RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3910
(348 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 92.1 bits (229), Expect = 7e-23
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N KDN G TPLH A G+ +V+LLLE GA VN D +TPLHLAAR+ + KL
Sbjct: 32 DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKL 91
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+++GADV+ R+ G PL
Sbjct: 92 LLKHGADVNARDKDGRTPLHL 112
Score = 87.1 bits (216), Expect = 5e-21
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D G TPLH A S G+ VV+LLLE GA VN D TPLHLAA++ + KLL+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ R+ G+ PL
Sbjct: 61 EKGADVNARDKDGNTPL 77
Score = 74.3 bits (183), Expect = 2e-16
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N +D G TPLH A GN VV+LLL+ GA VN D TPLHLAA++ + KL
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124
Query: 62 LI 63
L+
Sbjct: 125 LL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 70.7 bits (174), Expect = 1e-15
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N+ D T LH A GN +V+LLLE GA VN D +T LHLAAR+ + KL
Sbjct: 22 DVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKL 79
Query: 62 LIQYGADVDKRN 73
L+++GAD++ ++
Sbjct: 80 LLEHGADINLKD 91
Score = 66.9 bits (164), Expect = 4e-14
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
LH A GN +V+LLLE GA VN+ D DT LHLAAR+ + KLL+++GADV+ ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 74 IQGHKPLEY 82
G+ L
Sbjct: 59 KDGNTALHL 67
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 62.8 bits (153), Expect = 7e-11
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N+KD G+TPLH AV N V+ LL+ GA N+ DTPLH+A + + KLL+
Sbjct: 186 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLL 245
Query: 64 QYGADVD--KRNIQGHKPLEYLDVISRDDIKTDILTALSL 101
G + + K + + +K I+ L
Sbjct: 246 NNGPSIKTIIETLLYFKDKDLNTITKIKMLKKSIMYMFLL 285
Score = 51.2 bits (123), Expect = 4e-07
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 18/100 (18%)
Query: 1 MNPNVKDNAGWTPLHDAVS------------------IGNESVVRLLLEAGALVNVPGLD 42
N N+K++ G LH + I ++ V LL G +N+ +
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVY 191
Query: 43 NDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82
TPLH A + P K L+ GA+ + N G PL
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI 231
Score = 47.4 bits (113), Expect = 5e-06
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 2 NPNVKDNAGWTPLHDAVS--IGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPAL- 58
N N DN G TPL A+S + S+V LL+ GA VN+ D + LHL + L
Sbjct: 98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK 157
Query: 59 -AKLLIQYGADVDKRN 73
KLLI G D++ +N
Sbjct: 158 ILKLLIDKGVDINAKN 173
Score = 46.6 bits (111), Expect = 1e-05
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAA------RDVRPALAKLLIQY 65
PL+ A N VV++LL+ GA +N +N TPLH + DV+ + KLL++Y
Sbjct: 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE-IVKLLLEY 95
Query: 66 GADVDKRNIQGHKPLEYL 83
GA+V+ + G PL Y
Sbjct: 96 GANVNAPDNNGITPLLYA 113
Score = 32.3 bits (74), Expect = 0.33
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNV 38
NPN+ + G TPLH A+ N+ + +LLL G +
Sbjct: 217 NPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 61.4 bits (149), Expect = 2e-10
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 4 NVKD-NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N+KD + G T LH A ++ + LLL GA VN+P N++PLH A + + +L
Sbjct: 161 NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL 220
Query: 63 IQYGADVDKRNIQGHKPLEY 82
++ GA D R+ G+ PL
Sbjct: 221 LENGASTDARDKCGNTPLHI 240
Score = 57.2 bits (138), Expect = 5e-09
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 2 NPNVKDNAGWTPLHDAVS-IGNESVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALA 59
+ + +D G TPLH +V + +++LLLE G VN + T LH + +
Sbjct: 226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKL 283
Query: 60 KLLIQYGADVDKRNIQGHKPL 80
KLL++YGAD++ N PL
Sbjct: 284 KLLLEYGADINSLNSYKLTPL 304
Score = 53.0 bits (127), Expect = 1e-07
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRP-ALAK 60
N N+ D +PLH AV N+ +V +LLE GA + +TPLH++ + + K
Sbjct: 193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILK 252
Query: 61 LLIQYGADVD-KRNIQGHKPL 80
LL+++G DV+ K I G L
Sbjct: 253 LLLEHGVDVNAKSYILGLTAL 273
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 25 VVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ +LLL GA +N+ T LH A + L +LL+ YGA+V+ + + PL
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205
Score = 37.2 bits (86), Expect = 0.010
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
PLH AV N VV+ LL G VN P + TPLH+
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII 77
Score = 36.4 bits (84), Expect = 0.020
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
G T LH SI +E ++LLLE GA +N TPL A +
Sbjct: 269 GLTALH--SSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 60.8 bits (148), Expect = 3e-10
Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 4 NVKDNAGWTPLHDAVSIGNE---SVVRLLLEAGALVNVPGLDNDTPLHLAAR-DVRPALA 59
N + G TPLH + +E +VRLLLEAGA VN P TPLHL +
Sbjct: 41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVI 100
Query: 60 KLLIQYGADVDKRNIQGHKPLE-YLDVISRDDIKTDILTAL 99
KLLI+ GADV+ ++ G PL YL S +I ++ L
Sbjct: 101 KLLIKAGADVNAKDKVGRTPLHVYL---SGFNINPKVIRLL 138
Score = 50.4 bits (121), Expect = 7e-07
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 4 NVKDNAGWTPLH---DAVSIGNESVVRLLLEAGALVNVPGLDNDTPLH--LAARDVRPAL 58
N KD G TPLH +I N V+RLLL GA VN L TPL L +R+ L
Sbjct: 111 NAKDKVGRTPLHVYLSGFNI-NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVEL 169
Query: 59 AKLLIQYGADVDKRNIQGHKPLEYLDVISRDD 90
+LLI GADV + + L + +
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPR 201
Score = 45.0 bits (107), Expect = 4e-05
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGN--ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALA 59
+P D G TPLH + + S+V LL AG +N TPLH AA P
Sbjct: 214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRAC 273
Query: 60 KLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPRLSAAPPPSL 112
+ LI GAD++ + G+ PL ++ ++ + A L+ P
Sbjct: 274 RRLIALGADINAVSSDGNTPL--SLMVRNNNG--RAVRAA----LAKNPSAET 318
Score = 44.2 bits (105), Expect = 7e-05
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 25 VVRLLLEAGALVNVPGLDNDTPLHLAAR---DVRPALAKLLIQYGADVDKRNIQGHKPLE 81
VR LL AGA VN G TPLHL + + +LL++ GADV+ G PL
Sbjct: 29 EVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLH 88
Query: 82 YL 83
Sbjct: 89 LY 90
Score = 43.5 bits (103), Expect = 1e-04
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESV--VRLLLEAGALVNVPGLDNDTPLHLAARDVRP--A 57
+ N D G TPL + N +V +RLL++AGA V + LH + +P
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRAR 203
Query: 58 LAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88
+ + LI+ G D ++ G+ PL + S
Sbjct: 204 IVRELIRAGCDPAATDMLGNTPLHSMATGSS 234
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 6 KDNAGWTPLHD-AVSI-GNESVVRLLLEAGALVNVPGLDNDTPLHLAA---RDVRPALAK 60
D+ + LH S +VR L+ AG + +TPLH A R +
Sbjct: 183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP 242
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LLI G ++ RN G PL Y
Sbjct: 243 LLIA-GISINARNRYGQTPLHY 263
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 58.7 bits (141), Expect = 6e-10
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNES-----VVRLLLEAGA---LVNVPGLDNDTPLHLAARD 53
+ N KD G TPLH A GN V +LLLEAGA + N+ D +TPLH AA +
Sbjct: 98 DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157
Query: 54 VRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDI 91
+ +LL++ GAD + RN G L+ R ++
Sbjct: 158 GDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIEL 195
Score = 52.1 bits (124), Expect = 9e-08
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRP-----AL 58
+D G PLH A S G++ +V+LLL +GA VN D DTPLHLAA + P +
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 59 AKLLIQYGADVD---KRNIQGHKPLEYLDVISRDDI 91
AKLL++ GAD+D R+ G+ PL + + DI
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162
Score = 47.9 bits (113), Expect = 2e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N++D G TPLH A G+ +V LLLEAGA N T L AA++ R L KL
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198
Query: 62 LIQYGADVDKRN 73
L+ G +
Sbjct: 199 LLDKGLHLSLLK 210
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 53.8 bits (129), Expect = 5e-08
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVN-VPGLDNDTPLHLAARDVRPALAKL 61
P+VK + LHDAV G+ V LL+ G + V D TPLHLA + + KL
Sbjct: 61 PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKL 120
Query: 62 LIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDIL 96
LI GAD D N PL +L V+ D ++L
Sbjct: 121 LIARGADPDIPNTDKFSPL-HLAVMMGDIKGIELL 154
Score = 46.9 bits (111), Expect = 8e-06
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G TPLH A + +++LL+ GA ++P D +PLHLA +LLI + A +
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161
Query: 70 DKRNIQGHKPLEY 82
D + G PL
Sbjct: 162 DIEDCCGCTPLII 174
Score = 44.6 bits (105), Expect = 5e-05
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLL 62
+++D G TPL A++ G+ ++ ++LL++GA ++ G + L A + + + +L
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221
Query: 63 IQYGAD 68
I+ GAD
Sbjct: 222 IKRGAD 227
Score = 34.6 bits (79), Expect = 0.077
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P++ + ++PLH AV +G+ + LL++ A +++ TPL +A A+ K+
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM 186
Query: 62 LIQYGADVD 70
L+ GA++D
Sbjct: 187 LLDSGANID 195
Score = 31.1 bits (70), Expect = 0.78
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
L DA+ G + R LL+ G N D +P+ LA + KLL+++GA D +
Sbjct: 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65
Query: 74 IQGHKPLEYLDVISRDDIK 92
L D + D+K
Sbjct: 66 PDIESELH--DAVEEGDVK 82
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 48.4 bits (116), Expect = 6e-08
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
G T LH A G +V+ LLE G +N D +T LH+AA + + KLL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 43 NDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
T LH AA R L K L++ G D+++ + G+ L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLL 30
++ N D G T LH A GN V++LLL
Sbjct: 25 VDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 51.1 bits (122), Expect = 5e-07
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN +D G TPLH A + G+ VVR+LLE GA + D TPL LA + + +L
Sbjct: 107 DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQL 166
Query: 62 LIQY-------GADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPN 114
L ++ GA+ + G P IS P SA P P + +
Sbjct: 167 LSRHSQCHFELGANAKPDSFTGKPPSLEDSPIS-----------SHHPDFSAVPQPMMGS 215
Query: 115 CIDIVI 120
I I++
Sbjct: 216 LIVIMV 221
Score = 44.5 bits (105), Expect = 6e-05
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 26 VRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81
R+LL GA N D TPLH+A + + ++L+++GAD + G PLE
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLE 153
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 45.2 bits (108), Expect = 6e-07
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNV 38
G TPLH A G+ VV+LLLEAGA VN
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 42.5 bits (101), Expect = 4e-06
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRN 73
D +TPLHLAAR+ + KLL++ GADV+ R+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 50.3 bits (120), Expect = 7e-07
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N++D+ G P+H A+ +++LLLE GA NV + ++PLH AA A KLLI
Sbjct: 151 NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTAL--------SLPRLSAAPPPSLPNC 115
+G + + G PL + +R I+ I A S P A PP +
Sbjct: 211 DHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDI 270
Query: 116 IDIVIY 121
IDI++Y
Sbjct: 271 IDILLY 276
Score = 48.0 bits (114), Expect = 4e-06
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N+KD T LH A+ G+ +++L E GA VN+ + P+H+A + + KLL+
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL 177
Query: 64 QYGADVDKRNIQGHKPLEY 82
+ GA + ++ G PL
Sbjct: 178 EKGAYANVKDNNGESPLHN 196
Score = 46.1 bits (109), Expect = 1e-05
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK- 60
+ K G+TPLH+A+ I N S + LL+ A +N +D TPLH A + P
Sbjct: 215 HIMNKCKNGFTPLHNAI-IHNRSAIELLIN-NASINDQDIDGSTPLHHA---INPPCDID 269
Query: 61 ---LLIQYGADVDKRNIQGHKPLEY-LDVISRDDIKTDIL 96
+L+ + AD+ ++ +G P++ I++D + DI+
Sbjct: 270 IIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDII 309
Score = 36.5 bits (84), Expect = 0.019
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 22 NESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ +++ +L+ G VN+ + T LH A + K+L +YGADV+ + G P+
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161
Score = 34.9 bits (80), Expect = 0.048
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 12 TPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
TPL DA+ G+ +V L ++ GA +N PL A + + KLLI G D
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD 93
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 45.0 bits (107), Expect = 9e-07
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
++ N D G TPLH A G +V+ LL+ G +N+ D T L LA
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 43.9 bits (104), Expect = 2e-06
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 29 LLEAG-ALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82
LLE G +N + +TPLHLAA+ L + L++ G D++ R+ G L+
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 45.4 bits (107), Expect = 3e-05
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N KD TP+H A GN +V LLL GA VN+ LD+ + L A K +I
Sbjct: 172 NAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAII 231
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRDDIKTDIL---TALSLPRLSAAPPPSLPNCIDIVI 120
++++K + L L I +D++T +L S+ N ID
Sbjct: 232 DNRSNINKND------LSLLKAIRNEDLETSLLLYDAGFSV------------NSIDDCK 273
Query: 121 YADQLDKTQTSGLAQFV-KTLSSGADV 146
+Q L++ V K L GADV
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADV 300
Score = 42.4 bits (99), Expect = 3e-04
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 12 TPLHDAVSIGNESV-VRLLLEAGALVNVPGLDNDTPLHLAAR-DVRPALAKLLIQYGADV 69
T LH A+ N + V+ L++ GA VN D TPLH A + + + + ++L+ GADV
Sbjct: 410 TALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV 469
Query: 70 DKRNIQGHKPL 80
+ NIQ PL
Sbjct: 470 NAINIQNQYPL 480
Score = 40.8 bits (95), Expect = 0.001
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 NVKDNAGWTPLHDAVSIG-NESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D TPLH A ++ N+ +V LLE GA VN + TP+H AA + L
Sbjct: 335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTL 394
Query: 63 IQYGADVD 70
+ YGAD++
Sbjct: 395 LDYGADIE 402
Score = 38.9 bits (90), Expect = 0.003
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALA-K 60
N N +D TP+H A N ++ LL+ GA + T LH A P ++ K
Sbjct: 367 NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK 426
Query: 61 LLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTAL 99
LI GA+V+ +N PL Y + + K D++ L
Sbjct: 427 TLIDRGANVNSKNKDLSTPLHY---ACKKNCKLDVIEML 462
Score = 38.9 bits (90), Expect = 0.004
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNES-VVRLLLEAGALVNVPGLDNDTPLHLAARD-VRPALAKL 61
N D+ TPLH A + S +V LLE GA VN + +TPL+L A++ +
Sbjct: 267 NSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRT 326
Query: 62 LIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSL 101
LI GADV+ + PL + R+ K ++T L L
Sbjct: 327 LIMLGADVNAADRLYITPLHQASTLDRN--KDIVITLLEL 364
Score = 32.0 bits (72), Expect = 0.59
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNE-SVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
N N K+ TPLH A + V+ +LL+ GA VN + N PL +A +
Sbjct: 434 NVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALE--YHGIVN 491
Query: 61 LLIQYGADV 69
+L+ YGA++
Sbjct: 492 ILLHYGAEL 500
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 39.1 bits (92), Expect = 7e-05
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNV 38
G TPLH A GN VV+LLL+ GA +N
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 38.0 bits (89), Expect = 2e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDK 71
D TPLHLAA + + KLL+ GAD++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNV 38
G TPLH A GN +V+LLLE GA +N
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 36.8 bits (86), Expect = 5e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVD 70
D +TPLHLAAR+ L KLL+++GAD++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 42.3 bits (99), Expect = 2e-04
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK- 60
+PN D+ G PLH A I N +V +LL GA N + TPL+ + + +
Sbjct: 64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERI 123
Query: 61 -LLIQYGADVDKR-NIQGHKPL 80
LL+QYGA ++ + +G PL
Sbjct: 124 NLLVQYGAKINNSVDEEGCGPL 145
Score = 31.6 bits (71), Expect = 0.64
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 22 NESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81
+E V LL G N D + PLH+A++ + +L+ +GAD + + Q PL
Sbjct: 51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY 110
Query: 82 YL 83
YL
Sbjct: 111 YL 112
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 37.9 bits (88), Expect = 0.004
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 12 TPLHDAVS--IGNESVVRLLLEAGALVN--VPGLDNDTPLHLAA---RDVRPALAKLLIQ 64
TP+ + N +++ L+E GA VN +N + LH ++V P + K+LI
Sbjct: 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRD-NNLSALHHYLSFNKNVEPEILKILID 111
Query: 65 YGADVDKRNIQGHKPLE-YLDVISRDDIKTDILTAL 99
G+ + + + G L Y+ + ++ +++ L
Sbjct: 112 SGSSITEEDEDGKNLLHMYMCNFN---VRINVIKLL 144
Score = 32.5 bits (74), Expect = 0.21
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 1 MNPNVKDNAGWTPLHDAVSIG---NESVVRLLLEAGALVNVPGLDNDTPLH--LAARDVR 55
+N +DN + LH +S ++++L+++G+ + D LH + +VR
Sbjct: 79 VNFKTRDN-NLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVR 137
Query: 56 PALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIK-TDILTALSL 101
+ KLLI G ++ + L Y ++ D K D LT+L +
Sbjct: 138 INVIKLLIDSGVSFLNKDFDNNNIL-YSYILFHSDKKIFDFLTSLGI 183
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 37.7 bits (87), Expect = 0.005
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
D G + L+ A++ N +V LL AGAL N+ L+N+ PLH AA + K+L+ G
Sbjct: 27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSG 84
Query: 67 ADVDKRNIQGHKPLEY 82
D + + +G+ L Y
Sbjct: 85 MDDSQFDDKGNTALYY 100
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 37.9 bits (88), Expect = 0.007
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 25 VVRLLLEAGALVNVPGLDND--TPLHLAA---RDVRPAL--AKLLIQYGADVDKRNIQGH 77
+V+L + GA VN GLDN+ TPL +D + L K+LI+ GAD++K+N G
Sbjct: 53 IVKLFINLGANVN--GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110
Query: 78 KPL 80
PL
Sbjct: 111 TPL 113
Score = 29.8 bits (67), Expect = 2.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNV 38
++ N D G+ PL+ +VS N + LL+ G +N+
Sbjct: 249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI 286
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 36.8 bits (85), Expect = 0.017
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 34/134 (25%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVP---------------------- 39
N +++D G T L +A+S + + R+L ++ + P
Sbjct: 583 NVHIRDANGNTALWNAISAKHHKIFRILYHFASISD-PHAAGDLLCTAAKRNDLTAMKEL 641
Query: 40 ---GLDNDTPLHLAARDVRPALA-------KLLIQYGADVDKRNI-QGHKPLEYLDVISR 88
GL+ D+ H A ++ A+A +LLI GADVDK N P E +++ +
Sbjct: 642 LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK 701
Query: 89 DDIKTDILTALSLP 102
++ I S+P
Sbjct: 702 RELGHSITIVDSVP 715
Score = 35.2 bits (81), Expect = 0.057
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPL 47
++P++ D+ G TPLH A S G E V +LL+ V++ + +T L
Sbjct: 549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
Score = 34.5 bits (79), Expect = 0.098
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN+ N L S GN +++ LL+A ++ TPLH+AA +
Sbjct: 522 DPNMASN-----LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLV 576
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+++ +V R+ G+ L
Sbjct: 577 LLKHACNVHIRDANGNTAL 595
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 36.4 bits (84), Expect = 0.021
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 6 KDNAGWTPLHDAV--SIGNESVVRLLLEAGALVNVPGLDNDTPLHL-------------- 49
KD+AG T LH + + +++LL E G +N P +T LH
Sbjct: 313 KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPE 372
Query: 50 AARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTAL 99
D+R + + LI GAD+ N G+ PL +++ + DI+ L
Sbjct: 373 TDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCL 422
Score = 30.3 bits (68), Expect = 2.0
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRL-----LLEAGALVNVPGLDNDTPLHLAARDVR 55
N V + +G TPLH ++ + + + LL +N+P + TPL L R+ R
Sbjct: 489 NNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNR 547
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 36.2 bits (84), Expect = 0.025
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNV----------PGLD----NDTPLHLAARDVR 55
G T LH A N +V+LLLE GA V G+D ++PL+ AA
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187
Query: 56 PALAKLLIQYGADV 69
P++ LL + AD+
Sbjct: 188 PSIVALLSEDPADI 201
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 35.1 bits (81), Expect = 0.057
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 25 VVRLLLEAGALVNVPGLDNDTPL--HLAARDVRPA----LAKLLIQYGADVDKRNIQGHK 78
+V+LL++ GA VN G +TPL L R++ + KLL+++GAD++ + G
Sbjct: 52 IVKLLIDNGADVNYKGY-IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVS 110
Query: 79 PL 80
P+
Sbjct: 111 PI 112
Score = 32.8 bits (75), Expect = 0.25
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 25 VVRLLLEAGALVNVPGLDNDT-PLHLAARDVRPALAKLLIQYGADVDKR 72
+ LL G VN N L+L +DV+ + KLLI GADV+ +
Sbjct: 18 ALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK 66
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 35.0 bits (80), Expect = 0.067
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRP-ALAKLL 62
N+ D G T LH AV +S+V LLLE+G+ VN+ + T + +A + R L K+L
Sbjct: 446 NMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKML 505
Query: 63 IQYGADVD 70
+ + +D
Sbjct: 506 LCHKPTLD 513
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 33.5 bits (77), Expect = 0.17
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 179 RAILSGIKAVDYTWI-----SRSLEIGKVLPVEEFEILGTVDYPLAKP 221
+A SG+ VDYTW+ + + G+VL + I G DY
Sbjct: 512 KAWKSGLVPVDYTWVKPVQVPKGAKSGEVLYKGQKTIRGKRDYITIVK 559
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 31.1 bits (70), Expect = 0.68
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 2 NPNVK----DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRP 56
+P +N+ PL A+ N+ +LL+ GA VN + TPL+++
Sbjct: 58 DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCL 117
Query: 57 ALAKLLIQYGADVDKRNIQGHKPLEYLDVISR 88
++L+ YGAD+ NIQ + + +++
Sbjct: 118 KCLEILLSYGADI---NIQTNDMVTPIELALM 146
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 30.6 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 20/46 (43%)
Query: 5 VKDN---AGW-----------TPLHDAVSIGNESVVRLLLEAGALV 36
VKDN AG TP DA +VV L AGA+V
Sbjct: 76 VKDNIDVAGLPTTAACPAFAYTPERDA------TVVARLRAAGAIV 115
>gnl|CDD|218776 pfam05845, PhnH, Bacterial phosphonate metabolism protein (PhnH).
This family consists of several bacterial PhnH
sequences which are known to be involved in phosphonate
metabolism.
Length = 192
Score = 29.1 bits (66), Expect = 2.6
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 28/73 (38%)
Query: 13 PLHDAVSIGNESVVRLLLEA----GALVNVPG-------------------LDNDTPLHL 49
P+HDA + R LL+A G +V +PG LDN+TP+ L
Sbjct: 8 PVHDA-----QQAFRALLDAMARPGRIVTLPGALEPPAPLSPAAAAVLLTLLDNETPVWL 62
Query: 50 AARDVRPALAKLL 62
PA+ L
Sbjct: 63 DPALDDPAVRSWL 75
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 28.7 bits (64), Expect = 2.9
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 27 RLLLEAGALVNVP-GLDNDTPLHLAARDVRPALAKLLI-QYGADVDKRNIQGHKPLEYLD 84
+LL+E GA +N + +TPLH+A LA L Q G +++ N P Y
Sbjct: 75 KLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP--YYV 132
Query: 85 VISRDDIK-TDILTA 98
R D K +IL A
Sbjct: 133 ACERHDAKMMNILRA 147
>gnl|CDD|173917 cd02166, NMNAT_Archaea, Nicotinamide/nicotinate mononucleotide
adenylyltransferase, archaeal. This family of archaeal
proteins exhibits nicotinamide-nucleotide
adenylyltransferase (NMNAT) activity utilizing the
salvage pathway to synthesize NAD. In some cases, the
enzyme was tested and found also to have the activity of
nicotinate-nucleotide adenylyltransferase an enzyme of
NAD de novo biosynthesis, although with a higher Km. In
some archaeal species, a number of proteins which are
uncharacterized with respect to activity, are also
present.
Length = 163
Score = 28.4 bits (64), Expect = 3.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 3 PNVKDNAGW-------TPLHDAVSIGNESVVRLLLEAGALVNVP 39
P+++ N+ W TP D V GN V RL EAG V P
Sbjct: 75 PDIERNSLWVSYVESLTPPFDVVYSGNPLVARLFKEAGYEVRRP 118
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is
designated urea amidolyase [Central intermediary
metabolism, Nitrogen metabolism].
Length = 561
Score = 29.2 bits (66), Expect = 3.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 20/46 (43%)
Query: 5 VKDN---AGW-----------TPLHDAVSIGNESVVRLLLEAGALV 36
VKDN AG TP DA +VV LL AGA+V
Sbjct: 39 VKDNIDVAGLPTTAACPAFAYTPEEDA------TVVALLRAAGAIV 78
>gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase;
Provisional.
Length = 174
Score = 28.3 bits (64), Expect = 4.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 3 PNVKDNAGW-------TPLHDAVSIGNESVVRLLLEAGALVNVP 39
P+++ N+ W TP D V GN V RL EAG V P
Sbjct: 76 PDIEFNSIWVSHVESYTPPFDVVYTGNPLVARLFREAGYEVRQP 119
>gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus). Members of this
family catalyze the reduction of the 5,6-double bond of
a uridine residue on tRNA. Dihydrouridine modification
of tRNA is widely observed in prokaryotes and
eukaryotes, and also in some archae. Most
dihydrouridines are found in the D loop of t-RNAs. The
role of dihydrouridine in tRNA is currently unknown,
but may increase conformational flexibility of the
tRNA. It is likely that different family members have
different substrate specificities, which may overlap.
Dus 1 from Saccharomyces cerevisiae acts on
pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and
pre-tRNA-Leu. Dus 1 is active as a single subunit,
requiring NADPH or NADH, and is stimulated by the
presence of FAD. Some family members may be targeted to
the mitochondria and even have a role in mitochondria.
Length = 309
Score = 28.4 bits (64), Expect = 5.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 24 SVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPAL----AKLLIQYGAD 68
+ +L E + +P L+ TPL + PAL AKL+ GAD
Sbjct: 33 AKAQLRPEKQRELMLPELEEPTPLAVQLGGSDPALLAEAAKLVADLGAD 81
>gnl|CDD|181609 PRK09009, PRK09009, C factor cell-cell signaling protein;
Provisional.
Length = 235
Score = 28.1 bits (63), Expect = 5.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 184 GIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRS 225
+K + W RSL+ G VL + GT D L+KPF ++
Sbjct: 158 FLKTLSIEW-QRSLKHGVVLALHP----GTTDTALSKPFQQN 194
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 28.0 bits (63), Expect = 8.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 46 PLHLAARDVRPALA 59
PLHL+ R V PALA
Sbjct: 143 PLHLSMRSVAPALA 156
>gnl|CDD|237596 PRK14053, PRK14053, methyltransferase; Provisional.
Length = 194
Score = 27.5 bits (61), Expect = 9.7
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 114 NCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIA 173
+ I +V A ++ + + KT + G + IIV+ + SN+ +L+ G R +A
Sbjct: 22 SRIAVVTLASSIESFPEAAIWGSSKTENLGVE-KIIVNVISNSNIRYVLLCGGESRGHLA 80
Query: 174 TCNVLRAILSGI 185
++L +GI
Sbjct: 81 GHSLLAIHANGI 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,842,182
Number of extensions: 1735623
Number of successful extensions: 1688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1634
Number of HSP's successfully gapped: 104
Length of query: 348
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 250
Effective length of database: 6,590,910
Effective search space: 1647727500
Effective search space used: 1647727500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)