTGSTPL 117
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ D G+TPLH A G+ +V +LL+ GA VN + TPLHLAA + + ++L+
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 134 KYGADVNAQDKFGKTAFD 151
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L+++GADVD ++
Sbjct: 20 EAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GFTPL 84
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D +GWTPLH A G+ +V +LL+ GA VN TPL LAA + ++L+
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ +++GH PL
Sbjct: 101 KNGADVNANDMEGHTPL 117
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+AG TPL A G+ +V +LL+ GA VN ++ TPLHLAA + ++L+
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
+ GADV+ ++ G + IS D+ D+
Sbjct: 134 KNGADVNAQDKFGKTAFD----ISIDNGNEDL 161
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + + ++L++ GADV+ +
Sbjct: 20 EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GMTPL 84
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N DN G TPLH A G+ +V +LL+ GA VN + TPLHLAA D + ++L+
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
+YGADV+ ++ G + IS D+ D+
Sbjct: 134 KYGADVNAQDKFGKTAFD----ISIDNGNEDL 161
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A G+ +V +LL+ GA VN TPLHLAA + + ++L+
Sbjct: 41 NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
++GADV+ ++ +G PL
Sbjct: 101 KHGADVNAKDYEGFTPL 117
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA+ + ++L++YGADV+ +
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GATPL 84
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N KD G+TPLH A G+ +V +LL+ GA VN T ++ + LA++L
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV+D +G +P+HDA G +++L+E GA VNVP P+HLA ++ A+
Sbjct: 66 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 125
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L +D+ +R+ +G PLE
Sbjct: 126 LAAE-SDLHRRDARGLTPLE 144
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
++P+ + G T L + G+ ++ LL+ GA NV +P+H AAR K
Sbjct: 33 VHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK 91
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
+L+++GADV+ + G P+
Sbjct: 92 VLVEHGADVNVPDGTGALPIH 112
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV+D +G +P+HDA G +++L+E GA VNVP P+HLA ++ A+
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L +D+ +R+ +G PLE
Sbjct: 120 LAAE-SDLHRRDARGLTPLE 138
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
++P+ + G T L + G+ ++ LL+ GA NV +P+H AAR K
Sbjct: 27 VHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK 85
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
+L+++GADV+ + G P+
Sbjct: 86 VLVEHGADVNVPDGTGALPIH 106
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 39/73 (53%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ KD G PLH+A S G+ V LLL+ GA VN L TPLH AA R + LL+
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Query: 64 QYGADVDKRNIQG 76
+GAD N G
Sbjct: 145 SHGADPTLVNCHG 157
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+N + D TPLH A +V+LLL+ GA V+ PLH A + +
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
LL+++GA V+ ++ PL
Sbjct: 109 LLLKHGACVNAMDLWQFTPLH 129
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N K+ TPLH A + V+ +L + GA +N T LH AA +L
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298
Query: 62 LIQYGADVDKRNIQG 76
L+ YG+D ++QG
Sbjct: 299 LLSYGSDPSIISLQG 313
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDN--DTPLHLAARDVRPALAKLLIQYGADVDKRN 73
+A GNE + LL VN D TPLHLAA R + +LL+Q+GADV ++
Sbjct: 30 EAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88
Query: 74 IQGHKPLE 81
G PL
Sbjct: 89 KGGLVPLH 96
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 12 TPLHDAVSI---GNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
T LH AV+ + V LLL GA VN D TPLH+AA + ++L ++GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 69 VDKRNIQGHKPLE 81
++ + G L
Sbjct: 273 MNALDSLGQTALH 285
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G T LH A G+ RLLL G+ ++ L T + V+ L++
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTP 333
Query: 64 QYGADVDKRNIQGHK 78
+DVD R ++ K
Sbjct: 334 MRTSDVDYRLLEASK 348
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ GWTPLH A G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 41 NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
+ GADV+ + G PL
Sbjct: 101 KNGADVNANDHNGFTPLH 118
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G TPLH A G+ VV +LL+ GA VN + TPLHLAA + ++L+
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
++GADV+ ++ G + IS D+ D+
Sbjct: 134 KHGADVNAQDKFGKTAFD----ISIDNGNEDL 161
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D+ G+TPLH A +IG+ +V +LL+ GA VN T ++ + LA++L
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L++ GADV+ +
Sbjct: 20 EAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 76 GHKPLE 81
G PL
Sbjct: 80 GVTPLH 85
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D +G TPLH A + G+ +V +LL+ GA VN + TPLHLAA + ++L+
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDI 91
++GADV+ + G PL ++ +I
Sbjct: 101 KHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A IG+ +V +LL+ GA VN DTPLHLAA + ++L+
Sbjct: 74 NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 64 QYGADVDKRN 73
++GADV+ ++
Sbjct: 134 KHGADVNAQD 143
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L+++GADV+ +I
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 76 GHKPLEYLDVISRDDI 91
G PL +I +I
Sbjct: 80 GSTPLHLAALIGHLEI 95
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D GWTPLH A G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 41 NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
+ GADV+ ++ G PL
Sbjct: 101 KNGADVNAKDDNGITPLH 118
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A G+ +V +LL+ GA VN + TPLHLAA + ++L+
Sbjct: 74 NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 134 KYGADVNAQDKFGKTAFD 151
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN + TPLHLAA + ++L++ GADV+ +
Sbjct: 20 EAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 76 GHKPLE 81
G PL
Sbjct: 80 GSTPLH 85
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N KD+ G TPLH A + G+ +V +LL+ GA VN T ++ + LA++L
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D++G TPLH A G+ +V +LL+ GA VN DTPLHLAA + ++L+
Sbjct: 41 NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ + G PL
Sbjct: 101 KNGADVNATDTYGFTPL 117
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 74 NAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 134 KYGADVNAQDKFGKTAFD 151
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L+++GADV+ +
Sbjct: 20 EAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GDTPL 84
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D +G TPLH A + G+ +V +LL+ GA VN + TPLHLAA + ++L+
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDI 91
++GADV+ + G PL ++ +I
Sbjct: 101 KHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A IG+ +V +LL+ GA VN DTPLHLAA + ++L+
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 64 QYGADVDKRN 73
++GADV+ ++
Sbjct: 134 KHGADVNAQD 143
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L+++GADV+ +I
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 76 GHKPLEYLDVISRDDI 91
G PL +I +I
Sbjct: 80 GSTPLHLAALIGHLEI 95
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPL+ A + V+ LLE+GA VN G D+PLH AR LA LL+ +GAD
Sbjct: 136 TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 72 RNIQGHKPLE 81
+N +G +P+E
Sbjct: 195 KNAEGKRPVE 204
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 11 WTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVD 70
W+P+H+A G++ +R L+ G VN+ D+ +PLH A + K+L+++GA V+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 71 KRNIQGHKPL 80
H PL
Sbjct: 64 GVTADWHTPL 73
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 8 NAGW-TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
A W TPL +A G+ V LLL+ GA V P D +P+H AAR LI YG
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 67 ADVDKR 72
++D +
Sbjct: 125 GNIDHK 130
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
+PLH+A G+ S V++LL+ GA VN D TPL A LL+Q+GA V
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
+P+H+A G+ V L+ G ++ TPL+LA + + A K L++ GADV++
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Query: 72 RNIQ 75
Q
Sbjct: 163 GKGQ 166
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G TPLH A + G +V +LL+ GA VN TPLHLAA D + ++L+
Sbjct: 33 NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 64 QYGADVDKRNIQGHKPL 80
++GADV+ + G PL
Sbjct: 93 KHGADVNAYDRAGWTPL 109
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+AG TPLH A G+ +V +LL+ GA VN TPLHLAA + + ++L+
Sbjct: 66 NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 64 QYGADVDKRNIQG 76
++GADV+ ++ G
Sbjct: 126 KHGADVNAQDALG 138
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
L +A + G + VR+L+ GA VN + TPLHLAA + + + ++L++ GADV+ +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 74 IQGHKPL 80
G PL
Sbjct: 70 SAGITPL 76
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+AG TPLH A G+ +V +LL+ GA VN + TPLHLAA + ++L+
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 101 EYGADVNAQDKFGKTAFD 118
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN TPLHLAA+ + ++L+++GADV+
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 73 NIQGHKPL 80
+I G PL
Sbjct: 77 DIWGRTPL 84
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D G TPLH A ++G+ +V +LLE GA VN T ++ + LA++L
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N KD +G TPL ++ G + LLE GA VN L+ +TPL +A++ R + K
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 62 LIQYGADVDKRNIQG 76
L++ GAD+ R++ G
Sbjct: 153 LLELGADISARDLTG 167
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
KD G T L AV + LL G+ VN TPL + ++ L+++
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 66 GADVDKRNIQGHKPL 80
GA+V+ RN++G PL
Sbjct: 124 GANVNDRNLEGETPL 138
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+AG TPLH A G+ +V +LL+ GA VN + TPLHLAA + ++L+
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 101 EYGADVNAQDKFGKTAFD 118
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN TPLHLAA+ + ++L+++GADV+ R
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 73 NIQGHKPL 80
+I G PL
Sbjct: 77 DIWGRTPL 84
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N +D G TPLH A ++G+ +V +LLE GA VN T ++ + LA++L
Sbjct: 74 NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+AG TPLH A G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
+YGADV+ ++ G +
Sbjct: 101 EYGADVNAQDKFGKTAFD 118
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN TPLHLAA+ + ++L+++GADV+
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 73 NIQGHKPL 80
+ G PL
Sbjct: 77 DSWGRTPL 84
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D+ G TPLH A ++G+ +V +LLE GA VN T ++ + LA++L
Sbjct: 74 NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPL+ A + V+ LLE+GA VN G D+PLH R LA LL+ +GAD
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Query: 72 RNIQGHKPLEYL 83
+N +G +P+E +
Sbjct: 251 KNAEGKRPVELV 262
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 11 WTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVD 70
W+P+H+A G++ +R L+ G VN+ D+ +PLH A + K+L+++GA V+
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 71 KRNIQGHKPL 80
H PL
Sbjct: 120 GVTADWHTPL 129
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 9 AGW-TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA 67
A W TPL +A G+ V LLL+ GA V P D +P+H AAR LI YG
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 68 DVDKR 72
++D +
Sbjct: 182 NIDHK 186
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
+PLH+A G+ S V++LL+ GA VN D TPL A LL+Q+GA V
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
+P+H+A G+ V L+ G ++ TPL+LA + + A K L++ GADV++
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Query: 72 RNIQ 75
Q
Sbjct: 219 GKGQ 222
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A +G+ +V +LL+ GA VN G TPLHLAA + ++L+
Sbjct: 41 NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
++GADV+ ++ G +
Sbjct: 101 KHGADVNAQDKFGKTAFD 118
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L GA VN TPLHLAA + ++L++ GADV+
Sbjct: 20 EAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GRTPL 84
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N DN G TPLH A G+ +V +LL+ GA V+ + TPLHLAA + ++L+
Sbjct: 41 NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE------YLDVI 86
+ GADV+ + G PL YL+++
Sbjct: 101 KNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ D G+TPLH A G+ +V +LL+ GA VN D TPLHLAA+ + ++L+
Sbjct: 74 DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 64 QYGADVDKRNIQGHKPLE 81
++GADV+ ++ G +
Sbjct: 134 KHGADVNAQDKFGKTAFD 151
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN TPLHLAA + ++L+++GADVD ++
Sbjct: 20 EAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 76 GHKPL 80
G+ PL
Sbjct: 80 GYTPL 84
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP++KD G+ +HDA G ++ LLE A VN+ + + PLHLAA++ + +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 62 LIQYGA-DVDKRNIQGHKPLEYLDVISRDDI 91
L+++ A +V RN +G + + R+++
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP++KD G+ +HDA G ++ LLE A VN+ + + PLHLAA++ + +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 62 LIQYGA-DVDKRNIQGHKPLEYLDVISRDDI 91
L+++ A +V RN +G + + R+++
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP++KD G+ +HDA G ++ LLE A VN+ + + PLHLAA++ + +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 62 LIQYGA-DVDKRNIQGHKPLEYLDVISRDDI 91
L+++ A +V RN +G + + R+++
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|1L0B|A Chain A, Crystal Structure Of Rat Brca1 Tandem-Brct Region
Length = 229
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 161 LLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAK 220
+++ E C T I G V Y+W+ +S++ K+L V EFE+ G V +
Sbjct: 45 VIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQERKLLSVHEFEVKGDV---VTG 101
Query: 221 PFH----RSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREP 275
H RSRE++E LF GLQ+Y +P+ + + +++ + + GA+++ P
Sbjct: 102 SNHQGPRRSRESQEK----LFEGLQIYCCEPF---TNMPKDELERMLQLCGASVVKELP 153
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP++KD G+ +HDA G ++ LLE A VN+ + + PLHLAA++ + +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 62 LIQYGA-DVDKRNIQGHKPLEYLDVISRDDI 91
L+++ A +V RN +G + + R+++
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV+D +G +P+HDA G +++L+E GA VN P+HLA R+ ++
Sbjct: 66 SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF 125
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L +D+ R+ G PLE
Sbjct: 126 LAPE-SDLHHRDASGLTPLE 144
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
++P+ + G T L + G+ +V LL+ GA NV +P+H AAR K
Sbjct: 33 VHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK 91
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
+L+++GADV+ + G P+
Sbjct: 92 VLVEHGADVNALDSTGSLPIH 112
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV+D +G +P+HDA G +++L+E GA VN P+HLA R+ ++
Sbjct: 68 SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF 127
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L +D+ R+ G PLE
Sbjct: 128 LAPE-SDLHHRDASGLTPLE 146
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
++P+ + G T L + G+ +V LL+ GA NV +P+H AAR K
Sbjct: 35 VHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK 93
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
+L+++GADV+ + G P+
Sbjct: 94 VLVEHGADVNALDSTGSLPIH 114
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD G TPL+ A + G+ +V +LL+ GA VN TPLHLAA +A++L+
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
++GADV+ ++ G +
Sbjct: 101 KHGADVNAQDKFGKTAFD 118
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN TPL+LA + ++L++ GADV+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 73 NIQGHKPLEYLDVISRDDI 91
+ G PL I +I
Sbjct: 77 DAIGFTPLHLAAFIGHLEI 95
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D G+TPLH A IG+ + +LL+ GA VN T ++ + LA++L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P++ ++ G T LH+AV G+ +V+ L++ G VN D TPLH AA + K
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 62 LIQYGADV 69
L++ GA V
Sbjct: 122 LVESGAAV 129
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALV 36
+N N D+ GWTPLH A S N V + L+E+GA V
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 25 VVRLLLEAGALVNVPGLDND---TPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
V R++ E V+ P L ND T LH A + K L+Q+G +V+ + G PL
Sbjct: 53 VQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P++ ++ G T LH+AV G+ +V+ L++ G VN D TPLH AA + K
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 62 LIQYGADV 69
L++ GA V
Sbjct: 122 LVESGAAV 129
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALV 36
+N N D+ GWTPLH A S N V + L+E+GA V
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 25 VVRLLLEAGALVNVPGLDND---TPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
V R++ E V+ P L ND T LH A + K L+Q+G +V+ + G PL
Sbjct: 53 VQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A + +V +LL+ GA VN D TPLHLAA + ++L+
Sbjct: 41 NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQG 76
++GADV+ ++ G
Sbjct: 101 KHGADVNAQDKFG 113
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA VN +TPLHLAA + ++L+++GADV+ +
Sbjct: 20 EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 76 GHKPL 80
G PL
Sbjct: 80 GSTPL 84
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
++ GWTPLH+AV + E +V LLL GA + + TP LAA L KL +
Sbjct: 55 EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 66 GADVDKRNIQG 76
GADV++ + G
Sbjct: 115 GADVNECDFYG 125
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 9 AGWTPLHDAVSIGNESVVRLLL-EAGALVNV-PGLDNDTPLH--LAARDVR-PALAKLLI 63
G T L DA G+ V+++LL E GA VN + + +H L++ D A+ LL+
Sbjct: 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 226
Query: 64 QYGADVDKRNIQGHKPL 80
+GADV+ R +G PL
Sbjct: 227 DHGADVNVRGERGKTPL 243
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 19 SIGNESV--VRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
++ NE V V+ LLE GA VN + TPLH A + R + +LL+++GAD R
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 76 GHKPL 80
G P
Sbjct: 92 GATPF 96
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 4 NVKDNAGWTPL-HDAVSIGN---ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALA 59
N DN G L H +S + E++ LLL+ GA VNV G TPL LA L
Sbjct: 196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 255
Query: 60 KLLIQ 64
+ L++
Sbjct: 256 QRLLE 260
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
M+ N +D+ GWTP+ A + +V+LLL G+ +N+ + + LH AA +A+
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
+L+ D+ NI G PL
Sbjct: 162 ILLAAKCDLHAVNIHGDSPLH 182
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N++DN LH A G + +LL A ++ + D+PLH+AAR+ R L +
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
Query: 64 QYGADVDKRNIQGHKPLE 81
+DV +N +G PL+
Sbjct: 198 SRDSDVTLKNKEGETPLQ 215
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
MN ++ +PLH A G+ + +L++AGA ++ D TPL AA + K
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
LI+ GA VD ++ +G L
Sbjct: 62 YLIKAGALVDPKDAEGSTCLH 82
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA-DVD 70
TPL +A + V+ L++AGALV+ + T LHLAA+ + + L+ G DV+
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 71 KRNIQGHKPL 80
++ G P+
Sbjct: 106 CQDDGGWTPM 115
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G TPLH A +G+ +V +LL+ GA VN TPLHLAA + ++L+
Sbjct: 41 NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
++GADV+ ++ G +
Sbjct: 101 KHGADVNAQDKFGKTAFD 118
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN D TPLHLAA+ + ++L++YGADV+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 73 NIQGHKPL 80
+ G PL
Sbjct: 77 DNFGITPL 84
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N +DN G TPLH A G+ +V +LL+ GA VN T ++ + LA++L
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
++ GWTPLH+AV + E +V LLL GA + + TP LAA L KL +
Sbjct: 35 EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 66 GADVDKRNIQG 76
GADV++ + G
Sbjct: 95 GADVNECDFYG 105
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 9 AGWTPLHDAVSIGNESVVRLLL-EAGALVNV-PGLDNDTPLH--LAARDVR-PALAKLLI 63
G T L DA G+ V+++LL E GA VN + + +H L++ D A+ LL+
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 64 QYGADVDKRNIQGHKPL 80
+GADV+ R +G PL
Sbjct: 207 DHGADVNVRGERGKTPL 223
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 19 SIGNESV--VRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
++ NE V V+ LLE GA VN + TPLH A + R + +LL+++GAD R
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 76 GHKPL 80
G P
Sbjct: 72 GATPF 76
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 4 NVKDNAGWTPL-HDAVSIGN---ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALA 59
N DN G L H +S + E++ LLL+ GA VNV G TPL LA L
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 60 KLLIQ 64
+ L++
Sbjct: 236 QRLLE 240
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP++KD G +HDA G ++ LLE A VN+ + + PLHLAA++ + +
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 62 LIQYGA-DVDKRNIQGHKPLEYLDVISRDDI 91
L+++ A +V RN +G + + R+++
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
TPLH A S G+ ++V +LL+ GA VN + T LH A + +LLI+YGADV
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
P D G +PLH A G+ S +LL AG + + TPLH+AA + + ++L
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 63 IQYGADVDKRNI 74
+++GADV+ +++
Sbjct: 87 LKHGADVNAKDM 98
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 16 DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ 75
+A G + VR+L+ GA L +PLHLAA+ + ++L++ G D R
Sbjct: 8 EAARAGQDDEVRILMANGAPFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 76 GHKPLE 81
PL
Sbjct: 67 DRTPLH 72
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P+ + G T LH+A+ N S+V L+ AGA VN P TPLH AA +
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105
Query: 62 LIQYGADV 69
L+Q+GA +
Sbjct: 106 LVQHGAAI 113
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
L +A G + VR+L+ GA VN D TPLHLAAR+ + ++L++ GADV+ ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N KD G+TPLH A G+ +V +LL+AGA VN T ++ + LA++L
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
NV G +PLH A G ++ LLL+ GA D PLHLA + + K L+
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 64 QYGADVDKRNIQGHKPLEY 82
A +K+++ G+ PL Y
Sbjct: 140 DSNAKPNKKDLSGNTPLIY 158
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
PN KD +G TPL A S G+ +V LLL+ GA +N +T LH A + + +LL
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 63 IQYGADV 69
+ +GA V
Sbjct: 205 LLHGASV 211
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N ++ PLH A G+ VV+ LL++ A N L +TPL A L L
Sbjct: 111 NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL 170
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+Q+GA ++ N +G+ L
Sbjct: 171 LLQHGASINASNNKGNTAL 189
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 32 AGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+G VNV D +PLH+AA R L LL+++GA+ RN PL
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPL 123
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQY 65
D G T L +G++ VRLL EAGA ++ + T LH+AA VRP + + L++
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 66 GADVDKRNIQGHKPLEYLDVISRDDIKT 93
GAD++ + +G LE ++R+ +KT
Sbjct: 133 GADIEVEDERGLTALE----LAREILKT 156
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQY 65
D G T L +G++ VRLL EAGA ++ + T LH+AA VRP + + L++
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Query: 66 GADVDKRNIQGHKPLEYLDVISRDDIKT 93
GAD++ + +G LE ++R+ +KT
Sbjct: 134 GADIEVEDERGLTALE----LAREILKT 157
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAKLLIQYGAD 68
G TPLH AV + +VRLL +AGA +N P TPLHLA ++ +LL++ GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 69 VDKRNIQGHKPL 80
R G PL
Sbjct: 218 PTARMYGGRTPL 229
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA 67
G TPLH AV SV+ LLL+AGA TPL A P LA+LL +GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+++++ G T LH A +G S V L AGA V V T LHLA R A +L+
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 64 Q 64
Q
Sbjct: 99 Q 99
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAKLLIQYGAD 68
G TPLH AV + +VRLL +AGA +N P TPLHLA ++ +LL++ GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 69 VDKRNIQGHKPL 80
R G PL
Sbjct: 218 PTARMYGGRTPL 229
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA 67
G TPLH AV SV+ LLL+AGA TPL A P LA+LL +GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+++++ G T LH A +G S V L AGA V V T LHLA R A +L+
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 64 Q 64
Q
Sbjct: 99 Q 99
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
L +A G + VR+L+ GA V + TPLHLAAR+ + KLL++ GADV+ ++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
KD G TPLH A G+ VV+LLLEAGA VN T ++ + LA++L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D G TPLH A + +V +LL+ GA VN +TPLHL A + ++L+
Sbjct: 41 NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 64 QYGADVDKRNIQGHKPLE 81
++GADV+ ++ G +
Sbjct: 101 KHGADVNAQDKFGKTAFD 118
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR 72
L +A G + VR+L+ GA VN TPLHLAA + + ++L++ GADV+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 73 NIQGHKPL 80
+ G PL
Sbjct: 77 DAIGETPL 84
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
L +A G + VR+L+ GA V + TPLHLAAR+ + KLL++ GADV ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 74 IQGHKPLEYLDVISRDDIKTDI 95
G + IS D+ D+
Sbjct: 88 KFGKTAFD----ISIDNGNEDL 105
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
KD G TPLH A G+ VV+LLLEAGA V T ++ + LA++L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAKLLIQYGAD 68
G T LH A G +V LL+ GA VN + T LHLA P L LL++ GAD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 69 VDKRNIQGHKPLE 81
V++ QG+ P +
Sbjct: 177 VNRVTYQGYSPYQ 189
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAG------ALVNVPGLDNDTPLHLAARDVR 55
+P ++D G TPLH A G + V +L ++ +++ + T LHLA+
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129
Query: 56 PALAKLLIQYGADVDKR 72
+ +LL+ GADV+ +
Sbjct: 130 LGIVELLVSLGADVNAQ 146
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 34 ALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
A +N TPLHLA +P +A+ L+ G D + R+ +G+ PL
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N ++N TPLH AV + LL AG + +TPLHLA A +L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 64 Q 64
Q
Sbjct: 99 Q 99
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G T LH A N +V+ L+E GA +N P + PLH AA +A+ LI GA V
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 70 DKRNIQGHKPLE 81
N +G PL+
Sbjct: 133 GAVNSEGDTPLD 144
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
+G T LH A + G V++LL++A VN+ D TPLH AA + ++L++ D
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 69 VDKRNIQGHKPLEYLD 84
++ N G + D
Sbjct: 258 MEAVNKVGQTAFDVAD 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHL 49
N N DN GW PLH A S G + L+ GA V + DTPL +
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 17 AVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQG 76
A S G+ V LLE GA +N +D T LH A D + K L++ GA++++ + +G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 77 HKPLE------YLDV 85
PL YLD+
Sbjct: 107 WIPLHAAASCGYLDI 121
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLE 31
N+KD GWTPLH A G E R+L+E
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAKLLIQYGAD 68
G T LH A G +V LL+ GA VN + T LHLA P L LL++ GAD
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 69 VDKRNIQGHKPLE 81
V++ QG+ P +
Sbjct: 174 VNRVTYQGYSPYQ 186
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAG------ALVNVPGLDNDTPLHLAARDVR 55
+P ++D G TPLH A G + V +L ++ +++ + T LHLA+
Sbjct: 67 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 126
Query: 56 PALAKLLIQYGADVDKR 72
+ +LL+ GADV+ +
Sbjct: 127 LGIVELLVSLGADVNAQ 143
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 34 ALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81
A +N TPLHLA +P +A+ L+ G D + R+ +G+ PL
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 80
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N ++N TPLH AV + LL AG + +TPLHLA A +L
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 64 Q 64
Q
Sbjct: 96 Q 96
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G+TPL A + G +VV LL+ GA + G ++ L LA + K+L+
Sbjct: 46 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 105
Query: 64 QYGADVDKRNIQGHKPLEY 82
G DV++ + G PL Y
Sbjct: 106 DCGVDVNEYDWNGGTPLLY 124
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
+ L A S G +V++LL+ G VN + TPL A K+L++ GAD
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G+TPL A + G +VV LL+ GA + G ++ L LA + K+L+
Sbjct: 28 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 64 QYGADVDKRNIQGHKPLEY 82
G DV++ + G PL Y
Sbjct: 88 DCGVDVNEYDWNGGTPLLY 106
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 17 AVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
A S G +V++LL+ G VN + TPL A K+L++ GAD
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G+TPL A + G +VV LL+ GA + G ++ L LA + K+L+
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 64 QYGADVDKRNIQGHKPLEY 82
G DV++ + G PL Y
Sbjct: 90 DCGVDVNEYDWNGGTPLLY 108
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 17 AVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
A S G +V++LL+ G VN + TPL A K+L++ GAD
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N++DN G TPLH AVS + V ++L+ A ++ D TPL LAAR + +
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LI ADV+ + G L +
Sbjct: 142 DLINSHADVNAVDDLGKSALHW 163
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA-ARDVRPALAKLL 62
N D G T LH A + LLEA A N+ TPLH A + D + L+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 63 IQYGADVDKRNIQGHKPL 80
D+D R G PL
Sbjct: 111 RNRATDLDARMHDGTTPL 128
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 1 MNPNVKDNAGWTPLHDA------VSIGNES--------VVRLLLEAGALVNVPGLDNDTP 46
M+ NV+ G+TPL A + GN + + + +L N +T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 47 LHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
LHLAAR R AK L++ AD + ++ G PL
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 94
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G + LH A ++ N +LL+ GA ++ +TPL LAAR+ AK+L+
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRD 89
+ A+ R+I H +D + RD
Sbjct: 211 DHFAN---RDITDH-----MDRLPRD 228
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKLLIQ 64
D++GWTP H A S+GN VV+ L + ++ + N T LHLA +++ LI+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 65 YGADVDKRNIQGHKPLE 81
GA V ++ PL
Sbjct: 129 NGASVRIKDKFNQIPLH 145
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 8 NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG- 66
N G T LH AV V + L+E GA V + N PLH AA L +LL G
Sbjct: 105 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Query: 67 ADVDKRNIQGHKPL 80
+ V+ ++ QG PL
Sbjct: 165 SAVNWQDKQGWTPL 178
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAG-ALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+KD PLH A S+G+ ++ LL G + VN TPL A + A LL+
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Query: 64 Q-YGADVDKRNIQGHK 78
+ YGA+ D + +G K
Sbjct: 195 EKYGAEYDLVDNKGAK 210
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N++DN G TPLH AVS + V ++L+ A ++ D TPL LAAR + +
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LI ADV+ + G L +
Sbjct: 142 DLINSHADVNAVDDLGKSALHW 163
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA-ARDVRPALAKLL 62
N D G T LH A + + LLEA A N+ TPLH A + D + L+
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 63 IQYGADVDKRNIQGHKPL 80
D+D R G PL
Sbjct: 111 RNRATDLDARMHDGTTPL 128
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 1 MNPNVKDNAGWTPLHDA------VSIGNES--------VVRLLLEAGALVNVPGLDNDTP 46
M+ NV+ G+TPL A + GN + + + +L N T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATA 60
Query: 47 LHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
LHLAA R AK L++ AD + ++ G PL
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPL 94
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKLLIQ 64
D++GWTP H A S+GN VV+ L + ++ + N T LHLA +++ LI+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 65 YGADVDKRNIQGHKPLE 81
GA V ++ PL
Sbjct: 129 NGASVRIKDKFNQIPLH 145
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 8 NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG- 66
N G T LH AV V + L+E GA V + N PLH AA L +LL G
Sbjct: 105 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Query: 67 ADVDKRNIQGHKPL 80
+ V+ ++ QG PL
Sbjct: 165 SAVNWQDKQGWTPL 178
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAG-ALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+KD PLH A S+G+ ++ LL G + VN TPL A + A LL+
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Query: 64 Q-YGADVDKRNIQGHK 78
+ YGA+ D + +G K
Sbjct: 195 EKYGAEYDLVDNKGAK 210
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N++DN G TPLH AVS + V ++L+ A ++ D TPL LAAR + +
Sbjct: 83 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 142
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LI ADV+ + G L +
Sbjct: 143 DLINSHADVNAVDDLGKSALHW 164
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA-ARDVRPALAKLL 62
N D G T LH A + LLEA A N+ TPLH A + D + L+
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 63 IQYGADVDKRNIQGHKPL 80
D+D R G PL
Sbjct: 112 RNRATDLDARMHDGTTPL 129
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 1 MNPNVKDNAGWTPLHDA------VSIGNES--------VVRLLLEAGALVNVPGLDNDTP 46
M+ NV+ G+TPL A + GN + + + +L N +T
Sbjct: 2 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 61
Query: 47 LHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
LHLAAR R AK L++ AD + ++ G PL
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 95
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G + LH A ++ N +LL+ GA ++ +TPL LAAR+ AK+L+
Sbjct: 152 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Query: 64 QYGADVD 70
+ A+ D
Sbjct: 212 DHFANRD 218
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKLLIQ 64
D++GWTP H A S+GN VV+ L + ++ + N T LHLA +++ LI+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 65 YGADVDKRNIQGHKPL 80
GA V ++ PL
Sbjct: 129 NGASVRIKDKFNQIPL 144
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 8 NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG- 66
N G T LH AV V + L+E GA V + N PLH AA L +LL G
Sbjct: 105 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Query: 67 ADVDKRNIQGHKPL 80
+ V+ ++ QG PL
Sbjct: 165 SAVNWQDKQGWTPL 178
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAG-ALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+KD PLH A S+G+ ++ LL G + VN TPL A + A LL+
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Query: 64 Q-YGADVDKRNIQGHK 78
+ YGA+ D + +G K
Sbjct: 195 EKYGAEYDLVDNKGAK 210
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N++DN G TPLH AVS + V ++L+ A ++ D TPL LAAR + +
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LI ADV+ + G L +
Sbjct: 110 DLINSHADVNAVDDLGKSALHW 131
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA-ARDVRPALAKLL 62
N D G T LH A + LLEA A N+ TPLH A + D + L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 63 IQYGADVDKRNIQGHKPL 80
D+D R G PL
Sbjct: 79 RNRATDLDARMHDGTTPL 96
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 28 LLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81
+ + +L N +T LHLAAR R AK L++ AD + ++ G PL
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 63
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N +DN G TPLH AV+ V ++LL A +N D TPL LAAR + +
Sbjct: 76 DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 135
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LI AD++ + G L +
Sbjct: 136 DLITADADINAADNSGKTALHW 157
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N DN+G T LH A ++ N V +LL A + ++TPL LAAR+ +K L+
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRD 89
N + +++D + RD
Sbjct: 205 D--------NFANREITDHMDRLPRD 222
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N + + G TPL A + E +V L+ A A +N T LH AA +
Sbjct: 110 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI 169
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ + A+ D ++ + PL
Sbjct: 170 LLMHHANRDAQDDKDETPL 188
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ ++DN G TPLH AVS + V ++LL A ++ D TPL LAAR + +
Sbjct: 47 DAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLE 106
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LI ADV+ + G L +
Sbjct: 107 DLINSHADVNAVDDLGKSALHW 128
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA-ARDVRPALAKLL 62
N D G T LH A + LLEA A + TPLH A + D + LL
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 63 IQYGADVDKRNIQGHKPL 80
D+D R G PL
Sbjct: 76 RNRATDLDARMHDGTTPL 93
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 28 LLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81
+ + +L N +T LHLAAR R AK L++ AD ++ G PL
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G + LH A ++ N +LL+ GA ++ +TPL LAAR+ AK+L+
Sbjct: 116 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Query: 64 QYGADVD 70
+ A+ D
Sbjct: 176 DHFANRD 182
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+DNA TPL A + + LL+ GA VN PLH A LA L ++
Sbjct: 233 QDNA--TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 66 GADVDKRNIQGHKPLEYLDVISRDDIKT 93
GAD+ R+ +G PL + DI T
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N D+AG PLH A +G+ + L L+ GA + + PL +A + L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 62 L 62
L
Sbjct: 320 L 320
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 40 GLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDI 91
G DN TPL A + L+Q GA+V++ + G PL + ++ +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
G PLH A G ++ LL GA +N P + TPL A + + KLL+ GAD
Sbjct: 34 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 69 VDKRNIQGHKPLEYLD 84
+ G LE D
Sbjct: 94 KTVKGPDGLTALEATD 109
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPL 47
N D TPL AV G+ S V+LLL GA V G D T L
Sbjct: 62 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+DNA TPL A + + LL+ GA VN PLH A LA L ++
Sbjct: 233 QDNA--TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 66 GADVDKRNIQGHKPLEYLDVISRDDIKT 93
GAD+ R+ +G PL + DI T
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N D+AG PLH A +G+ + L L+ GA + + PL +A + L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 62 L 62
L
Sbjct: 320 L 320
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 40 GLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDI 91
G DN TPL A + L+Q GA+V++ + G PL + ++ +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+DNA TPL A + + LL+ GA VN PLH A LA L ++
Sbjct: 233 QDNA--TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 66 GADVDKRNIQGHKPLEYLDVISRDDIKT 93
GAD+ R+ +G PL + DI T
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT 318
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N D+AG PLH A +G+ + L L+ GA + + PL +A + L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 62 L 62
L
Sbjct: 320 L 320
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 40 GLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVIS 87
G DN TPL A + L+Q GA+V++ + G PL + ++
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLL-EAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
G T LH A + N +V+ L+ E G+ + D TP+ LAA++ R + LIQ GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 69 VDKRNIQGH 77
V+ + H
Sbjct: 339 VEAVDATDH 347
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 26 VRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
+ + AGA VN D +TPL LA R L L + GAD
Sbjct: 149 AKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGAD 191
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
G PLH A G ++ LL GA +N P + TPL A + + KLL+ GAD
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 69 VDKRNIQGHKPLEYLD 84
+ G E D
Sbjct: 99 KTVKGPDGLTAFEATD 114
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G+TPL A + G VR LLE GA ++ + ++ L LA+ + LL+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 64 QYGADVDKRNIQGHKPLEY 82
+ D++ + G PL Y
Sbjct: 90 ERDVDINIYDWNGGTPLLY 108
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 17 AVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQG 76
A + G +V LLLE +N+ + TPL A R + L+ GAD+ G
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135
Query: 77 HKPLE 81
+ P++
Sbjct: 136 YTPMD 140
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D G+TPL A + G VR LLE GA ++ + ++ L LA+ + LL+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 64 QYGADVDKRNIQGHKPLEY 82
+ D++ + G PL Y
Sbjct: 90 ERDVDINIYDWNGGTPLLY 108
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAA-RDVRPALAKLLIQYGA 67
+G +PL AV + S+V+LLL+ GA VN + LH A+ R + P L + L++ GA
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP-LVRTLVRSGA 207
Query: 68 DVDKRNIQGHKPL 80
D +N PL
Sbjct: 208 DSSLKNCHNDTPL 220
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQYGAD 68
G T LH AV+ + V+LLLE GA ++ + + +PL A + ++ +LL+Q+GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 69 VDKRNIQGHKPLE 81
V+ + G L
Sbjct: 176 VNAQMYSGSSALH 188
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 7 DNAGWTPLHDAVSIGN----ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
D G TPLH AV GN +V L + G +++ TPLHLA P++ +LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 63 IQYGA 67
+ GA
Sbjct: 66 VTAGA 70
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
++ +N TPLH AV SVVRLL+ AGA T HLA P + L+
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 64 QYGA----DVDKRNIQG 76
A D++ RN G
Sbjct: 100 DSAAPGTLDLEARNYDG 116
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL--------DNDTPLHLAARD 53
+P D G T H A + + +R LL++ A PG D T LH+A
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAA----PGTLDLEARNYDGLTALHVAVNT 126
Query: 54 VRPALAKLLIQYGADVDKRNIQ-GHKPL 80
+LL++ GAD+D +I+ G PL
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPL 154
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
N N + +G + LH A G +VR L+ +GA ++ NDTPL +A
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
TPLH A G+ S+V L++ GA ++ + + +HLAA+ ++ LI G DVD
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 72 RNIQGHKPLEY 82
+ G PL +
Sbjct: 138 MDQNGMTPLMW 148
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
T LH AV GN +V+ LLLEAGA V+ + ++ L LA +
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLD-NDTPLHLAARDVRPALAKLLIQYGAD 68
T LH A +V+ + GA+V+ G D N TPLH A R ++ L++YGAD
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESV--VRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAK 60
++ D G TPL A + SV RLLL VN+ +T LH A +
Sbjct: 136 DMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 61 LLIQYGADVDKRNIQGHKPLE 81
LL++ GA+VD +NI+G L+
Sbjct: 195 LLLEAGANVDAQNIKGESALD 215
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
++ D + W + A G R L+EAG V P +N T LH AA + R L K I
Sbjct: 4 HIDDYSTWDIV-KATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62
Query: 64 QYGADVDK 71
GA VD+
Sbjct: 63 SKGAIVDQ 70
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
D G + + A++ N +V LL AGAL N+ L+N+ PLH AA + K+L+ G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSG 85
Query: 67 ADVDKRNIQGHKPLEY 82
D + + +G+ L Y
Sbjct: 86 LDDSQFDDKGNTALYY 101
>pdb|3PXC|X Chain X, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1699q
Length = 214
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCEQTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 28 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 87
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSP 253
FE+ G V+ + R+RE+++ +F GL++ P+ T+ P
Sbjct: 88 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF-TNKP 130
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 50 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 109
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 110 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 148
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct
Domain Of Brca1: Structure Of Brca1 Missense Variant
V1809f
Length = 214
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A Minimal
Recognition Tetrapeptide With A Free Carboxy C-Terminus
Length = 215
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 30 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 89
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 90 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 128
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C T I G V Y W+++S++ K+L +
Sbjct: 30 ITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 89
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 90 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 128
>pdb|3SHT|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|C Chain C, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHV|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
pdb|3SHV|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
Length = 206
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 162 LVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKP 221
+++G P RT NVL I G + Y W+ SLE+G + E FE+ + +P A P
Sbjct: 57 VLSGKPLRTL----NVLLGIARGCWVLSYDWVLWSLELGHWISEEPFEL--SHHFP-AAP 109
Query: 222 FHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSS 256
RS + +L G + G ++ +P SP SS
Sbjct: 110 LCRS---ECHLSAGPYRG-TLFADQPAMFVSPASS 140
>pdb|3SZM|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|C Chain C, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|D Chain D, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|E Chain E, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|F Chain F, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|G Chain G, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|H Chain H, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3T1N|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3T1N|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3U3Z|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With An H2a.X Peptide Phosphorylated
At Ser139 And Tyr142
Length = 199
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 162 LVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKP 221
+++G P RT NVL I G + Y W+ SLE+G + E FE+ + +P A P
Sbjct: 50 VLSGKPLRTL----NVLLGIARGCWVLSYDWVLWSLELGHWISEEPFEL--SHHFP-AAP 102
Query: 222 FHRS 225
RS
Sbjct: 103 LCRS 106
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 14 LHDAVSIGNES---VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVD 70
LH AV + N++ +V +++ G ++ D +T LH AA +P KLL++ A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 71 KRNIQGHKPLE 81
N G L+
Sbjct: 235 TVNEAGETALD 245
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVR-LLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D AG T L+ A G++ +V L + +N DT LH AA + +LL
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
Query: 63 IQYGADVDKRNIQ 75
+ GA D RNI+
Sbjct: 160 LAKGARTDLRNIE 172
>pdb|3PXB|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: T1700a
Length = 214
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEE 207
I ++ L+ +++ E C I G V Y W+++S++ K+L +
Sbjct: 29 ITLTNLITEETTHVVMKTDAEFVCERALKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHD 88
Query: 208 FEILG-TVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPW 248
FE+ G V+ + R+RE+++ +F GL++ P+
Sbjct: 89 FEVRGDVVNGRNHQGPKRARESQDR---KIFRGLEICCYGPF 127
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 NPNVK-DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
N N K AG T L AVS G VV+ LL A VNV D T L A +A
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 61 LLI 63
LL+
Sbjct: 234 LLL 236
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDN-------------DTPLHLAARDVRP 56
G T LH AV N ++VR LL GA V+ + + PL AA
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 57 ALAKLLIQYGADVDKRNIQGHKPLEYL 83
+ +LLI++GAD+ ++ G+ L L
Sbjct: 135 EIVRLLIEHGADIRAQDSLGNTVLHIL 161
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 14 LHDAVSIGNES---VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVD 70
LH AV + N++ +V +++ G ++ D +T LH AA +P KLL++ A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 71 KRNIQGHKPLE 81
N G L+
Sbjct: 254 TVNEAGETALD 264
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTP-LHLAARDVRPALAKLLIQY 65
D G TPL+ AV + + + L++ GA +N+ +D+P L+ A+ LA +L
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 66 GADVDKRNIQGHKPL 80
D++K N G L
Sbjct: 96 TPDLNKHNRYGGNAL 110
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 NVKDNAGWTPLHDAVSI--GNE---SVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPAL 58
+ +++ G+T L +AV + GN+ +V+LL+E GA ++ T + A + +
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Query: 59 AKLLIQY 65
+K+L QY
Sbjct: 194 SKILAQY 200
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + + G T LH N ++LLL A + + +TPL +A R +L
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256
Query: 62 LIQ 64
L Q
Sbjct: 257 LTQ 259
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 212 GTVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLS 255
G + PL F S E+KE ++ GL +G YLTKP+ + LS
Sbjct: 73 GLKNVPLILLF--SSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDT-PLHLAARDVRPALAK 60
NPN ++ G P+ + +G+ V LLL GA N T P+H AAR+
Sbjct: 37 NPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 61 LLIQYGADVDKRNIQGHKPLEYLDVISRDDI 91
+L + GA +D R+ G P++ + + D+
Sbjct: 96 VLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 35 LVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82
++N + DT L++AAR ++ L+ YGAD N G +P+++
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQ 64
G + LH A+ I E V +E G VN ++ PL+L+ R L K L+Q
Sbjct: 211 GNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELLQ 265
>pdb|1W8S|A Chain A, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|B Chain B, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|C Chain C, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|D Chain D, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|E Chain E, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|F Chain F, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|G Chain G, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|H Chain H, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|I Chain I, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|J Chain J, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
Length = 263
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 150 VSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYT 191
V +L+ N L NG P +A C+V A+ G AV YT
Sbjct: 73 VPLILKLNGKTTLYNGEP--VSVANCSVEEAVSLGASAVGYT 112
>pdb|2YCE|A Chain A, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|B Chain B, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|C Chain C, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|D Chain D, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|E Chain E, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|F Chain F, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|G Chain G, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|H Chain H, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|I Chain I, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|J Chain J, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate
Length = 263
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 150 VSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYT 191
V +L+ N L NG P +A C+V A+ G AV YT
Sbjct: 73 VPLILKLNGKTTLYNGEP--VSVANCSVEEAVSLGASAVGYT 112
>pdb|1OJX|A Chain A, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|B Chain B, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|C Chain C, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|D Chain D, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|E Chain E, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|F Chain F, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|G Chain G, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|H Chain H, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|I Chain I, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|J Chain J, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OK4|A Chain A, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|B Chain B, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|C Chain C, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|D Chain D, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|E Chain E, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|F Chain F, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|G Chain G, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|H Chain H, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|I Chain I, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|J Chain J, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK6|A Chain A, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|B Chain B, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|C Chain C, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|D Chain D, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|E Chain E, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|F Chain F, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|G Chain G, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|H Chain H, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|I Chain I, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|J Chain J, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
Length = 263
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 150 VSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYT 191
V +L+ N L NG P +A C+V A+ G AV YT
Sbjct: 73 VPLILKLNGKTTLYNGEP--VSVANCSVEEAVSLGASAVGYT 112
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N D+ G + LH A ++ N +LL+ GA ++ +TPL LAAR+ AK+L+
Sbjct: 42 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 101
Query: 64 QYGADVD 70
+ A+ D
Sbjct: 102 DHFANRD 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,705,340
Number of Sequences: 62578
Number of extensions: 369050
Number of successful extensions: 1368
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 438
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)