Query psy3910
Match_columns 348
No_of_seqs 469 out of 2180
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 20:31:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nte_A BARD-1, BRCA1-associate 100.0 1.1E-33 3.9E-38 235.5 12.8 203 120-344 5-210 (210)
2 4gpm_A Engineered protein OR26 100.0 7.7E-29 2.6E-33 199.2 14.2 136 1-161 28-163 (169)
3 4gpm_A Engineered protein OR26 99.9 5.3E-27 1.8E-31 188.5 13.5 103 1-103 61-163 (169)
4 1d9s_A Cyclin-dependent kinase 99.9 8.6E-27 2.9E-31 180.8 8.9 132 1-158 3-135 (136)
5 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.3E-25 4.5E-30 162.1 12.8 92 9-100 1-92 (93)
6 4b93_B Ankyrin repeat domain-c 99.9 1.2E-25 4.1E-30 194.7 12.6 146 1-171 77-222 (269)
7 2y1l_E Darpin-8.4; hydrolase-i 99.9 7.4E-25 2.5E-29 176.3 14.2 90 10-99 14-103 (169)
8 1ihb_A P18-INK4C(INK6), cyclin 99.9 5.4E-25 1.8E-29 175.7 11.6 134 1-159 29-162 (162)
9 1oy3_D Transcription factor in 99.9 4.8E-25 1.6E-29 191.9 10.9 168 3-172 2-230 (282)
10 3f6q_A Integrin-linked protein 99.9 5.6E-25 1.9E-29 178.7 10.6 138 2-164 31-168 (179)
11 1oy3_D Transcription factor in 99.9 4E-25 1.4E-29 192.4 10.0 165 3-169 38-260 (282)
12 3c5r_A BARD-1, BRCA1-associate 99.9 5.3E-25 1.8E-29 170.8 9.6 101 1-102 2-102 (137)
13 3v30_A DNA-binding protein rfx 99.9 8.4E-25 2.9E-29 176.4 10.8 136 3-163 29-164 (172)
14 2jab_A H10-2-G3; HER2, darpin, 99.9 3E-24 1E-28 166.3 13.4 92 9-100 13-104 (136)
15 3twr_A Tankyrase-2; ankyrin re 99.9 1.6E-24 5.4E-29 173.6 12.1 100 2-101 34-133 (165)
16 3v31_A Ankyrin repeat family A 99.9 1.4E-24 4.9E-29 174.2 11.7 91 9-99 2-92 (167)
17 2rfm_A Putative ankyrin repeat 99.9 2E-24 6.9E-29 177.4 12.8 143 3-170 28-170 (192)
18 3b7b_A Euchromatic histone-lys 99.9 2E-24 6.9E-29 183.3 13.0 167 1-169 2-179 (237)
19 1t15_A Breast cancer type 1 su 99.9 1E-24 3.4E-29 182.4 10.8 196 120-345 7-208 (214)
20 3utm_A Tankyrase-1; tankyrase, 99.9 7.5E-24 2.6E-28 190.0 17.2 168 1-170 49-283 (351)
21 2xai_A ASB-9, ankyrin repeat a 99.9 1.4E-24 4.7E-29 187.3 11.9 97 2-99 28-124 (261)
22 1yyh_A HN1;, notch 1, ankyrin 99.9 2.7E-25 9.1E-30 190.9 7.3 168 1-170 1-193 (253)
23 2rfm_A Putative ankyrin repeat 99.9 1.3E-24 4.5E-29 178.6 11.1 131 1-156 59-189 (192)
24 3aji_A 26S proteasome non-ATPa 99.9 1.7E-24 5.9E-29 183.0 11.7 167 3-171 33-209 (231)
25 3kea_A K1L; tropism, ANK repea 99.9 4.3E-25 1.5E-29 193.0 7.8 164 2-169 23-196 (285)
26 1awc_B Protein (GA binding pro 99.9 5.7E-24 2E-28 168.2 13.3 125 2-152 27-151 (153)
27 1bi7_B P16INK4A, MTS1, multipl 99.9 8.5E-25 2.9E-29 173.6 8.6 138 3-166 5-143 (156)
28 2jab_A H10-2-G3; HER2, darpin, 99.9 2.6E-24 8.8E-29 166.7 10.8 99 1-99 38-136 (136)
29 1s70_B 130 kDa myosin-binding 99.9 7.5E-25 2.6E-29 192.5 8.7 92 9-100 39-130 (299)
30 3hra_A Ankyrin repeat family p 99.9 2.6E-24 9E-29 177.9 10.9 146 2-171 31-182 (201)
31 1yyh_A HN1;, notch 1, ankyrin 99.9 1.7E-24 5.8E-29 185.8 9.8 164 5-170 52-226 (253)
32 3d9h_A CDNA FLJ77766, highly s 99.9 3.7E-24 1.3E-28 187.0 12.1 158 3-162 52-218 (285)
33 3u3z_A Microcephalin; DNA repa 99.9 2.6E-24 8.8E-29 176.2 10.3 179 120-346 14-196 (199)
34 2rfa_A Transient receptor pote 99.9 2.3E-24 7.8E-29 182.4 10.1 98 2-99 29-144 (232)
35 1d9s_A Cyclin-dependent kinase 99.9 1.6E-24 5.3E-29 168.0 8.4 99 1-100 36-135 (136)
36 2f8y_A Notch homolog 1, transl 99.9 6.6E-24 2.3E-28 178.4 12.9 166 2-169 16-193 (223)
37 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.3E-24 2.8E-28 167.7 12.3 127 2-155 28-154 (156)
38 3d9h_A CDNA FLJ77766, highly s 99.9 4.9E-24 1.7E-28 186.3 12.1 168 1-172 83-260 (285)
39 2xai_A ASB-9, ankyrin repeat a 99.9 5.4E-24 1.8E-28 183.6 11.8 152 9-162 2-162 (261)
40 1ikn_D Protein (I-kappa-B-alph 99.9 1.7E-24 5.9E-29 183.7 8.3 140 2-166 37-183 (236)
41 1l0b_A BRCA1; TANDEM-BRCT, thr 99.9 3.1E-24 1.1E-28 181.2 9.7 195 120-345 10-210 (229)
42 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-23 4.3E-28 160.2 12.0 125 9-158 1-125 (126)
43 1k1a_A B-cell lymphoma 3-encod 99.9 7.3E-24 2.5E-28 180.1 11.9 169 3-173 2-189 (241)
44 3b7b_A Euchromatic histone-lys 99.9 1.3E-23 4.3E-28 178.4 12.5 167 1-169 35-212 (237)
45 2fo1_E LIN-12 protein; beta-ba 99.9 7.2E-24 2.5E-28 192.3 11.1 168 1-170 157-349 (373)
46 3v31_A Ankyrin repeat family A 99.9 3.5E-23 1.2E-27 166.0 13.2 133 1-158 27-159 (167)
47 1k1a_A B-cell lymphoma 3-encod 99.9 2.2E-23 7.5E-28 177.2 12.6 169 1-171 37-220 (241)
48 2etb_A Transient receptor pote 99.9 1.2E-23 4.1E-28 180.8 10.4 146 1-169 30-223 (256)
49 2f8y_A Notch homolog 1, transl 99.9 1.8E-23 6E-28 175.8 11.1 157 1-159 49-216 (223)
50 3t8k_A Uncharacterized protein 99.9 2E-24 7E-29 176.3 5.1 130 2-156 29-176 (186)
51 3aaa_C Myotrophin, protein V-1 99.9 6.2E-23 2.1E-27 156.0 13.1 97 6-102 3-99 (123)
52 1n11_A Ankyrin; clathrin, BAND 99.9 3.7E-23 1.3E-27 191.6 14.1 162 1-164 5-176 (437)
53 1ihb_A P18-INK4C(INK6), cyclin 99.9 6.1E-23 2.1E-27 163.7 13.5 100 1-100 61-161 (162)
54 3aji_A 26S proteasome non-ATPa 99.9 5.8E-24 2E-28 179.7 8.0 155 1-157 64-228 (231)
55 1sw6_A Regulatory protein SWI6 99.9 4.5E-24 1.5E-28 190.2 7.4 163 1-171 121-320 (327)
56 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1E-22 3.5E-27 155.0 13.9 100 1-100 26-125 (126)
57 3jxi_A Vanilloid receptor-rela 99.9 1.1E-23 3.8E-28 181.4 9.3 142 3-162 86-253 (260)
58 3kea_A K1L; tropism, ANK repea 99.9 2.6E-24 8.8E-29 188.0 5.1 160 1-164 55-225 (285)
59 2vge_A RELA-associated inhibit 99.9 2.4E-23 8.2E-28 175.9 10.7 154 4-162 15-181 (229)
60 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.2E-23 4.2E-28 179.0 8.9 138 2-163 30-168 (239)
61 2y1l_E Darpin-8.4; hydrolase-i 99.9 8.6E-23 2.9E-27 164.2 13.4 131 1-156 38-168 (169)
62 2l6b_A NR1C; ankyrin, consensu 99.9 2.6E-23 8.8E-28 156.1 9.3 97 5-101 4-100 (115)
63 3ljn_A Hypothetical protein; a 99.9 2.9E-23 9.9E-28 187.7 11.3 170 2-173 12-250 (364)
64 2etb_A Transient receptor pote 99.9 2.9E-23 1E-27 178.3 10.8 138 5-160 85-247 (256)
65 2zgd_A 3 repeat synthetic anky 99.9 6.7E-23 2.3E-27 152.6 11.3 93 3-95 17-109 (110)
66 1n11_A Ankyrin; clathrin, BAND 99.9 5.8E-23 2E-27 190.2 13.5 164 1-166 38-211 (437)
67 1wdy_A 2-5A-dependent ribonucl 99.9 6.2E-23 2.1E-27 178.5 12.8 167 1-169 29-221 (285)
68 3ljn_A Hypothetical protein; a 99.9 1.4E-23 4.6E-28 189.9 8.8 162 1-164 44-274 (364)
69 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-23 5.2E-28 166.3 8.0 103 1-104 36-139 (156)
70 1ikn_D Protein (I-kappa-B-alph 99.9 1.9E-24 6.4E-29 183.5 2.9 150 4-172 2-156 (236)
71 1awc_B Protein (GA binding pro 99.9 1.3E-22 4.3E-27 160.4 13.0 95 1-95 58-152 (153)
72 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.3E-22 4.4E-27 160.8 13.0 97 1-98 59-155 (156)
73 2vge_A RELA-associated inhibit 99.9 2.8E-24 9.7E-29 181.6 3.2 149 1-153 45-207 (229)
74 4b93_B Ankyrin repeat domain-c 99.9 4.3E-23 1.5E-27 178.6 10.3 102 1-102 110-211 (269)
75 3ehr_A Osteoclast-stimulating 99.9 1.3E-23 4.4E-28 176.7 6.7 135 5-164 68-203 (222)
76 2pnn_A Transient receptor pote 99.9 5.3E-23 1.8E-27 178.5 10.7 137 5-159 96-258 (273)
77 2dzn_A Probable 26S proteasome 99.9 7E-23 2.4E-27 172.6 11.1 166 4-171 30-212 (228)
78 3aaa_C Myotrophin, protein V-1 99.9 3.7E-23 1.3E-27 157.2 8.5 91 1-91 31-121 (123)
79 1dcq_A PYK2-associated protein 99.9 1.2E-22 4.1E-27 176.5 12.6 99 3-101 162-263 (278)
80 3v30_A DNA-binding protein rfx 99.9 1.9E-22 6.4E-27 162.6 12.7 99 1-99 60-158 (172)
81 3utm_A Tankyrase-1; tankyrase, 99.9 1E-22 3.6E-27 182.5 12.2 170 1-172 82-318 (351)
82 1wdy_A 2-5A-dependent ribonucl 99.9 2.6E-22 9E-27 174.5 13.9 168 1-170 63-256 (285)
83 3twr_A Tankyrase-2; ankyrin re 99.9 1.2E-22 4.1E-27 162.5 10.6 98 1-99 66-163 (165)
84 2rfa_A Transient receptor pote 99.9 1.7E-22 5.7E-27 170.9 11.7 150 9-160 2-184 (232)
85 1s70_B 130 kDa myosin-binding 99.9 6.2E-23 2.1E-27 180.2 9.2 98 1-98 64-161 (299)
86 4g8k_A 2-5A-dependent ribonucl 99.9 5.4E-22 1.8E-26 177.4 14.5 165 1-167 49-273 (337)
87 3hra_A Ankyrin repeat family p 99.9 3.6E-22 1.2E-26 165.0 12.3 142 7-172 2-145 (201)
88 4hbd_A KN motif and ankyrin re 99.9 2E-22 6.9E-27 175.1 10.9 142 3-169 104-252 (276)
89 3t8k_A Uncharacterized protein 99.9 6.1E-23 2.1E-27 167.5 7.1 99 1-99 66-177 (186)
90 3c5r_A BARD-1, BRCA1-associate 99.9 3.7E-23 1.3E-27 160.3 5.6 99 1-99 34-132 (137)
91 2fo1_E LIN-12 protein; beta-ba 99.9 5.4E-23 1.8E-27 186.6 7.5 167 1-169 115-315 (373)
92 2dzn_A Probable 26S proteasome 99.9 4.4E-22 1.5E-26 167.7 12.5 138 2-139 63-215 (228)
93 2b0o_E UPLC1; arfgap, structur 99.9 3.7E-22 1.3E-26 175.4 12.4 99 1-99 175-282 (301)
94 3eu9_A Huntingtin-interacting 99.9 2.1E-21 7.1E-26 164.6 15.9 167 1-169 33-212 (240)
95 3f6q_A Integrin-linked protein 99.9 9.6E-22 3.3E-26 159.5 13.0 140 8-172 3-143 (179)
96 4hbd_A KN motif and ankyrin re 99.9 8.8E-22 3E-26 171.1 13.2 98 2-99 175-273 (276)
97 3lvq_E ARF-GAP with SH3 domain 99.9 7.5E-22 2.6E-26 185.6 12.8 104 1-104 156-268 (497)
98 3deo_A Signal recognition part 99.9 8.4E-22 2.9E-26 160.5 11.4 97 7-104 41-138 (183)
99 3ui2_A Signal recognition part 99.9 1.3E-21 4.5E-26 166.9 11.9 92 9-101 44-136 (244)
100 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5E-22 1.7E-26 169.0 9.3 101 1-101 61-164 (239)
101 3ehr_A Osteoclast-stimulating 99.9 3.1E-22 1.1E-26 168.2 7.7 104 1-104 97-201 (222)
102 3deo_A Signal recognition part 99.9 1E-21 3.5E-26 160.0 10.4 88 1-88 67-155 (183)
103 2pnn_A Transient receptor pote 99.9 7.8E-22 2.7E-26 171.1 9.3 134 5-161 49-220 (273)
104 3jue_A Arfgap with coiled-coil 99.9 2.8E-21 9.5E-26 173.8 13.0 99 1-99 224-324 (368)
105 3jxi_A Vanilloid receptor-rela 99.8 1.8E-21 6.1E-26 167.5 9.8 93 8-100 138-249 (260)
106 3ui2_A Signal recognition part 99.8 2.7E-21 9.3E-26 164.9 9.8 85 1-85 68-153 (244)
107 4g8k_A 2-5A-dependent ribonucl 99.8 6.2E-21 2.1E-25 170.5 11.7 98 2-99 160-262 (337)
108 3sqd_A PAX-interacting protein 99.8 5.3E-21 1.8E-25 158.7 8.9 194 120-345 19-216 (219)
109 3eu9_A Huntingtin-interacting 99.8 3.9E-20 1.3E-24 156.7 13.0 138 2-164 1-139 (240)
110 3al2_A DNA topoisomerase 2-bin 99.8 4.3E-21 1.5E-25 160.8 4.6 188 123-345 15-226 (235)
111 3jue_A Arfgap with coiled-coil 99.8 3.3E-20 1.1E-24 166.8 10.6 127 6-157 195-324 (368)
112 3lvq_E ARF-GAP with SH3 domain 99.8 7.5E-20 2.6E-24 172.0 11.9 130 10-164 132-270 (497)
113 2b0o_E UPLC1; arfgap, structur 99.8 1.8E-19 6.1E-24 158.2 10.3 126 9-159 150-284 (301)
114 1sw6_A Regulatory protein SWI6 99.8 3.6E-20 1.2E-24 164.9 5.7 103 1-103 155-310 (327)
115 1dcq_A PYK2-associated protein 99.8 4E-19 1.4E-23 154.3 11.8 126 10-160 130-264 (278)
116 2etx_A Mediator of DNA damage 99.8 4.4E-19 1.5E-23 146.8 11.2 160 148-344 35-198 (209)
117 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-18 5.6E-23 124.5 9.5 68 1-68 26-93 (93)
118 2l6b_A NR1C; ankyrin, consensu 99.7 5E-19 1.7E-23 132.5 4.5 80 1-80 33-112 (115)
119 2aja_A Ankyrin repeat family p 99.7 1.3E-19 4.5E-24 163.5 -3.7 95 6-101 88-188 (376)
120 2aja_A Ankyrin repeat family p 99.7 2.2E-19 7.5E-24 162.0 -3.5 94 5-99 123-222 (376)
121 3l41_A BRCT-containing protein 99.7 3E-17 1E-21 135.7 8.6 168 148-340 31-207 (220)
122 1kzy_C Tumor suppressor P53-bi 99.7 3.9E-17 1.3E-21 139.1 6.8 158 158-343 88-247 (259)
123 2zgd_A 3 repeat synthetic anky 99.6 4.8E-15 1.6E-19 109.8 8.5 62 1-62 48-109 (110)
124 3olc_X DNA topoisomerase 2-bin 99.5 1.2E-14 4.2E-19 126.0 6.0 172 120-345 111-282 (298)
125 2vxb_A DNA repair protein RHP9 99.3 1.3E-11 4.6E-16 103.7 13.5 153 157-341 68-240 (241)
126 2ebw_A DNA repair protein REV1 99.2 2.9E-11 9.8E-16 86.9 7.4 85 233-345 9-93 (97)
127 3l46_A Protein ECT2; alternati 99.2 3.7E-11 1.3E-15 87.5 6.1 95 224-345 9-103 (112)
128 4id3_A DNA repair protein REV1 99.1 7E-11 2.4E-15 84.0 6.2 85 234-345 5-89 (92)
129 3pc6_A DNA repair protein XRCC 99.1 1.1E-10 3.7E-15 83.7 5.9 89 232-347 3-93 (104)
130 1z56_C DNA ligase IV; DNA repa 99.0 2.3E-10 8E-15 98.0 4.0 137 182-345 72-259 (264)
131 2ep8_A Pescadillo homolog 1; A 99.0 4.5E-09 1.5E-13 74.9 9.5 91 233-345 9-99 (100)
132 2cou_A ECT2 protein; BRCT doma 98.9 7.6E-10 2.6E-14 80.9 5.3 85 233-344 9-93 (109)
133 3ii6_X DNA ligase 4; XRCC4, NH 98.9 5.3E-09 1.8E-13 89.1 10.7 167 148-345 40-261 (263)
134 1wf6_A Similar to S.pombe -RAD 98.9 2.3E-09 7.8E-14 81.3 6.5 84 234-344 38-123 (132)
135 3pc7_A DNA ligase 3; DNA repai 98.8 5.3E-09 1.8E-13 71.8 6.0 79 230-343 10-88 (88)
136 3l3e_A DNA topoisomerase 2-bin 98.8 3.4E-09 1.2E-13 77.3 4.7 86 232-346 11-100 (107)
137 2d8m_A DNA-repair protein XRCC 98.8 5.4E-09 1.9E-13 78.9 5.3 85 234-345 20-104 (129)
138 3ii6_X DNA ligase 4; XRCC4, NH 98.6 4.1E-08 1.4E-12 83.6 6.8 85 234-346 8-93 (263)
139 3pa6_A Microcephalin; BRCT dom 98.6 5.5E-08 1.9E-12 70.3 6.3 89 233-344 4-92 (107)
140 3olc_X DNA topoisomerase 2-bin 98.4 8.6E-07 2.9E-11 76.7 8.9 112 182-342 73-184 (298)
141 1z56_C DNA ligase IV; DNA repa 98.4 5.6E-08 1.9E-12 83.1 1.3 93 234-345 3-98 (264)
142 3ef0_A RNA polymerase II subun 98.3 6.4E-07 2.2E-11 79.6 6.9 90 231-343 277-367 (372)
143 1kzy_C Tumor suppressor P53-bi 98.3 9.3E-07 3.2E-11 75.0 6.8 94 234-344 13-132 (259)
144 3ef1_A RNA polymerase II subun 98.3 7.9E-07 2.7E-11 80.1 5.8 89 234-346 350-439 (442)
145 2vxb_A DNA repair protein RHP9 98.2 1.1E-06 3.6E-11 73.7 5.3 99 236-344 2-113 (241)
146 2jw5_A DNA polymerase lambda; 98.2 1.3E-06 4.6E-11 62.9 3.9 86 235-345 10-101 (106)
147 2l42_A DNA-binding protein RAP 98.1 4.5E-06 1.5E-10 57.0 5.5 83 234-345 9-92 (106)
148 1l7b_A DNA ligase; BRCT, autos 98.0 2.3E-05 7.7E-10 54.7 6.7 76 235-337 6-81 (92)
149 3l3e_A DNA topoisomerase 2-bin 97.9 4.5E-06 1.5E-10 60.6 3.2 75 130-213 31-105 (107)
150 3t7k_A RTT107, regulator of TY 97.9 2.1E-05 7.3E-10 64.3 7.5 168 148-340 49-242 (256)
151 2cok_A Poly [ADP-ribose] polym 97.9 1.9E-05 6.5E-10 57.2 5.9 82 235-344 9-104 (113)
152 2k6g_A Replication factor C su 97.9 3.3E-05 1.1E-09 55.7 6.8 77 235-338 31-109 (109)
153 2coe_A Deoxynucleotidyltransfe 97.8 2.7E-05 9.3E-10 56.9 5.0 86 235-346 19-112 (120)
154 2ebu_A Replication factor C su 97.7 8.8E-05 3E-09 53.6 6.6 75 235-336 21-97 (112)
155 1l0b_A BRCA1; TANDEM-BRCT, thr 97.6 3E-05 1E-09 64.5 3.9 84 236-347 4-93 (229)
156 3sqd_A PAX-interacting protein 97.6 3.7E-05 1.3E-09 63.3 4.0 81 237-345 14-95 (219)
157 3pa6_A Microcephalin; BRCT dom 97.6 7E-05 2.4E-09 53.9 4.3 61 143-213 38-98 (107)
158 1t15_A Breast cancer type 1 su 97.5 5.2E-05 1.8E-09 62.3 3.4 82 238-347 3-90 (214)
159 2coe_A Deoxynucleotidyltransfe 97.5 8.2E-05 2.8E-09 54.3 4.0 76 129-213 37-116 (120)
160 2nte_A BARD-1, BRCA1-associate 97.5 8.7E-05 3E-09 60.8 4.3 81 239-347 2-85 (210)
161 3al2_A DNA topoisomerase 2-bin 97.5 8.7E-05 3E-09 61.8 4.1 84 238-347 8-92 (235)
162 2etx_A Mediator of DNA damage 97.4 0.00012 4.1E-09 59.9 4.5 80 236-347 9-89 (209)
163 2d8m_A DNA-repair protein XRCC 97.3 0.00013 4.4E-09 54.7 3.3 71 131-213 39-109 (129)
164 2cou_A ECT2 protein; BRCT doma 97.3 5.1E-05 1.8E-09 55.0 0.9 81 121-213 19-99 (109)
165 2jw5_A DNA polymerase lambda; 97.3 0.00023 8E-09 51.1 4.2 64 142-211 39-104 (106)
166 2dun_A POL MU, DNA polymerase 97.2 0.00019 6.6E-09 52.7 2.8 86 235-346 9-105 (133)
167 4id3_A DNA repair protein REV1 97.1 0.00025 8.7E-09 49.6 3.0 56 148-211 36-92 (92)
168 3l46_A Protein ECT2; alternati 97.1 5.5E-05 1.9E-09 54.8 -0.8 81 120-212 27-107 (112)
169 2ebw_A DNA repair protein REV1 97.1 0.00029 9.9E-09 49.9 2.8 55 148-210 41-95 (97)
170 2dun_A POL MU, DNA polymerase 97.1 0.00011 3.8E-09 54.0 0.6 78 127-213 25-109 (133)
171 3u3z_A Microcephalin; DNA repa 96.9 0.00046 1.6E-08 55.9 3.3 72 253-347 21-93 (199)
172 1wf6_A Similar to S.pombe -RAD 96.9 0.00071 2.4E-08 50.8 3.5 59 148-212 69-128 (132)
173 3pc6_A DNA repair protein XRCC 96.7 0.0011 3.7E-08 47.2 3.3 61 148-213 37-97 (104)
174 3l41_A BRCT-containing protein 96.4 0.001 3.5E-08 54.6 1.6 78 237-345 6-84 (220)
175 3ef0_A RNA polymerase II subun 96.1 0.0055 1.9E-07 54.4 4.9 58 143-210 313-371 (372)
176 3ef1_A RNA polymerase II subun 95.8 0.0062 2.1E-07 54.9 4.1 56 148-210 385-441 (442)
177 1dgs_A DNA ligase; AMP complex 94.8 0.0049 1.7E-07 58.6 0.0 79 236-342 587-666 (667)
178 3pc7_A DNA ligase 3; DNA repai 93.8 0.089 3E-06 35.8 4.5 44 148-205 44-87 (88)
179 2ep8_A Pescadillo homolog 1; A 93.1 0.068 2.3E-06 37.6 3.1 44 155-208 56-99 (100)
180 2owo_A DNA ligase; protein-DNA 92.0 0.028 9.7E-07 53.5 0.0 73 236-335 597-670 (671)
181 3huf_A DNA repair and telomere 91.1 0.44 1.5E-05 40.6 6.3 107 148-272 139-253 (325)
182 2k2w_A Recombination and DNA r 70.9 6.3 0.00022 28.1 4.4 33 234-272 11-43 (118)
183 4gns_A Chitin biosynthesis pro 55.9 14 0.00048 28.1 4.2 54 158-213 203-256 (290)
184 1gp8_A Protein (scaffolding pr 44.6 17 0.00057 20.0 2.2 17 14-30 17-33 (40)
185 3zrh_A Ubiquitin thioesterase 42.1 66 0.0023 28.5 6.7 48 17-64 29-90 (454)
186 1v18_B APC protein, adenomatou 35.9 16 0.00055 20.6 1.3 17 332-348 20-36 (47)
187 3zrh_A Ubiquitin thioesterase 26.5 1.8E+02 0.0062 25.8 6.9 50 50-99 29-92 (454)
188 1dtc_A Acetyl-delta-toxin; NMR 25.4 41 0.0014 16.3 1.5 12 327-338 13-24 (26)
No 1
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=100.00 E-value=1.1e-33 Score=235.46 Aligned_cols=203 Identities=26% Similarity=0.421 Sum_probs=170.1
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+..+++....+..+..+...+ |+ .++..+.+. +||+++..+. ..++.|++.++..|+|||+.+|+.+|++.
T Consensus 5 i~~sg~~~~~~~~l~~~~~~~--G~---~~~~~~~~~-~THlV~~~~~---~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~ 75 (210)
T 2nte_A 5 LIGSGLSSEQQKMLSELAVIL--KA---KKYTEFDST-VTHVVVPGDA---VQSTLKCMLGILNGCWILKFEWVKACLRR 75 (210)
T ss_dssp EEESSCCHHHHHHHHHHHHHT--TC---EEESSCCTT-CCEEEESSSS---CCCSHHHHHHHHTTCEEEETHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHc--CC---EEeCCCCCC-CeEEEEcCCC---cchHHHHHHHHhcCCEEecHHHHHHHHHc
Confidence 344556666666666666666 77 677776666 9999998543 45789999999999999999999999999
Q ss_pred CCCccCccceecccccCCCCchhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCc
Q psy3910 200 GKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES 279 (348)
Q Consensus 200 ~~~~~e~~~ei~~~~~~~~~~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~ 279 (348)
+++++|++|++.+. | +++|.++.+..++||.|+.||+.+.|. .++++.|++||+++||+|+.+.|.+++
T Consensus 76 ~~~~~e~~y~~~~~-----~---~~~r~~~~~~~~~lF~g~~~~l~~~~~---~~~~~~l~~lI~~~GG~v~~~~p~~~~ 144 (210)
T 2nte_A 76 KVCEQEEKYEIPEG-----P---RRSRLNREQLLPKLFDGCYFYLWGTFK---HHPKDNLIKLVTAGGGQILSRKPKPDS 144 (210)
T ss_dssp TSCCCGGGTBCTTH-----H---HHHHHHHHTTCCCTTTTCEEEECSCCS---SSCHHHHHHHHHHTTCEEESSCCCGGG
T ss_pred CCcCChhhccCCCC-----C---hhhhhccccccccccCceEEEEeccCC---CCCHHHHHHHHHHCCCEEEecCCCCcc
Confidence 99999999999864 5 888888888889999999999999776 789999999999999999999999876
Q ss_pred -ccccccceeecc-CCCCccccCCceEEEeccC-CCcccccccccccccchHHHHHHHhhccccCCCC
Q psy3910 280 -MNLSESSVMYHV-NRPQHRLYNLSQAIVYSEE-ALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 280 -~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
.++..+.++||+ .+.++. .||++|||.+. +..+...++.++.+|+.+||+|||++|+|||.+|
T Consensus 145 ~~~~~~~~v~~~~~~~~~~~--~~t~~iv~~~~~~~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 145 DVTQTINTVAYHARPDSDQR--FCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp CGGGSSCCCCTTSCTTCGGG--TCCEEEEECSCSSCCCSCSEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred ccccccceeeeccCCCcccc--cceEEEEeccccccCHHHHhccCcccccHHHHHHHHHhCeeccCCC
Confidence 777777899999 455443 49999999987 4444455667889999999999999999999986
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=7.7e-29 Score=199.25 Aligned_cols=136 Identities=28% Similarity=0.379 Sum_probs=119.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
||||.+|.+|+||||+|+..++.++++.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+|||
T Consensus 28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpL 107 (169)
T 4gpm_A 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 107 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~ 160 (348)
|+|+..|+.+++++|++.+++ .+..+..+.+++..+. ..++.+++++|++.|++.
T Consensus 108 h~A~~~g~~~~v~~Ll~~gad-----------------------~~~~d~~G~TpL~~A~--~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 108 HHAAENGHKEVVKLLISKGAD-----------------------VNTSDSDGRTPLDLAR--EHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHcCCC-----------------------ccccCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCc
Confidence 999999999999999998743 3344566777777777 778889999999998865
Q ss_pred e
Q psy3910 161 L 161 (348)
Q Consensus 161 ~ 161 (348)
.
T Consensus 163 e 163 (169)
T 4gpm_A 163 E 163 (169)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=5.3e-27 Score=188.53 Aligned_cols=103 Identities=35% Similarity=0.494 Sum_probs=96.8
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|.+|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|||
T Consensus 61 ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL 140 (169)
T 4gpm_A 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Q psy3910 81 EYLDVISRDDIKTDILTALSLPR 103 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~ 103 (348)
|+|+..|+.+++++|++.|++..
T Consensus 141 ~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 141 DLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999999999996544
No 4
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=8.6e-27 Score=180.76 Aligned_cols=132 Identities=20% Similarity=0.083 Sum_probs=118.3
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ-GHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tp 79 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |.||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 5899999999999999999999999999999999999999999999999999 9999999999999999999999 9999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNV 158 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~ 158 (348)
||+|+..|+.+++++|++.+.. .+..+..+.+++..+. ..++.++++.|++.|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~-----------------------~~~~d~~g~tpl~~A~--~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGAR-----------------------LDVCDAWGRLPVDLAE--EQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCC-----------------------CCCCSSSSSCHHHHHH--HHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-----------------------CCccCCCCCCHHHHHH--HcCCHHHHHHHHHcCC
Confidence 9999999999999999998733 2334456777777777 6667788888877765
No 5
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.93 E-value=1.3e-25 Score=162.09 Aligned_cols=92 Identities=41% Similarity=0.543 Sum_probs=88.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 88 (348)
+|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q psy3910 89 DDIKTDILTALS 100 (348)
Q Consensus 89 ~~~~~~Ll~~~~ 100 (348)
.+++++|++.|+
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999874
No 6
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=194.68 Aligned_cols=146 Identities=23% Similarity=0.348 Sum_probs=127.9
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
||+|.+|.+|+||||+||..|+.++|++|++.|++++..+..|.||||+|+..++.+++++|+++|+++|.+|..|+|||
T Consensus 77 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL 156 (269)
T 4b93_B 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156 (269)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~ 160 (348)
|+|+..|+.+++++|++.|++ ++..+..+.++++.+. ..++.++++.|++.|++.
T Consensus 157 ~~A~~~g~~~~v~~Ll~~gad-----------------------vn~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~Gad~ 211 (269)
T 4b93_B 157 IYACSGGHHELVALLLQHGAS-----------------------INASNNKGNTALHEAV--IEKHVFVVELLLLHGASV 211 (269)
T ss_dssp HHHHHTTCGGGHHHHHHTTCC-----------------------TTCBCTTSCBHHHHHH--HTTCHHHHHHHHHTTCCS
T ss_pred HHHHHCCCHHHHHHHHHCCCC-----------------------CCccccCCCcHHHHHH--HcCCHHHHHHHHHCCCCC
Confidence 999999999999999988733 3344556777777777 788889999999999998
Q ss_pred eecCCCCCchH
Q psy3910 161 LLVNGTPERTC 171 (348)
Q Consensus 161 ~iv~~~~~~~~ 171 (348)
.+.+..+..++
T Consensus 212 ~~~d~~G~TpL 222 (269)
T 4b93_B 212 QVLNKRQRTAV 222 (269)
T ss_dssp CCCCTTSCCSG
T ss_pred CCcCCCCCCHH
Confidence 88776554443
No 7
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=7.4e-25 Score=176.32 Aligned_cols=90 Identities=30% Similarity=0.378 Sum_probs=46.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Q psy3910 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRD 89 (348)
Q Consensus 10 G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 89 (348)
+.|+||.||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 93 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL 93 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcC
Q psy3910 90 DIKTDILTAL 99 (348)
Q Consensus 90 ~~~~~Ll~~~ 99 (348)
+++++|++.+
T Consensus 94 ~~~~~Ll~~g 103 (169)
T 2y1l_E 94 EIVEVLLKNG 103 (169)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5555555443
No 8
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=5.4e-25 Score=175.67 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=108.8
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|.+|..|+||||+|+. |+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 29 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 107 (162)
T 1ihb_A 29 VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107 (162)
T ss_dssp CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 4678888889999998888 889999999988988888888889999999998999999999998998888888899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccc
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVN 159 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~ 159 (348)
|+|+..|+.+++++|++.+... .+..+..+.+++..+. ..++.++++.|++.|++
T Consensus 108 ~~A~~~~~~~~v~~Ll~~g~~~----------------------~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 108 HLAAKEGHLRVVEFLVKHTASN----------------------VGHRNHKGDTACDLAR--LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTC--
T ss_pred HHHHHcCCHHHHHHHHHccCCC----------------------CCCcCCCCCcHHHHHH--HcCCHHHHHHHHHhCCC
Confidence 9999889999998888887331 2234455667776666 77778888888887653
No 9
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.92 E-value=4.8e-25 Score=191.93 Aligned_cols=168 Identities=19% Similarity=0.118 Sum_probs=117.6
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL---VNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~---~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|.+|.+|+||||+||..|+.++|++|+++|++ +|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 467788888888888888888888888888877 77778888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC--------------------------------------------------------CC
Q psy3910 80 LEYLDVISRDDIKTDILTALSL--------------------------------------------------------PR 103 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~--------------------------------------------------------~~ 103 (348)
||+|+..|+.+++++|++.+.. ++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 8888888888888888875532 12
Q ss_pred CCCCCCCCCchhHHHHH-hcCCCCcccc-cCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHh
Q psy3910 104 LSAAPPPSLPNCIDIVI-YADQLDKTQT-SGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCI 172 (348)
Q Consensus 104 ~~~~~~~~~~~~~~lli-~~~~~~~~~~-~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~ 172 (348)
++.+...+...+..+++ .+...+.... .+.++++.+. ..++.++++.|++.|++....+..+..++.
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~ 230 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV--EAQAASVLELLLKAGADPTARMYGGRTPLG 230 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH--HcCCHHHHHHHHHcCCCCcccccCCCCHHH
Confidence 22222233333344333 3445554443 3666666666 667778888888887777766655444443
No 10
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=5.6e-25 Score=178.72 Aligned_cols=138 Identities=28% Similarity=0.392 Sum_probs=109.1
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
++|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 110 (179)
T 3f6q_A 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH 110 (179)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccccccee
Q psy3910 82 YLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNIL 161 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~ 161 (348)
+|+..|+.+++++|++.+.... ..+..+.+++..+. ..+...+++.+.+.|++..
T Consensus 111 ~A~~~~~~~~v~~Ll~~ga~~~-----------------------~~~~~g~tpl~~A~--~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 111 YACFWGQDQVAEDLVANGALVS-----------------------ICNKYGEMPVDKAK--APLRELLRERAEKMGQNLN 165 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSS-----------------------BCCTTSCCGGGGSC--HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHcCCHHHHHHHHHCCCCcc-----------------------hhccCCCCcHHHHH--HHHHHHHHHHHHHhhcCcc
Confidence 9999999999999998874432 22333444444333 3334456666666666665
Q ss_pred ecC
Q psy3910 162 LVN 164 (348)
Q Consensus 162 iv~ 164 (348)
..+
T Consensus 166 ~~~ 168 (179)
T 3f6q_A 166 RIP 168 (179)
T ss_dssp CBC
T ss_pred cCC
Confidence 544
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.92 E-value=4e-25 Score=192.39 Aligned_cols=165 Identities=22% Similarity=0.211 Sum_probs=137.9
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCC--------------
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD-------------- 68 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-------------- 68 (348)
+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 117 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence 789999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------C
Q psy3910 69 ---------------------------------VDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPRL----------S 105 (348)
Q Consensus 69 ---------------------------------~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~----------~ 105 (348)
++..|..|.||||+|+..|+.+++++|++.+..... +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~ 197 (282)
T 1oy3_D 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197 (282)
T ss_dssp --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence 778899999999999999999999999998854433 3
Q ss_pred CCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCc
Q psy3910 106 AAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPER 169 (348)
Q Consensus 106 ~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~ 169 (348)
.+...+...+..+++ .+...+..+..+.+++..+. ..++.++++.|++.|++....+..+..
T Consensus 198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~g~t 260 (282)
T 1oy3_D 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL--LRPNPILARLLRAHGAPEPEDGGDKLS 260 (282)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--TSSCHHHHHHHHHTTCCCCCCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHH--HcCCcHHHHHHHHcCCCcCcCCCcccc
Confidence 333334444555444 46677777777888888777 889999999999999998876644333
No 12
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=5.3e-25 Score=170.80 Aligned_cols=101 Identities=29% Similarity=0.272 Sum_probs=95.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+ .+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence 577 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCC
Q psy3910 81 EYLDVISRDDIKTDILTALSLP 102 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~ 102 (348)
|+|+..|+.+++++|++.+.+.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~ 102 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASR 102 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999987543
No 13
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=8.4e-25 Score=176.44 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=118.2
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 82 (348)
+|.+|..|+||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 108 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceee
Q psy3910 83 LDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILL 162 (348)
Q Consensus 83 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~i 162 (348)
|+..|+.+++++|++.+.+ .+..+..+.+++..+. ..++.++++.|++.++....
T Consensus 109 A~~~~~~~~v~~Ll~~ga~-----------------------~~~~~~~g~t~l~~A~--~~~~~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 109 AVRGNHVKCVEALLARGAD-----------------------LTTEADSGYTPMDLAV--ALGYRKVQQVIENHILKLFQ 163 (172)
T ss_dssp HHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HHTCHHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHcCCC-----------------------ccccCCCCCCHHHHHH--HhCcHHHHHHHHHHHHHHhc
Confidence 9999999999999998733 2334456677777777 66677888888887666554
Q ss_pred c
Q psy3910 163 V 163 (348)
Q Consensus 163 v 163 (348)
.
T Consensus 164 ~ 164 (172)
T 3v30_A 164 S 164 (172)
T ss_dssp C
T ss_pred c
Confidence 3
No 14
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=3e-24 Score=166.33 Aligned_cols=92 Identities=28% Similarity=0.338 Sum_probs=51.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 88 (348)
.|.||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCC
Q psy3910 89 DDIKTDILTALS 100 (348)
Q Consensus 89 ~~~~~~Ll~~~~ 100 (348)
.+++++|++.+.
T Consensus 93 ~~~v~~Ll~~g~ 104 (136)
T 2jab_A 93 LEIAEVLLKHGA 104 (136)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 555555555543
No 15
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=1.6e-24 Score=173.56 Aligned_cols=100 Identities=28% Similarity=0.244 Sum_probs=89.0
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
+++..|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 113 (165)
T 3twr_A 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113 (165)
T ss_dssp TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence 56777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCC
Q psy3910 82 YLDVISRDDIKTDILTALSL 101 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~ 101 (348)
+|+..|+.+++++|++.+.+
T Consensus 114 ~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 114 EAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999988743
No 16
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.91 E-value=1.4e-24 Score=174.19 Aligned_cols=91 Identities=22% Similarity=0.181 Sum_probs=51.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 88 (348)
.|.||||.||..|+.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 35555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcC
Q psy3910 89 DDIKTDILTAL 99 (348)
Q Consensus 89 ~~~~~~Ll~~~ 99 (348)
.+++++|++.+
T Consensus 82 ~~~v~~Ll~~g 92 (167)
T 3v31_A 82 TDIVKMLLDCG 92 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 55555555554
No 17
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.91 E-value=2e-24 Score=177.42 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=116.6
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 82 (348)
+|.+|..|+||||+||..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceee
Q psy3910 83 LDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILL 162 (348)
Q Consensus 83 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~i 162 (348)
|+..|+.+++++|++.+... +..+..+.++++.+. ..++.++++.|++.|++...
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~-----------------------~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~ga~~~~ 162 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANV-----------------------NDRNLEGETPLIVAS--KYGRSEIVKKLLELGADISA 162 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-----------------------SCCCTTCCCHHHHHH--HHTCHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHCCCCC-----------------------CCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCC
Confidence 99999999999999987432 223344555555555 45555666666666666655
Q ss_pred cCCCCCch
Q psy3910 163 VNGTPERT 170 (348)
Q Consensus 163 v~~~~~~~ 170 (348)
.+..+..+
T Consensus 163 ~~~~g~t~ 170 (192)
T 2rfm_A 163 RDLTGLTA 170 (192)
T ss_dssp BCTTSCBH
T ss_pred cCCCCCCH
Confidence 55444333
No 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.91 E-value=2e-24 Score=183.28 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=139.6
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCC-C---------CCCCCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccc
Q psy3910 81 EYLDVISRDDIKTDILTALS-L---------PRLSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPII 149 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~-~---------~~~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~i 149 (348)
|+|+..|+.+++++|++.+. . ++++.+...+......+++ .+...+..+..+.+++..+. ..++.++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~ 159 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA--FSGCVDI 159 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHCCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH--HCCCHHH
Confidence 99999999999999999872 2 2222223333444444444 45666777777888887777 6778899
Q ss_pred eeeccccccceeecCCCCCc
Q psy3910 150 VSTLLQSNVNILLVNGTPER 169 (348)
Q Consensus 150 v~~l~~~g~~~~iv~~~~~~ 169 (348)
++.|++.|++....+..+..
T Consensus 160 ~~~Ll~~g~~~~~~~~~g~t 179 (237)
T 3b7b_A 160 AEILLAAKCDLHAVNIHGDS 179 (237)
T ss_dssp HHHHHTTTCCTTCCCTTCCC
T ss_pred HHHHHHcCCCCCCcCCCCCC
Confidence 99999998888776654444
No 19
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.91 E-value=1e-24 Score=182.38 Aligned_cols=196 Identities=16% Similarity=0.262 Sum_probs=146.2
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+..+++....+..+..+...+ |. .+...+.+. +||+++...+++.+.++.+++.++..|+|||+.+|+.+|++.
T Consensus 7 ~~~sg~~~~~~~~l~~~~~~~--G~---~~~~~~~~~-~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~ 80 (214)
T 1t15_A 7 MVVSGLTPEEFMLVYKFARKH--HI---TLTNLITEE-TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKE 80 (214)
T ss_dssp EEEESCCHHHHHHHHHHHHHH--TC---EECSSCCTT-CCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHHHh--CC---EEeCccCCC-CcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHC
Confidence 344556666666666777777 76 666666666 999999977766778999999999999999999999999999
Q ss_pred CCCccCccceecccccCCCC-chhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCC
Q psy3910 200 GKVLPVEEFEILGTVDYPLA-KPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPE 278 (348)
Q Consensus 200 ~~~~~e~~~ei~~~~~~~~~-~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~ 278 (348)
+++++|++|++.+....+.. ...+++|. ...++||.|+.||+.+.|. .+++++|+++|+++||+++.+.+...
T Consensus 81 ~~~~~e~~y~~~~~~~~~~~~~~~~~~r~---~~~~~lF~g~~~~~~~~~~---~~~~~~l~~li~~~GG~v~~~~~~~~ 154 (214)
T 1t15_A 81 RKMLNEHDFEVRGDVVNGRNHQGPKRARE---SQDRKIFRGLEICCYGPFT---NMPTDQLEWMVQLCGASVVKELSSFT 154 (214)
T ss_dssp TSCCCGGGGBCCEETTTBTTCCHHHHHHT---CTTSCTTTTCEEEECSCCS---SSCHHHHHHHHHHTTCEECCSGGGCC
T ss_pred CCcCChHHeEeeccccccccccchhhHhh---cCCCcccCCCEEEEEecCC---CCCHHHHHHHHHHCCCEEecCccccc
Confidence 99999999999876332211 12244443 3467899999999999777 67999999999999999998644321
Q ss_pred cccccccceeeccCCCCccccCCceEEEeccC-C-Ccc---cccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 279 SMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-A-LPR---RLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~---~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
... . ..++|+.+++ . +.. ...+..++..|+.+||+|||.+++++|.++|
T Consensus 155 -~~~-----------~------~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y 208 (214)
T 1t15_A 155 -LGT-----------G------VHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTY 208 (214)
T ss_dssp -CST-----------T------CCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGG
T ss_pred -cCC-----------C------CccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcce
Confidence 000 0 1234556554 2 111 1234567899999999999999999999865
No 20
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.91 E-value=7.5e-24 Score=190.04 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=138.2
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 49 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L 128 (351)
T 3utm_A 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128 (351)
T ss_dssp TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCC---------------------------------------------------
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPP--------------------------------------------------- 109 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--------------------------------------------------- 109 (348)
|+|+..|+.+++++|++.+..+.......
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (351)
T 3utm_A 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence 99999999999999999986654321100
Q ss_pred ------------C---CCchhHHHH-HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCch
Q psy3910 110 ------------P---SLPNCIDIV-IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERT 170 (348)
Q Consensus 110 ------------~---~~~~~~~ll-i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~ 170 (348)
. +......++ -.+...+..+..+.++++.+. ..++.++++.|++.|++....+..+..+
T Consensus 209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~n~~d~~g~t~ 283 (351)
T 3utm_A 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA--ERAHNDVMEVLHKHGAKMNALDSLGQTA 283 (351)
T ss_dssp TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 0 111222222 245566666777777777777 7888899999999988888776554443
No 21
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=187.32 Aligned_cols=97 Identities=27% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
|+|.+|..|+||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.. ..|.||||
T Consensus 28 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~ 106 (261)
T 2xai_A 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIH 106 (261)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCCHHH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555554432 23455555
Q ss_pred HHHHcCCHHHHHHHHHcC
Q psy3910 82 YLDVISRDDIKTDILTAL 99 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~ 99 (348)
+|+..|+.++++.|++.+
T Consensus 107 ~A~~~~~~~~v~~Ll~~g 124 (261)
T 2xai_A 107 EAARRGHVECVNSLIAYG 124 (261)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHHcC
Confidence 555555555555555444
No 22
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.91 E-value=2.7e-25 Score=190.88 Aligned_cols=168 Identities=21% Similarity=0.231 Sum_probs=101.8
Q ss_pred CCCCCCCCCCChHHHHHHHcC-------------CHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcC
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIG-------------NESVVRLLLEAGALVNV-PGLDNDTPLHLAARDVRPALAKLLIQYG 66 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g-------------~~~~v~~Ll~~ga~~n~-~~~~g~TpLh~A~~~g~~~~v~~Ll~~g 66 (348)
+|+|.+|.+|+||||+||..| +.++++.|+++|++++. .|..|+||||+|+..|+.+++++|+++|
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 80 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 589999999999999999987 89999999999999975 4889999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CC---------CCCCCCCCCCchhHHHH-HhcCCCCcccccCCch
Q psy3910 67 ADVDKRNIQGHKPLEYLDVISRDDIKTDILTALS-LP---------RLSAAPPPSLPNCIDIV-IYADQLDKTQTSGLAQ 135 (348)
Q Consensus 67 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~-~~---------~~~~~~~~~~~~~~~ll-i~~~~~~~~~~~~~~~ 135 (348)
++++..|..|.||||+|+..|+.+++++|++.+. .. +++.+...+......++ -.+...+..+..+.++
T Consensus 81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 160 (253)
T 1yyh_A 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 9999999999999999999999999999999874 21 12222222233334433 3466677777778888
Q ss_pred HHHHHHcCCCCccceeeccccccceeecCCCCCch
Q psy3910 136 FVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERT 170 (348)
Q Consensus 136 ~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~ 170 (348)
++.+. ..++.++++.|++.|++....+..+...
T Consensus 161 L~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 193 (253)
T 1yyh_A 161 LHWAA--AVNNVDAAVVLLKNGANKDMQNNREETP 193 (253)
T ss_dssp HHHHH--HHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHH--HcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 88777 7778899999999999887766554443
No 23
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.91 E-value=1.3e-24 Score=178.57 Aligned_cols=131 Identities=22% Similarity=0.254 Sum_probs=118.9
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 138 (192)
T 2rfm_A 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138 (192)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccc
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQS 156 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~ 156 (348)
|+|+..|+.+++++|++.+. ..+..+..+.+++..+. ..++.++++.|++.
T Consensus 139 ~~A~~~~~~~~v~~Ll~~ga-----------------------~~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 139 IVASKYGRSEIVKKLLELGA-----------------------DISARDLTGLTAEASAR--IFGRQEVIKIFTEV 189 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTC-----------------------CTTCBCTTSCBHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCC-----------------------CCCCcCCCCCCHHHHHH--HhCcHHHHHHHHhc
Confidence 99999999999999999873 33445677788887777 77777888877664
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=1.7e-24 Score=182.98 Aligned_cols=167 Identities=24% Similarity=0.293 Sum_probs=139.4
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 82 (348)
++.+|..|+||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 112 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCC---------CCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceee
Q psy3910 83 LDVISRDDIKTDILTALSLPRLS---------AAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVST 152 (348)
Q Consensus 83 A~~~~~~~~~~~Ll~~~~~~~~~---------~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~ 152 (348)
|+..|+.+++++|++.+..+... .+...+......+++ .+...+..+..+.+++..+. ..++.++++.
T Consensus 113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~ 190 (231)
T 3aji_A 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC--DEERVEEAKF 190 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHH--HCCCHHHHHH
Confidence 99999999999999988554332 222223333444443 46667777777888888777 7888899999
Q ss_pred ccccccceeecCCCCCchH
Q psy3910 153 LLQSNVNILLVNGTPERTC 171 (348)
Q Consensus 153 l~~~g~~~~iv~~~~~~~~ 171 (348)
|++.|++....+..+..++
T Consensus 191 Ll~~ga~~~~~~~~g~t~l 209 (231)
T 3aji_A 191 LVTQGASIYIENKEEKTPL 209 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHH
T ss_pred HHHCCCCCCCCCCCCCCHH
Confidence 9999999887665554443
No 25
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.91 E-value=4.3e-25 Score=192.95 Aligned_cols=164 Identities=18% Similarity=0.059 Sum_probs=132.0
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
++|.+|..|+||||+||..|+.++|++|+++|+++|..| |+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 689999999999999999999999999999999999884 899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCcccee
Q psy3910 82 YLDVISRDDIKTDILTALSL----------PRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVS 151 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~----------~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~ 151 (348)
+|+..|+.+++++|++.+.. ++++.+...+......+++...........+.++++ .|...++.++++
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~--~A~~~g~~~~v~ 178 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH--ITIKNGHVDMMI 178 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHH--HHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHH--HHHHcChHHHHH
Confidence 99999999999999999843 334444444455555555543222211123444444 444888899999
Q ss_pred eccccccceeecCCCCCc
Q psy3910 152 TLLQSNVNILLVNGTPER 169 (348)
Q Consensus 152 ~l~~~g~~~~iv~~~~~~ 169 (348)
.|++.|++....+..+..
T Consensus 179 ~Ll~~gad~n~~~~~g~t 196 (285)
T 3kea_A 179 LLLDYMTSTNTNNSLLFI 196 (285)
T ss_dssp HHHHHHHHTCTTCCCBCC
T ss_pred HHHHcCCCCCcccCCCCC
Confidence 999999988776655444
No 26
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=5.7e-24 Score=168.17 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=106.4
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
+++ .|..|+||||+||..|+.+++++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 27 ~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 105 (153)
T 1awc_B 27 PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105 (153)
T ss_dssp CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 344 5888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceee
Q psy3910 82 YLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVST 152 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~ 152 (348)
+|+..|+.+++++|++.+.+ .+..+..+.+++..+. ..++.++++.
T Consensus 106 ~A~~~~~~~~v~~Ll~~ga~-----------------------~~~~~~~g~t~l~~A~--~~~~~~i~~~ 151 (153)
T 1awc_B 106 WATEHNHQEVVELLIKYGAD-----------------------VHTQSKFCKTAFDISI--DNGNEDLAEI 151 (153)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-----------------------ccccCCCCCCHHHHHH--HcCCHHHHHH
Confidence 99999999999999998743 2234455666666666 5555555543
No 27
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=8.5e-25 Score=173.58 Aligned_cols=138 Identities=20% Similarity=0.076 Sum_probs=113.2
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC-HHH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHK-PLE 81 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-pL~ 81 (348)
++..+..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|.| |||
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 4567889999999999999999999999999999999999999999995 89999999999999999999999999 999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccccccee
Q psy3910 82 YLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNIL 161 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~ 161 (348)
+|+..|+.+++++|++.+.+ .+..+..+.+++..+. ..++.++++.|++.|++..
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~-----------------------~~~~d~~g~tpl~~A~--~~~~~~~v~~Ll~~ga~~~ 138 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGAR-----------------------LDVRDAWGRLPVDLAE--ELGHRDVARYLRAAAGGTR 138 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-----------------------SSCCCTTCCCHHHHHH--HHTCHHHHHHHSSCC----
T ss_pred HHHHCCCHHHHHHHHHcCCC-----------------------CcccCCCCCCHHHHHH--HhCHHHHHHHHHHcCCCCC
Confidence 99999999999999998733 3334556777777777 7778899999999999887
Q ss_pred ecCCC
Q psy3910 162 LVNGT 166 (348)
Q Consensus 162 iv~~~ 166 (348)
..+..
T Consensus 139 ~~~~~ 143 (156)
T 1bi7_B 139 GSNHA 143 (156)
T ss_dssp -----
T ss_pred ccCcC
Confidence 76633
No 28
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=2.6e-24 Score=166.70 Aligned_cols=99 Identities=31% Similarity=0.345 Sum_probs=95.9
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl 117 (136)
T 2jab_A 38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117 (136)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcC
Q psy3910 81 EYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~ 99 (348)
|+|+..|+.+++++|++.|
T Consensus 118 ~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 118 DISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999865
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.91 E-value=7.5e-25 Score=192.53 Aligned_cols=92 Identities=27% Similarity=0.319 Sum_probs=55.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 88 (348)
.|.||||.||..|+.++|+.|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 45566666666666666666666666666555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCC
Q psy3910 89 DDIKTDILTALS 100 (348)
Q Consensus 89 ~~~~~~Ll~~~~ 100 (348)
.+++++|++.+.
T Consensus 119 ~~~v~~Ll~~g~ 130 (299)
T 1s70_B 119 LDIAEYLISQGA 130 (299)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC
Confidence 666666665553
No 30
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.91 E-value=2.6e-24 Score=177.88 Aligned_cols=146 Identities=19% Similarity=0.251 Sum_probs=95.9
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI-QYGADVDKRNIQGHKPL 80 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~tpL 80 (348)
++|.+|..|+||||+||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++|+ ..+++++..|..|.|||
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L 110 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH
Confidence 56677777777777777777777777777777777777777777777777777777777777 45567777777777777
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCC-----ccceeeccc
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADV-----PIIVSTLLQ 155 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~-----~~iv~~l~~ 155 (348)
|+|+..|+.+++++|++.+. ...+..+..+.++++.+. ..+. .++++.|++
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~----------------------~~~~~~~~~g~t~L~~A~--~~~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGR----------------------EDIDFQNDFGYTALIEAV--GLREGNQLYQDIVKLLME 166 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCC----------------------CCTTCCCTTSCCHHHHHH--HSSCCSHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCC----------------------CCcCCCCCCCCCHHHHHH--HhccchhhHHHHHHHHHH
Confidence 77777777777777776651 223334445555665555 3332 466677777
Q ss_pred cccceeecCCCCCchH
Q psy3910 156 SNVNILLVNGTPERTC 171 (348)
Q Consensus 156 ~g~~~~iv~~~~~~~~ 171 (348)
.|++....+..+..++
T Consensus 167 ~ga~~~~~~~~g~t~l 182 (201)
T 3hra_A 167 NGADQSIKDNSGRTAM 182 (201)
T ss_dssp TTCCTTCCCTTSCCHH
T ss_pred CCCCCCccCCCCCCHH
Confidence 7666666554444333
No 31
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.91 E-value=1.7e-24 Score=185.84 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=137.1
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHH
Q psy3910 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA-DVDKRNIQGHKPLEYL 83 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A 83 (348)
..|..|+||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++|+++|+ +++..|..|.||||+|
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCC---------CCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeec
Q psy3910 84 DVISRDDIKTDILTALSLPRL---------SAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTL 153 (348)
Q Consensus 84 ~~~~~~~~~~~Ll~~~~~~~~---------~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l 153 (348)
+..|+.++++.|++.+..... +.+...+......+++ .+...+..+..+.+++..+. ..++.++++.|
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--~~~~~~~v~~L 209 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA--REGSYETAKVL 209 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HCCCHHHHHHH
Confidence 999999999999998855432 2222233334444444 46677777777888888777 77788999999
Q ss_pred cccccceeecCCCCCch
Q psy3910 154 LQSNVNILLVNGTPERT 170 (348)
Q Consensus 154 ~~~g~~~~iv~~~~~~~ 170 (348)
++.|++..+.+..+..+
T Consensus 210 l~~ga~~~~~d~~g~tp 226 (253)
T 1yyh_A 210 LDHFANRDITDHMDRLP 226 (253)
T ss_dssp HHTTCCTTCCCTTCCCH
T ss_pred HHcCCCccccccCCCCH
Confidence 99999988776554443
No 32
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=187.05 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=133.8
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 82 (348)
++.+|..|+||||+||..|+.++|++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCC--------CCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeec
Q psy3910 83 LDVISRDDIKTDILTALSLPRLS--------AAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTL 153 (348)
Q Consensus 83 A~~~~~~~~~~~Ll~~~~~~~~~--------~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l 153 (348)
|+..|+.+++++|++.+...... .+...+...+..+++ .+...+..+..+.+++..+. ..++.++++.|
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--~~~~~~~v~~L 209 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC--ENQQRACVKKL 209 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH--HTTCHHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HcCcHHHHHHH
Confidence 99999999999999998654322 222222333444443 45667777777778877777 88888999999
Q ss_pred cccccceee
Q psy3910 154 LQSNVNILL 162 (348)
Q Consensus 154 ~~~g~~~~i 162 (348)
++.|++...
T Consensus 210 l~~ga~~~~ 218 (285)
T 3d9h_A 210 LESGADVNQ 218 (285)
T ss_dssp HHTTCCTTC
T ss_pred HHCCCCCCC
Confidence 999887763
No 33
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.91 E-value=2.6e-24 Score=176.25 Aligned_cols=179 Identities=19% Similarity=0.251 Sum_probs=130.9
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+..++++...+..+......+ +.. .+...+.+. +||+++... .+|.+++.+++.|+|||+++|+.+|++.
T Consensus 14 ~~~sgl~~~~~~~l~~~i~~l--gG~--~~~~~~~~~-~THlv~~~~-----~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~ 83 (199)
T 3u3z_A 14 LVMTSMPSEKQNVVIQVVDKL--KGF--SIAPDVCET-TTHVLSGKP-----LRTLNVLLGIARGCWVLSYDWVLWSLEL 83 (199)
T ss_dssp EEEESCCHHHHHHHHHHHHHH--CSC--EEESSCCTT-EEEEEESSC-----CCBHHHHHHHHTTCEEEETHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHc--CCc--EEecCCCCC-CeEEEECCC-----CCCHHHHHHHHCCCcEEeHHHHHHHhhC
Confidence 345666666666666666666 541 333555555 999999733 5789999999999999999999999999
Q ss_pred CCCccCccceecccccCCCCchhhhhHHhH----hhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCC
Q psy3910 200 GKVLPVEEFEILGTVDYPLAKPFHRSRENK----ENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREP 275 (348)
Q Consensus 200 ~~~~~e~~~ei~~~~~~~~~~~~~~~r~~~----~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p 275 (348)
+++++|++||+.+. .......|..+ .+..++||.|+.|++.+++. .+++++|++||+++||+|+...+
T Consensus 84 g~~l~e~~y~~~~~-----~~~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~---~~~~~~L~~lI~~~GG~v~~~~~ 155 (199)
T 3u3z_A 84 GHWISEEPFELSHH-----FPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPAS---SPPVAKLCELVHLCGGRVSQVPR 155 (199)
T ss_dssp TSCCCSGGGBCTTT-----CTHHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTC---SSCHHHHHHHHHHTTCCBCSSGG
T ss_pred CCCCChhhccccCC-----ccccccchhhhhhhcccccchhhCCCeEEEECCCC---CCCHHHHHHHHHHcCCEEeccCC
Confidence 99999999999987 21122334433 23357999999755555566 78999999999999999987532
Q ss_pred CCCcccccccceeeccCCCCccccCCceEEEeccCCCcccccccccccccchHHHHHHHhhccccCCCCCC
Q psy3910 276 DPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSPY 346 (348)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~~ 346 (348)
. ++ ++|-+ ... ....++.+|+.+||+|||.++++||.++|.
T Consensus 156 ~------------------------~~-iiI~~-~~~----~~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~ 196 (199)
T 3u3z_A 156 Q------------------------AS-IVIGP-YSG----KKKATVKYLSEKWVLDSITQHKVCAPENYL 196 (199)
T ss_dssp G------------------------CS-EEESC-CCS----CCCTTCEEECHHHHHHHHHHTSCCCGGGGB
T ss_pred C------------------------CE-EEEeC-Cch----hccCCCcEEChhHHHHHHHcCCcCChHhcc
Confidence 1 11 23311 111 123567899999999999999999999753
No 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=2.3e-24 Score=182.42 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=58.1
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALV-----NVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNI-- 74 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~-----n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-- 74 (348)
|+|.+|..|+||||+||..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 108 (232)
T 2rfa_A 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS 108 (232)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc
Confidence 45555666666666666666666666666665554 44455566666666666666666666666666555543
Q ss_pred -----------CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy3910 75 -----------QGHKPLEYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 75 -----------~g~tpL~~A~~~~~~~~~~~Ll~~~ 99 (348)
.|.||||+|+..|+.+++++|++.+
T Consensus 109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 144 (232)
T 2rfa_A 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144 (232)
T ss_dssp GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT
T ss_pred ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4566666666666666666666555
No 35
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.6e-24 Score=167.95 Aligned_cols=99 Identities=26% Similarity=0.318 Sum_probs=96.3
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLD-NDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+||. |+.+++++|+++|+++|.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 36 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 114 (136)
T 1d9s_A 36 ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114 (136)
T ss_dssp CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCH
T ss_pred CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 5899999999999999999 9999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCC
Q psy3910 80 LEYLDVISRDDIKTDILTALS 100 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~ 100 (348)
||+|+..++.+++++|+++|+
T Consensus 115 l~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 115 VDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999874
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.91 E-value=6.6e-24 Score=178.40 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=137.3
Q ss_pred CCCCC-CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCH
Q psy3910 2 NPNVK-DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA-DVDKRNIQGHKP 79 (348)
Q Consensus 2 din~~-d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~tp 79 (348)
+++.. |..|+||||+||..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+++|+ +++..+..|.||
T Consensus 16 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 95 (223)
T 2f8y_A 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 95 (223)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCH
T ss_pred CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcH
Confidence 55554 8999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCC---------CCCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPR---------LSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPII 149 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~i 149 (348)
||+|+..|+.++++.|++.+.... ++.+...+......+++ .+...+..+..+.+++..+. ..++.++
T Consensus 96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~ 173 (223)
T 2f8y_A 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA--REGSYET 173 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHTCHHH
T ss_pred HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH--HcCCHHH
Confidence 999999999999999999875443 22333333444444444 45666677777788887777 7778899
Q ss_pred eeeccccccceeecCCCCCc
Q psy3910 150 VSTLLQSNVNILLVNGTPER 169 (348)
Q Consensus 150 v~~l~~~g~~~~iv~~~~~~ 169 (348)
++.|++.|++....+..+..
T Consensus 174 v~~Ll~~ga~~~~~~~~g~t 193 (223)
T 2f8y_A 174 AKVLLDHFANRDITDHMDRL 193 (223)
T ss_dssp HHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHHcCCCCccccccCCC
Confidence 99999998887776644433
No 37
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=8.3e-24 Score=167.69 Aligned_cols=127 Identities=24% Similarity=0.297 Sum_probs=110.1
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
++|.+|..|+||||+ |..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 788999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccc
Q psy3910 82 YLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQ 155 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~ 155 (348)
+|+..|+.+++++|++. .. .+..+..+.+++..+. ..++.++++.|++
T Consensus 107 ~A~~~~~~~~v~~Ll~~-~~-----------------------~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE-SD-----------------------LHRRDARGLTPLELAL--QRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHTCHHHHHHHHTT-SC-----------------------TTCCCTTSCCHHHHHH--HSCCHHHHHHHHT
T ss_pred HHHHhChHHHHHHHHhc-cC-----------------------CCCcCCCCCCHHHHHH--HcCcHHHHHHHHh
Confidence 99999999999999876 22 2223445667776666 6667777776655
No 38
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.91 E-value=4.9e-24 Score=186.26 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=139.1
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+ .|.|||
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L 161 (285)
T 3d9h_A 83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPI 161 (285)
T ss_dssp CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHH
T ss_pred CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999998755 499999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCC---------CCCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPR---------LSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIV 150 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~---------~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv 150 (348)
|+|+..|+.++++.|++.+.... ++.+...+...+..+++ .+...+. +..+.+++..+. ..++.+++
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~--~~~~~~~v 238 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVV--RTASEELA 238 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHH--HTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHH--HcCCHHHH
Confidence 99999999999999999885543 33333444455555554 3455553 566777777776 88889999
Q ss_pred eeccccccceeecCCCCCchHh
Q psy3910 151 STLLQSNVNILLVNGTPERTCI 172 (348)
Q Consensus 151 ~~l~~~g~~~~iv~~~~~~~~~ 172 (348)
+.|++.|++....+..+...+.
T Consensus 239 ~~Ll~~gad~~~~d~~g~t~l~ 260 (285)
T 3d9h_A 239 CLLMDFGADTQAKNAEGKRPVE 260 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCGGG
T ss_pred HHHHHCCCCCCCcCCCCCCHHH
Confidence 9999999998887766555443
No 39
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=183.60 Aligned_cols=152 Identities=23% Similarity=0.293 Sum_probs=128.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 88 (348)
+|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCC--------CCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeeccccccc
Q psy3910 89 DDIKTDILTALSLPRL--------SAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVN 159 (348)
Q Consensus 89 ~~~~~~Ll~~~~~~~~--------~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~ 159 (348)
.++++.|++.+..... +.+...+......+++ .+...+..+..+.+++..+. ..++.++++.|++.|++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~ 159 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC--ENQQRACVKKLLESGAD 159 (261)
T ss_dssp HHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH--HTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHH--HhCCHHHHHHHHHcCCC
Confidence 9999999999865432 2222233334444443 46667777777778877777 78888999999999888
Q ss_pred eee
Q psy3910 160 ILL 162 (348)
Q Consensus 160 ~~i 162 (348)
...
T Consensus 160 ~~~ 162 (261)
T 2xai_A 160 VNQ 162 (261)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.90 E-value=1.7e-24 Score=183.72 Aligned_cols=140 Identities=24% Similarity=0.240 Sum_probs=97.0
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCC------CCCCCCC
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD------VDKRNIQ 75 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad------~~~~d~~ 75 (348)
++|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++ ++..|..
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence 5777777888888888888888888888888888888787888888888888888888888887765 4566777
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccc-cCCchHHHHHHcCCCCccceeecc
Q psy3910 76 GHKPLEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQT-SGLAQFVKTLSSGADVPIIVSTLL 154 (348)
Q Consensus 76 g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~-~~~~~~~~~la~~~~~~~iv~~l~ 154 (348)
|.||||+|+..|+.+++++|++.+.... ..+. .+.++++.+. ..++.++++.|+
T Consensus 117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------------------~~~~~~g~tpL~~A~--~~~~~~~v~~Ll 171 (236)
T 1ikn_D 117 GHTCLHLASIHGYLGIVELLVSLGADVN-----------------------AQEPCNGRTALHLAV--DLQNPDLVSLLL 171 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHTCCTT-----------------------CCCTTTCCCHHHHHH--HTTCHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------CCCCCCCCCHHHHHH--HcCCHHHHHHHH
Confidence 8888888888888888888887764332 2222 3444444444 445555555555
Q ss_pred ccccceeecCCC
Q psy3910 155 QSNVNILLVNGT 166 (348)
Q Consensus 155 ~~g~~~~iv~~~ 166 (348)
+.|++....+..
T Consensus 172 ~~ga~~~~~~~~ 183 (236)
T 1ikn_D 172 KCGADVNRVTYQ 183 (236)
T ss_dssp TTTCCSCCCCTT
T ss_pred HcCCCCCcccCC
Confidence 555555544433
No 41
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.90 E-value=3.1e-24 Score=181.19 Aligned_cols=195 Identities=18% Similarity=0.328 Sum_probs=137.9
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+..+++....+..+..+...+ |. .+...+.+. +||+++.....+.+.+|.+++.++..|+|||+.+|+.+|++.
T Consensus 10 i~~sg~~~~~~~~l~~~~~~~--G~---~~~~~~~~~-~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~~ 83 (229)
T 1l0b_A 10 MVVSGLTPKEVMIVQKFAEKY--RL---ALTDVITEE-TTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQE 83 (229)
T ss_dssp EEEESCCHHHHHHHHHHHHHT--TC---EECSSCCSS-CCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHc--CC---EEeCCcCCC-CCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHHHC
Confidence 344556655555566666666 66 666666666 999999977666678999999999999999999999999999
Q ss_pred CCCccCccceecccccCCC-CchhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCC
Q psy3910 200 GKVLPVEEFEILGTVDYPL-AKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPE 278 (348)
Q Consensus 200 ~~~~~e~~~ei~~~~~~~~-~~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~ 278 (348)
+++++|++|++.+...... ....+++|.. .++||.|+.||+.+.|. .++++.|+++|+++||+++.+.+..+
T Consensus 84 ~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~----~~~lF~g~~~~~~~~~~---~~~~~~l~~li~~~GG~v~~~~~~~~ 156 (229)
T 1l0b_A 84 RKLLSVHEFEVKGDVVTGSNHQGPRRSRES----QEKLFEGLQIYCCEPFT---NMPKDELERMLQLCGASVVKELPLLT 156 (229)
T ss_dssp TSCCCSGGGBCCEETTTCSSSCHHHHHHHH----C--CCTTCEEEECSCCS---SSCHHHHHHHHHHTTCEEECSSSCGG
T ss_pred CCcCChHHeEeccccccccccccchhhhhh----hhhhhcCceEEEEecCC---CCCHHHHHHHHHHCCCEEeCCccccc
Confidence 9999999999987633221 1222445543 25899999999998777 67999999999999999998654421
Q ss_pred cccccccceeeccCCCCccccCCceEEEeccC--CCc---ccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 279 SMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE--ALP---RRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~---~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
. . ..++++||..++ ... .......++.+|+.+||+|||.+++++|.++|
T Consensus 157 ~-~-----------------~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y 210 (229)
T 1l0b_A 157 R-D-----------------TGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAY 210 (229)
T ss_dssp G-C-----------------CSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGG
T ss_pred c-c-----------------CCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCccce
Confidence 0 0 124565666644 111 12234567999999999999999999998754
No 42
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=1.2e-23 Score=160.15 Aligned_cols=125 Identities=34% Similarity=0.432 Sum_probs=107.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 88 (348)
+|+||||.||..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccccc
Q psy3910 89 DDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNV 158 (348)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~ 158 (348)
.+++++|++.+.. .+..+..+.+++..+. ..++.++++.|++.|+
T Consensus 81 ~~~~~~Ll~~g~~-----------------------~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 81 LEVVKLLLEAGAD-----------------------VNAKDKNGRTPLHLAA--RNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCC-----------------------CcccCCCCCCHHHHHH--HcCcHHHHHHHHHcCC
Confidence 9999999988733 2233445666666666 6777788888877765
No 43
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.90 E-value=7.3e-24 Score=180.14 Aligned_cols=169 Identities=21% Similarity=0.259 Sum_probs=121.5
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLE----AGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHK 78 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~----~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 78 (348)
++.+|.+|+||||+||..|+.++|+.|++ .|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 36778889999999999999998888886 78888888888999999999999999999999999998888888999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCC-------------CCCCCCCchhHHHHH-hcCCCCccc-ccCCchHHHHHHcC
Q psy3910 79 PLEYLDVISRDDIKTDILTALSLPRLS-------------AAPPPSLPNCIDIVI-YADQLDKTQ-TSGLAQFVKTLSSG 143 (348)
Q Consensus 79 pL~~A~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~~~~~~~~~lli-~~~~~~~~~-~~~~~~~~~~la~~ 143 (348)
|||+|+..|+.++++.|++.+...... .+...+......+++ .+...+..+ ..+.+++..+. .
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~--~ 159 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV--E 159 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--H
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH--H
Confidence 999999999999999888887522111 111122233333333 344444444 55677777766 7
Q ss_pred CCCccceeeccccccceeecCCCCCchHhh
Q psy3910 144 ADVPIIVSTLLQSNVNILLVNGTPERTCIA 173 (348)
Q Consensus 144 ~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~ 173 (348)
.++.++++.|++.|++....+..+...+..
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 189 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHS 189 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 777888888888888877766555444433
No 44
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.90 E-value=1.3e-23 Score=178.36 Aligned_cols=167 Identities=22% Similarity=0.231 Sum_probs=140.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG-ADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tp 79 (348)
+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++| ++++..|..|.||
T Consensus 35 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 114 (237)
T 3b7b_A 35 ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114 (237)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCH
T ss_pred CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCH
Confidence 578999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCC---------CCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLS---------AAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPII 149 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~---------~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~i 149 (348)
||+|+..|+.+++++|++.+...... .+...+......+++ .+...+..+..+.+++..+. ..++.++
T Consensus 115 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~ 192 (237)
T 3b7b_A 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA--RENRYDC 192 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH--HTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HhCCHhH
Confidence 99999999999999999988554332 222223333444443 45666777777888888777 7888899
Q ss_pred eeeccccccceeecCCCCCc
Q psy3910 150 VSTLLQSNVNILLVNGTPER 169 (348)
Q Consensus 150 v~~l~~~g~~~~iv~~~~~~ 169 (348)
++.|++.|++....+..+..
T Consensus 193 v~~Ll~~gad~~~~d~~g~t 212 (237)
T 3b7b_A 193 VVLFLSRDSDVTLKNKEGET 212 (237)
T ss_dssp HHHHHTTTCCTTCCCTTSCC
T ss_pred HHHHHHcCCCCCccCCCCCC
Confidence 99999999988877655444
No 45
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.90 E-value=7.2e-24 Score=192.32 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=144.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC---CCCCCCCCCCC
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG---ADVDKRNIQGH 77 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~g~ 77 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++| ++++..|..|.
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~ 236 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CHHHHHHHcC---CHHHHHHHHHcCCCC-----------------CCCCCCCCCCchhHHHHHh-c-CCCCcccccCCch
Q psy3910 78 KPLEYLDVIS---RDDIKTDILTALSLP-----------------RLSAAPPPSLPNCIDIVIY-A-DQLDKTQTSGLAQ 135 (348)
Q Consensus 78 tpL~~A~~~~---~~~~~~~Ll~~~~~~-----------------~~~~~~~~~~~~~~~lli~-~-~~~~~~~~~~~~~ 135 (348)
||||+|+..+ +.+++++|++.+... +++.+...+...+..+++. + ...+..+..+.++
T Consensus 237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~Tp 316 (373)
T 2fo1_E 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 316 (373)
T ss_dssp CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred CHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCH
Confidence 9999999998 899999999987544 3344445555666666663 3 6677777778888
Q ss_pred HHHHHHcCCCCccceeeccccccceeecCCCCCch
Q psy3910 136 FVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERT 170 (348)
Q Consensus 136 ~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~ 170 (348)
+..+. ..++.++++.|++.|++....+..+...
T Consensus 317 L~~A~--~~g~~~iv~~Ll~~gad~~~~d~~g~t~ 349 (373)
T 2fo1_E 317 IMLAA--QEGRIEVVMYLIQQGASVEAVDATDHTA 349 (373)
T ss_dssp HHHHH--HHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred HHHHH--HcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence 87777 7788899999999999988877554443
No 46
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=3.5e-23 Score=166.02 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=119.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|.+|..|+||||+|+..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 106 (167)
T 3v31_A 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106 (167)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccccc
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNV 158 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~ 158 (348)
|+|+..|+.+++++|++.+. ..+..+..+.+++..+. ..++.++++.|.+.+.
T Consensus 107 ~~A~~~~~~~~v~~Ll~~g~-----------------------~~~~~~~~g~t~l~~A~--~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 107 LYAVHGNHVKCVKMLLESGA-----------------------DPTIETDSGYNSMDLAV--ALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHTTCHHHHHHHHHTTC-----------------------CTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCC-----------------------CCCCcCCCCCCHHHHHH--HcCcHHHHHHHHHHHH
Confidence 99999999999999999873 23345667788888777 6677788888877643
No 47
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.90 E-value=2.2e-23 Score=177.19 Aligned_cols=169 Identities=23% Similarity=0.228 Sum_probs=142.4
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCC
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGA----DVDKRNIQG 76 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g 76 (348)
+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+ +++..|..|
T Consensus 37 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g 116 (241)
T 1k1a_A 37 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116 (241)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCC
Q psy3910 77 HKPLEYLDVISRDDIKTDILTALSLPRLS----------AAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGAD 145 (348)
Q Consensus 77 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~ 145 (348)
.||||+|+..|+.+++++|++.+...... .+...+...+..+++ .+...+..+..+.++++.+. ..+
T Consensus 117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~ 194 (241)
T 1k1a_A 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS--GRG 194 (241)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH--HHT
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcC
Confidence 99999999999999999999988554332 223333444454444 46677777777888888777 777
Q ss_pred CccceeeccccccceeecCCCCCchH
Q psy3910 146 VPIIVSTLLQSNVNILLVNGTPERTC 171 (348)
Q Consensus 146 ~~~iv~~l~~~g~~~~iv~~~~~~~~ 171 (348)
+.++++.|++.|++....+..+..++
T Consensus 195 ~~~~v~~Ll~~ga~~~~~~~~g~tpl 220 (241)
T 1k1a_A 195 LLPLVRTLVRSGADSSLKNCHNDTPL 220 (241)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred CHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence 88999999999998887765544433
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.90 E-value=1.2e-23 Score=180.80 Aligned_cols=146 Identities=23% Similarity=0.240 Sum_probs=124.8
Q ss_pred CCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCC-----------CCCCChHHHHHHHcCCHHHHHHH
Q psy3910 1 MNPNV----KDNAGWTPLHDAVSI---GNESVVRLLLEAGALVNVP-----------GLDNDTPLHLAARDVRPALAKLL 62 (348)
Q Consensus 1 adin~----~d~~G~T~Lh~A~~~---g~~~~v~~Ll~~ga~~n~~-----------~~~g~TpLh~A~~~g~~~~v~~L 62 (348)
+|+|. +|..|+||||+||.. |+.++|++|+++|++++.. |..|.||||+|+..|+.+++++|
T Consensus 30 ~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L 109 (256)
T 2etb_A 30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109 (256)
T ss_dssp CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHH
Confidence 47887 899999999999999 9999999999999988743 36799999999999999999999
Q ss_pred HhcCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHHH---cCCCCCCCCCCCCCCchhHHHHHhcCCCC
Q psy3910 63 IQYGADVDKRNIQ-------------GHKPLEYLDVISRDDIKTDILT---ALSLPRLSAAPPPSLPNCIDIVIYADQLD 126 (348)
Q Consensus 63 l~~gad~~~~d~~-------------g~tpL~~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~~lli~~~~~~ 126 (348)
+++|++++..|.. |.||||+|+..|+.+++++|++ .+. ..+
T Consensus 110 l~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga-----------------------~~n 166 (256)
T 2etb_A 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA-----------------------SLE 166 (256)
T ss_dssp HHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC-----------------------CTT
T ss_pred HHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC-----------------------CcC
Confidence 9999999999886 9999999999999999999999 653 334
Q ss_pred cccccCCchHHHHHHcCCCCcc-------ceeeccccccce-------eecCCCCCc
Q psy3910 127 KTQTSGLAQFVKTLSSGADVPI-------IVSTLLQSNVNI-------LLVNGTPER 169 (348)
Q Consensus 127 ~~~~~~~~~~~~~la~~~~~~~-------iv~~l~~~g~~~-------~iv~~~~~~ 169 (348)
..+..+.++++.+...+.+..+ +++.|++.|++. ...+..+..
T Consensus 167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~t 223 (256)
T 2etb_A 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223 (256)
T ss_dssp CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCC
Confidence 4556778888888755577767 999999998888 555544444
No 49
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.89 E-value=1.8e-23 Score=175.78 Aligned_cols=157 Identities=24% Similarity=0.221 Sum_probs=127.2
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGA-LVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga-~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 49 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 128 (223)
T 2f8y_A 49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128 (223)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcH
Confidence 5788899999999999999999999999999987 888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCC---------CCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLS---------AAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPII 149 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~---------~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~i 149 (348)
||+|+..|+.+++++|++.+...... .+...+...+..+++ .+...+..+..+.+++..+. ..++.++
T Consensus 129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~--~~~~~~i 206 (223)
T 2f8y_A 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ--ERMHHDI 206 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHH--HhcchHH
Confidence 99999999999999999887554332 222223333444443 45666666777777777777 7888899
Q ss_pred eeeccccccc
Q psy3910 150 VSTLLQSNVN 159 (348)
Q Consensus 150 v~~l~~~g~~ 159 (348)
++.|++.|+.
T Consensus 207 ~~~L~~~g~~ 216 (223)
T 2f8y_A 207 VRLLDEYNLV 216 (223)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 9999887664
No 50
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=2e-24 Score=176.25 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=108.3
Q ss_pred CCCCCC-CCCChHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC------HHHHHHHHhcCCCCC
Q psy3910 2 NPNVKD-NAGWTPLHDAVSIGNE----SVVRLLLEAGALVNVPGLDNDTPLHLAARDVR------PALAKLLIQYGADVD 70 (348)
Q Consensus 2 din~~d-~~G~T~Lh~A~~~g~~----~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~------~~~v~~Ll~~gad~~ 70 (348)
++|.+| ..|+||||+|+.+|+. ++|++||++||++|.+|..|+||||+|+..|+ .+++++||++|||+|
T Consensus 29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 456666 6799999999999985 48999999999999999999999999999987 588999999999999
Q ss_pred CCCCCCC-CHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcC
Q psy3910 71 KRNIQGH-KPLEYLDVIS-----RDDIKTDILT-ALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSG 143 (348)
Q Consensus 71 ~~d~~g~-tpL~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~ 143 (348)
.+|..|+ ||||+|+..+ +.+++++|++ .| ..++..+..+.+++..+. .
T Consensus 109 ~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-----------------------ad~~~~d~~G~TpL~~A~--~ 163 (186)
T 3t8k_A 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-----------------------LQLLIKDKWGLTALEFVK--R 163 (186)
T ss_dssp SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-----------------------CCTTCCCTTSCCHHHHHH--T
T ss_pred ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-----------------------CCCcccCCCCCCHHHHHH--H
Confidence 9999999 9999999854 3567888887 65 444555667777777766 7
Q ss_pred CCCccceeecccc
Q psy3910 144 ADVPIIVSTLLQS 156 (348)
Q Consensus 144 ~~~~~iv~~l~~~ 156 (348)
.++..++++|.+.
T Consensus 164 ~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 164 CQKPIALKMMEDY 176 (186)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 7777887777654
No 51
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=6.2e-23 Score=155.97 Aligned_cols=97 Identities=19% Similarity=0.091 Sum_probs=90.4
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q psy3910 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDV 85 (348)
Q Consensus 6 ~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 85 (348)
.+..|.||||+|+..|+.++++.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCC
Q psy3910 86 ISRDDIKTDILTALSLP 102 (348)
Q Consensus 86 ~~~~~~~~~Ll~~~~~~ 102 (348)
.|+.+++++|++.+.+.
T Consensus 83 ~~~~~~v~~Ll~~ga~~ 99 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADK 99 (123)
T ss_dssp HTCHHHHHHHHHTTCCT
T ss_pred cCCHHHHHHHHHcCCCC
Confidence 99999999999998543
No 52
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=3.7e-23 Score=191.58 Aligned_cols=162 Identities=22% Similarity=0.292 Sum_probs=104.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|..|..|+||||+||..|+.++|++|+++|+++|..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 84 (437)
T 1n11_A 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84 (437)
T ss_dssp ----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCC---------CCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAA---------PPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIV 150 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~---------~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv 150 (348)
|+|+..|+.+++++|++.+.++..... ...+.......++ .+.........+.+++..+. ..++.+++
T Consensus 85 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v 162 (437)
T 1n11_A 85 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA--KYGKVRVA 162 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH--HcCCHHHH
Confidence 888888888888888887755433211 1111222222222 23333444445555555555 55566666
Q ss_pred eeccccccceeecC
Q psy3910 151 STLLQSNVNILLVN 164 (348)
Q Consensus 151 ~~l~~~g~~~~iv~ 164 (348)
+.|++.|++....+
T Consensus 163 ~~Ll~~g~~~~~~~ 176 (437)
T 1n11_A 163 ELLLERDAHPNAAG 176 (437)
T ss_dssp HHHHHTTCCTTCCC
T ss_pred HHHHhCCCCCCCCC
Confidence 66666655554444
No 53
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=6.1e-23 Score=163.69 Aligned_cols=100 Identities=28% Similarity=0.450 Sum_probs=96.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD-VDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++ ++..|..|.||
T Consensus 61 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 140 (162)
T 1ihb_A 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140 (162)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence 58899999999999999999999999999999999999999999999999999999999999999998 69999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCC
Q psy3910 80 LEYLDVISRDDIKTDILTALS 100 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~ 100 (348)
||+|+..|+.+++++|+++|+
T Consensus 141 l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 141 CDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHcCCHHHHHHHHHhCC
Confidence 999999999999999999884
No 54
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.89 E-value=5.8e-24 Score=179.71 Aligned_cols=155 Identities=23% Similarity=0.255 Sum_probs=123.1
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 64 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 143 (231)
T 3aji_A 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143 (231)
T ss_dssp CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCC---------CCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRL---------SAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIV 150 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~---------~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv 150 (348)
|+|+..|+.++++.|++.+..... +.+...+...+..+++ .+...+..+..+.+++..+. ..++..++
T Consensus 144 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~--~~~~~~i~ 221 (231)
T 3aji_A 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILK 221 (231)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC--HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--hhHHHHHH
Confidence 999999999999999998854433 2223333334444443 35555555556666655443 44455555
Q ss_pred eeccccc
Q psy3910 151 STLLQSN 157 (348)
Q Consensus 151 ~~l~~~g 157 (348)
++|.+.|
T Consensus 222 ~lL~~~~ 228 (231)
T 3aji_A 222 RLAEGEE 228 (231)
T ss_dssp HHHHHHH
T ss_pred HHHcccc
Confidence 5555443
No 55
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.89 E-value=4.5e-24 Score=190.17 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=132.1
Q ss_pred CCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC---HHHHHHHHhcC-CCCCCCCCC
Q psy3910 1 MNPNV-KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVR---PALAKLLIQYG-ADVDKRNIQ 75 (348)
Q Consensus 1 adin~-~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~g-ad~~~~d~~ 75 (348)
+|+|. +|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+ .++++.|++.+ ++++.+|..
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~ 200 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence 58899 89999999999999999999999999999999999999999999999999 78888898887 889999999
Q ss_pred CCCHHHHHHH----cCCHHHHHHHHHcC--------------------CCCCCCCCCCCCCchhH--------HHHHhcC
Q psy3910 76 GHKPLEYLDV----ISRDDIKTDILTAL--------------------SLPRLSAAPPPSLPNCI--------DIVIYAD 123 (348)
Q Consensus 76 g~tpL~~A~~----~~~~~~~~~Ll~~~--------------------~~~~~~~~~~~~~~~~~--------~lli~~~ 123 (348)
|+||||+|+. .|+.++++.|++.+ ..+... ...+.+ .+++..
T Consensus 201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-----~~~g~t~L~~a~~~~~Ll~~- 274 (327)
T 1sw6_A 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-----NGERKDSILENLDLKWIIAN- 274 (327)
T ss_dssp CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------------CHHHHHCSHHHHHHH-
T ss_pred CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-----cccCCChhHHHHHHHHHHHh-
Confidence 9999999999 89999999999763 111110 111112 222222
Q ss_pred CCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchH
Q psy3910 124 QLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTC 171 (348)
Q Consensus 124 ~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~ 171 (348)
+++..+..+.++++.+. ..++.++++.|++.|++..+.+..+..++
T Consensus 275 ~~n~~d~~G~TpLh~A~--~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL 320 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAA--RLGNISIVDALLDYGADPFIANKSGLRPV 320 (327)
T ss_dssp TTTCCCTTSCCHHHHHH--HHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred CCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 57777778888888877 77788999999999999888776555443
No 56
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1e-22 Score=155.05 Aligned_cols=100 Identities=41% Similarity=0.540 Sum_probs=97.3
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 26 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 105 (126)
T 1n0r_A 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105 (126)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCC
Q psy3910 81 EYLDVISRDDIKTDILTALS 100 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~ 100 (348)
|+|+..|+.+++++|++.|+
T Consensus 106 ~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 106 HLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHcCcHHHHHHHHHcCC
Confidence 99999999999999999874
No 57
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.89 E-value=1.1e-23 Score=181.36 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=118.6
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCChHHHHHHHcCCHHHHHHHHh---c
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPG--------------LDNDTPLHLAARDVRPALAKLLIQ---Y 65 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~--------------~~g~TpLh~A~~~g~~~~v~~Ll~---~ 65 (348)
++.+|..|+||||+||..|+.++|++|+++|+++|..+ ..|.||||+|+..|+.+++++|++ +
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 45567799999999999999999999999999999998 689999999999999999999999 9
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchH
Q psy3910 66 GADVDKRNIQGHKPLEYLDVISR---------DDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQF 136 (348)
Q Consensus 66 gad~~~~d~~g~tpL~~A~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~ 136 (348)
|++++.+|..|+||||+|+..++ .+++++|++.|++.... ....+..+..+.+++
T Consensus 166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~----------------~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD----------------TNLEALLNNDGLSPL 229 (260)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT----------------CCGGGCCCTTSCCHH
T ss_pred CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc----------------cchhhcccCCCCCHH
Confidence 99999999999999999998887 68999999887322110 001134556777777
Q ss_pred HHHHHcCCCCccceeeccccccceee
Q psy3910 137 VKTLSSGADVPIIVSTLLQSNVNILL 162 (348)
Q Consensus 137 ~~~la~~~~~~~iv~~l~~~g~~~~i 162 (348)
..+. ..++.++++.|++.|.....
T Consensus 230 ~~A~--~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 230 MMAA--KTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHHC
T ss_pred HHHH--HcCCHHHHHHHHHhCCCccc
Confidence 7777 88888999999988665443
No 58
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.89 E-value=2.6e-24 Score=188.04 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=133.8
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-CCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQG-HKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g-~tp 79 (348)
+|+|.+ +|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..| .||
T Consensus 55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~ 132 (285)
T 3kea_A 55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132 (285)
T ss_dssp GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence 356666 49999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC--------CCCCCCCCCCchhHHHHH-hcCCCCcccccCCch-HHHHHHcCCCCccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLP--------RLSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQ-FVKTLSSGADVPII 149 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~--------~~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~-~~~~la~~~~~~~i 149 (348)
||+|+..|+.+++++|++.+... +++.+...+......+++ .+...+..+..+.++ +..+. ..++.++
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~--~~~~~~~ 210 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAI--DNKDIEM 210 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHH--HHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHH--HcCCHHH
Confidence 99999999999999999998543 222223333444444444 456667777777776 77777 7778899
Q ss_pred eeeccccccceeecC
Q psy3910 150 VSTLLQSNVNILLVN 164 (348)
Q Consensus 150 v~~l~~~g~~~~iv~ 164 (348)
++.|++.|++....+
T Consensus 211 v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 211 LQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHTTSCBCSTTTT
T ss_pred HHHHHHcCCCCCCCC
Confidence 999999999887765
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=175.86 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=116.5
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy3910 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYL 83 (348)
Q Consensus 4 n~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 83 (348)
+..+..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCC----------CCCCCC--CCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccce
Q psy3910 84 DVISRDDIKTDILTALSL----------PRLSAA--PPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIV 150 (348)
Q Consensus 84 ~~~~~~~~~~~Ll~~~~~----------~~~~~~--~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv 150 (348)
+..|+.+++++|++.+.+ ++++.+ ...+...+..+++ .+...+..+..+.+.+.... .. ...
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~--~~---~~~ 169 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS--AE---FGD 169 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBC--CS---STT
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHh--hc---ccc
Confidence 999999999999987743 344444 4444444555444 34444444444433332211 22 333
Q ss_pred eeccccccceee
Q psy3910 151 STLLQSNVNILL 162 (348)
Q Consensus 151 ~~l~~~g~~~~i 162 (348)
+.+++.|.+..+
T Consensus 170 ~~ll~~ga~~~~ 181 (229)
T 2vge_A 170 ELSFREGESVTV 181 (229)
T ss_dssp BCCBCTTCEEEE
T ss_pred ccCccccccccc
Confidence 566666666433
No 60
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=1.2e-23 Score=178.97 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=107.5
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 81 (348)
|+|. +..|.||||.||..|+.++|+.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||
T Consensus 30 ~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~ 108 (239)
T 1ycs_B 30 RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108 (239)
T ss_dssp --------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 4553 367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCC-chHHHHHHcCCCCccceeeccccccce
Q psy3910 82 YLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGL-AQFVKTLSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 82 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~-~~~~~~la~~~~~~~iv~~l~~~g~~~ 160 (348)
+|+..|+.+++++|++.+++... .+..+. +++..+.+...++.++++.|++.|++.
T Consensus 109 ~A~~~~~~~~v~~Ll~~ga~~~~-----------------------~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~ 165 (239)
T 1ycs_B 109 CAASCNNVQVCKFLVESGAAVFA-----------------------MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165 (239)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-----------------------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcCCCcce-----------------------ecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence 99999999999999998744322 122222 455544223566677777777776665
Q ss_pred eec
Q psy3910 161 LLV 163 (348)
Q Consensus 161 ~iv 163 (348)
...
T Consensus 166 ~~~ 168 (239)
T 1ycs_B 166 GIM 168 (239)
T ss_dssp TTT
T ss_pred ccc
Confidence 543
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=8.6e-23 Score=164.17 Aligned_cols=131 Identities=28% Similarity=0.402 Sum_probs=118.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 117 (169)
T 2y1l_E 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeecccc
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQS 156 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~ 156 (348)
|+|+..|+.+++++|++.+.+ .+..+..+.+++..+. ..++.++++.|++.
T Consensus 118 ~~A~~~~~~~~v~~Ll~~g~~-----------------------~~~~~~~g~t~l~~A~--~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 118 HLAAMFGHLEIVEVLLKNGAD-----------------------VNAQDKFGKTAFDISI--DNGNEDLAEILQKL 168 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHcCCC-----------------------CCCcCCCCCCHHHHHH--HhCCHHHHHHHHHc
Confidence 999999999999999998732 3345567778887777 77777888877764
No 62
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.89 E-value=2.6e-23 Score=156.12 Aligned_cols=97 Identities=34% Similarity=0.443 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q psy3910 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLD 84 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 84 (348)
.+|.+|+||||+||..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCC
Q psy3910 85 VISRDDIKTDILTALSL 101 (348)
Q Consensus 85 ~~~~~~~~~~Ll~~~~~ 101 (348)
..++.+++++|++.|++
T Consensus 84 ~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp TTTCHHHHHHHHTTSSS
T ss_pred HCCCHHHHHHHHHcCCC
Confidence 99999999999998854
No 63
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=2.9e-23 Score=187.70 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=112.9
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC----------
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK---------- 71 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~---------- 71 (348)
+++..|.+|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++++.
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666666666665554
Q ss_pred ------------------------------------------CCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCC----
Q psy3910 72 ------------------------------------------RNIQGHKPLEYLDVIS--RDDIKTDILTALSLPR---- 103 (348)
Q Consensus 72 ------------------------------------------~d~~g~tpL~~A~~~~--~~~~~~~Ll~~~~~~~---- 103 (348)
.|..|.||||+|+..| +.+++++|++.+.++.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~ 171 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence 6667888888888888 8888888888875433
Q ss_pred -----CCCCCCCCCchhHHHHH-hcCC-----CCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHh
Q psy3910 104 -----LSAAPPPSLPNCIDIVI-YADQ-----LDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCI 172 (348)
Q Consensus 104 -----~~~~~~~~~~~~~~lli-~~~~-----~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~ 172 (348)
++.+...+...+..+++ .+.. ++..+..+.++++.+. ..++.++++.|++.|++....+..+...+.
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 249 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI--LINWEDVAMRFVEMGIDVNMEDNEHTVPLY 249 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH--TTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 23333334444555444 3444 6666777777777777 888889999999998888777655555444
Q ss_pred h
Q psy3910 173 A 173 (348)
Q Consensus 173 ~ 173 (348)
.
T Consensus 250 ~ 250 (364)
T 3ljn_A 250 L 250 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.89 E-value=2.9e-23 Score=178.33 Aligned_cols=138 Identities=20% Similarity=0.192 Sum_probs=116.3
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CChHHHHHHHcCCHHHHHHHHh---cCCC
Q psy3910 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLD-------------NDTPLHLAARDVRPALAKLLIQ---YGAD 68 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~-------------g~TpLh~A~~~g~~~~v~~Ll~---~gad 68 (348)
.+|..|+||||+||..|+.++|++|+++|+++|..|.. |.||||+|+..|+.+++++|++ +|+|
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~ 164 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence 45678999999999999999999999999999999886 9999999999999999999999 9999
Q ss_pred CCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHH
Q psy3910 69 VDKRNIQGHKPLEYLDV--ISRDD-------IKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKT 139 (348)
Q Consensus 69 ~~~~d~~g~tpL~~A~~--~~~~~-------~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~ 139 (348)
+|.+|..|+||||+|+. .++.+ ++++|++.|++..... ...+..+..+.+++..+
T Consensus 165 ~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~----------------~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV----------------QLEEISNHQGLTPLKLA 228 (256)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC----------------CGGGCCCTTSCCHHHHH
T ss_pred cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc----------------ccccccCCCCCCHHHHH
Confidence 99999999999999999 78888 9999998873221000 00134556677777777
Q ss_pred HHcCCCCccceeeccccccce
Q psy3910 140 LSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 140 la~~~~~~~iv~~l~~~g~~~ 160 (348)
. ..++.++++.|++.|...
T Consensus 229 ~--~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 229 A--KEGKIEIFRHILQREFSG 247 (256)
T ss_dssp H--HTTCHHHHHHHHHHHHHH
T ss_pred H--HhCCHHHHHHHHhCCCCC
Confidence 7 788889999999886554
No 65
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.89 E-value=6.7e-23 Score=152.61 Aligned_cols=93 Identities=28% Similarity=0.362 Sum_probs=86.5
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 82 (348)
++..|.+|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q psy3910 83 LDVISRDDIKTDI 95 (348)
Q Consensus 83 A~~~~~~~~~~~L 95 (348)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999876
No 66
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=5.8e-23 Score=190.25 Aligned_cols=164 Identities=24% Similarity=0.265 Sum_probs=135.2
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 38 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L 117 (437)
T 1n11_A 38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117 (437)
T ss_dssp CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCC---------CCCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPR---------LSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIV 150 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~---------~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv 150 (348)
|+|+..|+.++++.|++.+.... ++.+...+...+..+++ .+...+.....+.+++..+. ..++.+++
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v 195 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV--HHNNLDIV 195 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHH--HTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH--HcCCHHHH
Confidence 99999999999999999875432 22223333344444444 45566666677777777777 77788999
Q ss_pred eeccccccceeecCCC
Q psy3910 151 STLLQSNVNILLVNGT 166 (348)
Q Consensus 151 ~~l~~~g~~~~iv~~~ 166 (348)
+.|++.|.+....+..
T Consensus 196 ~~Ll~~g~~~~~~~~~ 211 (437)
T 1n11_A 196 KLLLPRGGSPHSPAWN 211 (437)
T ss_dssp HHHGGGTCCSCCCCTT
T ss_pred HHHHhCCCCCCCcCCC
Confidence 9999887776554433
No 67
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=6.2e-23 Score=178.54 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=136.0
Q ss_pred CCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVK-DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~-d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+++|.+ |..|+||||+||..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108 (285)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBH
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCH
Confidence 467777 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCC-------------------CCCCCCchhHHHHHh--cCCCCcccccCCchHHH
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLSA-------------------APPPSLPNCIDIVIY--ADQLDKTQTSGLAQFVK 138 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~~-------------------~~~~~~~~~~~lli~--~~~~~~~~~~~~~~~~~ 138 (348)
||+|+..|+.+++++|++.+....... +...+......+++. +...+..+..+.+++..
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 188 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 999999999999999999986654431 122223344444443 55666666777788877
Q ss_pred HHHcCCCC----ccceeeccccccceeecCCCCCc
Q psy3910 139 TLSSGADV----PIIVSTLLQSNVNILLVNGTPER 169 (348)
Q Consensus 139 ~la~~~~~----~~iv~~l~~~g~~~~iv~~~~~~ 169 (348)
++ ..+. ..+++.|++.|++....+..+..
T Consensus 189 a~--~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 189 AL--LSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp HH--HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred HH--HccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 77 4444 67888889988887776654444
No 68
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=1.4e-23 Score=189.86 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=139.0
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCC------------------------------------------
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNV------------------------------------------ 38 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~------------------------------------------ 38 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|++++.
T Consensus 44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 123 (364)
T 3ljn_A 44 VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123 (364)
T ss_dssp CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence 58999999999999999999999999999999998876
Q ss_pred ----------CCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Q psy3910 39 ----------PGLDNDTPLHLAARDV--RPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSL----- 101 (348)
Q Consensus 39 ----------~~~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~----- 101 (348)
.|..|.||||+|+..| +.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+..
T Consensus 124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 203 (364)
T 3ljn_A 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR 203 (364)
T ss_dssp CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCC
T ss_pred HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence 6668999999999999 99999999999999999999999999999999999999999987644
Q ss_pred ---------CCCCCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecC
Q psy3910 102 ---------PRLSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVN 164 (348)
Q Consensus 102 ---------~~~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~ 164 (348)
++++.+...+...+..+++ .+.+.+..+..+.+++..+. ..++.++++.|++.|....+..
T Consensus 204 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV--RAAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH--HTCCHHHHHHHHHHSCHHHHHT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HhChHHHHHHHHHcCCchhhhc
Confidence 4555555566666666665 46777777778888888777 7888899999999866654433
No 69
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.5e-23 Score=166.29 Aligned_cols=103 Identities=28% Similarity=0.357 Sum_probs=95.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh-HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDT-PLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~T-pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+|+ .|+.++|++|+++|+++|.+|..|+| |||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 36 ~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 114 (156)
T 1bi7_B 36 ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114 (156)
T ss_dssp CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCH
T ss_pred CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 578999999999999986 99999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCC
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRL 104 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~ 104 (348)
||+|+..|+.+++++|++.|+++..
T Consensus 115 l~~A~~~~~~~~v~~Ll~~ga~~~~ 139 (156)
T 1bi7_B 115 VDLAEELGHRDVARYLRAAAGGTRG 139 (156)
T ss_dssp HHHHHHHTCHHHHHHHSSCC-----
T ss_pred HHHHHHhCHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999855433
No 70
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.89 E-value=1.9e-24 Score=183.53 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=121.2
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGA----LVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 4 n~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga----~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+.+|.+|+||||+||..|+.++++.|++.+. ++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 4679999999999999999999999998765 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVN 159 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~ 159 (348)
||+|+..|+.+++++|++.+..+.... .....+..+.++++.+. ..++.++++.|++.|++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~-----------------~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~ 142 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHS-----------------ILKATNYNGHTCLHLAS--IHGYLGIVELLVSLGAD 142 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSC-----------------GGGCCCTTCCCHHHHHH--HTTCHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHH-----------------HhhccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCC
Confidence 999999999999999999985533211 12334456677777777 77888999999999988
Q ss_pred eeecCC-CCCchHh
Q psy3910 160 ILLVNG-TPERTCI 172 (348)
Q Consensus 160 ~~iv~~-~~~~~~~ 172 (348)
....+. .+...+.
T Consensus 143 ~~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 143 VNAQEPCNGRTALH 156 (236)
T ss_dssp TTCCCTTTCCCHHH
T ss_pred CCCCCCCCCCCHHH
Confidence 887765 4444433
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=1.3e-22 Score=160.41 Aligned_cols=95 Identities=28% Similarity=0.401 Sum_probs=92.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 58 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 137 (153)
T 1awc_B 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137 (153)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH
Q psy3910 81 EYLDVISRDDIKTDI 95 (348)
Q Consensus 81 ~~A~~~~~~~~~~~L 95 (348)
|+|+..|+.+++++|
T Consensus 138 ~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 138 DISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999886
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.89 E-value=1.3e-22 Score=160.79 Aligned_cols=97 Identities=32% Similarity=0.501 Sum_probs=94.6
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||
T Consensus 59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l 137 (156)
T 1bd8_A 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL 137 (156)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHc
Q psy3910 81 EYLDVISRDDIKTDILTA 98 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~ 98 (348)
|+|+..|+.+++++|+++
T Consensus 138 ~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 138 ELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHSCCHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHhh
Confidence 999999999999999875
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.8e-24 Score=181.56 Aligned_cols=149 Identities=21% Similarity=0.143 Sum_probs=116.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN-IQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tp 79 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|+||
T Consensus 45 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tp 124 (229)
T 2vge_A 45 NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124 (229)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCT
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999986 699999
Q ss_pred HHHH--HHcCCHHHHHHHHHcCCCCCCC---------CCCCCCCchhHHHHHhcCCC--CcccccCCchHHHHHHcCCCC
Q psy3910 80 LEYL--DVISRDDIKTDILTALSLPRLS---------AAPPPSLPNCIDIVIYADQL--DKTQTSGLAQFVKTLSSGADV 146 (348)
Q Consensus 80 L~~A--~~~~~~~~~~~Ll~~~~~~~~~---------~~~~~~~~~~~~lli~~~~~--~~~~~~~~~~~~~~la~~~~~ 146 (348)
||+| +..|+.+++++|++.+++.... ...... ....++..+... ...+..+.+++..+ ...++
T Consensus 125 L~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~--~~~~ll~~ga~~~~~~~d~~G~TpL~~A--~~~g~ 200 (229)
T 2vge_A 125 FEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF--GDELSFREGESVTVLRRDGPEETDWWWA--ALHGQ 200 (229)
T ss_dssp GGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS--TTBCCBCTTCEEEEEESSCTTCSSEEEE--EETTE
T ss_pred HHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc--ccccCccccccccccccCCCcccHHHHH--HHcCC
Confidence 9999 9999999999999987443322 111111 111122233442 23344455555444 47777
Q ss_pred ccceeec
Q psy3910 147 PIIVSTL 153 (348)
Q Consensus 147 ~~iv~~l 153 (348)
.++++..
T Consensus 201 ~~~v~~~ 207 (229)
T 2vge_A 201 EGYVPRN 207 (229)
T ss_dssp EEEEEGG
T ss_pred cceeehh
Confidence 7777653
No 74
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.3e-23 Score=178.56 Aligned_cols=102 Identities=26% Similarity=0.284 Sum_probs=98.7
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|++.++..|.||||+|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|+|.+|..|.|||
T Consensus 110 a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~L 189 (269)
T 4b93_B 110 ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189 (269)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCC
Q psy3910 81 EYLDVISRDDIKTDILTALSLP 102 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~ 102 (348)
|+|+..|+.+++++|++.|+++
T Consensus 190 h~A~~~g~~~~v~~Ll~~Gad~ 211 (269)
T 4b93_B 190 HEAVIEKHVFVVELLLLHGASV 211 (269)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHCCCCC
Confidence 9999999999999999998543
No 75
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=1.3e-23 Score=176.72 Aligned_cols=135 Identities=19% Similarity=0.148 Sum_probs=106.4
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHH
Q psy3910 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY-GADVDKRNIQGHKPLEYL 83 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A 83 (348)
..|..|.||||+||..|+.++|+.|++.|+++|.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 3466789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeec
Q psy3910 84 DVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLV 163 (348)
Q Consensus 84 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv 163 (348)
+..|+.+++++|++.+++. +..+..+.+++..+. ..+..++++.+.+.++...+.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~-----------------------~~~~~~g~t~l~~A~--~~~~~~~l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGART-----------------------DLRNIEKKLAFDMAT--NAACASLLKKKQGTDAVRTLS 202 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCS-----------------------CCCCTTSCCHHHHCC--SHHHHHHHC------------
T ss_pred HHcCCHHHHHHHHHcCCCC-----------------------ccccCCCCCHHHHhc--chhHHHHHHHHhccchhhhcc
Confidence 9999999999999997433 233444555555544 666667777777776655544
Q ss_pred C
Q psy3910 164 N 164 (348)
Q Consensus 164 ~ 164 (348)
+
T Consensus 203 ~ 203 (222)
T 3ehr_A 203 N 203 (222)
T ss_dssp -
T ss_pred c
Confidence 3
No 76
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.88 E-value=5.3e-23 Score=178.48 Aligned_cols=137 Identities=26% Similarity=0.277 Sum_probs=116.8
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--------------CCChHHHHHHHcCCHHHHHHHHh---cCC
Q psy3910 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL--------------DNDTPLHLAARDVRPALAKLLIQ---YGA 67 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~--------------~g~TpLh~A~~~g~~~~v~~Ll~---~ga 67 (348)
.+|..|+||||+||..|+.++|++|+++|+++|..+. .|.||||+|+..|+.+++++|++ +|+
T Consensus 96 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 3678999999999999999999999999999999987 79999999999999999999999 999
Q ss_pred CCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHH
Q psy3910 68 DVDKRNIQGHKPLEYLDVISR---------DDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVK 138 (348)
Q Consensus 68 d~~~~d~~g~tpL~~A~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~ 138 (348)
+++.+|..|+||||+|+..|+ .+++++|++.+.+..... ...+..+..+.+++..
T Consensus 176 d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~----------------~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL----------------KLEEITNRKGLTPLAL 239 (273)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC----------------CGGGCCCTTSCCHHHH
T ss_pred CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc----------------ccccccCCCCCCHHHH
Confidence 999999999999999999988 789999998873211100 0012345667777777
Q ss_pred HHHcCCCCccceeeccccccc
Q psy3910 139 TLSSGADVPIIVSTLLQSNVN 159 (348)
Q Consensus 139 ~la~~~~~~~iv~~l~~~g~~ 159 (348)
+. ..++.++++.|++.|+.
T Consensus 240 A~--~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 240 AA--SSGKIGVLAYILQREIH 258 (273)
T ss_dssp HH--HTTCHHHHHHHHHHHTC
T ss_pred HH--HhChHHHHHHHHHCCCC
Confidence 77 88889999999999883
No 77
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.88 E-value=7e-23 Score=172.63 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=129.6
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCC
Q psy3910 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAG--ALVNV-PGLDNDTPLHLAARDVRPALAKLLIQYG--ADVDKRNIQGHK 78 (348)
Q Consensus 4 n~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~g--a~~n~-~~~~g~TpLh~A~~~g~~~~v~~Ll~~g--ad~~~~d~~g~t 78 (348)
+.+|..|+||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+..|+.+++++|+++| ++++..|..|.|
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t 109 (228)
T 2dzn_A 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 109 (228)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCC
Confidence 457889999999999999999999999999 55555 7788999999999999999999999998 888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC---------CCCCCCCCCchhHHHHHh-c-CCCCcccccCCchHHHHHHcCCCCc
Q psy3910 79 PLEYLDVISRDDIKTDILTALSLPR---------LSAAPPPSLPNCIDIVIY-A-DQLDKTQTSGLAQFVKTLSSGADVP 147 (348)
Q Consensus 79 pL~~A~~~~~~~~~~~Ll~~~~~~~---------~~~~~~~~~~~~~~lli~-~-~~~~~~~~~~~~~~~~~la~~~~~~ 147 (348)
|||+|+..|+.+++++|++.+.... ++.+...+......+++. + ...+..+..+.+++..+. ..++.
T Consensus 110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~--~~~~~ 187 (228)
T 2dzn_A 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL--AEGHG 187 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH--HTTCH
T ss_pred HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH--HcCCH
Confidence 9999999999999999998875443 223333344445555543 3 556666677777777777 77788
Q ss_pred cceeecc-ccccceeecCCCCCchH
Q psy3910 148 IIVSTLL-QSNVNILLVNGTPERTC 171 (348)
Q Consensus 148 ~iv~~l~-~~g~~~~iv~~~~~~~~ 171 (348)
++++.|+ +.|++....+..+....
T Consensus 188 ~~v~~Ll~~~ga~~~~~~~~g~t~l 212 (228)
T 2dzn_A 188 DAAVLLVEKYGAEYDLVDNKGAKAE 212 (228)
T ss_dssp HHHHHHHHHHCCCSCCBCTTSCBGG
T ss_pred HHHHHHHHhcCCCCCccCCCCCcHH
Confidence 8999988 77888877765554443
No 78
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=3.7e-23 Score=157.23 Aligned_cols=91 Identities=29% Similarity=0.345 Sum_probs=85.2
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 31 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 110 (123)
T 3aaa_C 31 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110 (123)
T ss_dssp CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHH
Q psy3910 81 EYLDVISRDDI 91 (348)
Q Consensus 81 ~~A~~~~~~~~ 91 (348)
|+|...+..++
T Consensus 111 ~~A~~~~~~~l 121 (123)
T 3aaa_C 111 EATDNQAIKAL 121 (123)
T ss_dssp HHCCCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 99965444443
No 79
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=1.2e-22 Score=176.54 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=95.2
Q ss_pred CCCCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 3 PNVKDNAGWTPLHDAVSI---GNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~---g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
++..|..|+||||+||.. |+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|.||
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 241 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCH
Confidence 566689999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC
Q psy3910 80 LEYLDVISRDDIKTDILTALSL 101 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~ 101 (348)
||+|+..|+.+++++|++.++.
T Consensus 242 L~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 242 LDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999854
No 80
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.88 E-value=1.9e-22 Score=162.59 Aligned_cols=99 Identities=22% Similarity=0.303 Sum_probs=97.0
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 139 (172)
T 3v30_A 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139 (172)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcC
Q psy3910 81 EYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~ 99 (348)
|+|+..|+.+++++|++++
T Consensus 140 ~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 140 DLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHH
Confidence 9999999999999999887
No 81
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.88 E-value=1e-22 Score=182.55 Aligned_cols=170 Identities=24% Similarity=0.248 Sum_probs=140.4
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC-------
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN------- 73 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d------- 73 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 82 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l 161 (351)
T 3utm_A 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161 (351)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcch
Confidence 5889999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred -----------------------------------------------CCCCCHHHHHHHc---CCHHHHHHHHHcCCCC-
Q psy3910 74 -----------------------------------------------IQGHKPLEYLDVI---SRDDIKTDILTALSLP- 102 (348)
Q Consensus 74 -----------------------------------------------~~g~tpL~~A~~~---~~~~~~~~Ll~~~~~~- 102 (348)
..|.||||+|+.. +..+++++|++.+...
T Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~ 241 (351)
T 3utm_A 162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241 (351)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT
T ss_pred HHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC
Confidence 4567899999988 5589999999887544
Q ss_pred --------CCCCCCCCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHh
Q psy3910 103 --------RLSAAPPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCI 172 (348)
Q Consensus 103 --------~~~~~~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~ 172 (348)
+++.+...+...+..+++ .+...+..+..+.+++..+. ..++.++++.|++.|++..+.+..+...+.
T Consensus 242 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~--~~~~~~~v~~Ll~~gad~~~~~~~g~tal~ 318 (351)
T 3utm_A 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA--LAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318 (351)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence 333334444445555544 46677777778888888877 778889999999999998887766555443
No 82
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=2.6e-22 Score=174.54 Aligned_cols=168 Identities=18% Similarity=0.154 Sum_probs=137.0
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCC--------
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKR-------- 72 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-------- 72 (348)
++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~ 142 (285)
T 1wdy_A 63 ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142 (285)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHH
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC---------CCCCCCC----chhHHHH-HhcCCCCcccccCCch
Q psy3910 73 --NIQGHKPLEYLDVISRDDIKTDILTA-LSLPRLS---------AAPPPSL----PNCIDIV-IYADQLDKTQTSGLAQ 135 (348)
Q Consensus 73 --d~~g~tpL~~A~~~~~~~~~~~Ll~~-~~~~~~~---------~~~~~~~----~~~~~ll-i~~~~~~~~~~~~~~~ 135 (348)
+..|.||||+|+..|+.++++.|++. +...... .+...+. .....++ -.+...+..+..+.++
T Consensus 143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred hhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 78899999999999999999999987 5333221 1111112 2233333 3456677777778888
Q ss_pred HHHHHHcCCCCccceeeccc-cccceeecCCCCCch
Q psy3910 136 FVKTLSSGADVPIIVSTLLQ-SNVNILLVNGTPERT 170 (348)
Q Consensus 136 ~~~~la~~~~~~~iv~~l~~-~g~~~~iv~~~~~~~ 170 (348)
+..+. ..++.++++.|++ .|++....+..+...
T Consensus 223 L~~A~--~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~ 256 (285)
T 1wdy_A 223 LILAV--EKKHLGLVQRLLEQEHIEINDTDSDGKTA 256 (285)
T ss_dssp HHHHH--HTTCHHHHHHHHHSSSCCTTCCCTTSCCH
T ss_pred HHHHH--HcCCHHHHHHHHhccCCCccccCCCCCcH
Confidence 87777 7888899999998 778777766554443
No 83
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.88 E-value=1.2e-22 Score=162.54 Aligned_cols=98 Identities=39% Similarity=0.539 Sum_probs=94.2
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 145 (165)
T 3twr_A 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145 (165)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG
T ss_pred CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcC
Q psy3910 81 EYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~ 99 (348)
|+|+. ++.+++++|++.+
T Consensus 146 ~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 146 DLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp GGSCT-TCHHHHHHHHTC-
T ss_pred HhHhc-CChHHHHHHhhcc
Confidence 99877 9999999999876
No 84
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.88 E-value=1.7e-22 Score=170.88 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=121.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC-----CCCCCCCCCHHHH
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEA-GALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV-----DKRNIQGHKPLEY 82 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~-ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-----~~~d~~g~tpL~~ 82 (348)
.|+||||+||..|+.++|+.|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 589999999999999999999998 9999999999999999999999999999999999987 7788899999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCC----------------------CCCCCchhHHHHH-hcCCCCcccccCCchHHHH
Q psy3910 83 LDVISRDDIKTDILTALSLPRLSAA----------------------PPPSLPNCIDIVI-YADQLDKTQTSGLAQFVKT 139 (348)
Q Consensus 83 A~~~~~~~~~~~Ll~~~~~~~~~~~----------------------~~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~ 139 (348)
|+..|+.+++++|++.+........ ...+......+++ .+...+..+..+.++++.+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999865543221 1112223333333 4566666667777777777
Q ss_pred HHcCCCCccce----eeccccccce
Q psy3910 140 LSSGADVPIIV----STLLQSNVNI 160 (348)
Q Consensus 140 la~~~~~~~iv----~~l~~~g~~~ 160 (348)
. ..++.+++ +.|++.|++.
T Consensus 162 ~--~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 162 I--LQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp H--TCSCHHHHHHHHHHHHHTTCSC
T ss_pred H--HcCChHHHHHHHHHHHhcCCch
Confidence 6 66666766 7777777765
No 85
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.88 E-value=6.2e-23 Score=180.24 Aligned_cols=98 Identities=30% Similarity=0.387 Sum_probs=94.9
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 64 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l 143 (299)
T 1s70_B 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143 (299)
T ss_dssp CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHc
Q psy3910 81 EYLDVISRDDIKTDILTA 98 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~ 98 (348)
|+|+..++.++++.++..
T Consensus 144 ~~A~~~~~~~~~~~ll~~ 161 (299)
T 1s70_B 144 DIAEEEAMEELLQNEVNR 161 (299)
T ss_dssp HHCCSHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHhh
Confidence 999999999999988864
No 86
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.88 E-value=5.4e-22 Score=177.44 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=116.5
Q ss_pred CCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------CCCCCCChH
Q psy3910 1 MNPNVKDN-AGWTPLHDAVSIGNESVVRLLLEAGALVN---------------------------------VPGLDNDTP 46 (348)
Q Consensus 1 adin~~d~-~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n---------------------------------~~~~~g~Tp 46 (348)
||||.+|. .|+||||+||..|+.++|++||++|++++ ..|..|+||
T Consensus 49 advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~ 128 (337)
T 4g8k_A 49 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA 128 (337)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBH
T ss_pred CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCH
Confidence 68898876 49999999999999999999999988654 456778999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCC-------
Q psy3910 47 LHLAARDVRPALAKLLIQYGADVDKR----------NIQGHKPLEYLDVISRDDIKTDILTA-LSLPRLSAAP------- 108 (348)
Q Consensus 47 Lh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~tpL~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~------- 108 (348)
||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++. +.........
T Consensus 129 l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~ 208 (337)
T 4g8k_A 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred HHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence 99999999999999999999988764 34689999999999999999999964 5443222110
Q ss_pred ------CCCCchhHHHHH-hcCCCCcccccCCchHHHHHHcCCCCccceeecccc-ccceeecCCCC
Q psy3910 109 ------PPSLPNCIDIVI-YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQS-NVNILLVNGTP 167 (348)
Q Consensus 109 ------~~~~~~~~~lli-~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~-g~~~~iv~~~~ 167 (348)
.........+++ .+..++..+..+.++++.+. ..+..++++.|+.. |++....+..+
T Consensus 209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~--~~~~~~~v~~Ll~~~~~~vn~~d~~G 273 (337)
T 4g8k_A 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV--EKKHLGLVQRLLEQEHIEINDTDSDG 273 (337)
T ss_dssp HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH--HTTCHHHHHHHHTSTTCCTTCBCTTS
T ss_pred HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HhhhhHHHHHHHHhcCCcccCcCCCC
Confidence 111112223332 35555555666666666555 56666666666553 45555544443
No 87
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.87 E-value=3.6e-22 Score=164.95 Aligned_cols=142 Identities=22% Similarity=0.251 Sum_probs=119.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q psy3910 7 DNAGWTPLHDAVSIGNESVVRLLLEAGA-LVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDV 85 (348)
Q Consensus 7 d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga-~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 85 (348)
+..+.||||.||..|+.+.|+.|++.+. ++|..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 4679999999999999999999999865 999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccc-cceeecC
Q psy3910 86 ISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSN-VNILLVN 164 (348)
Q Consensus 86 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g-~~~~iv~ 164 (348)
.|+.++++.|++.++ ...+..+..+.+++..+. ..++.++++.|++.| ++....+
T Consensus 82 ~~~~~~~~~Ll~~~~----------------------~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~ 137 (201)
T 3hra_A 82 QGRTEILAYMLKHAT----------------------PDLNKHNRYGGNALIPAA--EKGHIDNVKLLLEDGREDIDFQN 137 (201)
T ss_dssp TTCHHHHHHHHHHSC----------------------CCTTCCCTTSCCSHHHHH--HTTCHHHHHHHHHHCCCCTTCCC
T ss_pred cCCHHHHHHHHhccC----------------------cccccccCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCcCCCC
Confidence 999999999996642 123334455667777777 777889999999987 6665555
Q ss_pred CCCCchHh
Q psy3910 165 GTPERTCI 172 (348)
Q Consensus 165 ~~~~~~~~ 172 (348)
..+...+.
T Consensus 138 ~~g~t~L~ 145 (201)
T 3hra_A 138 DFGYTALI 145 (201)
T ss_dssp TTSCCHHH
T ss_pred CCCCCHHH
Confidence 54444443
No 88
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=175.13 Aligned_cols=142 Identities=23% Similarity=0.230 Sum_probs=120.0
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHH-----HcCCHHHHHHHHhcCCCCCCCCCCC
Q psy3910 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGA-LVNVPGLDNDTPLHLAA-----RDVRPALAKLLIQYGADVDKRNIQG 76 (348)
Q Consensus 3 in~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga-~~n~~~~~g~TpLh~A~-----~~g~~~~v~~Ll~~gad~~~~d~~g 76 (348)
+|.+|.+|+||||+||..|+.++|++|+++|+ ++|..|..|.||||+|+ ..++.+++++|++.|++.+..|..|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG 183 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence 68999999999999999999999999999998 99999999999999999 6688999999999999999999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccc-
Q psy3910 77 HKPLEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQ- 155 (348)
Q Consensus 77 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~- 155 (348)
.||||+|+..|+.+++++|++.|++. +..+..+.+++..+. ..++.++++.|++
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~-----------------------n~~d~~G~TpLh~A~--~~g~~~iv~~Ll~~ 238 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADV-----------------------NVQDDDGSTALMCAC--EHGHKEIAGLLLAV 238 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TCCCTTSCCHHHHHH--HHTCHHHHHHHHTS
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCC-----------------------CCCCCCCCCHHHHHH--HCCCHHHHHHHHhc
Confidence 99999999999999999999987432 233455666666666 6666778888877
Q ss_pred cccceeecCCCCCc
Q psy3910 156 SNVNILLVNGTPER 169 (348)
Q Consensus 156 ~g~~~~iv~~~~~~ 169 (348)
.|++....+..+..
T Consensus 239 ~gad~~~~d~~g~T 252 (276)
T 4hbd_A 239 PSCDISLTDRDGST 252 (276)
T ss_dssp TTCCTTCCCTTSCC
T ss_pred CCCCCcCcCCCCCC
Confidence 67777666554444
No 89
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=6.1e-23 Score=167.47 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=92.8
Q ss_pred CCCCCCCCCCChHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcC-----CHHHHHHHHh-cCC
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGN------ESVVRLLLEAGALVNVPGLDND-TPLHLAARDV-----RPALAKLLIQ-YGA 67 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~------~~~v~~Ll~~ga~~n~~~~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~ga 67 (348)
||||.+|..|+||||+|+..|+ .++|++|+++||++|.+|..|+ ||||+|+..+ +.+++++|++ +|+
T Consensus 66 advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga 145 (186)
T 3t8k_A 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL 145 (186)
T ss_dssp CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence 6899999999999999999987 6889999999999999999999 9999999955 3579999999 999
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy3910 68 DVDKRNIQGHKPLEYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 68 d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~ 99 (348)
|++.+|..|+||||+|+..|+.+++++|.+..
T Consensus 146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=3.7e-23 Score=160.30 Aligned_cols=99 Identities=44% Similarity=0.662 Sum_probs=92.0
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 34 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl 113 (137)
T 3c5r_A 34 SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113 (137)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcC
Q psy3910 81 EYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~ 99 (348)
|+|+..+..+++++|.+..
T Consensus 114 ~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 114 DYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp GGCCCHHHHHHHSCC----
T ss_pred HHHhhccHHHHHhhccccc
Confidence 9999999988888777654
No 91
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.87 E-value=5.4e-23 Score=186.56 Aligned_cols=167 Identities=20% Similarity=0.155 Sum_probs=131.5
Q ss_pred CCCCCCC-CCCChHHHHHHHcCCHHHHHHHH--------HCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy3910 1 MNPNVKD-NAGWTPLHDAVSIGNESVVRLLL--------EAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71 (348)
Q Consensus 1 adin~~d-~~G~T~Lh~A~~~g~~~~v~~Ll--------~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 71 (348)
+++|.+| ..|+||||+||..|+.++|++|+ +.|+++|.+|..|.||||+|+..|+.++|++|+++|++++.
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 194 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc
Confidence 3688898 79999999999999998887776 88999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcC------------CCCCCCCCCCCC---CchhHHHHH-hcCCCCc--------
Q psy3910 72 RNIQGHKPLEYLDVISRDDIKTDILTAL------------SLPRLSAAPPPS---LPNCIDIVI-YADQLDK-------- 127 (348)
Q Consensus 72 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~------------~~~~~~~~~~~~---~~~~~~lli-~~~~~~~-------- 127 (348)
.|..|.||||+|+..|+.+++++|++.+ +.++++.+...+ ......+++ .+...+.
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 274 (373)
T 2fo1_E 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274 (373)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence 9999999999999999999999999765 222232222222 233333333 3444443
Q ss_pred ccccCCchHHHHHHcCCCCccceeeccccc-cceeecCCCCCc
Q psy3910 128 TQTSGLAQFVKTLSSGADVPIIVSTLLQSN-VNILLVNGTPER 169 (348)
Q Consensus 128 ~~~~~~~~~~~~la~~~~~~~iv~~l~~~g-~~~~iv~~~~~~ 169 (348)
.+..+.++++.+. ..++.++++.|++.+ ++....+..+..
T Consensus 275 ~d~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 275 EKYKGRTALHYAA--QVSNMPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp SSCCCCCTHHHHH--SSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred ccccCCCHHHHHH--HhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence 3446677777777 889999999999875 666665544444
No 92
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.87 E-value=4.4e-22 Score=167.72 Aligned_cols=138 Identities=24% Similarity=0.264 Sum_probs=106.4
Q ss_pred CCCC-CCCCCChHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy3910 2 NPNV-KDNAGWTPLHDAVSIGNESVVRLLLEAG--ALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHK 78 (348)
Q Consensus 2 din~-~d~~G~T~Lh~A~~~g~~~~v~~Ll~~g--a~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 78 (348)
+++. .|..|+||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 142 (228)
T 2dzn_A 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142 (228)
T ss_dssp CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCC
Confidence 4455 7889999999999999999999999998 888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcC-CCCC---------CCCCCCCCCchhHHHHH--hcCCCCcccccCCchHHHH
Q psy3910 79 PLEYLDVISRDDIKTDILTAL-SLPR---------LSAAPPPSLPNCIDIVI--YADQLDKTQTSGLAQFVKT 139 (348)
Q Consensus 79 pL~~A~~~~~~~~~~~Ll~~~-~~~~---------~~~~~~~~~~~~~~lli--~~~~~~~~~~~~~~~~~~~ 139 (348)
|||+|+..|+.+++++|++.+ .... ++.+...+...+..+++ .+...+..+..+.+++..+
T Consensus 143 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A 215 (228)
T 2dzn_A 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence 999999999999999999887 3322 22222333334444443 3555555555555555544
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=175.36 Aligned_cols=99 Identities=22% Similarity=0.231 Sum_probs=94.9
Q ss_pred CCCCC------CCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy3910 1 MNPNV------KDNAGWTPLHDAVSI---GNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71 (348)
Q Consensus 1 adin~------~d~~G~T~Lh~A~~~---g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 71 (348)
+|+|. .|..|+||||+||.. |+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|||++.
T Consensus 175 ~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 254 (301)
T 2b0o_E 175 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 254 (301)
T ss_dssp CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSC
T ss_pred CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 46666 699999999999997 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy3910 72 RNIQGHKPLEYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 72 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~ 99 (348)
+|..|.||||+|+..|+.+++++|++.+
T Consensus 255 ~d~~G~TpL~~A~~~~~~~iv~~Ll~~g 282 (301)
T 2b0o_E 255 VNEAGETALDIARKKHHKECEELLEQAQ 282 (301)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 9999999999999999999999999887
No 94
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=164.58 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=124.6
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL-DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC 112 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 47888888999999999999999999999999988885544 48899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCC---------C-CCCCchhHHHH-HhcCCCCcccc-cCCchHHHHHHcCCCCc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLSAA---------P-PPSLPNCIDIV-IYADQLDKTQT-SGLAQFVKTLSSGADVP 147 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~---------~-~~~~~~~~~ll-i~~~~~~~~~~-~~~~~~~~~la~~~~~~ 147 (348)
||+|+..|+.++++.|++.+........ . .........++ ..+...+.... .+.+++..+. ..++.
T Consensus 113 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~--~~~~~ 190 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV--LAGNT 190 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH--HHTCH
T ss_pred HHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHH--HcCCH
Confidence 9999999999999999988754433211 1 11112222222 23444554444 5667777666 77778
Q ss_pred cceeeccccccceeecCCCCCc
Q psy3910 148 IIVSTLLQSNVNILLVNGTPER 169 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~ 169 (348)
++++.|++.|++....+..+..
T Consensus 191 ~~v~~Ll~~g~~~~~~~~~g~t 212 (240)
T 3eu9_A 191 TVISLLLEAGANVDAQNIKGES 212 (240)
T ss_dssp HHHHHHHHHTCCTTCBCTTSCB
T ss_pred HHHHHHHHcCCCCCCcCCCCCC
Confidence 8899998888887776654444
No 95
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.87 E-value=9.6e-22 Score=159.54 Aligned_cols=140 Identities=20% Similarity=0.195 Sum_probs=120.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Q psy3910 8 NAGWTPLHDAVSIGNESVVRLLLEA-GALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVI 86 (348)
Q Consensus 8 ~~G~T~Lh~A~~~g~~~~v~~Ll~~-ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 86 (348)
.++.|+||.||..|+.++|+.|++. +.++|..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4688999999999999999999998 788999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCC
Q psy3910 87 SRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGT 166 (348)
Q Consensus 87 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~ 166 (348)
|+.+++++|++.+.. .+..+..+.++++.+. ..++.++++.|++.|++....+..
T Consensus 83 ~~~~~v~~Ll~~g~~-----------------------~~~~d~~g~t~L~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~ 137 (179)
T 3f6q_A 83 GHRDIVQKLLQYKAD-----------------------INAVNEHGNVPLHYAC--FWGQDQVAEDLVANGALVSICNKY 137 (179)
T ss_dssp TCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCSSBCCTT
T ss_pred CCHHHHHHHHHcCCC-----------------------CCccCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCcchhccC
Confidence 999999999998743 2334456677777777 778889999999999998887766
Q ss_pred CCchHh
Q psy3910 167 PERTCI 172 (348)
Q Consensus 167 ~~~~~~ 172 (348)
+..++.
T Consensus 138 g~tpl~ 143 (179)
T 3f6q_A 138 GEMPVD 143 (179)
T ss_dssp SCCGGG
T ss_pred CCCcHH
Confidence 555444
No 96
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.87 E-value=8.8e-22 Score=171.09 Aligned_cols=98 Identities=28% Similarity=0.263 Sum_probs=74.2
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQ-YGADVDKRNIQGHKPL 80 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL 80 (348)
+++..|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+|||
T Consensus 175 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL 254 (276)
T 4hbd_A 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL 254 (276)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH
Confidence 455666677777777777777777777777777777777777777777777777777777777 6777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHcC
Q psy3910 81 EYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~ 99 (348)
|+|+..|+.+++++|+++.
T Consensus 255 ~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 255 MVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhcc
Confidence 7777777777777777664
No 97
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=7.5e-22 Score=185.60 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCCCCC------CCCCChHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy3910 1 MNPNVK------DNAGWTPLHDAVS---IGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71 (348)
Q Consensus 1 adin~~------d~~G~T~Lh~A~~---~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 71 (348)
+|+|.+ |..|+||||+||. .|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++||++|||++.
T Consensus 156 ~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~ 235 (497)
T 3lvq_E 156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 235 (497)
T ss_dssp CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSC
T ss_pred ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 467766 8899999999977 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy3910 72 RNIQGHKPLEYLDVISRDDIKTDILTALSLPRL 104 (348)
Q Consensus 72 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~ 104 (348)
+|..|+||||+|+..|+.+++++|++.|+++..
T Consensus 236 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 236 VNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999966543
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=8.4e-22 Score=160.53 Aligned_cols=97 Identities=22% Similarity=0.187 Sum_probs=84.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHH
Q psy3910 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN-IQGHKPLEYLDV 85 (348)
Q Consensus 7 d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~~A~~ 85 (348)
|..|+||||+||..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+| ..|+||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 5578899999999999999999988 88888888889999999999999999999999999988887 788999999999
Q ss_pred cCCHHHHHHHHHcCCCCCC
Q psy3910 86 ISRDDIKTDILTALSLPRL 104 (348)
Q Consensus 86 ~~~~~~~~~Ll~~~~~~~~ 104 (348)
.|+.+++++|++.+.++..
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~ 138 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEV 138 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTC
T ss_pred cCcHHHHHHHHHcCCCCcC
Confidence 9999999999988865543
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.3e-21 Score=166.88 Aligned_cols=92 Identities=23% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcC
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN-IQGHKPLEYLDVIS 87 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~~A~~~~ 87 (348)
.|+||||+||..|+.++|+.|++ |+++|.+|..|+||||+|+..|+.++|++|+++|++++.+| ..|.||||+|+..|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 45555555555555555555555 55555555555555555555555555555555555555554 44555555555555
Q ss_pred CHHHHHHHHHcCCC
Q psy3910 88 RDDIKTDILTALSL 101 (348)
Q Consensus 88 ~~~~~~~Ll~~~~~ 101 (348)
+.+++++|++.+++
T Consensus 123 ~~~~v~~Ll~~ga~ 136 (244)
T 3ui2_A 123 RPEVVEALVELGAD 136 (244)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCC
Confidence 55555555555433
No 100
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.86 E-value=5e-22 Score=168.96 Aligned_cols=101 Identities=25% Similarity=0.297 Sum_probs=96.4
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGH-KP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-tp 79 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++..|..|. ||
T Consensus 61 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~ 140 (239)
T 1ycs_B 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140 (239)
T ss_dssp SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998877 99
Q ss_pred HHHH--HHcCCHHHHHHHHHcCCC
Q psy3910 80 LEYL--DVISRDDIKTDILTALSL 101 (348)
Q Consensus 80 L~~A--~~~~~~~~~~~Ll~~~~~ 101 (348)
||+| +..|+.+++++|++.++.
T Consensus 141 l~~a~~~~~g~~~~~~~Ll~~~a~ 164 (239)
T 1ycs_B 141 ADKCEEMEEGYTQCSQFLYGVQEK 164 (239)
T ss_dssp HHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHHhhhc
Confidence 9999 788999999999998744
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=3.1e-22 Score=168.21 Aligned_cols=104 Identities=25% Similarity=0.247 Sum_probs=91.4
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEA-GALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~-ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+||..|+.++|++|+++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 176 (222)
T 3ehr_A 97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176 (222)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCH
Confidence 57899999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCC
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRL 104 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~ 104 (348)
||+|+..|+.++++.|++.+....+
T Consensus 177 l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 177 FDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp HHHCCSHHHHHHHC-----------
T ss_pred HHHhcchhHHHHHHHHhccchhhhc
Confidence 9999999999999999988855443
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=1e-21 Score=160.01 Aligned_cols=88 Identities=33% Similarity=0.460 Sum_probs=84.1
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.++ ..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 146 (183)
T 3deo_A 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146 (183)
T ss_dssp SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCH
Confidence 5799999999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q psy3910 80 LEYLDVISR 88 (348)
Q Consensus 80 L~~A~~~~~ 88 (348)
||+|+..++
T Consensus 147 l~~A~~~~~ 155 (183)
T 3deo_A 147 LELAREILK 155 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999987543
No 103
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.86 E-value=7.8e-22 Score=171.10 Aligned_cols=134 Identities=20% Similarity=0.254 Sum_probs=111.5
Q ss_pred CCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCC-------CC----CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy3910 5 VKDNAGWTPLHDAVSI---GNESVVRLLLEAGALV-------NV----PGLDNDTPLHLAARDVRPALAKLLIQYGADVD 70 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~---g~~~~v~~Ll~~ga~~-------n~----~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 70 (348)
.+|..|+||||+||.. |+.++|++|+++|+++ |. .|..|+||||+|+..|+.+++++|+++|++++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 4588999999999987 9999999999998763 33 56789999999999999999999999999999
Q ss_pred CCCC--------------CCCCHHHHHHHcCCHHHHHHHHH---cCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCC
Q psy3910 71 KRNI--------------QGHKPLEYLDVISRDDIKTDILT---ALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGL 133 (348)
Q Consensus 71 ~~d~--------------~g~tpL~~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~ 133 (348)
..+. .|.||||+|+..|+.+++++|++ .+. ..+..+..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-----------------------d~~~~d~~g~ 185 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA-----------------------DISARDSVGN 185 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC-----------------------CTTCCCTTSC
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC-----------------------CceeeCCCCC
Confidence 9987 79999999999999999999999 553 3334455677
Q ss_pred chHHHHHHcCCCC-------ccceeecccccccee
Q psy3910 134 AQFVKTLSSGADV-------PIIVSTLLQSNVNIL 161 (348)
Q Consensus 134 ~~~~~~la~~~~~-------~~iv~~l~~~g~~~~ 161 (348)
++++.+...+... .++++.|++.|++..
T Consensus 186 tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 7777776333321 477888888888875
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=2.8e-21 Score=173.78 Aligned_cols=99 Identities=29% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCCCCCC--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy3910 1 MNPNVKD--NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHK 78 (348)
Q Consensus 1 adin~~d--~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 78 (348)
+|+|..| ..|+||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++|+++|||++..|..|.|
T Consensus 224 advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~T 303 (368)
T 3jue_A 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRD 303 (368)
T ss_dssp CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCC
Confidence 5788888 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcC
Q psy3910 79 PLEYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 79 pL~~A~~~~~~~~~~~Ll~~~ 99 (348)
|||+|+..|+.+++++|+..+
T Consensus 304 pL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 304 PLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999876
No 105
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.85 E-value=1.8e-21 Score=167.51 Aligned_cols=93 Identities=22% Similarity=0.150 Sum_probs=89.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCC------
Q psy3910 8 NAGWTPLHDAVSIGNESVVRLLLE---AGALVNVPGLDNDTPLHLAARDVR---------PALAKLLIQYGADV------ 69 (348)
Q Consensus 8 ~~G~T~Lh~A~~~g~~~~v~~Ll~---~ga~~n~~~~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~------ 69 (348)
..|+||||+||..|+.++|++|++ +|+++|.+|..|+||||+|+..|+ .+++++|+++|+++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence 689999999999999999999999 999999999999999999999888 79999999999999
Q ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy3910 70 -DKRNIQGHKPLEYLDVISRDDIKTDILTALS 100 (348)
Q Consensus 70 -~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~ 100 (348)
+.+|..|+||||+|+..|+.+++++|++++.
T Consensus 218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 6799999999999999999999999999883
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=2.7e-21 Score=164.89 Aligned_cols=85 Identities=33% Similarity=0.458 Sum_probs=82.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
+|+|.+|..|+||||+||..|+.++|++|+++|+++|.++ ..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 147 (244)
T 3ui2_A 68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147 (244)
T ss_dssp CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 5899999999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy3910 80 LEYLDV 85 (348)
Q Consensus 80 L~~A~~ 85 (348)
||+|+.
T Consensus 148 l~~A~~ 153 (244)
T 3ui2_A 148 LELARE 153 (244)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 107
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.84 E-value=6.2e-21 Score=170.53 Aligned_cols=98 Identities=28% Similarity=0.304 Sum_probs=81.3
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCC
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLE-AGALVNVPGLDNDTPLHLAARDVR----PALAKLLIQYGADVDKRNIQG 76 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~-~ga~~n~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~d~~g 76 (348)
+++..+..|+||||+||..|+.++|++||+ .|+++|.+|..|.|+||.++..++ .+++++|+++|+|+|.+|..|
T Consensus 160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g 239 (337)
T 4g8k_A 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 239 (337)
T ss_dssp ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGG
T ss_pred ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCC
Confidence 345678889999999999999999999996 589999999999999988876544 467888999999999999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcC
Q psy3910 77 HKPLEYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 77 ~tpL~~A~~~~~~~~~~~Ll~~~ 99 (348)
+||||+|+..|+.++++.|+...
T Consensus 240 ~t~L~~a~~~~~~~~v~~Ll~~~ 262 (337)
T 4g8k_A 240 KTPLILAVEKKHLGLVQRLLEQE 262 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTST
T ss_pred CCHHHHHHHhhhhHHHHHHHHhc
Confidence 99999999999999999888753
No 108
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=158.68 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=131.4
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+.-+++....++.+......+ |. .+++.. +. +||+++.. ..+|.|++.++..|+|||+.+|+.+|++.
T Consensus 19 i~~SG~~~~~~~~l~~~i~~l--Gg---~v~~~~-~~-~THLI~~~-----~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 19 VLFTGFEPVQVQQYIKKLYIL--GG---EVAESA-QK-CTHLIASK-----VTRTVKFLTAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp EEECSCCHHHHHHHHHHHHHT--TC---EECSSG-GG-CSEEECSS-----CCCCHHHHHHTTTCSEEECHHHHHHHHHH
T ss_pred EEEeCCChHHHHHHHHHHHHC--CC---EEeCCC-CC-ceEEEECC-----CCCCHHHHHHHHcCCCEecHHHHHHHHHc
Confidence 334555555444555555555 66 555554 44 99999873 45689999999999999999999999999
Q ss_pred CCCccCccceeccc---ccCCCCchhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCC
Q psy3910 200 GKVLPVEEFEILGT---VDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPD 276 (348)
Q Consensus 200 ~~~~~e~~~ei~~~---~~~~~~~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~ 276 (348)
+++++|++|++.+. ..+|.. ......+.+ .++||.|+.||+.+.+. +++++|++||+++||+|+.+.|.
T Consensus 87 ~~~l~e~~y~l~d~~~e~~~~~~---l~~~l~ra~-~~~LF~G~~f~it~~~~----~~~~~l~~lI~~~GG~v~~~~p~ 158 (219)
T 3sqd_A 87 QKFIDEQNYILRDAEAEVLFSFS---LEESLKRAH-VSPLFKAKYFYITPGIC----PSLSTMKAIVECAGGKVLSKQPS 158 (219)
T ss_dssp TSCCCSGGGBCCCHHHHHHTTCC---HHHHHHHHH-HSCTTTTEEEEECTTCS----SCHHHHHHHHHHTTCEEESSCCC
T ss_pred CCCCChHhccCCCchhhhhcCCC---hHHHhhhhc-cccccCCcEEEEeCCCC----CCHHHHHHHHHHCCCEEECCCCc
Confidence 99999999999875 223433 222222222 57899999999998654 56999999999999999999887
Q ss_pred CCcccccccceeeccCCCCccccCCceEEEeccC-CCcccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 277 PESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
+..+.... ..... ...+||-.++ ...-..+...++.+++.+|+++||.+++| .++.|
T Consensus 159 ~~~~~~~~-----~~~~~------~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~l-d~~~~ 216 (219)
T 3sqd_A 159 FRKLMEHK-----QNSSL------SEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTL-DYESY 216 (219)
T ss_dssp HHHHHHHH-----HCTTS------CEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCC-CTTTS
T ss_pred hHHhhhhh-----cccCC------CCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheee-cchhc
Confidence 54311000 00000 1122333332 21112233457899999999999999998 55543
No 109
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=156.67 Aligned_cols=138 Identities=23% Similarity=0.200 Sum_probs=112.0
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHH
Q psy3910 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN-IQGHKPL 80 (348)
Q Consensus 2 din~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL 80 (348)
+++..|..|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||
T Consensus 1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred CccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 467889999999999999999999999999999999999999999999999999999999999999998655 5599999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~ 160 (348)
|+|+..|+.++++.|++.+..+.. .+..+.+++..+. ..++.++++.|++.|++.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~~-----------------------~~~~g~t~l~~A~--~~~~~~~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPSL-----------------------IDGEGCSCIHLAA--QFGHTSIVAYLIAKGQDV 135 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTC-----------------------CCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcc-----------------------cCCCCCCHHHHHH--HcCHHHHHHHHHhcCCCc
Confidence 999999999999999998744322 2233444444444 455556666666665554
Q ss_pred eecC
Q psy3910 161 LLVN 164 (348)
Q Consensus 161 ~iv~ 164 (348)
...+
T Consensus 136 ~~~~ 139 (240)
T 3eu9_A 136 DMMD 139 (240)
T ss_dssp TCCC
T ss_pred cccC
Confidence 4443
No 110
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.82 E-value=4.3e-21 Score=160.85 Aligned_cols=188 Identities=13% Similarity=0.192 Sum_probs=126.6
Q ss_pred CCCCcccccCCchHHHHHHcCCCCcccee--eccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcC
Q psy3910 123 DQLDKTQTSGLAQFVKTLSSGADVPIIVS--TLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIG 200 (348)
Q Consensus 123 ~~~~~~~~~~~~~~~~~la~~~~~~~iv~--~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~ 200 (348)
++++...+..+......+ +. .++. .+.+. +||+++.. ..+|.|++.+++.|+|||+.+||.+|.+.+
T Consensus 15 Sg~~~~~~~~l~~~i~~L--Gg---~~~~~~~~~~~-~THlV~~~-----~~RT~K~l~aia~G~wIvs~~wl~~s~~~g 83 (235)
T 3al2_A 15 SSLNPQERIDYCHLIEKL--GG---LVIEKQCFDPT-CTHIVVGH-----PLRNEKYLASVAAGKWVLHRSYLEACRTAG 83 (235)
T ss_dssp ESCCHHHHHHHHHHHHHT--TC---EECCSSSCCTT-CCEEEESS-----CCCSHHHHHHHHTTCEEECTHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHc--CC---EEeccCCCCCC-CcEEEECC-----CCCCHHHHHHHHcCCcCccHHHHHHHHHcC
Confidence 444444444455555555 55 4443 34455 99999983 456999999999999999999999999999
Q ss_pred CCccCccceeccccc----CCCC-------chhhhhHHhHh--hhC---CCCCcceEEEecCCCCCCCCCChHHHHHHHH
Q psy3910 201 KVLPVEEFEILGTVD----YPLA-------KPFHRSRENKE--NLL---PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFK 264 (348)
Q Consensus 201 ~~~~e~~~ei~~~~~----~~~~-------~~~~~~r~~~~--~~~---p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~ 264 (348)
++++|++||+.+... .+.. .+.++.|.... +.. ++||.|+.|++... .+..+.|++||+
T Consensus 84 ~~l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~-----~~~~~~l~~ii~ 158 (235)
T 3al2_A 84 HFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVD-----QSREAGFKRLLQ 158 (235)
T ss_dssp SCCCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECC-----HHHHHHHHHHHH
T ss_pred CCCChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEecC-----CCcHHHHHHHHH
Confidence 999999999987521 1211 12345454322 211 79999999999873 346689999999
Q ss_pred HcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC----C--CcccccccccccccchHHHHHHHhhcc
Q psy3910 265 RGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE----A--LPRRLYNMEHVKALGLSWVRACVEQFE 338 (348)
Q Consensus 265 ~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~--~~~~~~~~~~~~~~~~~W~~dci~~~~ 338 (348)
++||+|+...|... ... .++.+|-... . ..-......++.+++.+||+|||++++
T Consensus 159 agGg~vl~~~~~~~-~~~------------------~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~ 219 (235)
T 3al2_A 159 SGGAKVLPGHSVPL-FKE------------------ATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQES 219 (235)
T ss_dssp HTTCEECSSCCGGG-GGG------------------CSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSS
T ss_pred cCCcEEecCCCCCc-ccc------------------CceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCC
Confidence 99999997655321 111 1222221111 0 001111235689999999999999999
Q ss_pred ccCCCCC
Q psy3910 339 IVQPKSP 345 (348)
Q Consensus 339 l~~~~~~ 345 (348)
+.++++|
T Consensus 220 ~~~~~~y 226 (235)
T 3al2_A 220 PPHVENY 226 (235)
T ss_dssp CCCHHHH
T ss_pred CCChhhe
Confidence 9888765
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=3.3e-20 Score=166.79 Aligned_cols=127 Identities=21% Similarity=0.188 Sum_probs=111.0
Q ss_pred CCCCCChHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy3910 6 KDNAGWTPLHDAVSI-GNESVVRLLLEAGALVNVPG--LDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82 (348)
Q Consensus 6 ~d~~G~T~Lh~A~~~-g~~~~v~~Ll~~ga~~n~~~--~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 82 (348)
.+..+.|+||.|+.. |+.++|+.|+++|+++|..+ ..|.||||+|+..|+.+++++|+++|+|+|..|..|+||||+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 344567899999999 99999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccc
Q psy3910 83 LDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSN 157 (348)
Q Consensus 83 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g 157 (348)
|+..|+.+++++|++.+++ .+..+..+.+++..+. ..++.+++++|+..+
T Consensus 275 A~~~g~~~~v~~LL~~Gad-----------------------~~~~d~~G~TpL~~A~--~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGAD-----------------------LGARDSEGRDPLTIAM--ETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHCcCC-----------------------CCCcCCCCCCHHHHHH--HCCCHHHHHHHHHcC
Confidence 9999999999999998743 3344556777777777 777788888887764
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=7.5e-20 Score=171.96 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=111.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHH---cCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVP------GLDNDTPLHLAAR---DVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 10 G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~------~~~g~TpLh~A~~---~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
..+.||.|+..|+.++|+.||++|+++|.. |..|+||||+||. .|+.+++++||++|||+|.+|..|+|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 457899999999999999999999999987 8899999999976 8999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~ 160 (348)
|+|+..|+.+++++|++.|++ .+..+..+.+++..+. ..++.+++++|++.|++.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~-----------------------~~~~d~~g~tpl~~A~--~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL-----------------------VGTVNEAGETALDIAR--KKHHKECEELLEQAQAGT 266 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC-----------------------CSCCCTTCCCHHHHHH--HTTCHHHHHHHHHTCC--
T ss_pred HHHHHcCCHHHHHHHHHcCCC-----------------------CCCcCCCCCCHHHHHH--HcCCHHHHHHHHHhCCCC
Confidence 999999999999999999843 3344566777777776 778889999999988887
Q ss_pred eecC
Q psy3910 161 LLVN 164 (348)
Q Consensus 161 ~iv~ 164 (348)
...+
T Consensus 267 ~~~~ 270 (497)
T 3lvq_E 267 FAFP 270 (497)
T ss_dssp ----
T ss_pred CCCc
Confidence 7644
No 113
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=158.25 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=109.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy3910 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNV------PGLDNDTPLHLAARD---VRPALAKLLIQYGADVDKRNIQGHKP 79 (348)
Q Consensus 9 ~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~------~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tp 79 (348)
.+.++||.|+..|+.+.|+.|++.|+++|. .+..|+||||+|+.. |+.+++++|+++|+|+|.+|..|+||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 356789999999999999999999999998 688999999999997 89999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccc
Q psy3910 80 LEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVN 159 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~ 159 (348)
||+|+..|+.+++++|++.++++ +..+..+.+++..+. ..++.+++++|++.|++
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~-----------------------~~~d~~G~TpL~~A~--~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALV-----------------------GTVNEAGETALDIAR--KKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCC-----------------------SCCCTTSCCHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-----------------------CCcCCCCCCHHHHHH--HcCCHHHHHHHHHhcCC
Confidence 99999999999999999987443 334456677777776 66777888888877654
No 114
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.79 E-value=3.6e-20 Score=164.94 Aligned_cols=103 Identities=21% Similarity=0.096 Sum_probs=94.1
Q ss_pred CCCCCCCCCCChHHHHHHHcCC---HHHHHHHHHCC-CCCCCCCCCCChHHHHHHH----cCCHHHHHHHHhcCC-----
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGN---ESVVRLLLEAG-ALVNVPGLDNDTPLHLAAR----DVRPALAKLLIQYGA----- 67 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~---~~~v~~Ll~~g-a~~n~~~~~g~TpLh~A~~----~g~~~~v~~Ll~~ga----- 67 (348)
||+|.+|..|+||||+||..|+ .++++.|++.+ +++|.+|..|+||||+|+. .|+.+++++|++.++
T Consensus 155 ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~ 234 (327)
T 1sw6_A 155 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234 (327)
T ss_dssp CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999 78899999986 8899999999999999999 899999999998753
Q ss_pred ----------------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy3910 68 ----------------------------------------DVDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPR 103 (348)
Q Consensus 68 ----------------------------------------d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~ 103 (348)
++|.+|..|+||||+|+..|+.+++++|++.|+++.
T Consensus 235 ~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~ 310 (327)
T 1sw6_A 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310 (327)
T ss_dssp GGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred ccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 688889999999999999999999999999985543
No 115
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=4e-19 Score=154.26 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=110.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 10 GWTPLHDAVSIGNESVVRLLLEAGALVN------VPGLDNDTPLHLAARD---VRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 10 G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n------~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
..++|+.|+..|+.+.++.|++.|++++ ..|..|+||||+|+.. |+.+++++|+++|+|+|.+|..|+|||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence 4579999999999999999999999955 4478899999999999 899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchhHHHHHhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccce
Q psy3910 81 EYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNI 160 (348)
Q Consensus 81 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~lli~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~ 160 (348)
|+|+..|+.+++++|++.|++ .+..+..+.+++..+. ..++.++++.|++.|+..
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad-----------------------~~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKAS-----------------------IEIANESGETPLDIAK--RLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCC-----------------------CCCccCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC
Confidence 999999999999999998743 3344566777777777 777889999998877653
No 116
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.79 E-value=4.4e-19 Score=146.78 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=113.1
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceeccc---ccCCCCchhhh
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGT---VDYPLAKPFHR 224 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~---~~~~~~~~~~~ 224 (348)
.+++.+. . +||++++ ...+|.|++.++..|+|||+.+||.+|++.+++++|++|++.+. ..++.. .+.
T Consensus 35 ~~~~~~~-~-~THlI~~-----~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~l~e~~y~~~~~~~~~~~~~~--l~~ 105 (209)
T 2etx_A 35 SLAGSAA-E-ASHLVTD-----RIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFS--LQD 105 (209)
T ss_dssp EECSSTT-T-CSEEECS-----SCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBCCCHHHHHHTTCC--HHH
T ss_pred EEeCCCC-C-ceEEEEC-----CCCCCHHHHHHHhcCCccccHHHHHHHHHcCCCCChhhccccChhhhhhcCCC--HHH
Confidence 5555544 4 8999987 24578999999999999999999999999999999999999764 122322 111
Q ss_pred hHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceE
Q psy3910 225 SRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQA 304 (348)
Q Consensus 225 ~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (348)
+. .+.+. .+||.|+.||+.+. . .++++.|.+||+++||+++.+.|... . .+++
T Consensus 106 ~~-~~a~~-~~lF~g~~~~~~~~-~---~~~~~~l~~li~~~GG~v~~~~~~~~--------------~-------~~~i 158 (209)
T 2etx_A 106 AL-SRARE-RRLLEGYEIYVTPG-V---QPPPPQMGEIISCCGGTYLPSMPRSY--------------K-------PQRV 158 (209)
T ss_dssp HH-HHHHH-SCTTTTCEEEECTT-C---SSCHHHHHHHHHHTTCEECSSCCCSC--------------C-------TTEE
T ss_pred HH-hhhhh-CCCcCCcEEEEeCC-C---CCCHHHHHHHHHHCCCEEECCCCCCC--------------C-------CceE
Confidence 11 11111 48999999999873 3 46889999999999999998665421 0 1233
Q ss_pred EEeccC-CCcccccccccccccchHHHHHHHhhccccCCCC
Q psy3910 305 IVYSEE-ALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 305 i~~~~~-~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
||..+. ..........++.+|+.+||+|||.+++| ++++
T Consensus 159 vI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~l-d~e~ 198 (209)
T 2etx_A 159 VITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEA-KPEA 198 (209)
T ss_dssp EECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTCC-CGGG
T ss_pred EEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhccc-ChHH
Confidence 443322 11111223456889999999999999997 6554
No 117
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=1.6e-18 Score=124.52 Aligned_cols=68 Identities=50% Similarity=0.636 Sum_probs=66.3
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad 68 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++||+
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999986
No 118
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=5e-19 Score=132.50 Aligned_cols=80 Identities=38% Similarity=0.501 Sum_probs=75.3
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 80 (348)
+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|||+|..+..|.||-
T Consensus 33 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999884
No 119
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.72 E-value=1.3e-19 Score=163.46 Aligned_cols=95 Identities=12% Similarity=-0.046 Sum_probs=74.4
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCH
Q psy3910 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALV---NVPGLDNDTPLHLAARDVRPALAKLLIQYGADV---DKRNIQGHKP 79 (348)
Q Consensus 6 ~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~---n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~tp 79 (348)
++.+++||||+||..|+.++|++|+++|+.. +..+..|.||||+|+..|+.++|++|+++|+|+ +..+.+ .||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 4556789999999999999999999998832 233456889999999999999999999999762 333333 899
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC
Q psy3910 80 LEYLDVISRDDIKTDILTALSL 101 (348)
Q Consensus 80 L~~A~~~~~~~~~~~Ll~~~~~ 101 (348)
||+|+..|+.+++++|++.+++
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~ 188 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPT 188 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGG
T ss_pred HHHHHHCCCHHHHHHHHHcCCc
Confidence 9999999999999999988743
No 120
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.71 E-value=2.2e-19 Score=161.99 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=83.0
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCCH
Q psy3910 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALV---NVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK--RNIQGHKP 79 (348)
Q Consensus 5 ~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~---n~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~d~~g~tp 79 (348)
..|..|+||||+||..|+.++|++|+++|+++ +..+.+ .||||+|+..|+.++|++|+++|++++. .|..|.||
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp 201 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 201 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence 45667899999999999999999999999863 322233 9999999999999999999999999887 88899999
Q ss_pred HHHHH-HcCCHHHHHHHHHcC
Q psy3910 80 LEYLD-VISRDDIKTDILTAL 99 (348)
Q Consensus 80 L~~A~-~~~~~~~~~~Ll~~~ 99 (348)
||+|+ ..|+.+++++|++.+
T Consensus 202 L~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 202 FRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHHHSTTCCHHHHHHHTTSH
T ss_pred HHHHHHHCCCHHHHHHHHhCC
Confidence 99999 999999999999865
No 121
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.70 E-value=3e-17 Score=135.73 Aligned_cols=168 Identities=16% Similarity=0.175 Sum_probs=112.2
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceecccc---cCCCCchhhh
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTV---DYPLAKPFHR 224 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~~---~~~~~~~~~~ 224 (348)
.+++.. .. +||++++ ...+|.|++.++..|+|||+++||.+|++.+.+++|++|++.+.. .+|.. ...
T Consensus 31 ~v~~~~-~~-~THlV~~-----~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~~y~l~d~~~e~~~~~~--l~~ 101 (220)
T 3l41_A 31 SITSNP-SK-CTHLIAP-----RILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCT--LES 101 (220)
T ss_dssp EECSCT-TT-CSEEECS-----SCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSGGGBCCCHHHHHHHTSC--HHH
T ss_pred eeccCc-hh-hhhhhhh-----hHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccCccccCCcHHHhhcccc--HHH
Confidence 444443 34 8999987 346899999999999999999999999999999999999998751 22322 112
Q ss_pred hHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceE
Q psy3910 225 SRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQA 304 (348)
Q Consensus 225 ~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (348)
+..+.....++||.|+.||+.+.+.+ .+++++|++||+++||+|+. .|........ +. .. -..+
T Consensus 102 ~~~rar~~~~~LF~G~~f~it~~~~~--~p~~~~l~~iI~~~GG~v~~-~p~~~~~~~~----~~---~~------~~~~ 165 (220)
T 3l41_A 102 ALKRARAQGPSLLEDYVVYLTSKTVA--PENVPAVISIVKSNGGVCST-LNVYNKRLAR----HL---ED------GNVV 165 (220)
T ss_dssp HHHHHHHHCSCTTTTSEEEEETTSSC--GGGHHHHHHHHHHTTCEEEE-ECSCCHHHHH----HH---HH------CCEE
T ss_pred HHHHHHhcCchhhhheeEEEeccccC--CCCCceEEEEEecCCcEech-hhHHHHHHHH----hc---cc------CCEE
Confidence 22222233479999999999986521 46799999999999999998 5532111000 00 00 0123
Q ss_pred EEeccCCCc--cccccc----ccccccchHHHHHHHhhcccc
Q psy3910 305 IVYSEEALP--RRLYNM----EHVKALGLSWVRACVEQFEIV 340 (348)
Q Consensus 305 i~~~~~~~~--~~~~~~----~~~~~~~~~W~~dci~~~~l~ 340 (348)
+|-.+.... +...++ ..+.+++.+|++++|.+++|-
T Consensus 166 vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~ 207 (220)
T 3l41_A 166 LITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEID 207 (220)
T ss_dssp EEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCC
T ss_pred EEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcC
Confidence 443332111 111111 234589999999999999874
No 122
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.68 E-value=3.9e-17 Score=139.07 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=110.4
Q ss_pred cceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceecccccCCCCchhhhhHHhHhhhCCCCC
Q psy3910 158 VNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLF 237 (348)
Q Consensus 158 ~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~~~~~~~~~~~~~r~~~~~~~p~lf 237 (348)
.+|++.+. ..++.|++.++..|.+||+.+||.+|++.++++++++|.+...... ...|.......++||
T Consensus 88 ~t~LIa~~-----~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~------~~~~~~~~~~~~~LF 156 (259)
T 1kzy_C 88 QCLLIADQ-----HCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSL------EEQRILDWQPRENPF 156 (259)
T ss_dssp EEEEEESS-----CCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEET------TTTEEECCCCCCCTT
T ss_pred CeEEEcCC-----CCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCccc------ccchhhhccccCCCC
Confidence 35677662 3468999999999999999999999999999999999999654111 111111011236899
Q ss_pred cceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCC-C-ccc
Q psy3910 238 NGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEA-L-PRR 315 (348)
Q Consensus 238 ~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~ 315 (348)
.|+.||+.+... ...++.+..|++.+||+++.+.+..+... ... ...+++||.+... + ...
T Consensus 157 ~G~~I~i~~~~~---~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~-----------d~~---~~~~~viv~d~~~~~~~~~ 219 (259)
T 1kzy_C 157 QNLKVLLVSDQQ---QNFLELWSEILMTGGAASVKQHHSSAHNK-----------DIA---LGVFDVVVTDPSCPASVLK 219 (259)
T ss_dssp TTCEEEEEESCT---TTTHHHHHHHHHHTTCSEEEEEESSSSCC-----------CSC---GGGCSEEEECTTCCHHHHH
T ss_pred CCeEEEEecCCC---CCHHHHHHHHHHhcCCEEEeccccchhhh-----------hcc---CCCCeEEEECCCChHHHHH
Confidence 999999988543 34678899999999999998753211000 000 0134556765431 1 112
Q ss_pred ccccccccccchHHHHHHHhhccccCCC
Q psy3910 316 LYNMEHVKALGLSWVRACVEQFEIVQPK 343 (348)
Q Consensus 316 ~~~~~~~~~~~~~W~~dci~~~~l~~~~ 343 (348)
..+..++.+|+.+||+|||.+++++|++
T Consensus 220 ~a~~~~i~iVs~EWv~~sI~~~~ll~~~ 247 (259)
T 1kzy_C 220 CAEALQLPVVSQEWVIQCLIVGERIGFK 247 (259)
T ss_dssp HHHHHTCCEECHHHHHHHHHHTSCCCTT
T ss_pred HHHhcCCCEecHHHHHHHHHhCCcCCCC
Confidence 3345678999999999999999999998
No 123
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.58 E-value=4.8e-15 Score=109.78 Aligned_cols=62 Identities=37% Similarity=0.446 Sum_probs=60.3
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q psy3910 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62 (348)
Q Consensus 1 adin~~d~~G~T~Lh~A~~~g~~~~v~~Ll~~ga~~n~~~~~g~TpLh~A~~~g~~~~v~~L 62 (348)
+|+|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus 48 ~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999987
No 124
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.51 E-value=1.2e-14 Score=126.05 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=124.0
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+..+++....+..+..+...+ |+ .+...+... +||+++... .+.++..++..|.+||+.+|+.+|++.
T Consensus 111 ~~~tG~~~~~r~~l~~~i~~~--GG---~v~~~~t~~-tTHLI~~~~------~t~Ky~~A~~~gi~IV~~~Wl~~c~~~ 178 (298)
T 3olc_X 111 ISCTSLEKEKREEVHKYVQMM--GG---RVYRDLNVS-VTHLIAGEV------GSKKYLVAANLKKPILLPSWIKTLWEK 178 (298)
T ss_dssp EEEESCCHHHHHHHHHHHHHT--TC---EECSSCCTT-CCEEEESSS------CSHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred EEeCCCcHHhHHHHHHHHHHC--CC---EEecCcCCC-eeEEEEeCC------CChHHHHHHHCCCeEeeHHHHHHHHHc
Confidence 344555555555555555555 66 666666666 999998854 356888888899999999999999998
Q ss_pred CCCccCccceecccccCCCCchhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCc
Q psy3910 200 GKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES 279 (348)
Q Consensus 200 ~~~~~e~~~ei~~~~~~~~~~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~ 279 (348)
++.++...|. .. + ......++|.||.|++.| |. .+++++++++|+..||++......
T Consensus 179 ~~~~~~~~~~--~~-----~---------~~~~~~~~f~g~~i~~tG-~~---~~~r~~l~~li~~~GG~~~~~ls~--- 235 (298)
T 3olc_X 179 SQEKKITRYT--DI-----N---------MEDFKCPIFLGCIICVTG-LC---GLDRKEVQQLTVKHGGQYMGQLKM--- 235 (298)
T ss_dssp HHTTCCSSGG--GS-----C---------GGGGBCCTTTTCEEEECS-CC---HHHHHHHHHHHHHTTCEECSSCCT---
T ss_pred CCcCCccccc--cc-----c---------cccccccccCCeEEEEeC-CC---CccHHHHHHHHHHcCCEEeceecC---
Confidence 8877654431 00 1 123345789999999999 55 458999999999999998653110
Q ss_pred ccccccceeeccCCCCccccCCceEEEeccCCCcccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 280 MNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
..|||+|+..+...........++++|+.+||.|||.+.+++|.++|
T Consensus 236 -------------------~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y 282 (298)
T 3olc_X 236 -------------------NECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIY 282 (298)
T ss_dssp -------------------TTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGS
T ss_pred -------------------CCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhc
Confidence 13888888877633333344457999999999999999999987743
No 125
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.34 E-value=1.3e-11 Score=103.67 Aligned_cols=153 Identities=11% Similarity=0.118 Sum_probs=103.3
Q ss_pred ccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceeccccc---C------CCCchhhhhHH
Q psy3910 157 NVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVD---Y------PLAKPFHRSRE 227 (348)
Q Consensus 157 g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~~~---~------~~~~~~~~~r~ 227 (348)
+.+|++.+. ..++.+++.++..|..+|+.+||.+|++.+++++.++|.+..... . ..|-.......
T Consensus 68 ~~t~lia~~-----~~rt~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~ 142 (241)
T 2vxb_A 68 NQAFVVSDT-----FSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLY 142 (241)
T ss_dssp SEEEEECSS-----CCCCHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHH
T ss_pred cceEEEcCC-----CCCcHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhccchhhccccCCChhhHHH
Confidence 467888763 236899999999999999999999999999999999988854311 0 01100011122
Q ss_pred hHhhhCCCCCcceEEEecCCCCCCCCC-----------ChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCc
Q psy3910 228 NKENLLPGLFNGLQVYLTKPWPTSSPL-----------SSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQH 296 (348)
Q Consensus 228 ~~~~~~p~lf~g~~~~~~~~~~~~~~~-----------~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 296 (348)
......+.||.|+.+++...-.+ .+ ..+.+..+++.+||++ .+.|..+. .
T Consensus 143 ~~~~~~~~Lf~g~~i~~~~~~~~--~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v~~~~~---~------------- 203 (241)
T 2vxb_A 143 DRLLARKGPLFGKKILFIIPEAK--SWQKKIENTEQGQKALAHVYHALALGADV-EIRPNVAH---L------------- 203 (241)
T ss_dssp HHHHHCCCTTTTCEEEECCCC--------------CHHHHHHHHHHHHHTTCEE-ECCSCCSS---C-------------
T ss_pred HHHhhcCcCCCCcEEEEEeCCCc--ccccccccccccchHHHHHHHHHHcCCce-eccccccc---C-------------
Confidence 33345678999999999763110 11 1388999999999999 55433221 0
Q ss_pred cccCCceEEEeccCCCcccccccccccccchHHHHHHHhhccccC
Q psy3910 297 RLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQ 341 (348)
Q Consensus 297 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~ 341 (348)
.++ +||.++... ....++..|+.+||+|||...++++
T Consensus 204 ----~~d-~v~~~~~~~---~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 204 ----ECD-LILTMDGNI---VDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp ----CCS-EEECSSSCC---CSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred ----Ccc-EEEECCccc---cccCCCCEecHHHHHHHHHhceecC
Confidence 112 444444222 3345789999999999999999886
No 126
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=86.91 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC
Q psy3910 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL 312 (348)
Q Consensus 233 ~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (348)
.+.+|.||.||+.+ +. .+++++|+++|+.+||++..... -..+||+|.-.....
T Consensus 9 ~~~lF~g~~~~isg-~~---~~~~~~L~~~i~~~GG~~~~~~~----------------------~~~~THlI~~~~~~~ 62 (97)
T 2ebw_A 9 SSTIFSGVAIYVNG-YT---DPSAEELRKLMMLHGGQYHVYYS----------------------RSKTTHIIATNLPNA 62 (97)
T ss_dssp CCCTTTTCEEEECS-SC---SSCHHHHHHHHHHTTCEECSSCC----------------------SSSCCEEECSCCCTT
T ss_pred CCCCCCCeEEEEeC-CC---cccHHHHHHHHHHcCCEEeeecC----------------------CCCCEEEEecCCChH
Confidence 35799999999988 44 56899999999999999754211 013778777665422
Q ss_pred cccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
..... .++..|+.+||+|||.+-+++|.+.|
T Consensus 63 k~~~~--~~~~iV~p~Wl~dci~~~~~l~~~~Y 93 (97)
T 2ebw_A 63 KIKEL--KGEKVIRPEWIVESIKAGRLLSYIPY 93 (97)
T ss_dssp HHHHT--SSSCCBCTHHHHHHHHHTSCCCSGGG
T ss_pred HHHHh--cCCCEeChHHHHHHHHcCCccCchHc
Confidence 21112 27899999999999999999998843
No 127
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.17 E-value=3.7e-11 Score=87.51 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=69.0
Q ss_pred hhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCce
Q psy3910 224 RSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQ 303 (348)
Q Consensus 224 ~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (348)
.+|.+..+...+.|.||.+|+.| |. ...+++|+++|+..||++.... + ..|||
T Consensus 9 ~~~~~~~~~~~p~F~g~~Ic~sG-f~---~~er~~l~~~i~~~GG~~~~~l------~-----------------~~cTH 61 (112)
T 3l46_A 9 SGRENLYFQGVPPFQDCILSFLG-FS---DEEKTNMEEMTEMQGGKYLPLG------D-----------------ERCTH 61 (112)
T ss_dssp ---------CCCTTTTCEECEES-CC---HHHHHHHHHHHHHTTCEECCTT------C-----------------TTCSE
T ss_pred cccccccccCCCccCCeEEEEeC-CC---HHHHHHHHHHHHHcCCEECccc------C-----------------CCceE
Confidence 46777778888899999999999 77 6689999999999999986421 1 24999
Q ss_pred EEEeccCCCcccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 304 AIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
+|+..+...........++.+|+.+||.|||.+-..++.++|
T Consensus 62 LV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ldE~~Y 103 (112)
T 3l46_A 62 LVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGETMY 103 (112)
T ss_dssp EEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSCCCGGGS
T ss_pred EEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCccChhhc
Confidence 999988733223334468999999999999999888877644
No 128
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=7e-11 Score=84.03 Aligned_cols=85 Identities=8% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCc
Q psy3910 234 PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALP 313 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (348)
+.+|.||.||+.+ +. .+++++|+++|+.+||++....... ..|||+|+..+....
T Consensus 5 ~~~f~g~~~~i~g-~~---~~~~~~l~~~i~~~GG~~~~~~~~~---------------------~~~THlI~~~~~~~K 59 (92)
T 4id3_A 5 SKIFKNCVIYING-YT---KPGRLQLHEMIVLHGGKFLHYLSSK---------------------KTVTHIVASNLPLKK 59 (92)
T ss_dssp -CTTTTCEEEECS-CC---SSCHHHHHHHHHHTTCEEESSCCCT---------------------TTCCEEECSCCCHHH
T ss_pred ccccCCEEEEEeC-CC---CcCHHHHHHHHHHCCCEEEEEecCC---------------------CceEEEEecCCCHHH
Confidence 5799999999998 44 4589999999999999997532100 137888876655211
Q ss_pred ccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 314 RRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 314 ~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
.....++..|+.+||+|||.+.+++|.++|
T Consensus 60 --~~~~~~~~iV~~~Wi~dci~~~~~l~e~~Y 89 (92)
T 4id3_A 60 --RIEFANYKVVSPDWIVDSVKEARLLPWQNY 89 (92)
T ss_dssp --HHHTTTSCEECTHHHHHHHHHTSCCCGGGG
T ss_pred --HHHcCCCCEEcccHHHHHHHcCCcCChhhc
Confidence 122257899999999999999999998743
No 129
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.10 E-value=1.1e-10 Score=83.65 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=66.9
Q ss_pred hCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCC
Q psy3910 232 LLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEA 311 (348)
Q Consensus 232 ~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 311 (348)
.+|.+|.|+.||+.+..+ ...++.|.++|.+.||++.... + ..+|++|.-.+.+
T Consensus 3 ~Lpd~F~g~~f~l~~~~p---~~~r~~l~ryiia~GG~v~~~~------------------~-----~~vTHvIt~~~~d 56 (104)
T 3pc6_A 3 ELPDFFEGKHFFLYGEFP---GDERRRLIRYVTAFNGELEDYM------------------N-----ERVQFVITAQEWD 56 (104)
T ss_dssp CCCCTTTTCEEEEESCCS---TTHHHHHHHHHHHTTCEECSSC------------------C-----TTCCEEEESSCCC
T ss_pred CcchhhCCeEEEEcCCCc---HHHHHHHHHHHHHcCCEEEccc------------------C-----CCceEEEeCCCCC
Confidence 368899999999999654 5689999999999999975421 0 1267777766541
Q ss_pred Cc--ccccccccccccchHHHHHHHhhccccCCCCCCC
Q psy3910 312 LP--RRLYNMEHVKALGLSWVRACVEQFEIVQPKSPYE 347 (348)
Q Consensus 312 ~~--~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~~~ 347 (348)
.. ........+..|..+||.|||.+.+++|.+ ||+
T Consensus 57 ~~~~~a~~~~p~~~~V~P~WI~~Ci~~~klvp~~-~y~ 93 (104)
T 3pc6_A 57 PNFEEALMENPSLAFVRPRWIYSCNEKQKLLPHQ-LYG 93 (104)
T ss_dssp HHHHHHHTTCTTCEEECHHHHHHHHHHTSCCCGG-GGB
T ss_pred hhHHHHhhhCCCCeEEccHHHHHHHhcCccCCcc-cce
Confidence 11 112335678999999999999999999998 653
No 130
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.3e-10 Score=98.02 Aligned_cols=137 Identities=9% Similarity=0.126 Sum_probs=70.8
Q ss_pred hccceeecHHHHHHHHhcCCCccCccceecccc------------cCCCC--chhhhhHHh-------------------
Q psy3910 182 LSGIKAVDYTWISRSLEIGKVLPVEEFEILGTV------------DYPLA--KPFHRSREN------------------- 228 (348)
Q Consensus 182 ~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~~------------~~~~~--~~~~~~r~~------------------- 228 (348)
..|..+|+++||.+|++.+++++.++|.+.... .+|.. .......++
T Consensus 72 ~~~~~vV~p~Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 151 (264)
T 1z56_C 72 DRGYDILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDS 151 (264)
T ss_dssp TTTCCCBCSSTTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCC
T ss_pred hCCCCEEechHHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhc
Confidence 356799999999999999999999988664320 11100 000000000
Q ss_pred -HhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEe
Q psy3910 229 -KENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVY 307 (348)
Q Consensus 229 -~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 307 (348)
.......||.||.||+.+... ...++-|..+|+.+||+++... ..+++.||-
T Consensus 152 ~~~~~~~~lF~g~~~yl~~~~~---~~~~~~l~~~i~~~GG~v~~~l------------------------~~~t~hVV~ 204 (264)
T 1z56_C 152 EVRRFPLFLFSNRIAYVPRRKI---STEDDIIEMKIKLFGGKITDQQ------------------------SLCNLIIIP 204 (264)
T ss_dssp SCCCCCCC-----------------------CHHHHHHHTTSCCCCS------------------------SSCSEEECC
T ss_pred ccccCchhhhCCeEEEEecCCC---chhHHHHHHHHHHcCCEEeccc------------------------CCCEEEEEe
Confidence 001123589999999988422 4456678899999999997531 124555554
Q ss_pred ccCCC--cc---cc----ccc-------ccc-cccchHHHHHHHhhccccCCCCC
Q psy3910 308 SEEAL--PR---RL----YNM-------EHV-KALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 308 ~~~~~--~~---~~----~~~-------~~~-~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
.++.. .. .. ... .++ +.|+.+||.|||..-+++|.+.|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y 259 (264)
T 1z56_C 205 YTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEEDF 259 (264)
T ss_dssp CSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEECTHHHHHHHTTSCCCSSCCC
T ss_pred CCCccchHHHHHHHHHHHHhhcccccccCCCCEEecHHHHHHHHHcCCcCCHHHc
Confidence 43210 00 00 111 243 88999999999999999998843
No 131
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=4.5e-09 Score=74.93 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC
Q psy3910 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL 312 (348)
Q Consensus 233 ~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (348)
.+.||+|+.||+.. ..+++.|+.+|+++||+|..... .. . ..||...+ ...||.|+-.+..
T Consensus 9 ~~~LF~g~~F~i~~------e~p~~~le~~I~~~GG~v~~~~~-~~---~---g~~~~~~~-----~~iTh~I~drp~~- 69 (100)
T 2ep8_A 9 HKKLFEGLKFFLNR------EVPREALAFIIRSFGGEVSWDKS-LC---I---GATYDVTD-----SRITHQIVDRPGQ- 69 (100)
T ss_dssp SCCTTSSCEEECCS------SSCHHHHHHHHHHTTCEEECCTT-TS---S---CCCSCTTC-----TTCCEEECSCTTT-
T ss_pred hHHHcCCcEEEEec------CCCHHHHHHHHHHcCCEEEeccc-cc---c---CcccccCC-----CceEEEEecccch-
Confidence 35799999999987 46899999999999999975321 00 0 11222111 1245555543321
Q ss_pred cccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
. ....+...|..+||+|||.+-+|||.+.|
T Consensus 70 ~---~~~~~r~~VqPqWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 70 Q---TSVIGRCYVQPQWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp S---CCBTTBEEECTHHHHHHHHHTSCCCTTTC
T ss_pred h---hhcCCCeEEcchHHHHHHhcCCcCChhhc
Confidence 1 12245578999999999999999998743
No 132
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.95 E-value=7.6e-10 Score=80.86 Aligned_cols=85 Identities=8% Similarity=0.058 Sum_probs=67.0
Q ss_pred CCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC
Q psy3910 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL 312 (348)
Q Consensus 233 ~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (348)
..+.|.||.+|+.+ |. ...++.|+++|+..||++... ++ ..|||+|+..+...
T Consensus 9 ~~~~F~g~~i~~sg-~~---~~~r~~l~~~i~~~GG~~~~~------~~-----------------~~~THLV~~~~~~~ 61 (109)
T 2cou_A 9 KVPPFQDCILSFLG-FS---DEEKHSMEEMTEMQGGSYLPV------GD-----------------ERCTHLIVEENTVK 61 (109)
T ss_dssp CCCTTTTCBEEEES-SC---HHHHHHHHHHHHHHTCBCCCT------TC-----------------TTCSEEEECTTTCS
T ss_pred cCCcCCCeEEEecC-CC---HHHHHHHHHHHHHcCCEEecc------cC-----------------CCccEEEEeCCccH
Confidence 35689999999998 76 668999999999999998532 11 23999999876633
Q ss_pred cccccccccccccchHHHHHHHhhccccCCCC
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
........++++|+.+||.|||.+-.+++-.+
T Consensus 62 K~~~a~~~~i~IV~~~Wl~dsi~~g~~ldE~~ 93 (109)
T 2cou_A 62 DLPFEPSKKLFVVKQEWFWGSIQMDARAGETM 93 (109)
T ss_dssp SCSSCCCTTSEEECHHHHHHHHHTTSCCCGGG
T ss_pred HHHHHHHCCCeEecHHHHHHHHHcCCcCChhc
Confidence 33334456799999999999999999998663
No 133
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.93 E-value=5.3e-09 Score=89.12 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=100.6
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhcc-ceeecHHHHHHHHhcCCCccCccceeccc------------c
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSG-IKAVDYTWISRSLEIGKVLPVEEFEILGT------------V 214 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g-~~iv~~~wi~~~~~~~~~~~e~~~ei~~~------------~ 214 (348)
.++...... .+|++++.. +.++-..+..| ..||+++|+.+|++.+++++-++|.+... -
T Consensus 40 ~v~~n~~~~-t~~iIa~~~-------~~k~~~~~~~g~~~IV~p~Wv~Dci~~~~llp~~p~~~~~~~~~~~~~~~~~~D 111 (263)
T 3ii6_X 40 YIVQNPGPD-TYCVIAGSE-------NIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYD 111 (263)
T ss_dssp EECSSCCTT-EEEEECSSC-------CHHHHHHHHSCSCCEECHHHHHHHHHHTSCCCCCGGGEEECCHHHHHHTTTTBC
T ss_pred EEEecCCCC-EEEEEeCCC-------CHHHHHHHhcCCCCEeehHHHHHHHhcCCcCCCCHHHHhhCCHHHHHHHHHhcc
Confidence 454444433 555565521 25555566676 89999999999999999999887765322 1
Q ss_pred cCCCC-----------------------chhh----hhHHhHhh---hC-CCCCcceEEEecCCC------CCCCCCChH
Q psy3910 215 DYPLA-----------------------KPFH----RSRENKEN---LL-PGLFNGLQVYLTKPW------PTSSPLSSE 257 (348)
Q Consensus 215 ~~~~~-----------------------~~~~----~~r~~~~~---~~-p~lf~g~~~~~~~~~------~~~~~~~~~ 257 (348)
.+|.+ .... ...+.... .. ..||+||.||+...- ........+
T Consensus 112 ~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~ 191 (263)
T 3ii6_X 112 CYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLA 191 (263)
T ss_dssp TTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHH
T ss_pred ccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchhhCCeEEEEecccccCCcccccchhHHH
Confidence 12211 0000 00111100 11 248999999996510 000112334
Q ss_pred HHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCc--cc-c--cccccccccchHHHHH
Q psy3910 258 DMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALP--RR-L--YNMEHVKALGLSWVRA 332 (348)
Q Consensus 258 ~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~--~~~~~~~~~~~~W~~d 332 (348)
-++.+++.+||++..... ..+||+|+-++.... .. + .....++.|+.+||.|
T Consensus 192 ~~~~~i~~~GG~v~~~l~-----------------------~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~iV~~~Wv~d 248 (263)
T 3ii6_X 192 IKALELRFHGAKVVSCLA-----------------------EGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTD 248 (263)
T ss_dssp HHHHHHHHTTCEEESSCC-----------------------TTCCEEEECSCCTTHHHHHHHHHTCSSCCEEEETHHHHH
T ss_pred HHHHHHHccCCEEecCCC-----------------------CCceEEEECCCCccHHHHHHHHhhcCCCCEEeChHHHHH
Confidence 568999999999986421 127888887643211 11 1 1124678899999999
Q ss_pred HHhhccccCCCCC
Q psy3910 333 CVEQFEIVQPKSP 345 (348)
Q Consensus 333 ci~~~~l~~~~~~ 345 (348)
||..-+++|.+.|
T Consensus 249 ci~~~~~l~E~~Y 261 (263)
T 3ii6_X 249 SIDKCELQEENQY 261 (263)
T ss_dssp HHHTTSCCCGGGT
T ss_pred HHHcCCcCCHhhC
Confidence 9999999987743
No 134
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=98.90 E-value=2.3e-09 Score=81.32 Aligned_cols=84 Identities=17% Similarity=0.420 Sum_probs=63.5
Q ss_pred CCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCc
Q psy3910 234 PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALP 313 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (348)
..+|.||.||+.+ |. ...+..|..+++.+||+++... + ..+||+|+-.+....
T Consensus 38 ~~lF~g~~i~i~G-~~---~~~~~~L~~~i~~~Gg~v~~~l------~-----------------~~vTHvI~~~~~~~~ 90 (132)
T 1wf6_A 38 EDLLDGCRIYLCG-FS---GRKLDKLRRLINSGGGVRFNQL------N-----------------EDVTHVIVGDYDDEL 90 (132)
T ss_dssp TTTTTTCEEEEES-CC---SHHHHHHHHHHHHTTCEEESSC------C-----------------SSCCEEEESSCCSHH
T ss_pred ccccCCEEEEEEC-CC---hHHHHHHHHHHHHCCCEEeCcC------C-----------------CCCeEEEECCchHHH
Confidence 4799999999998 55 6788999999999999997531 1 238898886543111
Q ss_pred cccc--ccccccccchHHHHHHHhhccccCCCC
Q psy3910 314 RRLY--NMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 314 ~~~~--~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
.... ...+++.|+.+||.|||..-+++|.+.
T Consensus 91 ~~~~~~~~~~~~iV~~~Wv~dsi~~~~ll~e~~ 123 (132)
T 1wf6_A 91 KQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEP 123 (132)
T ss_dssp HHHHHHSCCCCCEEEHHHHHHHHHHSSCCCSGG
T ss_pred HHHHHhhCCCCeEechHHHHHHHHcCCcCCHhh
Confidence 1111 124688999999999999999999884
No 135
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.84 E-value=5.3e-09 Score=71.85 Aligned_cols=79 Identities=19% Similarity=0.437 Sum_probs=58.7
Q ss_pred hhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEecc
Q psy3910 230 ENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSE 309 (348)
Q Consensus 230 ~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 309 (348)
.+.+|.+|.|+.||+.+.++ ....|++.+.++||+|+... . ....||+| -+.
T Consensus 10 ~~~LpdiFsg~~~~l~~~v~-----~~~~l~RyiiAfgG~v~~~~------~----------------~~~vTHvI-~~~ 61 (88)
T 3pc7_A 10 TKVLLDIFTGVRLYLPPSTP-----DFSRLRRYFVAFDGDLVQEF------D----------------MTSATHVL-GSR 61 (88)
T ss_dssp CCCCCCCSTTCEECCCTTST-----THHHHHHHHHHTTCEECCGG------G----------------GGGCSEEE-SCC
T ss_pred cCcCChhhcCeEEEccCCcC-----chhhheeeeeecCCEEeccc------C----------------CCcCeEEe-cCC
Confidence 45779999999999988655 44799999999999997621 0 01245555 222
Q ss_pred CCCcccccccccccccchHHHHHHHhhccccCCC
Q psy3910 310 EALPRRLYNMEHVKALGLSWVRACVEQFEIVQPK 343 (348)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~ 343 (348)
+ .......|..+||.|||.+-+|||+.
T Consensus 62 ~-------~~~~~~~V~p~WI~dcI~k~~Ll~~~ 88 (88)
T 3pc7_A 62 D-------KNPAAQQVSPEWIWACIRKRRLVAPS 88 (88)
T ss_dssp T-------TCTTSEEECHHHHHHHHHHTSCCSCC
T ss_pred C-------cCCCCcEEchHHHHHHHhCCcccCCC
Confidence 1 23467789999999999999999973
No 136
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=98.81 E-value=3.4e-09 Score=77.34 Aligned_cols=86 Identities=13% Similarity=0.189 Sum_probs=62.8
Q ss_pred hCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-
Q psy3910 232 LLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE- 310 (348)
Q Consensus 232 ~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 310 (348)
..++.|.||.|++.+.+. ..+++|+++|+..||++.... + ..|||+|. ..+
T Consensus 11 ~~~~~l~g~~i~isg~~~----~~r~~l~~li~~~Gg~v~~~~------s-----------------~~~THlI~-~~~~ 62 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLS----KKQSELNGIAASLGADYRRSF------D-----------------ETVTHFIY-QGRP 62 (107)
T ss_dssp ---CTTTTCEEEECGGGG----GGHHHHHHHHHHTTCEEESSC------C-----------------TTCCEEEC-CCCT
T ss_pred cccCCCCCeEEEEeCCCh----HhHHHHHHHHHHcCCEEeccc------c-----------------CCceEEEe-cCCC
Confidence 446789999999999443 589999999999999997532 1 12778777 222
Q ss_pred ---CCcccccccccccccchHHHHHHHhhccccCCCCCC
Q psy3910 311 ---ALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSPY 346 (348)
Q Consensus 311 ---~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~~ 346 (348)
...-......+++.|+.+||.||+.+-+.+|.+ +|
T Consensus 63 ~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~~~l~e~-~Y 100 (107)
T 3l3e_A 63 NDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPES-LY 100 (107)
T ss_dssp TCCCHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGG-GC
T ss_pred CCCCHHHHHHHHCCCeEecHHHHHHHHHhCCCCchh-hC
Confidence 112223334679999999999999999999977 44
No 137
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=5.4e-09 Score=78.87 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=65.2
Q ss_pred CCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCc
Q psy3910 234 PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALP 313 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (348)
..+|.|+.|++.+.+ ...+++|+++|+..||++.... + ..|||+|........
T Consensus 20 ~~~f~g~~i~itG~~----~~~r~~l~~~i~~~Gg~v~~~~------s-----------------~~~ThLI~~~~~~~K 72 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQ----NPFRSELRDKALELGAKYRPDW------T-----------------RDSTHLICAFANTPK 72 (129)
T ss_dssp TTTSTTEEEEEESCC----TTHHHHHHHHHHHTTEEEESSC------C-----------------TTCCEEEESSSSCHH
T ss_pred cccCCCeEEEEeCCC----cHHHHHHHHHHHHcCCEEeCCc------C-----------------CCCeEEEecCCCChH
Confidence 468999999999943 4689999999999999987531 1 127888887655332
Q ss_pred ccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 314 RRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 314 ~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
.......++.+|+.+||.||+.+.+++|.+.|
T Consensus 73 ~~~A~~~gi~IV~~~Wl~d~~~~~~~l~e~~Y 104 (129)
T 2d8m_A 73 YSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRY 104 (129)
T ss_dssp HHHHHHHTCEEEETHHHHHHHHTTSCCCGGGG
T ss_pred HHHHHHCCCcEecHHHHHHHHHhCCcCChHhc
Confidence 23333458999999999999999999997643
No 138
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.64 E-value=4.1e-08 Score=83.56 Aligned_cols=85 Identities=9% Similarity=0.231 Sum_probs=58.6
Q ss_pred CCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCc
Q psy3910 234 PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALP 313 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (348)
..+|.|+.||+...+. .+++++|+++|+.+||+++... . ..++.||-+..+..
T Consensus 8 s~lF~G~~f~V~sg~~---~~~k~~L~~lI~~~GG~v~~n~-~-----------------------~~t~~iIa~~~~~k 60 (263)
T 3ii6_X 8 SNIFEDVEFCVMSGTD---SQPKPDLENRIAEFGGYIVQNP-G-----------------------PDTYCVIAGSENIR 60 (263)
T ss_dssp CCTTTTCEEEECCCC-----CCHHHHHHHHHHTTCEECSSC-C-----------------------TTEEEEECSSCCHH
T ss_pred cccCCCeEEEEEcCCC---CCCHHHHHHHHHHcCCEEEecC-C-----------------------CCEEEEEeCCCCHH
Confidence 4799999999965455 7899999999999999997521 0 02333443332211
Q ss_pred -ccccccccccccchHHHHHHHhhccccCCCCCC
Q psy3910 314 -RRLYNMEHVKALGLSWVRACVEQFEIVQPKSPY 346 (348)
Q Consensus 314 -~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~~ 346 (348)
....+..++..|..+||+|||.+-++||.. ||
T Consensus 61 ~~~~~~~g~~~IV~p~Wv~Dci~~~~llp~~-p~ 93 (263)
T 3ii6_X 61 VKNIILSNKHDVVKPAWLLECFKTKSFVPWQ-PR 93 (263)
T ss_dssp HHHHHHSCSCCEECHHHHHHHHHHTSCCCCC-GG
T ss_pred HHHHHhcCCCCEeehHHHHHHHhcCCcCCCC-HH
Confidence 111223358899999999999999999987 44
No 139
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.63 E-value=5.5e-08 Score=70.26 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC
Q psy3910 233 LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL 312 (348)
Q Consensus 233 ~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (348)
.-++|+||.+|+...-........+.+..+++..||++..+.. ..+||+|.-+++..
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~-----------------------~~vTHvV~~~~~~~ 60 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFN-----------------------KQVTHVIFKDGYQS 60 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCC-----------------------TTCCEEEEESCCHH
T ss_pred cccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccC-----------------------CCccEEEEeCCCCh
Confidence 3469999999997732211113557899999999999976431 13889888877622
Q ss_pred cccccccccccccchHHHHHHHhhccccCCCC
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
..++.+..+++.|+..||.||+...+.++-..
T Consensus 61 ~~~~A~~~~i~iV~~~Wv~~C~~~~~~vdE~~ 92 (107)
T 3pa6_A 61 TWDKAQKRGVKLVSVLWVEKCRTAGAHIDESL 92 (107)
T ss_dssp HHHHHHHHTCEEECHHHHHHHHHHTSCCCGGG
T ss_pred HHHHHhcCCCEEECHHHHHHHHHhCccCChhc
Confidence 22333444789999999999999999988763
No 140
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.40 E-value=8.6e-07 Score=76.71 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=83.0
Q ss_pred hccceeecHHHHHHHHhcCCCccCccceecccccCCCCchhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHH
Q psy3910 182 LSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRD 261 (348)
Q Consensus 182 ~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~~~~~~~~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~ 261 (348)
..|+.|+.+.|+.+|++.++.++...+ | .....|.|+.|++.| +. ...++++.+
T Consensus 73 ~~~~~iv~p~~v~~c~~~~~~lp~~~~----------P------------~y~~~l~g~~~~~tG-~~---~~~r~~l~~ 126 (298)
T 3olc_X 73 KLGCRIVGPQVVIFCMHHQRCVPRAEH----------P------------VYNMVMSDVTISCTS-LE---KEKREEVHK 126 (298)
T ss_dssp HHTCEEECHHHHHHHHHTTCCCCCCSS----------C------------BCCCTTTTCEEEEES-CC---HHHHHHHHH
T ss_pred HCCCCEECHHHHHHHHHhCCcCCCCCC----------c------------ccccccCCeEEEeCC-Cc---HHhHHHHHH
Confidence 458999999999999998876664321 1 111368999999998 33 348999999
Q ss_pred HHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCcccccccccccccchHHHHHHHhhccccC
Q psy3910 262 IFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQ 341 (348)
Q Consensus 262 li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~ 341 (348)
+|+..||++... ++ ..+||+|........-......++.+|+.+||.+|+..-+.++
T Consensus 127 ~i~~~GG~v~~~------~t-----------------~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~~ 183 (298)
T 3olc_X 127 YVQMMGGRVYRD------LN-----------------VSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKK 183 (298)
T ss_dssp HHHHTTCEECSS------CC-----------------TTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHTTC
T ss_pred HHHHCCCEEecC------cC-----------------CCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCcCC
Confidence 999999999753 11 1378888887664333344456899999999999999877664
Q ss_pred C
Q psy3910 342 P 342 (348)
Q Consensus 342 ~ 342 (348)
+
T Consensus 184 ~ 184 (298)
T 3olc_X 184 I 184 (298)
T ss_dssp C
T ss_pred c
Confidence 3
No 141
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.6e-08 Score=83.11 Aligned_cols=93 Identities=12% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCCCcceEEEecCCCCCC---CCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC
Q psy3910 234 PGLFNGLQVYLTKPWPTS---SPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE 310 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~---~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 310 (348)
..||.||.||+...+..+ ...++++|+.+|+++||+++.. +....+. . .+++||-+..
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~-~~~~t~~----------------~--~~~~iI~~~~ 63 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYN-VILKRHS----------------I--GDVRLISCKT 63 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCC-SSCCCCC----------------S--SCCEEEECSC
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeec-CCCCccC----------------c--cceEEEecCC
Confidence 369999999996544311 2358999999999999998652 2211100 0 0233444433
Q ss_pred CCcccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 311 ALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
+..-..+...++..|..+||+|||.+-+|+|+..+
T Consensus 64 t~k~~~~~~~~~~vV~p~Wv~dci~~~~llp~~~y 98 (264)
T 1z56_C 64 TTECKALIDRGYDILHPNWVLDCIAYKRLILIEPN 98 (264)
T ss_dssp CGGGGGGTTTTCCCBCSSTTHHHHSSCSCCCCCSC
T ss_pred cHHHHHHHhCCCCEEechHHHHHhhcCCCCCCChH
Confidence 22222222234788999999999999999999854
No 142
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.35 E-value=6.4e-07 Score=79.58 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=69.0
Q ss_pred hhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC
Q psy3910 231 NLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE 310 (348)
Q Consensus 231 ~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 310 (348)
+....+|.||.++++|.++....+.+..+.++++..||++.... + ..+||+|...+.
T Consensus 277 ~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~v------s-----------------~~vTHLVa~~~~ 333 (372)
T 3ef0_A 277 KMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF------S-----------------VPPTHLIAAKIR 333 (372)
T ss_dssp HHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSS------S-----------------SCCSEEEECSCC
T ss_pred HHHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcC------C-----------------CCceEEEEcCCC
Confidence 34457899999999997764445678999999999999997642 1 138888888766
Q ss_pred CCccccccc-ccccccchHHHHHHHhhccccCCC
Q psy3910 311 ALPRRLYNM-EHVKALGLSWVRACVEQFEIVQPK 343 (348)
Q Consensus 311 ~~~~~~~~~-~~~~~~~~~W~~dci~~~~l~~~~ 343 (348)
+....+... ++++.|+..||.||+.+.+.+|-.
T Consensus 334 t~K~~~A~~~~~I~IV~~~Wl~~c~~~~~~vdE~ 367 (372)
T 3ef0_A 334 TEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPES 367 (372)
T ss_dssp CHHHHHHHHSSSCCEEEHHHHHHHHHTTSCCCGG
T ss_pred chHHHHHHhcCCCEEEcHHHHHHHHHhCCcCChh
Confidence 433333333 478999999999999999999866
No 143
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.31 E-value=9.3e-07 Score=74.97 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCCCcceEEEecCCCCCC-------------------------CCCChHHHHHHHHHcCceeeccCCCCCccccccccee
Q psy3910 234 PGLFNGLQVYLTKPWPTS-------------------------SPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVM 288 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~-------------------------~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~ 288 (348)
.++|.|+.|++++...+. ....+++|+++|+.+||+|+....... .+
T Consensus 13 ~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~-~~------- 84 (259)
T 1kzy_C 13 KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQ-CN------- 84 (259)
T ss_dssp TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTT-TT-------
T ss_pred CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccc-cc-------
Confidence 469999999998854421 135788999999999999986533210 00
Q ss_pred eccCCCCccccCCceEEEeccC-CCcccccccccccccchHHHHHHHhhccccCCCC
Q psy3910 289 YHVNRPQHRLYNLSQAIVYSEE-ALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 289 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
...++++|.-... +..-......++.+|+.+||.||+..-+++|.++
T Consensus 85 ---------~~~~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~ 132 (259)
T 1kzy_C 85 ---------TAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRN 132 (259)
T ss_dssp ---------TTCEEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGG
T ss_pred ---------cCCCeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHH
Confidence 0113333332211 1111111134789999999999999999999764
No 144
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.27 E-value=7.9e-07 Score=80.09 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=69.1
Q ss_pred CCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCc
Q psy3910 234 PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALP 313 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (348)
.+.|.||.|+|.|.++....+.+..+.++++..||++.... + ..|||+|...+.+..
T Consensus 350 ~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~v------s-----------------~~vTHLVa~~~~t~K 406 (442)
T 3ef1_A 350 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF------S-----------------VPPTHLIAAKIRTEK 406 (442)
T ss_dssp HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSS------S-----------------SCCSEEEECSCCCHH
T ss_pred hcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCC------C-----------------CCceEEEeCCCCCHH
Confidence 45799999999998865545688999999999999997532 1 138899998776433
Q ss_pred cccccc-ccccccchHHHHHHHhhccccCCCCCC
Q psy3910 314 RRLYNM-EHVKALGLSWVRACVEQFEIVQPKSPY 346 (348)
Q Consensus 314 ~~~~~~-~~~~~~~~~W~~dci~~~~l~~~~~~~ 346 (348)
-.+... ++++.|+..||.||+.+.+.+|-. ||
T Consensus 407 ~~~A~~~g~IkIVs~~WL~dcl~~~krldE~-~Y 439 (442)
T 3ef1_A 407 VKKAVSMGNIKVVKLNWLTESLSQWKRLPES-DY 439 (442)
T ss_dssp HHHHHHHSSSEEEEHHHHHHHHHHTSCCCGG-GT
T ss_pred HHHHHhcCCCEEEeHHHHHHHHHcCCcCChh-cc
Confidence 333333 369999999999999999999766 44
No 145
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.23 E-value=1.1e-06 Score=73.73 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=59.2
Q ss_pred CCcceEEEecCC--CCCCCCCChHHHHHHHHHcCceeecc-----CCCCC-ccc-ccccceeeccCCCCccccCCc-eEE
Q psy3910 236 LFNGLQVYLTKP--WPTSSPLSSEDMRDIFKRGGATLLNR-----EPDPE-SMN-LSESSVMYHVNRPQHRLYNLS-QAI 305 (348)
Q Consensus 236 lf~g~~~~~~~~--~~~~~~~~~~~l~~li~~~Gg~v~~~-----~p~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~~i 305 (348)
+|+||.|++.+. +. ...+++|+++|+.+||+|+.. ...+. +.. .. . +. .+........ .++
T Consensus 2 lF~g~~F~ls~~~~~~---~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~---~--~~-k~~~~~~~~~~t~l 72 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHED---AYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKL---R--HL-KPQKRSKSWNQAFV 72 (241)
T ss_dssp TTTTEEEEECCCSSTT---SSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CC---C--SC-CBCGGGGGCSEEEE
T ss_pred CCCCcEEEEecCCCCc---hhhHHHHHHHHHHCCCEEecCcchhhccCccccccccc---c--cc-ccccccccccceEE
Confidence 799999999996 44 679999999999999999875 11111 000 00 0 00 0000010011 222
Q ss_pred EeccCCCccccc---ccccccccchHHHHHHHhhccccCCCC
Q psy3910 306 VYSEEALPRRLY---NMEHVKALGLSWVRACVEQFEIVQPKS 344 (348)
Q Consensus 306 ~~~~~~~~~~~~---~~~~~~~~~~~W~~dci~~~~l~~~~~ 344 (348)
|-+.... ..++ ...++.+|+.+||.|||.+=+++|+.+
T Consensus 73 ia~~~~r-t~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ 113 (241)
T 2vxb_A 73 VSDTFSR-KVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSP 113 (241)
T ss_dssp ECSSCCC-CHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGG
T ss_pred EcCCCCC-cHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhh
Confidence 3332211 1122 234689999999999999999998875
No 146
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.16 E-value=1.3e-06 Score=62.93 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=60.3
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCC--C
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEA--L 312 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 312 (348)
.+|+||.||+.+. ....+.++-+.++++.+||++++... ..+||+|+-++.+ .
T Consensus 10 ~~F~g~~v~~~p~--~~~~~r~~i~~~~a~~~Ga~v~~~~~-----------------------~~vTHVVvd~~~s~~~ 64 (106)
T 2jw5_A 10 EWLSSLRAHVVRT--GIGRARAELFEKQIVQHGGQLCPAQG-----------------------PGVTHIVVDEGMDYER 64 (106)
T ss_dssp GCGGGSCCCBCTT--TCCSSSTTHHHHHHHHTTCCCCSTTC-----------------------TTCCEEEECSSSCHHH
T ss_pred CEeCCeEEEEEec--CCchHHHHHHHHHHHHcCCEEeeccC-----------------------CCccEEEEcCCCCHHH
Confidence 5899999998662 23356677788899999999976421 1388888853221 1
Q ss_pred ccccc----ccccccccchHHHHHHHhhccccCCCCC
Q psy3910 313 PRRLY----NMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 313 ~~~~~----~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
...+. -..+++.|..+|+.|||..-++++.+.+
T Consensus 65 ~l~~l~~~~l~~~~~iV~~~Wv~dci~~~~llde~~y 101 (106)
T 2jw5_A 65 ALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGF 101 (106)
T ss_dssp HHHHTTCSSCCSSCEEEEHHHHHHHHHTCSCCCGGGT
T ss_pred HHHHHhhcccCCCcEEecCchHHHHHhcCcccCcccc
Confidence 00011 1145778999999999999999999854
No 147
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=4.5e-06 Score=57.02 Aligned_cols=83 Identities=14% Similarity=0.342 Sum_probs=62.3
Q ss_pred CCCCcceEEEecCCC-CCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC
Q psy3910 234 PGLFNGLQVYLTKPW-PTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL 312 (348)
Q Consensus 234 p~lf~g~~~~~~~~~-~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (348)
-+.|.|..||+...- ...+....++|.++|++.||+|+...|+..+-. . +|.+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~---------------------~-yVVS---- 62 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKEN---------------------V-FIVS---- 62 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSC---------------------C-CCBC----
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCC---------------------e-EEEe----
Confidence 356999999998852 112356789999999999999999888554210 0 1111
Q ss_pred cccccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
-|+..+..+|+..+|..||.+=.||+.+||
T Consensus 63 ---pyN~t~LpTVtpTYI~aC~~~nTLLnv~~Y 92 (106)
T 2l42_A 63 ---PYNHTNLPTVTPTYIKACCQSNSLLNMENY 92 (106)
T ss_dssp ---TTCCCSSSBCCTTHHHHHHHSTTSCGGGGC
T ss_pred ---CCCCCCCccccHHHHHHHHhcCceeccccc
Confidence 245567889999999999999999998865
No 148
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.95 E-value=2.3e-05 Score=54.71 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCCcc
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEALPR 314 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 314 (348)
..|.|..|+|.|.+. . +|++++++|+..||+|.+...+. ++++|+-+......
T Consensus 6 ~~l~G~~~v~TG~l~---~-~R~e~~~~i~~~Gg~v~~sVskk-----------------------t~~LV~g~~~gsK~ 58 (92)
T 1l7b_A 6 EALKGLTFVITGELS---R-PREEVKALLRRLGAKVTDSVSRK-----------------------TSYLVVGENPGSKL 58 (92)
T ss_dssp CSSTTCEEECSTTTT---S-CHHHHHHHHHHTTCEEESCCSSS-----------------------CCCBEECSSSSTTH
T ss_pred CCcCCcEEEEecCCC---C-CHHHHHHHHHHcCCEEeCcccCC-----------------------eeEEEeCCCCChHH
Confidence 458899999999887 6 99999999999999997642111 22233333223344
Q ss_pred cccccccccccchHHHHHHHhhc
Q psy3910 315 RLYNMEHVKALGLSWVRACVEQF 337 (348)
Q Consensus 315 ~~~~~~~~~~~~~~W~~dci~~~ 337 (348)
.+....++..++.+|++++|...
T Consensus 59 ~kA~~lgI~Ii~E~~f~~~l~~~ 81 (92)
T 1l7b_A 59 EKARALGVPTLTEEELYRLLEAR 81 (92)
T ss_dssp HHHHCSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHcCCcEEeHHHHHHHHHhc
Confidence 45566789999999999999753
No 149
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=97.95 E-value=4.5e-06 Score=60.56 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred ccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccce
Q psy3910 130 TSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFE 209 (348)
Q Consensus 130 ~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~e 209 (348)
+..+..+...+ |+ .+...+... +||+++..+ ....+.++..+...|.+||+.+|+.+|++.+++++|++|.
T Consensus 31 r~~l~~li~~~--Gg---~v~~~~s~~-~THlI~~~~---~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~~~l~e~~Y~ 101 (107)
T 3l3e_A 31 QSELNGIAASL--GA---DYRRSFDET-VTHFIYQGR---PNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLYP 101 (107)
T ss_dssp HHHHHHHHHHT--TC---EEESSCCTT-CCEEECCCC---TTCCCHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGCC
T ss_pred HHHHHHHHHHc--CC---EEeccccCC-ceEEEecCC---CCCCCHHHHHHHHCCCeEecHHHHHHHHHhCCCCchhhCC
Confidence 34444444444 66 666666666 999998532 2223567777788999999999999999999999999999
Q ss_pred eccc
Q psy3910 210 ILGT 213 (348)
Q Consensus 210 i~~~ 213 (348)
+...
T Consensus 102 ~~~~ 105 (107)
T 3l3e_A 102 HTYN 105 (107)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8654
No 150
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.95 E-value=2.1e-05 Score=64.26 Aligned_cols=168 Identities=14% Similarity=0.199 Sum_probs=101.8
Q ss_pred cceeeccc-cccceeecCCCCCchHhhHHHHHHHHhccc--eeecHHHHHHHHhc---CC------CccCccceeccccc
Q psy3910 148 IIVSTLLQ-SNVNILLVNGTPERTCIATCNVLRAILSGI--KAVDYTWISRSLEI---GK------VLPVEEFEILGTVD 215 (348)
Q Consensus 148 ~iv~~l~~-~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~--~iv~~~wi~~~~~~---~~------~~~e~~~ei~~~~~ 215 (348)
.+++.... ...++++.+ ...||.|+|.++..|- ++++.+||.+|++. ++ .++.++|.+.+.
T Consensus 49 ~Iv~d~~~~~~~n~LiAP-----kilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY~L~d~-- 121 (256)
T 3t7k_A 49 KIFDNIKETDKLNCIFAP-----KILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFDYEINGI-- 121 (256)
T ss_dssp EECSSCCGGGCCCEEECS-----SCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC-------CCCCCSSTTBCTTC--
T ss_pred EEEecCcccCCCCEEEcC-----chhhHHHHHHHhccCccceEeCHHHHHHHHHHhhcCCcccccccCChhhccCCCc--
Confidence 44444432 348899988 6678999999999964 69999999999988 66 777888888775
Q ss_pred CCCCchhhhhHHhHhhhCCCCCcceE---EEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCccccc---ccceee
Q psy3910 216 YPLAKPFHRSRENKENLLPGLFNGLQ---VYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLS---ESSVMY 289 (348)
Q Consensus 216 ~~~~~~~~~~r~~~~~~~p~lf~g~~---~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~---~~~~~~ 289 (348)
. .....+.+...+||.|.. +.+...- .--.+.+..+++++||.=++.-|+. .++.. .+..+-
T Consensus 122 ---~----~E~l~r~~~~gkLf~~~~I~ciNls~dI----~GG~e~issIleahG~~~~~~l~~~-~~~~~dl~~n~~~~ 189 (256)
T 3t7k_A 122 ---N----ESIISKTKLPTKVFERANIRCINLVNDI----PGGVDTIGSVLKAHGIEKINVLRSK-KCTFEDIIPNDVSK 189 (256)
T ss_dssp ---C----HHHHHHTTSSSCHHHHTTCCEEEEETTC----TTCHHHHHHHHHHTTCCEEEEECTT-TCCGGGCCCCC---
T ss_pred ---c----hhHHhhhccccccccCCcceeeeeccCC----CCCHHHHHHHHHHcCCceeeecccc-cccHHHhhhccccc
Confidence 2 111123445578999994 4457642 4577889999999999754443431 11111 000011
Q ss_pred ccCCCCccccCCceEEEeccC-CCccccc-------ccccccccchHHHHHHHhhcccc
Q psy3910 290 HVNRPQHRLYNLSQAIVYSEE-ALPRRLY-------NMEHVKALGLSWVRACVEQFEIV 340 (348)
Q Consensus 290 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~~-------~~~~~~~~~~~W~~dci~~~~l~ 340 (348)
...+.+ ..||+.-.. +....+. +...+.+|.|+|...||-+.++-
T Consensus 190 ~~~~~~------~~~ILia~K~~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~levd 242 (256)
T 3t7k_A 190 QENGGI------FKYVLIVTKASQVKKFTKLINDRDKNETILIVEWNWCVESIFHLNVD 242 (256)
T ss_dssp -----C------CSEEEECSCHHHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTTSCC
T ss_pred cccCCC------CCEEEEEccHHHHHHHHHHhhcccccceEEEEEcHHHHHHHhheeec
Confidence 111111 112333332 2111111 12457889999999999988763
No 151
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.91 E-value=1.9e-05 Score=57.23 Aligned_cols=82 Identities=6% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC----
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE---- 310 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 310 (348)
..|.|..|.|.|.+. . +|++++++|+..||+|....-+ -|.|+|..++
T Consensus 9 ~~l~G~~~ViTG~l~---~-~R~e~k~~ie~~Ggkv~~sVsk------------------------kT~~lV~g~~~e~~ 60 (113)
T 2cok_A 9 KPLSNMKILTLGKLS---R-NKDEVKAMIEKLGGKLTGTANK------------------------ASLCISTKKEVEKM 60 (113)
T ss_dssp CSSSSCEEEECSCCS---S-CHHHHHHHHHHTTCEEESCSTT------------------------CSEEECCHHHHHHC
T ss_pred CCcCCCEEEEEecCC---C-CHHHHHHHHHHCCCEEcCcccc------------------------CccEEEECCCCCCC
Confidence 358899999999886 5 8999999999999999764211 2233444421
Q ss_pred CCcccccccccccccchHH----------HHHHHhhccccCCCC
Q psy3910 311 ALPRRLYNMEHVKALGLSW----------VRACVEQFEIVQPKS 344 (348)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~W----------~~dci~~~~l~~~~~ 344 (348)
.....+.+.-+|..|+.+| +.+||..++++|...
T Consensus 61 gsKl~kA~~lgI~IvsE~~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 61 NKKMEEVKEANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp CHHHHHHHHTTCCEECTHHHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred ChHHHHHHHCCCcEEeHHHHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 2223355567899999999 899999999998764
No 152
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.89 E-value=3.3e-05 Score=55.69 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=56.9
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-C-C
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-A-L 312 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~ 312 (348)
..|.|..|+|.|.+. ..++++++++|+..||+|.+...+ -|.|+|..++ . .
T Consensus 31 ~~l~G~~~v~TG~l~---~~~R~e~~~~i~~~Gg~v~~sVSk------------------------kTd~LV~G~~~g~s 83 (109)
T 2k6g_A 31 NCLEGLIFVITGVLE---SIERDEAKSLIERYGGKVTGNVSK------------------------KTNYLVMGRDSGQS 83 (109)
T ss_dssp TTTTTCEEEEESBCS---SCCHHHHHHHHHHTTCEEESSCCT------------------------TCCEEEECBCCCHH
T ss_pred CCCCCCEEEEeeeCC---CCCHHHHHHHHHHcCCEeeCcccC------------------------CceEEEECCCCChH
Confidence 458899999999887 789999999999999999764211 2233444433 2 3
Q ss_pred cccccccccccccchHHHHHHHhhcc
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQFE 338 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~~~ 338 (348)
...+....++..++.+|+++.|...+
T Consensus 84 K~~kA~~lgI~Ii~E~~f~~ll~~~E 109 (109)
T 2k6g_A 84 KSDKAAALGTKIIDEDGLLNLIRNLE 109 (109)
T ss_dssp HHHHHHHHTCEEECHHHHHHHHHHTC
T ss_pred HHHHHHHcCCeEEeHHHHHHHHHhCC
Confidence 33445566899999999999997653
No 153
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=2.7e-05 Score=56.85 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC--
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL-- 312 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 312 (348)
.+|.||.+|+... . ...-.++-+.++++..||+|.++. . ...||+|+ ++...
T Consensus 19 ~~F~g~~iy~v~~-~-~g~~R~~~l~~l~r~~G~~V~~~l------s-----------------~~VTHVVv-e~~~~~e 72 (120)
T 2coe_A 19 IKFQDLVVFILEK-K-MGTTRRALLMELARRKGFRVENEL------S-----------------DSVTHIVA-ENNSGSD 72 (120)
T ss_dssp CSCTTCEEEEECT-T-TCHHHHHHHHHHHHHHTCEECSSC------C-----------------TTCCEEEE-SSCCHHH
T ss_pred cccCCeEEEEeec-c-cchHHHHHHHHHHHHcCCEEeecc------C-----------------CCcCEEEe-cCCCHHH
Confidence 6899999999773 2 334567889999999999998642 1 12778888 33211
Q ss_pred ccccc------ccccccccchHHHHHHHhhccccCCCCCC
Q psy3910 313 PRRLY------NMEHVKALGLSWVRACVEQFEIVQPKSPY 346 (348)
Q Consensus 313 ~~~~~------~~~~~~~~~~~W~~dci~~~~l~~~~~~~ 346 (348)
-..+. ...+.+.|...||.||+..-+++|.++.|
T Consensus 73 ~~~~l~~~~l~~~~~~~lv~i~Wl~esmk~g~lv~ee~~~ 112 (120)
T 2coe_A 73 VLEWLQAQKVQVSSQPELLDVSWLIECIGAGKPVEMTGKH 112 (120)
T ss_dssp HHHHHHHCCCCCSSCCEEEEHHHHHHHHHTTSCCCCSSSS
T ss_pred HHHHHhccccccccccEEeecHHHHHHHHcCCccCcccce
Confidence 11111 22357889999999999999999987654
No 154
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=8.8e-05 Score=53.58 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC--CC
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE--AL 312 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 312 (348)
..|.|..|+|.|.|. ..+|++++++|+..||+|.+...+ -|.|+|.... ..
T Consensus 21 ~~l~G~~~v~TG~l~---~~~R~e~~~~i~~~Ggkv~~sVSk------------------------kTd~LV~G~~~g~s 73 (112)
T 2ebu_A 21 NCLEGLIFVITGVLE---SIERDEAKSLIERYGGKVTGNVSK------------------------KTNYLVMGRDSGQS 73 (112)
T ss_dssp SSSTTCEEEECSCCS---SSCHHHHHHHHHHTTCEECSSCCS------------------------SCCEEEECSSCCSH
T ss_pred CCcCCCEEEEeeeCC---CCCHHHHHHHHHHcCCEEeccccC------------------------CeeEEEecCCCChH
Confidence 358899999999887 789999999999999999753211 2233444433 23
Q ss_pred cccccccccccccchHHHHHHHhh
Q psy3910 313 PRRLYNMEHVKALGLSWVRACVEQ 336 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~W~~dci~~ 336 (348)
...+.+..++..++.+|+++.|..
T Consensus 74 Kl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 74 KSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp HHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEeHHHHHHHHhh
Confidence 344556668999999999999974
No 155
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.64 E-value=3e-05 Score=64.54 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=61.0
Q ss_pred CCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCC---C
Q psy3910 236 LFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEA---L 312 (348)
Q Consensus 236 lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 312 (348)
-+.++.|++.+ +. ...++.|+++++..||++.... + ..|||+|+-.++. .
T Consensus 4 ~~~~~~i~~sg-~~---~~~~~~l~~~~~~~G~~~~~~~------~-----------------~~~THlI~~~~~~~~~~ 56 (229)
T 1l0b_A 4 AERDISMVVSG-LT---PKEVMIVQKFAEKYRLALTDVI------T-----------------EETTHVIIKTDAEFVCE 56 (229)
T ss_dssp CCCCCEEEEES-CC---HHHHHHHHHHHHHTTCEECSSC------C-----------------SSCCEEEECBCTTSEEC
T ss_pred CCCCeEEEEcC-CC---HHHHHHHHHHHHHcCCEEeCCc------C-----------------CCCCEEEEcCCcccccc
Confidence 35789999988 44 3467889999999999987531 1 2389999887631 1
Q ss_pred ccccc---ccccccccchHHHHHHHhhccccCCCCCCC
Q psy3910 313 PRRLY---NMEHVKALGLSWVRACVEQFEIVQPKSPYE 347 (348)
Q Consensus 313 ~~~~~---~~~~~~~~~~~W~~dci~~~~l~~~~~~~~ 347 (348)
...++ -..+++.|+.+||.||+..-+++|.+ ||+
T Consensus 57 rt~K~~~a~~~g~~IV~~~Wl~~~~~~~~~~~e~-~y~ 93 (229)
T 1l0b_A 57 RTLKYFLGIAGGKWIVSYSWVIKSIQERKLLSVH-EFE 93 (229)
T ss_dssp CCHHHHHHHHTTCEEEETHHHHHHHTTTSCCCSG-GGB
T ss_pred ccHHHHHHHHCCCcEecHHHHHHHHHCCCcCChH-HeE
Confidence 11122 22478899999999999999999876 664
No 156
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.62 E-value=3.7e-05 Score=63.32 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=59.7
Q ss_pred CcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCccc
Q psy3910 237 FNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPRR 315 (348)
Q Consensus 237 f~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 315 (348)
..|+.++++| |. ...++.+.++|+..||+++.. ...|||+|.-... +..-.
T Consensus 14 ~~~~~i~~SG-~~---~~~~~~l~~~i~~lGg~v~~~------------------------~~~~THLI~~~~~rT~K~l 65 (219)
T 3sqd_A 14 ELTPFVLFTG-FE---PVQVQQYIKKLYILGGEVAES------------------------AQKCTHLIASKVTRTVKFL 65 (219)
T ss_dssp GGCCEEEECS-CC---HHHHHHHHHHHHHTTCEECSS------------------------GGGCSEEECSSCCCCHHHH
T ss_pred CCCeEEEEeC-CC---hHHHHHHHHHHHHCCCEEeCC------------------------CCCceEEEECCCCCCHHHH
Confidence 4699999999 65 446788999999999998652 1248887776543 22222
Q ss_pred ccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 316 LYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 316 ~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
..-..+.+.|+.+||.||+..-+++|.++|
T Consensus 66 ~A~~~g~~IVs~~Wl~~c~~~~~~l~e~~y 95 (219)
T 3sqd_A 66 TAISVVKHIVTPEWLEECFRCQKFIDEQNY 95 (219)
T ss_dssp HHTTTCSEEECHHHHHHHHHHTSCCCSGGG
T ss_pred HHHHcCCCEecHHHHHHHHHcCCCCChHhc
Confidence 223356889999999999999999987643
No 157
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=97.56 E-value=7e-05 Score=53.88 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceeccc
Q psy3910 143 GADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGT 213 (348)
Q Consensus 143 ~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~ 213 (348)
|+ .+.+.+... +||+++........ -.+.-.+..||+.+|+.+|++.++.+||+.|.+...
T Consensus 38 GA---~v~~~l~~~-vTHvV~~~~~~~~~------~~A~~~~i~iV~~~Wv~~C~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 38 GA---KVSKTFNKQ-VTHVIFKDGYQSTW------DKAQKRGVKLVSVLWVEKCRTAGAHIDESLFPAANM 98 (107)
T ss_dssp TC---EECSSCCTT-CCEEEEESCCHHHH------HHHHHHTCEEECHHHHHHHHHHTSCCCGGGSBCCCT
T ss_pred CC---EEecccCCC-ccEEEEeCCCChHH------HHHhcCCCEEECHHHHHHHHHhCccCChhcccCCCC
Confidence 66 777777776 99999985543222 224445789999999999999999999999998765
No 158
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.50 E-value=5.2e-05 Score=62.35 Aligned_cols=82 Identities=10% Similarity=0.147 Sum_probs=58.8
Q ss_pred cceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCC---Ccc
Q psy3910 238 NGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEA---LPR 314 (348)
Q Consensus 238 ~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~ 314 (348)
.++.|++.+ +. ...++.|.++++..||++.... + ..|||+|+-.++. ...
T Consensus 3 ~~~~~~~sg-~~---~~~~~~l~~~~~~~G~~~~~~~------~-----------------~~~THli~~~~~~~~~~rt 55 (214)
T 1t15_A 3 KRMSMVVSG-LT---PEEFMLVYKFARKHHITLTNLI------T-----------------EETTHVVMKTDAEFVCERT 55 (214)
T ss_dssp -CCEEEEES-CC---HHHHHHHHHHHHHHTCEECSSC------C-----------------TTCCEEEECBCTTSEECCB
T ss_pred CcEEEEECC-CC---HHHHHHHHHHHHHhCCEEeCcc------C-----------------CCCcEEEEeCCcccchhhh
Confidence 367788888 44 4578889999999999987532 1 2389999987641 111
Q ss_pred ccc---ccccccccchHHHHHHHhhccccCCCCCCC
Q psy3910 315 RLY---NMEHVKALGLSWVRACVEQFEIVQPKSPYE 347 (348)
Q Consensus 315 ~~~---~~~~~~~~~~~W~~dci~~~~l~~~~~~~~ 347 (348)
.++ -..+++.|+.+||.||+..-+++|.+ ||+
T Consensus 56 ~k~~~a~~~g~~IV~~~Wl~~~~~~~~~~~e~-~y~ 90 (214)
T 1t15_A 56 LKYFLGIAGGKWVVSYFWVTQSIKERKMLNEH-DFE 90 (214)
T ss_dssp HHHHHHHHTTCEEEETHHHHHHHHTTSCCCGG-GGB
T ss_pred HHHHHHHhcCCEEeCHHHHHHHHHCCCcCChH-HeE
Confidence 122 22478899999999999999999876 664
No 159
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=8.2e-05 Score=54.30 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHH----HhccceeecHHHHHHHHhcCCCcc
Q psy3910 129 QTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRA----ILSGIKAVDYTWISRSLEIGKVLP 204 (348)
Q Consensus 129 ~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~----i~~g~~iv~~~wi~~~~~~~~~~~ 204 (348)
..+.+..+.... |+ .+++.+.+. +||+++. +.........+.. ...+..+|+..|+.+|++.++.++
T Consensus 37 R~~~l~~l~r~~--G~---~V~~~ls~~-VTHVVve---~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl~esmk~g~lv~ 107 (120)
T 2coe_A 37 RRALLMELARRK--GF---RVENELSDS-VTHIVAE---NNSGSDVLEWLQAQKVQVSSQPELLDVSWLIECIGAGKPVE 107 (120)
T ss_dssp HHHHHHHHHHHH--TC---EECSSCCTT-CCEEEES---SCCHHHHHHHHHHCCCCCSSCCEEEEHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHc--CC---EEeeccCCC-cCEEEec---CCCHHHHHHHHhccccccccccEEeecHHHHHHHHcCCccC
Confidence 334444444444 77 788888655 9999996 2244444444431 223568999999999999999999
Q ss_pred Cccceeccc
Q psy3910 205 VEEFEILGT 213 (348)
Q Consensus 205 e~~~ei~~~ 213 (348)
|+.+.....
T Consensus 108 ee~~~~l~~ 116 (120)
T 2coe_A 108 MTGKHQLSG 116 (120)
T ss_dssp CSSSSBCCC
T ss_pred cccceEecc
Confidence 988887766
No 160
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.47 E-value=8.7e-05 Score=60.84 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=58.3
Q ss_pred ceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC---CCccc
Q psy3910 239 GLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE---ALPRR 315 (348)
Q Consensus 239 g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~ 315 (348)
++.|++.+ +. ...++.|.++++..||++.... + ..|||+|+-.+. +..-.
T Consensus 2 ~~vi~~sg-~~---~~~~~~l~~~~~~~G~~~~~~~------~-----------------~~~THlV~~~~~~~rt~K~l 54 (210)
T 2nte_A 2 PLVLIGSG-LS---SEQQKMLSELAVILKAKKYTEF------D-----------------STVTHVVVPGDAVQSTLKCM 54 (210)
T ss_dssp CCEEEESS-CC---HHHHHHHHHHHHHTTCEEESSC------C-----------------TTCCEEEESSSSCCCSHHHH
T ss_pred CEEEEECC-CC---HHHHHHHHHHHHHcCCEEeCCC------C-----------------CCCeEEEEcCCCcchHHHHH
Confidence 56778877 54 4578889999999999997631 1 138999997743 21111
Q ss_pred ccccccccccchHHHHHHHhhccccCCCCCCC
Q psy3910 316 LYNMEHVKALGLSWVRACVEQFEIVQPKSPYE 347 (348)
Q Consensus 316 ~~~~~~~~~~~~~W~~dci~~~~l~~~~~~~~ 347 (348)
..-..+++.|+.+||.||+..-+++|.+ +|+
T Consensus 55 ~a~~~g~~IV~~~Wl~~c~~~~~~~~e~-~y~ 85 (210)
T 2nte_A 55 LGILNGCWILKFEWVKACLRRKVCEQEE-KYE 85 (210)
T ss_dssp HHHHTTCEEEETHHHHHHHHHTSCCCGG-GTB
T ss_pred HHHhcCCEEecHHHHHHHHHcCCcCChh-hcc
Confidence 1222478899999999999999999765 564
No 161
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.45 E-value=8.7e-05 Score=61.77 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=61.1
Q ss_pred cceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCcccc
Q psy3910 238 NGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPRRL 316 (348)
Q Consensus 238 ~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ 316 (348)
.+..|.+++ +. ...+++++++|+..||+++.. + +++ ..|||+|.-.+. +..-..
T Consensus 8 ~~~~~~~Sg-~~---~~~~~~l~~~i~~LGg~~~~~-~---~~~-----------------~~~THlV~~~~~RT~K~l~ 62 (235)
T 3al2_A 8 KQYIFQLSS-LN---PQERIDYCHLIEKLGGLVIEK-Q---CFD-----------------PTCTHIVVGHPLRNEKYLA 62 (235)
T ss_dssp CCCEEEEES-CC---HHHHHHHHHHHHHTTCEECCS-S---SCC-----------------TTCCEEEESSCCCSHHHHH
T ss_pred CCEEEEEcC-CC---HHHHHHHHHHHHHcCCEEecc-C---CCC-----------------CCCcEEEECCCCCCHHHHH
Confidence 577888887 44 456788999999999998742 0 011 249999998765 332222
Q ss_pred cccccccccchHHHHHHHhhccccCCCCCCC
Q psy3910 317 YNMEHVKALGLSWVRACVEQFEIVQPKSPYE 347 (348)
Q Consensus 317 ~~~~~~~~~~~~W~~dci~~~~l~~~~~~~~ 347 (348)
.-..+.+.|+.+||.||+..-+++|.+ +||
T Consensus 63 aia~G~wIvs~~wl~~s~~~g~~l~E~-~ye 92 (235)
T 3al2_A 63 SVAAGKWVLHRSYLEACRTAGHFVQEE-DYE 92 (235)
T ss_dssp HHHTTCEEECTHHHHHHHHHTSCCCSG-GGB
T ss_pred HHHcCCcCccHHHHHHHHHcCCCCChh-cee
Confidence 233588999999999999999999865 564
No 162
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.42 E-value=0.00012 Score=59.94 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=54.7
Q ss_pred CCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCcc
Q psy3910 236 LFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPR 314 (348)
Q Consensus 236 lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~ 314 (348)
...++.++++| |. + ++++++|+..||+++.. +..|||+|.-... +..-
T Consensus 9 ~~~~~~v~~sG-~~-----~-~~~~~~i~~lGg~~~~~------------------------~~~~THlI~~~~~rt~K~ 57 (209)
T 2etx_A 9 ESTAPKVLFTG-VV-----D-ARGERAVLALGGSLAGS------------------------AAEASHLVTDRIRRTVKF 57 (209)
T ss_dssp ---CCEEEECS-SC-----C-HHHHHHHHHTTCEECSS------------------------TTTCSEEECSSCCCSHHH
T ss_pred cCCCcEEEEeC-CC-----c-HHHHHHHHHCCCEEeCC------------------------CCCceEEEECCCCCCHHH
Confidence 45799999988 33 2 35799999999998652 1237887765432 2221
Q ss_pred cccccccccccchHHHHHHHhhccccCCCCCCC
Q psy3910 315 RLYNMEHVKALGLSWVRACVEQFEIVQPKSPYE 347 (348)
Q Consensus 315 ~~~~~~~~~~~~~~W~~dci~~~~l~~~~~~~~ 347 (348)
...-..+++.|+.+||.||+..-+++|.+ +|+
T Consensus 58 l~a~~~g~~IV~~~Wl~~~~~~~~~l~e~-~y~ 89 (209)
T 2etx_A 58 LCALGRGIPILSLDWLHQSRKAGFFLPPD-EYV 89 (209)
T ss_dssp HHHHHHTCCEECTHHHHHHHHHTSCCCSG-GGB
T ss_pred HHHHhcCCccccHHHHHHHHHcCCCCChh-hcc
Confidence 22223478899999999999999999876 454
No 163
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.00013 Score=54.67 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred cCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCcccee
Q psy3910 131 SGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEI 210 (348)
Q Consensus 131 ~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei 210 (348)
..+..+...+ |+ .+...+... +||+++.... +.++..+...|.+||+.+|+.+|++.++++++..|.+
T Consensus 39 ~~l~~~i~~~--Gg---~v~~~~s~~-~ThLI~~~~~------~~K~~~A~~~gi~IV~~~Wl~d~~~~~~~l~e~~Y~l 106 (129)
T 2d8m_A 39 SELRDKALEL--GA---KYRPDWTRD-STHLICAFAN------TPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRYLM 106 (129)
T ss_dssp HHHHHHHHHT--TE---EEESSCCTT-CCEEEESSSS------CHHHHHHHHHTCEEEETHHHHHHHHTTSCCCGGGGBC
T ss_pred HHHHHHHHHc--CC---EEeCCcCCC-CeEEEecCCC------ChHHHHHHHCCCcEecHHHHHHHHHhCCcCChHhccc
Confidence 3333444444 55 555666666 9999988432 2356666668999999999999999999999999998
Q ss_pred ccc
Q psy3910 211 LGT 213 (348)
Q Consensus 211 ~~~ 213 (348)
...
T Consensus 107 ~~~ 109 (129)
T 2d8m_A 107 AGP 109 (129)
T ss_dssp SSS
T ss_pred CCC
Confidence 776
No 164
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.30 E-value=5.1e-05 Score=55.03 Aligned_cols=81 Identities=7% Similarity=0.053 Sum_probs=57.3
Q ss_pred hcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcC
Q psy3910 121 YADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIG 200 (348)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~ 200 (348)
..+++...++..+..+.... |+ .....+.+. +||+++....... +-.+...+..||+.+|+.+|++.+
T Consensus 19 ~~sg~~~~~r~~l~~~i~~~--GG---~~~~~~~~~-~THLV~~~~~~~K------~~~a~~~~i~IV~~~Wl~dsi~~g 86 (109)
T 2cou_A 19 SFLGFSDEEKHSMEEMTEMQ--GG---SYLPVGDER-CTHLIVEENTVKD------LPFEPSKKLFVVKQEWFWGSIQMD 86 (109)
T ss_dssp EEESSCHHHHHHHHHHHHHH--TC---BCCCTTCTT-CSEEEECTTTCSS------CSSCCCTTSEEECHHHHHHHHHTT
T ss_pred EecCCCHHHHHHHHHHHHHc--CC---EEecccCCC-ccEEEEeCCccHH------HHHHHHCCCeEecHHHHHHHHHcC
Confidence 33455555566666666666 76 555555555 9999998543221 222344588999999999999999
Q ss_pred CCccCccceeccc
Q psy3910 201 KVLPVEEFEILGT 213 (348)
Q Consensus 201 ~~~~e~~~ei~~~ 213 (348)
..++|..|.+...
T Consensus 87 ~~ldE~~Y~~~~~ 99 (109)
T 2cou_A 87 ARAGETMYLYEKA 99 (109)
T ss_dssp SCCCGGGTBCCCC
T ss_pred CcCChhccCCCCC
Confidence 9999999988764
No 165
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00023 Score=51.10 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=47.7
Q ss_pred cCCCCccceeeccccccceeecCCCCCchHhhHHHHHHH--HhccceeecHHHHHHHHhcCCCccCccceec
Q psy3910 142 SGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRA--ILSGIKAVDYTWISRSLEIGKVLPVEEFEIL 211 (348)
Q Consensus 142 ~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~--i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~ 211 (348)
.|+ .+++.+.+. +||++++.+ ......++.+.. +..+..+|+.+|+.+|++.++++||+.|.+.
T Consensus 39 ~Ga---~v~~~~~~~-vTHVVvd~~--~s~~~~l~~l~~~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 39 HGG---QLCPAQGPG-VTHIVVDEG--MDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp TTC---CCCSTTCTT-CCEEEECSS--SCHHHHHHHTTCSSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCS
T ss_pred cCC---EEeeccCCC-ccEEEEcCC--CCHHHHHHHHhhcccCCCcEEecCchHHHHHhcCcccCccccccc
Confidence 366 777777665 999999843 234555555552 3345689999999999999999999999764
No 166
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.17 E-value=0.00019 Score=52.70 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=62.0
Q ss_pred CCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccCCC--
Q psy3910 235 GLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEEAL-- 312 (348)
Q Consensus 235 ~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 312 (348)
..|.|+.+|+.+. +.+.-.++.|.+|++..|++|.+.. . ...||+|+ ...+.
T Consensus 9 ~~F~~v~iyive~--kmG~sRr~fL~~la~~kGf~v~~~~------S-----------------~~VTHVV~-E~~s~~~ 62 (133)
T 2dun_A 9 TRFPGVAIYLVEP--RMGRSRRAFLTGLARSKGFRVLDAC------S-----------------SEATHVVM-EETSAEE 62 (133)
T ss_dssp CSEEEEEEEECHH--HHCSHHHHHHHHHHHHHTEEECSSC------C-----------------TTCCEEEE-SSCCHHH
T ss_pred cccCccEEEEecC--CcCHHHHHHHHHHHHhcCCEecccc------C-----------------CCceEEEe-cCCCHHH
Confidence 5799999999994 2335578889999999999997642 1 23788888 33321
Q ss_pred ccccc---------ccccccccchHHHHHHHhhccccCCCCCC
Q psy3910 313 PRRLY---------NMEHVKALGLSWVRACVEQFEIVQPKSPY 346 (348)
Q Consensus 313 ~~~~~---------~~~~~~~~~~~W~~dci~~~~l~~~~~~~ 346 (348)
-..|. ...+...+.+.||.||+..-+++|.+..|
T Consensus 63 ~~~~L~~~~~~l~~~~~~~~lLdisWltecm~~g~pV~~e~~~ 105 (133)
T 2dun_A 63 AVSWQERRMAAAPPGCTPPALLDISWLTESLGAGQPVPVECRH 105 (133)
T ss_dssp HHHHHHHHHHHSCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTT
T ss_pred HHHHHHHhhcccCcCCCCcEEeccHHHHHHHhcCCcCCcccce
Confidence 11122 22456778999999999999999986544
No 167
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=97.13 E-value=0.00025 Score=49.57 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=41.9
Q ss_pred cceeeccc-cccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceec
Q psy3910 148 IIVSTLLQ-SNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEIL 211 (348)
Q Consensus 148 ~iv~~l~~-~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~ 211 (348)
.+...+.. ..+||+++...... +. ....|..+|+.+|+.+|++.++++++++|.+.
T Consensus 36 ~~~~~~~~~~~~THlI~~~~~~~------K~--~~~~~~~iV~~~Wi~dci~~~~~l~e~~Y~l~ 92 (92)
T 4id3_A 36 KFLHYLSSKKTVTHIVASNLPLK------KR--IEFANYKVVSPDWIVDSVKEARLLPWQNYSLT 92 (92)
T ss_dssp EEESSCCCTTTCCEEECSCCCHH------HH--HHTTTSCEECTHHHHHHHHHTSCCCGGGGBCC
T ss_pred EEEEEecCCCceEEEEecCCCHH------HH--HHcCCCCEEcccHHHHHHHcCCcCChhhcccC
Confidence 66666662 34999998854321 11 12368899999999999999999999999763
No 168
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=97.09 E-value=5.5e-05 Score=54.80 Aligned_cols=81 Identities=7% Similarity=0.061 Sum_probs=56.9
Q ss_pred HhcCCCCcccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhc
Q psy3910 120 IYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEI 199 (348)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~ 199 (348)
+.-+++...++..+..+.... |+ .....+... +||+++...... ++-.+...+..||+.+|+.+|++.
T Consensus 27 Ic~sGf~~~er~~l~~~i~~~--GG---~~~~~l~~~-cTHLV~~~~~~~------K~~~A~~~~i~IVs~eWl~dsi~~ 94 (112)
T 3l46_A 27 LSFLGFSDEEKTNMEEMTEMQ--GG---KYLPLGDER-CTHLVVEENIVK------DLPFEPSKKLYVVKQEWFWGSIQM 94 (112)
T ss_dssp ECEESCCHHHHHHHHHHHHHT--TC---EECCTTCTT-CSEEEECTTTBS------SCSSCCCSSCEEEEHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHc--CC---EECcccCCC-ceEEEecCCchh------hHHHHHHCCeeEecHHHHHHHHHc
Confidence 334556655555555555444 55 555556566 999999965443 222344568899999999999999
Q ss_pred CCCccCccceecc
Q psy3910 200 GKVLPVEEFEILG 212 (348)
Q Consensus 200 ~~~~~e~~~ei~~ 212 (348)
+..+||..|.+..
T Consensus 95 g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 95 DARAGETMYLYEK 107 (112)
T ss_dssp TSCCCGGGSBCCC
T ss_pred CCccChhhceecc
Confidence 9999999998865
No 169
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00029 Score=49.85 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=40.1
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCcccee
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEI 210 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei 210 (348)
.+...+....+||+++........ .. +.+..+|+.+|+.+|++.++++++++|.+
T Consensus 41 ~~~~~~~~~~~THlI~~~~~~~k~------~~--~~~~~iV~p~Wl~dci~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 41 QYHVYYSRSKTTHIIATNLPNAKI------KE--LKGEKVIRPEWIVESIKAGRLLSYIPYQL 95 (97)
T ss_dssp EECSSCCSSSCCEEECSCCCTTHH------HH--TSSSCCBCTHHHHHHHHHTSCCCSGGGBS
T ss_pred EEeeecCCCCCEEEEecCCChHHH------HH--hcCCCEeChHHHHHHHHcCCccCchHcEe
Confidence 444444434599999885433211 11 23889999999999999999999999975
No 170
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.06 E-value=0.00011 Score=53.96 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=56.6
Q ss_pred cccccCCchHHHHHHcCCCCccceeeccccccceeecCCCCCchHhhHHHHHH----HHh---ccceeecHHHHHHHHhc
Q psy3910 127 KTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLR----AIL---SGIKAVDYTWISRSLEI 199 (348)
Q Consensus 127 ~~~~~~~~~~~~~la~~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~----~i~---~g~~iv~~~wi~~~~~~ 199 (348)
...++.+.+++..- |. .+.+.+.+. +||+++.. ..+.+.+..|. .+- .+-.+++..|+.+|++.
T Consensus 25 ~sRr~fL~~la~~k--Gf---~v~~~~S~~-VTHVV~E~---~s~~~~~~~L~~~~~~l~~~~~~~~lLdisWltecm~~ 95 (133)
T 2dun_A 25 RSRRAFLTGLARSK--GF---RVLDACSSE-ATHVVMEE---TSAEEAVSWQERRMAAAPPGCTPPALLDISWLTESLGA 95 (133)
T ss_dssp SHHHHHHHHHHHHH--TE---EECSSCCTT-CCEEEESS---CCHHHHHHHHHHHHHHSCTTCCCCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CC---EeccccCCC-ceEEEecC---CCHHHHHHHHHHhhcccCcCCCCcEEeccHHHHHHHhc
Confidence 33445555555555 77 888888888 99999963 44455555552 222 56789999999999999
Q ss_pred CCCccCccceeccc
Q psy3910 200 GKVLPVEEFEILGT 213 (348)
Q Consensus 200 ~~~~~e~~~ei~~~ 213 (348)
++.++++.+.+...
T Consensus 96 g~pV~~e~~~~l~~ 109 (133)
T 2dun_A 96 GQPVPVECRHRLEV 109 (133)
T ss_dssp TSCCCCCTTTSCCC
T ss_pred CCcCCcccceEeec
Confidence 99999988877665
No 171
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=96.94 E-value=0.00046 Score=55.85 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCcccccccccccccchHHHH
Q psy3910 253 PLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPRRLYNMEHVKALGLSWVR 331 (348)
Q Consensus 253 ~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~W~~ 331 (348)
...++.|.++|+..||..+.... + ..|||+|+-.+. +..-...-..+.+.|+.+||.
T Consensus 21 ~~~~~~l~~~i~~lgG~~~~~~~-----~-----------------~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~ 78 (199)
T 3u3z_A 21 SEKQNVVIQVVDKLKGFSIAPDV-----C-----------------ETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVL 78 (199)
T ss_dssp HHHHHHHHHHHHHHCSCEEESSC-----C-----------------TTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEecCC-----C-----------------CCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHH
Confidence 55777899999999886553211 1 238899995542 221112223468899999999
Q ss_pred HHHhhccccCCCCCCC
Q psy3910 332 ACVEQFEIVQPKSPYE 347 (348)
Q Consensus 332 dci~~~~l~~~~~~~~ 347 (348)
||+..-+++|.+ ||+
T Consensus 79 ~~~~~g~~l~e~-~y~ 93 (199)
T 3u3z_A 79 WSLELGHWISEE-PFE 93 (199)
T ss_dssp HHHHHTSCCCSG-GGB
T ss_pred HHhhCCCCCChh-hcc
Confidence 999999999876 553
No 172
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=96.86 E-value=0.00071 Score=50.81 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=42.4
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHH-hccceeecHHHHHHHHhcCCCccCccceecc
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAI-LSGIKAVDYTWISRSLEIGKVLPVEEFEILG 212 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i-~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~ 212 (348)
.++..+.+. +||++++.. .. .++..... ..+..+|+.+|+.+|++.+++++|+.|.+..
T Consensus 69 ~v~~~l~~~-vTHvI~~~~-~~----~~~~~~~~~~~~~~iV~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 69 VRFNQLNED-VTHVIVGDY-DD----ELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp EEESSCCSS-CCEEEESSC-CS----HHHHHHHHSCCCCCEEEHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred EEeCcCCCC-CeEEEECCc-hH----HHHHHHHhhCCCCeEechHHHHHHHHcCCcCCHhhccCCC
Confidence 666666655 999999842 11 22222222 2467999999999999999999999996643
No 173
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=96.71 E-value=0.0011 Score=47.21 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=45.2
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceeccc
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGT 213 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~ 213 (348)
.+...+.++ +||++++...+.... .......+.-+|..+||.+|.+.++++++++|++.-.
T Consensus 37 ~v~~~~~~~-vTHvIt~~~~d~~~~----~a~~~~p~~~~V~P~WI~~Ci~~~klvp~~~y~~~~~ 97 (104)
T 3pc6_A 37 ELEDYMNER-VQFVITAQEWDPNFE----EALMENPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQ 97 (104)
T ss_dssp EECSSCCTT-CCEEEESSCCCHHHH----HHHTTCTTCEEECHHHHHHHHHHTSCCCGGGGBCCCC
T ss_pred EEEcccCCC-ceEEEeCCCCChhHH----HHhhhCCCCeEEccHHHHHHHhcCccCCcccceecch
Confidence 565566555 999999865433322 2222344788999999999999999999999998654
No 174
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=96.39 E-value=0.001 Score=54.62 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=53.7
Q ss_pred CcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCccc
Q psy3910 237 FNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPRR 315 (348)
Q Consensus 237 f~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 315 (348)
-.+..++++| |.+. +.+++|+..||+|+.. ...|||+|.-... +..-.
T Consensus 6 ~~~~~v~fSG-~~~~------~~~~~i~~lGg~v~~~------------------------~~~~THlV~~~~~RT~K~l 54 (220)
T 3l41_A 6 SKRVYITFTG-YDKK------PSIDNLKKLDMSITSN------------------------PSKCTHLIAPRILRTSKFL 54 (220)
T ss_dssp -CCEEEEECS-CSSC------CCCGGGGGGTEEECSC------------------------TTTCSEEECSSCCCBHHHH
T ss_pred cceEEEEEec-cCCC------CCcchHhhcceeeccC------------------------chhhhhhhhhhHhhhccee
Confidence 3578888888 4411 2389999999998753 1238887765432 22222
Q ss_pred ccccccccccchHHHHHHHhhccccCCCCC
Q psy3910 316 LYNMEHVKALGLSWVRACVEQFEIVQPKSP 345 (348)
Q Consensus 316 ~~~~~~~~~~~~~W~~dci~~~~l~~~~~~ 345 (348)
..-..+.+.|+.+||.+|+..-+++|.++|
T Consensus 55 ~Aia~g~~IVs~~Wl~~~~~~~~~l~e~~y 84 (220)
T 3l41_A 55 CSIPYGPCVVTMDWINSCLKTHEIVDEEPY 84 (220)
T ss_dssp HHGGGCCEEECHHHHHHHHHHTSCCCSGGG
T ss_pred ecCCCCCeEEEhHHHHhhhhhhhccccCcc
Confidence 223357899999999999999999988743
No 175
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=96.10 E-value=0.0055 Score=54.37 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=46.0
Q ss_pred CCCCccceeeccccccceeecCCCCCchHhhHHHHHHHHhc-cceeecHHHHHHHHhcCCCccCcccee
Q psy3910 143 GADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILS-GIKAVDYTWISRSLEIGKVLPVEEFEI 210 (348)
Q Consensus 143 ~~~~~~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~-g~~iv~~~wi~~~~~~~~~~~e~~~ei 210 (348)
|+ .+...+... +||+++...+ +.|+..+... |..||+.+|+.+|++.++.++|+.|.+
T Consensus 313 Ga---~v~~~vs~~-vTHLVa~~~~------t~K~~~A~~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 313 GA---EVVLDFSVP-PTHLIAAKIR------TEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp TC---EEESSSSSC-CSEEEECSCC------CHHHHHHHHSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred CC---EEeCcCCCC-ceEEEEcCCC------chHHHHHHhcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence 66 666677666 9999987443 2345555555 789999999999999999999999976
No 176
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=95.85 E-value=0.0062 Score=54.92 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=45.0
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhc-cceeecHHHHHHHHhcCCCccCcccee
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILS-GIKAVDYTWISRSLEIGKVLPVEEFEI 210 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~-g~~iv~~~wi~~~~~~~~~~~e~~~ei 210 (348)
.+...+... +||+++...+ +.|+..+... |.+||+.+|+.+|+..++.++|..|.+
T Consensus 385 ~~~~~vs~~-vTHLVa~~~~------t~K~~~A~~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 385 EVVLDFSVP-PTHLIAAKIR------TEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp EECSSSSSC-CSEEEECSCC------CHHHHHHHHHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred EEeCCCCCC-ceEEEeCCCC------CHHHHHHHhcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence 666666666 9999988442 3456666666 589999999999999999999999976
No 177
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.81 E-value=0.0049 Score=58.60 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCcc
Q psy3910 236 LFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPR 314 (348)
Q Consensus 236 lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~ 314 (348)
.|.|..|+|+|.+. . ++++++++|+..||+|.+...+ -|.|+|..+. ..+.
T Consensus 587 ~l~G~~~v~TG~l~---~-~R~e~~~~i~~~Ggkv~~sVSk------------------------kTd~lV~G~~~gsKl 638 (667)
T 1dgs_A 587 LLSGLTFVLTGELS---R-PREEVKALLGRLGAKVTDSVSR------------------------KTSYLVVGENPGSKL 638 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCEEEEeCCCC---C-CHHHHHHHHHHcCCEEcCcccC------------------------CeeEEEECCCCChHH
Confidence 48899999999887 6 9999999999999999764221 1223343333 3334
Q ss_pred cccccccccccchHHHHHHHhhccccCC
Q psy3910 315 RLYNMEHVKALGLSWVRACVEQFEIVQP 342 (348)
Q Consensus 315 ~~~~~~~~~~~~~~W~~dci~~~~l~~~ 342 (348)
.+...-++..++.+|+++.|...++-||
T Consensus 639 ~KA~~lgI~Ii~E~~f~~~l~~~~~p~~ 666 (667)
T 1dgs_A 639 EKARALGVAVLTEEEFWRFLKEKGAPVP 666 (667)
T ss_dssp ----------------------------
T ss_pred HHHHHCCCeEEeHHHHHHHHhcCCCCCC
Confidence 4556668999999999999999887554
No 178
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=93.76 E-value=0.089 Score=35.85 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=35.4
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccC
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPV 205 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e 205 (348)
+++..+....+||++.+.+ ...+...|+.+||-+|++.+++++.
T Consensus 44 ~v~~~~~~~~vTHvI~~~~--------------~~~~~~~V~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 44 DLVQEFDMTSATHVLGSRD--------------KNPAAQQVSPEWIWACIRKRRLVAP 87 (88)
T ss_dssp EECCGGGGGGCSEEESCCT--------------TCTTSEEECHHHHHHHHHHTSCCSC
T ss_pred EEecccCCCcCeEEecCCC--------------cCCCCcEEchHHHHHHHhCCcccCC
Confidence 6767666555999997643 2668899999999999999999864
No 179
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.09 E-value=0.068 Score=37.59 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=33.6
Q ss_pred ccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccc
Q psy3910 155 QSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEF 208 (348)
Q Consensus 155 ~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ 208 (348)
+..+||.+++..... . ...+.-+|.++||.+|++.+++++.++|
T Consensus 56 ~~~iTh~I~drp~~~---~-------~~~~r~~VqPqWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 56 DSRITHQIVDRPGQQ---T-------SVIGRCYVQPQWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp CTTCCEEECSCTTTS---C-------CBTTBEEECTHHHHHHHHHTSCCCTTTC
T ss_pred CCceEEEEecccchh---h-------hcCCCeEEcchHHHHHHhcCCcCChhhc
Confidence 345999998843211 0 2356789999999999999999999887
No 180
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=92.00 E-value=0.028 Score=53.49 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeeccCCCCCcccccccceeeccCCCCccccCCceEEEeccC-CCcc
Q psy3910 236 LFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIVYSEE-ALPR 314 (348)
Q Consensus 236 lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~ 314 (348)
.|.|..|+|+|.+. ..++++++++|+..||+|.+...+ -|.|+|..+. ..+.
T Consensus 597 ~l~G~~~v~TG~l~---~~~R~e~~~~i~~~Ggkv~~sVSk------------------------kTd~lV~G~~~gsKl 649 (671)
T 2owo_A 597 PFAGKTVVLTGSLS---QMSRDDAKARLVELGAKVAGSVSK------------------------KTDLVIAGEAAGSKL 649 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcEEEEcCCCC---CCCHHHHHHHHHHcCCEEeCcccC------------------------ceeEEEECCCCChHH
Confidence 48899999999887 779999999999999999764222 1222333333 3334
Q ss_pred cccccccccccchHHHHHHHh
Q psy3910 315 RLYNMEHVKALGLSWVRACVE 335 (348)
Q Consensus 315 ~~~~~~~~~~~~~~W~~dci~ 335 (348)
.+.+.-++..++.+|+++.|.
T Consensus 650 ~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 650 AKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ---------------------
T ss_pred HHHHHCCCcEEcHHHHHHHhc
Confidence 455666899999999998874
No 181
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=91.13 E-value=0.44 Score=40.60 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=66.6
Q ss_pred cceeeccccccceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCc-c-------CccceecccccCCCC
Q psy3910 148 IIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVL-P-------VEEFEILGTVDYPLA 219 (348)
Q Consensus 148 ~iv~~l~~~g~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~-~-------e~~~ei~~~~~~~~~ 219 (348)
.+++...+. .||+++.. ..+.+.|.|.+.|++.|+.||..+|+.+.....+-. . ..+|--.-. ....|
T Consensus 139 k~v~~~~de-tTHlVm~k--rnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e~~~~~~~~~wPdp~dflP~i~-~g~Ep 214 (325)
T 3huf_A 139 PTGLRDSDA-TTHFVMNR--QAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVKESVIEDASLMPDALECFKNII-KNNDQ 214 (325)
T ss_dssp CEESSCCTT-CCEEECCC--CCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCTTCCCCTTSSHHHHHHHHHHHH-TTCTT
T ss_pred EEEEccCCC-EEEEEEec--cccccchHHHHHHHHCCCcEecHHHHHHHHHhhhhhhhcccCCCChHHcCCCCC-CCCCC
Confidence 444444555 99999862 344567899999999999999999999987532111 1 111111100 00011
Q ss_pred chhhhhHHhHhhhCCCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeec
Q psy3910 220 KPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLN 272 (348)
Q Consensus 220 ~~~~~~r~~~~~~~p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~ 272 (348)
+.+. ....-+-|.|+.+++.. .-.++.-|+.+.|=+|..
T Consensus 215 --~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 253 (325)
T 3huf_A 215 --FPSS----PEDCINSLEGFSCAMLN--------TSSESHHLLELLGLRIST 253 (325)
T ss_dssp --CCSC----HHHHTTTTTTCEEEEET--------CCHHHHHHHHHTTCEEEE
T ss_pred --CCCC----HHHhhcccCceEEEEEc--------CchhhhHHHHHhcceeee
Confidence 1111 11223568899988876 456799999999999854
No 182
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=70.85 E-value=6.3 Score=28.11 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=28.2
Q ss_pred CCCCcceEEEecCCCCCCCCCChHHHHHHHHHcCceeec
Q psy3910 234 PGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLN 272 (348)
Q Consensus 234 p~lf~g~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~ 272 (348)
..||.|-.|.|.. ....+.|..+|..+||...-
T Consensus 11 ~~LF~GKtFvFLn------~KQ~kkl~~aV~~~GG~~~l 43 (118)
T 2k2w_A 11 KSIFKDKVFLFLN------AKQYKKLSPAVLFGGGKTDL 43 (118)
T ss_dssp SCSSTTCEEEESC------SSTHHHHHHHHHHTTCEEEC
T ss_pred HhhccCCEEEEeC------HHHHHHHHHHHHhcCceEEe
Confidence 3699999999988 56778899999999999753
No 183
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=55.88 E-value=14 Score=28.08 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=40.0
Q ss_pred cceeecCCCCCchHhhHHHHHHHHhccceeecHHHHHHHHhcCCCccCccceeccc
Q psy3910 158 VNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGT 213 (348)
Q Consensus 158 ~~~~iv~~~~~~~~~~tl~~l~~i~~g~~iv~~~wi~~~~~~~~~~~e~~~ei~~~ 213 (348)
.+|++++.-++. ...-+.+.+--....||..+|+.+|....+++.-..|++..+
T Consensus 203 tthfvcndldne--esneelirakhnnipivrpewvracevekrivgvrgfyldad 256 (290)
T 4gns_A 203 TTHFVCNDLDNE--ESNEELIRAKHNNIPIVRPEWVRACEVEKRIVGVRGFYLDAD 256 (290)
T ss_dssp CCEEECSCCTTC--TTCHHHHHHHHTTCCEECTHHHHHHHHTTSCCCSGGGBTTSC
T ss_pred cceeeecCCCcc--cchHHHHhhhccCCCccCHHHHHHHhhhheeeeeeeEEEccc
Confidence 578876633222 233455667777889999999999999999988888887665
No 184
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=44.61 E-value=17 Score=20.00 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHcCCHHHHHHHH
Q psy3910 14 LHDAVSIGNESVVRLLL 30 (348)
Q Consensus 14 Lh~A~~~g~~~~v~~Ll 30 (348)
+..||..|+.+.++.|=
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 45677778888777763
No 185
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=42.12 E-value=66 Score=28.46 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=38.1
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCC------------C--CCCChHHHHHHHcCCHHHHHHHHh
Q psy3910 17 AVSIGNESVVRLLLEAGALVNVP------------G--LDNDTPLHLAARDVRPALAKLLIQ 64 (348)
Q Consensus 17 A~~~g~~~~v~~Ll~~ga~~n~~------------~--~~g~TpLh~A~~~g~~~~v~~Ll~ 64 (348)
.+..|+...|+.-+..|.|++.+ + .-|.|-+|+|.+..+.+++.+|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34579999999999999887532 1 248888888888888888888886
No 186
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=35.94 E-value=16 Score=20.59 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=11.1
Q ss_pred HHHhhccccCCCCCCCC
Q psy3910 332 ACVEQFEIVQPKSPYEQ 348 (348)
Q Consensus 332 dci~~~~l~~~~~~~~~ 348 (348)
.|.+..+-||.++||.|
T Consensus 20 ScaSSLSAL~l~E~yiq 36 (47)
T 1v18_B 20 SCSSSLSALSLDEPFIQ 36 (47)
T ss_dssp C----CCCCCCSSCCCC
T ss_pred cchhccccccccchhhh
Confidence 37778888999999987
No 187
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=26.47 E-value=1.8e+02 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=39.6
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCC--------------CCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy3910 50 AARDVRPALAKLLIQYGADVDKR--------------NIQGHKPLEYLDVISRDDIKTDILTAL 99 (348)
Q Consensus 50 A~~~g~~~~v~~Ll~~gad~~~~--------------d~~g~tpL~~A~~~~~~~~~~~Ll~~~ 99 (348)
.+..|+...|+.-+.+|.|++.+ -..|.|-+|+|.+..+.+++..|+..+
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhcc
Confidence 34568888888888888776432 136999999999999999999998644
No 188
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=25.40 E-value=41 Score=16.34 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=10.0
Q ss_pred hHHHHHHHhhcc
Q psy3910 327 LSWVRACVEQFE 338 (348)
Q Consensus 327 ~~W~~dci~~~~ 338 (348)
++|++|.+.+|.
T Consensus 13 vKlI~~TV~KFt 24 (26)
T 1dtc_A 13 VKWIIDTVNKFT 24 (26)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHh
Confidence 579999998875
Done!