RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3910
(348 letters)
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 105 bits (266), Expect = 3e-28
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNVKD+AGWTPLH+A + G+ VV LLL+ ALVN G ND+PLH AA++ + KL
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ YGA + NI G +P++Y
Sbjct: 95 LLSYGASRNAVNIFGLRPVDY 115
Score = 87.5 bits (218), Expect = 3e-21
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALA 59
+P ++ G T LH A G+ V LL+ G+ NV D+ TPLH A +
Sbjct: 3 DPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVV 59
Query: 60 KLLIQYGADVDKRNIQGHKPL 80
+LL+Q+ A V+ Q PL
Sbjct: 60 ELLLQHKALVNTTGYQNDSPL 80
Score = 78.6 bits (195), Expect = 4e-18
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N +PLHDA G+ +V+LLL GA N + P+ + +L L
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Query: 62 LIQYGAD 68
+ +
Sbjct: 128 PEKNESS 134
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger,
zinc-binding protein, ubiquitin LI antitumor protein;
1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Length = 210
Score = 97.5 bits (242), Expect = 4e-24
Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 21/224 (9%)
Query: 118 IVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNV 177
+V+ L Q L++ L A T S V ++V G +T
Sbjct: 3 LVLIGSGLSSEQQKMLSELAVIL--KA----KKYTEFDSTVTHVVVPGDA---VQSTLKC 53
Query: 178 LRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLF 237
+ IL+G + + W+ L E++EI RSR N+E LLP LF
Sbjct: 54 MLGILNGCWILKFEWVKACLRRKVCEQEEKYEIPEG--------PRRSRLNREQLLPKLF 105
Query: 238 NGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHR 297
+G YL +++ + GG +L+R+P P+S + + + RP
Sbjct: 106 DGCYFYLWGT---FKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSD 162
Query: 298 LYNLSQAIVYSEEA-LPRRLYNMEHVKALGLSWVRACVEQFEIV 340
+Q I+Y + V SW CV FE++
Sbjct: 163 QRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVMSFELL 206
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 94.4 bits (236), Expect = 4e-24
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N G PLH A G ++ LL GA +N P + TPL A + + KL
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ GAD + G E
Sbjct: 92 LLSKGADKTVKGPDGLTAFEA 112
Score = 79.4 bits (197), Expect = 2e-18
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+ A+ G+ V+ + G VN PLH AA + + + L+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 66 GADVDKRNIQGHKPL 80
GAD++ + PL
Sbjct: 63 GADINAPDKHHITPL 77
Score = 70.1 bits (173), Expect = 4e-15
Identities = 21/59 (35%), Positives = 25/59 (42%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ N D TPL AV G+ S V+LLL GA V G D T AL +
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 95.2 bits (238), Expect = 9e-24
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NV + TPLH A S G+ +V+ LL+ A +N + PLH A + +A+
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ GA V N G P++
Sbjct: 124 LVANGALVSICNKYGEMPVDK 144
Score = 93.3 bits (233), Expect = 5e-23
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D+ G++PLH A G +VV +L+ GA +NV +DTPLHLAA + +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+QY AD++ N G+ PL
Sbjct: 91 LLQYKADINAVNEHGNVPL 109
Score = 92.5 bits (231), Expect = 9e-23
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + G PLH A G + V L+ GALV++ + P+ A +R L +
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156
Query: 62 LIQYGADVDKRNI-----QGH 77
+ G ++++ +G
Sbjct: 157 AEKMGQNLNRIPYKDTFWKGT 177
Score = 80.2 bits (199), Expect = 3e-18
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+ GN VRL L+ +N +PLH A R+ R A+ ++LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 66 GADVDKRNIQGHKPL 80
GA ++ N PL
Sbjct: 62 GARINVMNRGDDTPL 76
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 93.7 bits (234), Expect = 3e-23
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL-DNDTPLHLAARDVRPALAK 60
+ + D G T L +G++ VRLL EAGA ++ + T LH+AA VRP + +
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
L++ GAD++ + +G LE
Sbjct: 128 ALVELGADIEVEDERGLTALEL 149
Score = 81.4 bits (202), Expect = 1e-18
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 2 NPNVKD-NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ + +D G T LH A VV L+E GA + V T L LA ++
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 160
Query: 61 LLIQYGADVDKRNI 74
+Q+G + +
Sbjct: 161 NPMQFGRRIGLEKV 174
Score = 74.8 bits (185), Expect = 3e-16
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+ TP A +E + LLE V+ + T L A +LL +
Sbjct: 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98
Query: 66 GADVDKRNIQG 76
GAD+D R+++G
Sbjct: 99 GADLDHRDMRG 109
Score = 72.5 bits (179), Expect = 2e-15
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ + G G+ A V + +TP AAR
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALS 61
Query: 61 LLIQYGADVDKRNIQGHKPL 80
L++ DVD + G L
Sbjct: 62 QLLE-DRDVDAVDENGRTAL 80
Score = 40.6 bits (96), Expect = 2e-04
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 16/47 (34%)
Query: 2 NPNVKDNAGWTPLHDAVS----------------IGNESVVRLLLEA 32
+ V+D G T L A IG E V+ +L
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181
Score = 38.2 bits (90), Expect = 0.001
Identities = 5/48 (10%), Positives = 10/48 (20%), Gaps = 3/48 (6%)
Query: 33 GALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ + + + +D ADV P
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPW 48
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 96.0 bits (240), Expect = 3e-23
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + K + TPL+ A + V+ LLE+GA VN G D+PLH AR LA L
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACL 184
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ +GAD +N +G +P+E
Sbjct: 185 LMDFGADTQAKNAEGKRPVEL 205
Score = 92.1 bits (230), Expect = 9e-22
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N+ +PLH+A G+ S V++LL+ GA VN D TPL A L
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+Q+GA V + P+
Sbjct: 88 LLQHGASVQPES-DLASPI 105
Score = 87.9 bits (219), Expect = 3e-20
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
+ W+P+H+A G++ +R L+ G VN+ D+ +PLH A + K+L+++GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 69 VDKRNIQGHKPL 80
V+ H PL
Sbjct: 62 VNGVTADWHTPL 73
Score = 84.4 bits (210), Expect = 5e-19
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + +PLH +E + LL++ GA + P+ L LA+L
Sbjct: 159 DVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQL 215
Query: 62 LIQYGADVDKRNIQGHKPL 80
++ + +
Sbjct: 216 FLEREGPPSLMQLCRLRIR 234
Score = 82.9 bits (206), Expect = 1e-18
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + +P+H+A G+ V L+ G ++ TPL+LA + + A K
Sbjct: 94 SVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 152
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GADV++ PL
Sbjct: 153 LLESGADVNQGK-GQDSPL 170
Score = 71.3 bits (176), Expect = 2e-14
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ K+ G P+ + +L LE ++ L + KL
Sbjct: 191 DTQAKNAEGKRPVELVPP--ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKL 248
Query: 62 LIQYGA 67
++
Sbjct: 249 VLPEDL 254
Score = 50.5 bits (122), Expect = 2e-07
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 8/48 (16%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHL 49
P++ + + +L+L LHL
Sbjct: 222 PPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL--------KQFLLHL 261
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 96.0 bits (240), Expect = 5e-23
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + K + TPL+ A + V+ LLE+GA VN G D+PLH R LA L
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACL 240
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ +GAD +N +G +P+E
Sbjct: 241 LMDFGADTQAKNAEGKRPVEL 261
Score = 91.4 bits (228), Expect = 2e-21
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ W+P+H+A G++ +R L+ G VN+ D+ +PLH A + K+L+
Sbjct: 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 64 QYGADVDKRNIQGHKPL 80
++GA V+ H PL
Sbjct: 113 KHGAQVNGVTADWHTPL 129
Score = 91.0 bits (227), Expect = 3e-21
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N+ +PLH+A G+ S V++LL+ GA VN D TPL A L
Sbjct: 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+Q+GA V + P+
Sbjct: 144 LLQHGASVQPES-DLASPI 161
Score = 90.6 bits (226), Expect = 5e-21
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALA 59
N TPL +A G+ V LLL+ GA V ++D +P+H AAR
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECV 173
Query: 60 KLLIQYGADVDKRNIQGHKPL 80
LI YG ++D + PL
Sbjct: 174 NSLIAYGGNIDHKISHLGTPL 194
Score = 81.4 bits (202), Expect = 9e-18
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + +P+H+A G+ V L+ G ++ TPL+LA + + A K
Sbjct: 150 SVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208
Query: 62 LIQYGADVDKRN 73
L++ GADV++
Sbjct: 209 LLESGADVNQGK 220
Score = 74.8 bits (185), Expect = 1e-15
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + +PLH V +E + LL++ GA + P+ L + A
Sbjct: 215 DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA-QLF 272
Query: 62 LIQYGADVDK 71
L + GA + K
Sbjct: 273 LEREGASLPK 282
Score = 61.7 bits (151), Expect = 5e-11
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
M+ G P G LL + + + + +P+H AA +
Sbjct: 24 MDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLR 76
Query: 61 LLIQYGADVDKRNIQGHKPL 80
LI G V+ PL
Sbjct: 77 NLISQGWAVNIITADHVSPL 96
Score = 46.3 bits (111), Expect = 5e-06
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVP 39
+ K+ G P+ + + L GA + P
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPKP 283
Score = 28.2 bits (64), Expect = 3.3
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 49 LAARDVRPALAKLLIQYGADVDKRN-----IQGHKPLEYLDV 85
+ + + L+ G+ + + + G KP D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF 42
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 94.2 bits (235), Expect = 6e-23
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLL-EAGALVNVPGLDNDTPLHLAARDVRPALAK 60
N D AG T L+ A G++ +V +L + +N DT LH AA + +
Sbjct: 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LL+ GA D RNI+ +
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDM 179
Score = 88.8 bits (221), Expect = 7e-21
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N ++ G T LH A G +V+LLL GA ++ ++ +A +L K
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
A N + + E
Sbjct: 192 KQGTDAVRTLSNAEDYLDDED 212
Score = 82.7 bits (205), Expect = 9e-19
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + PLH+A GN S +R L+ VN T L+ A + ++
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124
Query: 62 LI-QYGADVDKRNIQGHKPL 80
L Q +++++N G L
Sbjct: 125 LFTQPNIELNQQNKLGDTAL 144
Score = 71.9 bits (177), Expect = 7e-15
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + T S G R L V D PLH AA+ + +
Sbjct: 37 DIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRE 91
Query: 62 LIQYGADVDKRNIQGHKPL 80
+ V+ + G L
Sbjct: 92 CLDNRVGVNGLDKAGSTAL 110
Score = 61.1 bits (149), Expect = 4e-11
Identities = 3/51 (5%), Positives = 16/51 (31%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
++++ A + S+++ A+ + ++ +
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 97.6 bits (244), Expect = 9e-23
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PN G TPLH AV N +V+LLL G + P + TPLH+AA+ + +A+
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+QYG + ++QG PL
Sbjct: 231 LLQYGGSANAESVQGVTPL 249
Score = 96.0 bits (240), Expect = 3e-22
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ G+TPLH A GN +V+ LL+ A VN +PLH AA+ + L
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L++ GA ++ + G PL
Sbjct: 363 LLKNGASPNEVSSDGTTPLAI 383
Score = 95.3 bits (238), Expect = 5e-22
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + G TPLH A G+ +V LLL A N+ TPLHL A++ +A +
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 62 LIQYGADVDKRNIQGHKPL 80
LI++G VD G+ PL
Sbjct: 297 LIKHGVMVDATTRMGYTPL 315
Score = 94.5 bits (236), Expect = 9e-22
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ +G TPLH A +G+ +V+ LL+ GA NV + +TPLH+AAR +AK
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+Q A V+ + PL
Sbjct: 66 LLQNKAKVNAKAKDDQTPL 84
Score = 94.5 bits (236), Expect = 1e-21
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P+ G+TPLH A V R LL+ G N + TPLHLAA++ + L
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ A+ + N G PL
Sbjct: 264 LLSKQANGNLGNKSGLTPL 282
Score = 94.5 bits (236), Expect = 1e-21
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NPN+ AG TPLH A G+ V LLE A TPLH+AA+ + +A+L
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ A + G PL
Sbjct: 165 LLERDAHPNAAGKNGLTPL 183
Score = 93.7 bits (234), Expect = 2e-21
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N K TPLH A IG+ ++V+LLLE A N+ TPLH+AAR+
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ A +G PL
Sbjct: 132 LLEKEASQACMTKKGFTPL 150
Score = 93.7 bits (234), Expect = 2e-21
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV + TPLH A G+ V + LL+ A VN D+ TPLH AAR + KL
Sbjct: 39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ A+ + GH PL
Sbjct: 99 LLENNANPNLATTAGHTPL 117
Score = 92.9 bits (232), Expect = 3e-21
Identities = 27/79 (34%), Positives = 34/79 (43%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ G+TPLH A G V LLLE A N G + TPLH+A + KL
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ G G+ PL
Sbjct: 198 LLPRGGSPHSPAWNGYTPL 216
Score = 92.6 bits (231), Expect = 4e-21
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N+ + +G TPLH G+ V +L++ G +V+ TPLH+A+ L K
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+Q+ ADV+ + G+ PL
Sbjct: 330 LLQHQADVNAKTKLGYSPL 348
Score = 84.9 bits (211), Expect = 2e-18
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N K G++PLH A G+ +V LLL+ GA N D TPL +A R ++ +
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395
Query: 62 LIQY---GADVDKRNIQGHKPLEYLD 84
L + V + E +D
Sbjct: 396 LKVVTDETSFVLVSDKHRMSFPETVD 421
Score = 58.7 bits (143), Expect = 9e-10
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLL---LEAGALVNVPGLDNDTPLHLAARDVRPAL 58
+PN + G TPL A +G SV +L + + V V +
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV-------- 420
Query: 59 AKLLIQYGADVDKRNI 74
++ D + I
Sbjct: 421 -DEILDVSEDEGEELI 435
Score = 52.5 bits (127), Expect = 9e-08
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 33 GALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
G G TPLH+A+ + K L+Q GA + N++ PL
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL 51
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 92.1 bits (230), Expect = 1e-22
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N D G+TPL A + G +VV LL+ GA + G ++ L LA + K+
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ G DV++ + G PL
Sbjct: 88 LLDCGVDVNEYDWNGGTPL 106
Score = 89.8 bits (224), Expect = 6e-22
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P + + L A S G +V++LL+ G VN + TPL A K+
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GAD G+ +
Sbjct: 121 LLESGADPTIETDSGYNSM 139
Score = 86.7 bits (216), Expect = 9e-21
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D G TPL AV + V++LLE+GA + + LA ++ ++
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153
Query: 62 LIQYGADVDKRN 73
+ + + +
Sbjct: 154 IESHLLKLLQNI 165
Score = 81.7 bits (203), Expect = 8e-19
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
A +H + G + +E ++N + TPL AA + A+ + L+Q GAD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 69 VDKRNIQGHKPL 80
L
Sbjct: 62 PQLLGKGRESAL 73
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 94.9 bits (237), Expect = 1e-22
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ D G + + A++ N +V LL AGAL N+ L+N+ PLH AA + K+
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKI 80
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ G D + + +G+ L
Sbjct: 81 LLFSGLDDSQFDDKGNTAL 99
Score = 83.3 bits (207), Expect = 2e-18
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N+ +N PLH A ++ + +V++LL +G + +T L+ A KL
Sbjct: 56 LKNLLEN--EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113
Query: 62 LIQYGADVDKRNIQGHK-PL 80
++ + G K
Sbjct: 114 FVKKNWRLMFYGKTGWKTSF 133
Score = 82.6 bits (205), Expect = 3e-18
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND---TPLHLAARDVRPAL 58
+ + D+ G T L+ AV GN V+L ++ + T + A ++
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAVMLNDVSI 144
Query: 59 AKLLIQYGADVDKRNIQGHKPL 80
+ +
Sbjct: 145 VSYFLSEIPSTFDLA-ILLSCI 165
Score = 80.7 bits (200), Expect = 1e-17
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTP-LHLAARDVRPALAKLL 62
+ +H + G+ ++ LLL+ N P + LA + + + L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214
Query: 63 IQYGADVDKRNIQ----GHKPL-EYLDVISRD-DIK-TDILTALSL 101
+Y ++ N++ + + + I + + K L +
Sbjct: 215 FKYDINIYSANLENVLLDDAEIAKMI--IEKHVEYKSDSYTKDLDI 258
Score = 76.8 bits (190), Expect = 3e-16
Identities = 7/82 (8%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 2 NPNVKDNAGWTP-LHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ N ++ + P + A+ + +++ L + + + +AK
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAK 238
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
++I+ + + +
Sbjct: 239 MIIEKHVEYKSDSYTKDLDIVK 260
Score = 55.2 bits (134), Expect = 7e-09
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G ++ ++ L + + + + A D L L+ GA
Sbjct: 1 GMDLSR--INTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 70 DKRN 73
+
Sbjct: 58 NLLE 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 91.3 bits (228), Expect = 2e-22
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N+ D G TPL AV + V LL GA + TP+ LA + ++
Sbjct: 94 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 62 LIQYGADVDKRNIQGHKP 79
+ + + + N+ P
Sbjct: 154 IENHILKLFQSNLVPADP 171
Score = 90.9 bits (227), Expect = 3e-22
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P++ + L A + G +V LLLE +N+ + TPL A R +
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ GAD+ G+ P+
Sbjct: 121 LLARGADLTTEADSGYTPM 139
Score = 89.8 bits (224), Expect = 8e-22
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D G+TPL A + G VR LLE GA ++ + ++ L LA+ + LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 63 IQYGADVDKRNIQGHKPL 80
++ D++ + G PL
Sbjct: 89 LERDVDINIYDWNGGTPL 106
Score = 77.5 bits (192), Expect = 2e-17
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGA-LVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
+H + G ++ L G LVN P TPL A+ + L+++GAD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 69 VDKRNIQGHKPL 80
+ L
Sbjct: 62 PHILAKERESAL 73
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 94.5 bits (236), Expect = 2e-22
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + G T LH A N +V+ L+E GA +N P + PLH AA +A+
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124
Query: 62 LIQYGADVDKRNIQGHKPLEY------LDV----ISRDDIKTDILTALSLPRLSAAPPPS 111
LI GA V N +G PL+ ++ ++R + DI A
Sbjct: 125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV--DIEAARKE--------EE 174
Query: 112 LPNCIDIV 119
D
Sbjct: 175 RIMLRDAR 182
Score = 89.5 bits (223), Expect = 1e-20
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N +G T LH A + G V++LL++A VN+ D TPLH AA + ++
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L++ D++ N G +
Sbjct: 251 LVENLCDMEAVNKVGQTAFDV 271
Score = 80.2 bits (199), Expect = 2e-17
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N+KD GWTPLH A G E R+L+E + T +A D+ L +L
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
Query: 62 LIQYGADV-DKRN 73
+ +KR
Sbjct: 284 QKKQNLLHSEKRE 296
Score = 79.1 bits (196), Expect = 6e-17
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
VK + G L A S G+ V LLE GA +N +D T LH A D + K
Sbjct: 33 KTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GA++++ + +G PL
Sbjct: 92 LVENGANINQPDNEGWIPL 110
Score = 71.4 bits (176), Expect = 3e-14
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ ++ G TPL A E +++ + G+D + R + +
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIMLRDARQW 184
Query: 62 LIQYGADVDKRNIQGHKPL 80
L + + G L
Sbjct: 185 LNSGHINDVRHAKSGGTAL 203
Score = 68.3 bits (168), Expect = 3e-13
Identities = 18/77 (23%), Positives = 26/77 (33%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N + + I + L T LH+AA + KLLI
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 64 QYGADVDKRNIQGHKPL 80
Q DV+ ++ G PL
Sbjct: 220 QARYDVNIKDYDGWTPL 236
Score = 67.1 bits (165), Expect = 7e-13
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLL 62
+ D IG+E+ + + V +D A L
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK--FDDGAVFLAACSSGDTEEVLRL 59
Query: 63 IQYGADVDKRNIQGHKPL 80
++ GAD++ N+ G L
Sbjct: 60 LERGADINYANVDGLTAL 77
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 90.1 bits (225), Expect = 2e-22
Identities = 39/79 (49%), Positives = 50/79 (63%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N KD G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KL
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GADV+ ++ G PL
Sbjct: 87 LLEAGADVNAKDKNGRTPL 105
Score = 80.1 bits (199), Expect = 1e-18
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL++ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 70 DKRNIQGHKPL 80
+ ++ G PL
Sbjct: 62 NAKDKNGRTPL 72
Score = 77.0 bits (191), Expect = 1e-17
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N KD G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KL
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 62 LIQYGA 67
L++ GA
Sbjct: 120 LLEAGA 125
Score = 44.3 bits (106), Expect = 4e-06
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ TPLHLAAR+ + KLL++ GADV+ ++ G PL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 91.3 bits (228), Expect = 2e-22
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + KD G PLH+A S G+ V LL++ GA+VNV L TPLH AA + + KL
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+Q+GAD K+N G+ PL+
Sbjct: 127 LLQHGADPTKKNRDGNTPLDL 147
Score = 85.9 bits (214), Expect = 2e-20
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + TPLH A SVV LL+ GA V+ PLH A +A+L
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+++GA V+ ++ PL
Sbjct: 94 LVKHGAVVNVADLWKFTPL 112
Score = 75.9 bits (188), Expect = 8e-17
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKLLI 63
++ L +A G+ V+ L + VN ++ TPLH AA R ++ + L+
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 64 QYGADVDKRNIQGHKPL 80
Q+GADV ++ G PL
Sbjct: 63 QHGADVHAKDKGGLVPL 79
Score = 74.7 bits (185), Expect = 2e-16
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NV D +TPLH+A + G + +LLL+ GA D +TPL L + L
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDL 158
Query: 62 LIQYGA 67
L A
Sbjct: 159 LRGDAA 164
Score = 47.8 bits (115), Expect = 7e-07
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL 35
+P K+ G TPL G+ + LL AL
Sbjct: 133 DPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAAL 165
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 89.4 bits (223), Expect = 2e-22
Identities = 30/81 (37%), Positives = 42/81 (51%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + G TPLH A G+ +V+LLL GA VN D +TP HLA ++ + KL
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L GADV+ R+ +
Sbjct: 94 LDAKGADVNARSWGSSHHHHH 114
Score = 85.5 bits (213), Expect = 7e-21
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
G TPLH+A G+ V+ LL GA VN D +TPLHLAA++ + KLL+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 64 QYGADVDKRNIQGHKPL 80
GADV+ R+ G+ P
Sbjct: 63 AKGADVNARSKDGNTPE 79
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 93.1 bits (232), Expect = 3e-22
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL-DNDTPLHLAARDVRPALAK 60
+ + D G T L +G++ VRLL EAGA ++ + T LH+AA VRP + +
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
L++ GAD++ + +G LE
Sbjct: 129 ALVELGADIEVEDERGLTALEL 150
Score = 82.3 bits (204), Expect = 2e-18
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 2 NPNVKD-NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ + +D G T LH A VV L+E GA + V T L LA ++
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 161
Query: 61 LLIQYGADVDKRNI 74
+Q+G + +
Sbjct: 162 NPMQFGRRIGLEKV 175
Score = 73.4 bits (181), Expect = 3e-15
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+ TP A +E + LLE V+ + T L A +LL +
Sbjct: 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99
Query: 66 GADVDKRNIQG 76
GAD+D R+++G
Sbjct: 100 GADLDHRDMRG 110
Score = 72.3 bits (178), Expect = 7e-15
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ G G+ A V + +TP AAR L+
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL 65
Query: 64 QYGADVDKRNIQGHKPL 80
+ DVD + G L
Sbjct: 66 E-DRDVDAVDENGRTAL 81
Score = 68.4 bits (168), Expect = 1e-13
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 24/103 (23%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL-------------------- 41
+ V+D G T L A I + ++ G + + +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195
Query: 42 --DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82
+L + + A+ ++ + LEY
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED--GLEY 236
Score = 51.4 bits (124), Expect = 1e-07
Identities = 6/48 (12%), Positives = 9/48 (18%), Gaps = 2/48 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAA 51
K G + + A D + L A
Sbjct: 193 VEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA--KDYEDGLEYAV 238
Score = 37.6 bits (88), Expect = 0.004
Identities = 5/49 (10%), Positives = 10/49 (20%), Gaps = 3/49 (6%)
Query: 32 AGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ + + + +D ADV P
Sbjct: 4 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPW 49
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 94.9 bits (237), Expect = 3e-22
Identities = 32/81 (39%), Positives = 42/81 (51%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + KD G PLH+A S G+ V LLL+ GA VN L TPLH AA R + L
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ +GAD N G ++
Sbjct: 143 LLSHGADPTLVNCHGKSAVDM 163
Score = 94.9 bits (237), Expect = 3e-22
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N K+ TPLH A + V+ +L + GA +N T LH AA +L
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ YG+D ++QG +
Sbjct: 299 LLSYGSDPSIISLQGFTAAQM 319
Score = 87.6 bits (218), Expect = 1e-19
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + D TPLH A +V+LLL+ GA V+ PLH A + +L
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+++GA V+ ++ PL
Sbjct: 110 LLKHGACVNAMDLWQFTPL 128
Score = 85.2 bits (212), Expect = 7e-19
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N D+ G T LH A G+ RLLL G+ ++ L T + V +
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV-----QQ 326
Query: 62 LIQYGADVDKRNIQG 76
++ + ++
Sbjct: 327 ILSESTPMRTSDVDY 341
Score = 84.5 bits (210), Expect = 1e-18
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGN-ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ L +A GN E ++ LL + TPLHLAA R + +
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75
Query: 61 LLIQYGADVDKRNIQGHKPL 80
LL+Q+GADV ++ G PL
Sbjct: 76 LLLQHGADVHAKDKGGLVPL 95
Score = 83.7 bits (208), Expect = 3e-18
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIG---NESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPAL 58
+ + T LH AV+ + V LLL GA VN D TPLH+AA +
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV 262
Query: 59 AKLLIQYGADVDKRNIQGHKPL 80
++L ++GA ++ + G L
Sbjct: 263 MEVLHKHGAKMNALDSLGQTAL 284
Score = 75.2 bits (186), Expect = 2e-15
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N D +TPLH+A S V LLL GA + + + +A
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 62 LIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDI--LTAL 99
+ + + ++ + + K TAL
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215
Score = 58.3 bits (142), Expect = 9e-10
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
+P++ G+T +GNE V+ +L + D D L A++
Sbjct: 305 DPSIISLQGFTAAQ----MGNE-AVQQILSESTPMRTS--DVDYRLLEASK 348
Score = 51.3 bits (124), Expect = 2e-07
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 14/72 (19%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDV-RPALAKLLIQYGAD 68
G + L L + A + G L AAR L LL +
Sbjct: 4 GKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50
Query: 69 VDKRNIQGHKPL 80
+ + PL
Sbjct: 51 CHASDGRKSTPL 62
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 90.2 bits (225), Expect = 4e-22
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P+ + G T L G+ ++ LL+ GA NV +P+H AAR K+
Sbjct: 28 HPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+++GADV+ + G P+
Sbjct: 87 LVEHGADVNVPDGTGALPI 105
Score = 90.2 bits (225), Expect = 4e-22
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+PNV+D +G +P+HDA G +++L+E GA VNVP P+HLA ++ A+
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L +D+ +R+ +G PLE
Sbjct: 120 LAA-ESDLHRRDARGLTPLEL 139
Score = 73.6 bits (182), Expect = 4e-16
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEA-GALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
L A + G+ VR LL + T L + A+A L++ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS 60
Query: 69 VDKRNIQGHKPL 80
+ ++ G P+
Sbjct: 61 PNVQDTSGTSPV 72
Score = 68.2 bits (168), Expect = 4e-14
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ NV D G P+H AV G+ +VV L + ++ TPL LA + L +
Sbjct: 93 DVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDI 151
Query: 62 LI 63
L
Sbjct: 152 LQ 153
Score = 46.3 bits (111), Expect = 2e-06
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLE 31
+ + +D G TPL A+ G + +V +L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 93.4 bits (233), Expect = 4e-22
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 2 NPNVKD-NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ N + G TPLH AV SV+ LLL+AGA TPL A P LA+
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LL +GA + P
Sbjct: 243 LLRAHGAPEPEDGGDKLSPCSS 264
Score = 89.5 bits (223), Expect = 1e-20
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND---TPLHLAARDVRPAL 58
++ G TPLH AV + +VRLL +AGA +N P + TPLHLA ++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGRTPLHLAVEAQAASV 207
Query: 59 AKLLIQYGADVDKRNIQGHKPL 80
+LL++ GAD R G PL
Sbjct: 208 LELLLKAGADPTARMYGGRTPL 229
Score = 86.4 bits (215), Expect = 1e-19
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+++++ G T LH A +G S V L AGA V V T LHLA R A +L+
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 64 QYGADVDKRNIQGHKPLE 81
Q + +
Sbjct: 99 QPRPSHPRDASDTYLTQS 116
Score = 84.9 bits (211), Expect = 4e-19
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGA---LVNVPGLDNDTPLHLAARDVRPALAK 60
G T LH AV +E + LL A +++ T LHLAA + +
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 61 LLIQYGADVDKRNIQGHKPL 80
L GA V GH L
Sbjct: 63 KLYAAGAGVLVAERGGHTAL 82
Score = 78.4 bits (194), Expect = 9e-17
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 14/93 (15%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLD-------------NDTPLH 48
V + G T LH A + + +LL+ D + P
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 49 LAARD-VRPALAKLLIQYGADVDKRNIQGHKPL 80
+ ++ + ++ N GH PL
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162
Score = 72.6 bits (179), Expect = 1e-14
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P + G TPL A+ N + RLL GA G D +P + D
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276
Query: 62 LIQYG 66
+Y
Sbjct: 277 GDEYD 281
Score = 61.8 bits (151), Expect = 5e-11
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 3 PNVKDNAGWTPLHDAVSIGNES-VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + P E+ + + D TPLH+A + +L
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 62 LIQYGADVD-KRNIQGHKPL 80
L GAD++ G PL
Sbjct: 177 LRDAGADLNKPEPTCGRTPL 196
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 89.8 bits (224), Expect = 6e-22
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDT-PLHLAARDVRPALAK 60
NPN ++ G P+ +G+ V LLL GA N T P+H AAR+
Sbjct: 37 NPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 61 LLIQYGADVDKRNIQGHKPL 80
+L + GA +D R+ G P+
Sbjct: 96 VLHRAGARLDVRDAWGRLPV 115
Score = 87.1 bits (217), Expect = 5e-21
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR---DVRPALAK 60
L A + G VR LLEAGA N P P+ + V A+
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV----AE 61
Query: 61 LLIQYGADVDKRNIQGH-KPL 80
LL+ +GA+ + + +P+
Sbjct: 62 LLLLHGAEPNCADPATLTRPV 82
Score = 87.1 bits (217), Expect = 6e-21
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 2 NPNVKDNAGWT-PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
PN D A T P+HDA G + +L AGA ++V P+ LA +A+
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 61 LLIQYGADVDKRN------IQGHK 78
L N +G
Sbjct: 129 YLRAAAGGTRGSNHARIDAAEGPS 152
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 89.0 bits (222), Expect = 7e-22
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR---DVRPAL 58
++ + L A + G VR LLEAGA N P+ + V
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQV---- 59
Query: 59 AKLLIQYGADVDKRNIQGH-KPL 80
A+LL+ +GA+ + + +P+
Sbjct: 60 AELLLLHGAEPNCADPATLTRPV 82
Score = 87.9 bits (219), Expect = 1e-21
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDT-PLHLAARDVRPALAK 60
+PN + G P+ +G+ V LLL GA N T P+H AAR+
Sbjct: 37 DPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 61 LLIQYGADVDKRNIQGHKPL 80
+L + GA +D + G P+
Sbjct: 96 VLHRAGARLDVCDAWGRLPV 115
Score = 80.9 bits (201), Expect = 5e-19
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 2 NPNVKDNAGWT-PLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
PN D A T P+HDA G + +L AGA ++V P+ LA +A+
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 61 LLIQYGAD 68
L D
Sbjct: 129 YLHAATGD 136
Score = 55.1 bits (134), Expect = 9e-10
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 32 AGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+++ G +D L AA + + L++ GAD + N G +P+
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI 49
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 91.8 bits (229), Expect = 9e-22
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D+ G + LH A ++ N +LL+ GA ++ +TPL LAAR+ AK+
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ + A+ D + P +
Sbjct: 209 LLDHFANRDITDHMDRLPRDI 229
Score = 89.8 bits (224), Expect = 5e-21
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N++DN G TPLH AVS + V ++L+ A ++ D TPL LAAR + +
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 61 LLIQYGADVDKRNIQGHKPL 80
LI ADV+ + G L
Sbjct: 142 DLINSHADVNAVDDLGKSAL 161
Score = 87.1 bits (217), Expect = 5e-20
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + + G TPL A + E ++ L+ + A VN + LH AA A +
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GA+ D +N + PL
Sbjct: 176 LLKNGANKDMQNNREETPL 194
Score = 83.7 bits (208), Expect = 7e-19
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D G T LH A + LLEA A N+ TPLH A + ++L
Sbjct: 50 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 63 IQYGA-DVDKRNIQGHKPL 80
I+ A D+D R G PL
Sbjct: 110 IRNRATDLDARMHDGTTPL 128
Score = 79.4 bits (197), Expect = 3e-17
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 1 MNPNVKDNAGWTPLHDAVSIG-------------NESVVRLLLEAGA-LVNVPGLDNDTP 46
M+ NV+ G+TPL A G +V+ + GA L N +T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 47 LHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
LHLAAR R AK L++ AD + ++ G PL
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 94
Score = 75.2 bits (186), Expect = 7e-16
Identities = 14/72 (19%), Positives = 30/72 (41%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N ++++N TPL A G+ ++LL+ A ++ + P +A + + +L
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241
Query: 62 LIQYGADVDKRN 73
L +
Sbjct: 242 LDLEHHHHHHHH 253
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 90.6 bits (226), Expect = 2e-21
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N++DN LH A G + +LL A ++ + D+PLH+AAR+ R L
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL 195
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
+ +DV +N +G PL+
Sbjct: 196 FLSRDSDVTLKNKEGETPLQC 216
Score = 87.9 bits (219), Expect = 2e-20
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N +D+ GWTP+ A + +V+LLL G+ +N+ + + LH AA +A++
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ D+ NI G PL
Sbjct: 163 LLAAKCDLHAVNIHGDSPL 181
Score = 87.1 bits (217), Expect = 3e-20
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N ++ +PLH A G+ + +L++AGA ++ D TPL AA + K
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 62 LIQYGADVDKRNIQGHKPL 80
LI+ GA VD ++ +G L
Sbjct: 63 LIKAGALVDPKDAEGSTCL 81
Score = 84.8 bits (211), Expect = 2e-19
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + TPL +A + V+ L++AGALV+ + T LHLAA+ + +
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Query: 62 LIQYGA-DVDKRNIQGHKPL 80
L+ G DV+ ++ G P+
Sbjct: 96 LLSNGQMDVNCQDDGGWTPM 115
Score = 79.0 bits (196), Expect = 3e-17
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + G +PLH A V L L + V + + +TPL A+ + + A
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228
Query: 62 LIQYGAD 68
+ + D
Sbjct: 229 MSKALQD 235
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 90.2 bits (225), Expect = 2e-21
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D+ G + LH A ++ N +LL+ GA ++ +TPL LAAR+ AK+
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ + A+ D + P +
Sbjct: 177 LLDHFANRDITDHMDRLPRDI 197
Score = 88.2 bits (220), Expect = 9e-21
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-VNVPGLDNDTPLHLAARDVRPALAK 60
+ N++DN G TPLH AVS + V ++L+ A ++ D TPL LAAR + +
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 61 LLIQYGADVDKRNIQGHKPL 80
LI ADV+ + G L
Sbjct: 110 DLINSHADVNAVDDLGKSAL 129
Score = 87.5 bits (218), Expect = 2e-20
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + + G TPL A + E ++ L+ + A VN + LH AA A +
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GA+ D +N + PL
Sbjct: 144 LLKNGANKDMQNNREETPL 162
Score = 82.8 bits (206), Expect = 8e-19
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 3 PNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N D G T LH A + LLEA A N+ TPLH A + ++L
Sbjct: 18 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77
Query: 63 IQYGA-DVDKRNIQGHKPL 80
I+ A D+D R G PL
Sbjct: 78 IRNRATDLDARMHDGTTPL 96
Score = 77.5 bits (192), Expect = 7e-17
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N ++++N TPL A G+ ++LL+ A ++ + P +A + + +L
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 209
Query: 62 LIQYGADVDK 71
L +Y
Sbjct: 210 LDEYNLVRSP 219
Score = 58.6 bits (143), Expect = 3e-10
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 21 GNESVVRLLLEAGA-LVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKP 79
+V+ + GA L N +T LHLAAR R AK L++ AD + ++ G P
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 80 L 80
L
Sbjct: 62 L 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 88.2 bits (220), Expect = 2e-21
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + TPLH A S G+ ++V +LL+ GA VN + T LH A + +L
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
LI+YGADV ++ +
Sbjct: 119 LIKYGADVHTQSKFCKTAFDI 139
Score = 85.1 bits (212), Expect = 3e-20
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
D G +PLH A G+ S +LL AG + + TPLH+AA + + ++L+++
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 66 GADVDKRNIQGHKPL 80
GADV+ +++ L
Sbjct: 90 GADVNAKDMLKMTAL 104
Score = 76.3 bits (189), Expect = 5e-17
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKLLIQYGA 67
L +A G + VR+L+ GA D +PLHLAA+ + ++L++ G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 68 DVDKRNIQGHKPL 80
D R PL
Sbjct: 59 SRDARTKVDRTPL 71
Score = 69.0 bits (170), Expect = 2e-14
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N KD T LH A ++ VV LL++ GA V+ T ++ + LA++
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 62 L 62
L
Sbjct: 152 L 152
Score = 41.2 bits (98), Expect = 9e-05
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
D L AAR + ++L+ GA + G PL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPL 38
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 88.6 bits (221), Expect = 2e-21
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N +D +GWTPLH A G+ +V +LL+ GA VN TPL LAA + ++
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GADV+ +++GH PL
Sbjct: 99 LLKNGADVNANDMEGHTPL 117
Score = 86.3 bits (215), Expect = 2e-20
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D+AG TPL A G+ +V +LL+ GA VN ++ TPLHLAA + ++
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ GADV+ ++ G
Sbjct: 132 LLKNGADVNAQDKFGKTAF 150
Score = 77.8 bits (193), Expect = 2e-17
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ + L +A G + VR+L+ GA VN TPLHLAA + + ++L+
Sbjct: 8 HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67
Query: 64 QYGADVDKRNIQGHKPL 80
+ GADV+ + G PL
Sbjct: 68 KNGADVNAVDHAGMTPL 84
Score = 69.7 bits (172), Expect = 1e-14
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D G TPLH A G+ +V +LL+ GA VN T ++ + LA++
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 62 LIQY 65
L +
Sbjct: 165 LQKL 168
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 89.1 bits (222), Expect = 6e-21
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVP-GLDNDTPLHLAARDVRPALAKLL 62
+ G T LH A G +V LL+ GA VN + T LHLA P L LL
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 63 IQYGADVDKRNIQGHKPL 80
++ GADV++ QG+ P
Sbjct: 171 LKCGADVNRVTYQGYSPY 188
Score = 87.6 bits (218), Expect = 2e-20
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N ++N TPLH AV + LL AG + +TPLHLA A +
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 62 LIQYGAD------VDKRNIQGHKPL 80
L Q + N GH L
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCL 121
Score = 86.4 bits (215), Expect = 6e-20
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNA-GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ N ++ G T LH AV + N +V LLL+ GA VN +P L + +
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ 201
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
L Q + + + Y
Sbjct: 202 QLGQLTLENLQMLPESEDEESY 223
Score = 81.8 bits (203), Expect = 2e-18
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGA------LVNVPGLDNDTPLHLAARDVR 55
+P ++D G TPLH A G + V +L ++ ++ + T LHLA+
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129
Query: 56 PALAKLLIQYGADVDKR-NIQGHKPL 80
+ +LL+ GADV+ + G L
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTAL 155
Score = 79.9 bits (198), Expect = 1e-17
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 6 KDNAGWTPLHDAVSIGNES----VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
G + LH A+ ++ V+R + A +N TPLHLA +P +A+
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+ G D + R+ +G+ PL
Sbjct: 64 LLGAGCDPELRDFRGNTPL 82
Score = 62.6 bits (153), Expect = 1e-11
Identities = 4/52 (7%), Positives = 14/52 (26%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARD 53
+ N G++P + + + L + +++
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 87.4 bits (218), Expect = 1e-20
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N KD +G TPL ++ G + LLE GA VN L+ +TPL +A++ R + K
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L++ GAD+ R++ G
Sbjct: 153 LLELGADISARDLTGLTAEAS 173
Score = 87.1 bits (217), Expect = 1e-20
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
KD G T L AV + LL G+ VN TPL + ++
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+++GA+V+ RN++G PL
Sbjct: 120 LLEHGANVNDRNLEGETPL 138
Score = 84.7 bits (211), Expect = 9e-20
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
N +D+ TPL A +G E+ + L+E + ++ T L A ++ R +A+ L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 64 QYGADVDKRNIQGHKPL 80
G++V+ ++ G PL
Sbjct: 89 SKGSNVNTKDFSGKTPL 105
Score = 70.9 bits (175), Expect = 1e-14
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N ++ G TPL A G +V+ LLE GA ++ L T A R + K+
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 62 LIQYGA 67
+
Sbjct: 186 FTEVRR 191
Score = 60.5 bits (148), Expect = 4e-11
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKL 61
+ D G + L D+ TPL +A
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR--------DSYNRTPLMVACMLGMENAIDK 53
Query: 62 LIQYGADVDKRNIQGHKPL 80
L++ ++ ++I+G L
Sbjct: 54 LVENFDKLEDKDIEGSTAL 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 86.3 bits (215), Expect = 1e-20
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N ++ G T L +GN + R LL GA ++ +H AAR +
Sbjct: 30 NVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+++ ADV+ + +G+ PL
Sbjct: 89 LLEFQADVNIEDNEGNLPL 107
Score = 85.1 bits (212), Expect = 3e-20
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP++KD G+ +HDA G ++ LLE A VN+ + + PLHLAA++ + +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 62 LIQYGA-DVDKRNIQGHKPL 80
L+++ A +V RN +G
Sbjct: 122 LVKHTASNVGHRNHKGDTAC 141
Score = 74.7 bits (185), Expect = 2e-16
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALA 59
+ N++DN G PLH A G+ VV L++ A NV ++ T LA R +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA-SNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 60 KLLIQYGA 67
L+ GA
Sbjct: 154 SLMQANGA 161
Score = 74.0 bits (183), Expect = 4e-16
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
L A + G+ + LL+ VN T L + P +A+ L+ G
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRG 60
Query: 67 ADVDKRNIQGHKPL 80
A+ D ++ G +
Sbjct: 61 ANPDLKDRTGFAVI 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 88.1 bits (219), Expect = 1e-20
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALA 59
+P+ + G T LH+A+ N S+V L+ AGA VN P D+ TPLH AA +
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP--DSHGWTPLHCAASCNDTVIC 103
Query: 60 KLLIQYGADVDKRNIQ-GHKPLEY 82
L+Q+GA + + G E
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEK 127
Score = 79.6 bits (197), Expect = 1e-17
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 2 NPNVKDNA---GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPAL 58
+P A L DA G VV+ ++ + P + T LH A ++
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 59 AKLLIQYGADVDKRNIQGHKPL 80
LI GA+V+ + G PL
Sbjct: 70 VDFLITAGANVNSPDSHGWTPL 91
Score = 61.9 bits (151), Expect = 2e-11
Identities = 8/84 (9%), Positives = 17/84 (20%), Gaps = 4/84 (4%)
Query: 2 NPNVKD-NAGWTPLHDAVSI--GNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPAL 58
+ G T G L + + + L + + L
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171
Query: 59 AKLLIQYGADVDKRNIQGHKPLEY 82
V +R+ +
Sbjct: 172 -SFREGESVTVLRRDGPEETDWWW 194
Score = 52.3 bits (126), Expect = 4e-08
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
+ + ++ L D S + V +T AA
Sbjct: 148 SMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWWAAL 197
Score = 50.3 bits (121), Expect = 2e-07
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 26 VRLLLEAGALVNVP---GLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+R +L L+ L AA + + ++ D + N +G L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58
Score = 41.5 bits (98), Expect = 1e-04
Identities = 9/48 (18%), Positives = 10/48 (20%), Gaps = 1/48 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVV-RLLLEAGALVNVPGLDNDTPLH 48
+D T A G E V R V H
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 85.1 bits (212), Expect = 2e-20
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N KD G TPL+ A + G+ +V +LL+ GA VN TPLHLAA +A++
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+++GADV+ ++ G +
Sbjct: 99 LLKHGADVNAQDKFGKTAFDI 119
Score = 76.3 bits (189), Expect = 3e-17
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNA-GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ + + L +A G + VR+L+ GA VN TPL+LA + +
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64
Query: 61 LLIQYGADVDKRNIQGHKPL 80
+L++ GADV+ + G PL
Sbjct: 65 VLLKNGADVNAVDAIGFTPL 84
Score = 71.3 bits (176), Expect = 2e-15
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D G+TPLH A IG+ + +LL+ GA VN T ++ + LA++
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 62 LIQY 65
L +
Sbjct: 132 LQKL 135
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 87.9 bits (219), Expect = 2e-20
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ D+ + A G R L+EAG V P +N T LH AA + R L K
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 62 LIQYGADVD-KRNIQGHKPL 80
I GA VD PL
Sbjct: 61 YISKGAIVDQLGGDLNSTPL 80
Score = 87.5 bits (218), Expect = 3e-20
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 2 NPNVKDN-AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ TPLH A G+ S+V L++ GA ++ + + +HLAA+ ++
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 61 LLIQYGADVDKRNIQGHKPL 80
LI G DVD + G PL
Sbjct: 127 YLIAKGQDVDMMDQNGMTPL 146
Score = 84.0 bits (209), Expect = 4e-19
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNE-SVVRLLLEAGALVNVPG-LDNDTPLHLAARDVRPALA 59
+ ++ D G TPL A + RLLL VN+ +T LH A +
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 60 KLLIQYGADVDKRNIQGHKPL 80
LL++ GA+VD +NI+G L
Sbjct: 194 SLLLEAGANVDAQNIKGESAL 214
Score = 82.9 bits (206), Expect = 1e-18
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR-----DVRP 56
+P++ D G + +H A G+ S+V L+ G V++ + TPL AA D
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP-- 158
Query: 57 ALAKLLIQYGADVDKR-NIQGHKPL 80
+LL+ + V+ + L
Sbjct: 159 --TRLLLTFNVSVNLGDKYHKNTAL 181
Score = 81.7 bits (203), Expect = 3e-18
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 2 NPNVKDNA-GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ N+ D T LH AV GN +V+ LLLEAGA V+ + ++ L LA + +
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMIN 227
Query: 61 LLIQYGADVDKRN 73
L + N
Sbjct: 228 HLQEARQAKGYDN 240
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 89.9 bits (224), Expect = 2e-20
Identities = 11/81 (13%), Positives = 22/81 (27%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ A + V++LL E V + PA+ ++
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
+ A V R+ +
Sbjct: 342 KLAPSAPVRTRSRSRARSSAV 362
Score = 88.8 bits (221), Expect = 5e-20
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLE-----AGALVNVPGLDNDTPLHLAARDVRP 56
+P KD A TPL A+ N + L+++ + ++ ++ LH A
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224
Query: 57 ALAKLLIQYGADVDKRNIQGHKPL 80
+A ++ G DV+ + + PL
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPL 248
Score = 87.6 bits (218), Expect = 1e-19
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N D+ +H A G VR L+E G + T LHLA + AK
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 62 LIQYGADVDKRNIQGHKPL 80
L G + G KP+
Sbjct: 72 LASVGEVHSLWH--GQKPI 88
Score = 83.4 bits (207), Expect = 4e-18
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + G + LH A+ I E V +E G VN+ ++ PL+L+ R L K
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262
Query: 62 LIQYGADVDKRNIQGHK 78
L+Q + H
Sbjct: 263 LLQKTDVFLIQACPYHN 279
Score = 83.4 bits (207), Expect = 4e-18
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNES--VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALA 59
+VK G T LH V +G E ++++L++ GA ++TPL A
Sbjct: 130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL 189
Query: 60 KLLIQY-----GADVDKRNIQGHKPL 80
L++ +D N QG+ L
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSHL 215
Score = 82.2 bits (204), Expect = 1e-17
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGAL-------------VNVPGLDNDTPLH 48
+ N++DN PL+ +V + + LL+ + V + +
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295
Query: 49 LAARDVRPALAKLLIQYGADVDKRNIQGHKPLEY 82
AA + + +LL + +V + G
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVK 329
Score = 75.7 bits (187), Expect = 2e-15
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 23/100 (23%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGA---------------------LVNVPGLD 42
G P+H AV +V L+E +V
Sbjct: 78 VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK 137
Query: 43 NDTPLHLAARDVRPAL--AKLLIQYGADVDKRNIQGHKPL 80
T LH L K+L+Q GA ++ PL
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Score = 64.1 bits (157), Expect = 1e-11
Identities = 7/49 (14%), Positives = 11/49 (22%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA 50
N G +V R+ L A V ++
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 86.4 bits (215), Expect = 6e-20
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 2 NPNVKD-NAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ + D +G +PL AV + S+V+LLL+ GA VN + LH A+ L +
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
L++ GAD +N PL
Sbjct: 201 TLVRSGADSSLKNCHNDTPLMV 222
Score = 85.6 bits (213), Expect = 1e-19
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
++ +N TPLH AV SVVRLL+ AGA T HLA P +
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 62 LIQYGA----DVDKRNIQGHKPL 80
L+ A D++ RN G L
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTAL 120
Score = 85.6 bits (213), Expect = 1e-19
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDN-DTPLHLAARDVRPALA 59
++ ++ G T LH AV+ + V+LLLE GA ++ + + +PL A + ++
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 60 KLLIQYGADVDKRNIQGHKPL 80
+LL+Q+GA+V+ + G L
Sbjct: 167 QLLLQHGANVNAQMYSGSSAL 187
Score = 80.6 bits (200), Expect = 9e-18
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLE----AGALVNVPGLDNDTPLHLAARDVRPALA 59
D G TPLH AV GN V L+ G +++ TPLHLA P++
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 60 KLLIQYGADVDKRNIQGHKPL 80
+LL+ GA + G
Sbjct: 63 RLLVTAGASPMALDRHGQTAA 83
Score = 79.8 bits (198), Expect = 1e-17
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N + +G + LH A G +VR L+ +GA ++ NDTPL +A + +
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234
Query: 62 LIQYGA 67
A
Sbjct: 235 KATRPA 240
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 82.2 bits (204), Expect = 1e-19
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+ L +A G + VR+L+ GA V + TPLHLAAR+ + KLL++
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 66 GADVDKRNIQGHKPLEY 82
GADV ++ G +
Sbjct: 80 GADVXAQDKFGKTAFDI 96
Score = 64.9 bits (159), Expect = 2e-13
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ KD G TPLH A G+ VV+LLLEAGA V T ++ + LA++
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 62 L 62
L
Sbjct: 109 L 109
Score = 60.7 bits (148), Expect = 7e-12
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 17 AVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQG 76
S + L+ G+ + D L AAR + ++L+ GADV ++ G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 77 HKPL 80
PL
Sbjct: 58 STPL 61
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 86.4 bits (215), Expect = 1e-19
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 2 NPNVKDN-AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
N N ++ GWTPLH+AV + E +V LLL GA + + TP LAA L K
Sbjct: 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89
Query: 61 LLIQYGADVDKRNIQGHKPL 80
L + GADV++ + G
Sbjct: 90 LFLSKGADVNECDFYGFTAF 109
Score = 84.4 bits (210), Expect = 6e-19
Identities = 21/80 (26%), Positives = 32/80 (40%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+P ++ G TP A G+ +++L L GA VN T AA + K
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 62 LIQYGADVDKRNIQGHKPLE 81
L + GA+V+ R
Sbjct: 124 LYKRGANVNLRRKTKEDQER 143
Score = 83.3 bits (207), Expect = 1e-18
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLE-AGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ NV+ G TPL AV + +V+ LLE +N D T L LA +A+
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270
Query: 61 LLIQYGADVDKRNI 74
LL + GA D ++
Sbjct: 271 LLCKRGASTDCGDL 284
Score = 82.9 bits (206), Expect = 3e-18
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGN----ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPA 57
+ N DN G L A+ + E++ LLL+ GA VNV G TPL LA
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233
Query: 58 LAKLLI-QYGADVDKRNIQGHKPL 80
L + L+ Q +++ + G L
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTAL 257
Score = 82.5 bits (205), Expect = 4e-18
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND----------TPLHLAA 51
+ N D G+T +A G ++ L + GA VN+ + T L AA
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 52 RDVRPALAKLLI-QYGADVDKRNIQGHKPL 80
+ K+L+ + GADV+ + G L
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 81.7 bits (203), Expect = 7e-18
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLL-EAGALVNVPGLDNDTPLHLAAR----DVRP 56
+ G T L DA G+ V+++LL E GA VN L A
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 57 ALAKLLIQYGADVDKRNIQGHKPL 80
A+ LL+ +GADV+ R +G PL
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPL 223
Score = 78.7 bits (195), Expect = 6e-17
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND-TPLHLAARDVRPALAKLLIQYGAD 68
L AV + +V+ LLE GA VN + TPLH A + R + +LL+++GAD
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 69 VDKRNIQGHKPL 80
R G P
Sbjct: 65 PVLRKKNGATPF 76
Score = 42.1 bits (100), Expect = 1e-04
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQG 76
+++ L A ++ L + L++ GA+V+ + +G
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG 38
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 85.0 bits (211), Expect = 2e-19
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALA 59
+P++ ++ G T LH+AV G+ +V+ L++ G VN D+D TPLH AA +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVC 119
Query: 60 KLLIQYGADVDKRNIQGHK 78
K L++ GA V +
Sbjct: 120 KFLVESGAAVFAMTYSDMQ 138
Score = 81.1 bits (201), Expect = 4e-18
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNV---PGLDNDTPLHLAARDVRPAL 58
N N D+ GWTPLH A S N V + L+E+GA V + +
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154
Query: 59 AKLLIQYGADVDKRNIQGHKPL 80
++ L + N L
Sbjct: 155 SQFLYGVQEKMGIMNKGVIYAL 176
Score = 80.4 bits (199), Expect = 1e-17
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
L D+ G +V+ ++ ++P + T LH A + K
Sbjct: 30 RVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 62 LIQYGADVDKRNIQGHKPL 80
L+Q+G +V+ + G PL
Sbjct: 89 LVQFGVNVNAADSDGWTPL 107
Score = 73.4 bits (181), Expect = 2e-15
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 7 DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAARDVRPALAKLLIQ 64
+ G L + G V + L ++ + L + +I
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 65 YGADVDKRNIQGHKPL 80
D N +G L
Sbjct: 59 EVDDPSLPNDEGITAL 74
Score = 53.8 bits (130), Expect = 2e-08
Identities = 8/86 (9%), Positives = 21/86 (24%), Gaps = 3/86 (3%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
D + + G + L + + L +L +
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND---DELPM 189
Query: 64 QYGADVDKRNIQGHKPLEYLDVISRD 89
+ G + + + +E+ D
Sbjct: 190 KEGDCMTIIHREDEDEIEWWWARLND 215
Score = 35.3 bits (82), Expect = 0.018
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND--TPLHLAA 51
+ + L D ++ L ++ G + + +++ A
Sbjct: 164 KMGIMNKGVIYALWDY---EPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 212
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 84.0 bits (209), Expect = 2e-19
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 5 VKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQ 64
+K L A + V +L + V+ + +TPL++A + +AK LI
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 65 YGADVDKRNIQGHKPLEY 82
GAD++ +N P Y
Sbjct: 61 RGADINLQNSISDSPYLY 78
Score = 83.3 bits (207), Expect = 4e-19
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ D G TPL+ AV + + + L++ GA +N+ +D+P A R +
Sbjct: 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAY 90
Query: 62 LIQYGA-DVDKRNIQGHKPL 80
++++ D++K N G L
Sbjct: 91 MLKHATPDLNKHNRYGGNAL 110
Score = 79.0 bits (196), Expect = 1e-17
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAG-ALVNVPGLDNDTPLHLAARDVRP---- 56
+ N + G L A G+ V+LLLE G ++ T L A
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 57 -ALAKLLIQYGADVDKRNIQGHKPLEY 82
+ KLL++ GAD ++ G ++Y
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAMDY 184
Score = 70.2 bits (173), Expect = 2e-14
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNES-----VVRLLLEAGALVNVPGLDNDTPLHLAARDVRP 56
+ + +++ G+T L +AV + + +V+LL+E GA ++ T + A +
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 57 ALAKLLIQY 65
++K+L QY
Sbjct: 192 EISKILAQY 200
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 80.5 bits (200), Expect = 2e-19
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADV 69
G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KLL++ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 70 DKRNIQGHKPL 80
+ ++ G PL
Sbjct: 62 NAKDKNGRTPL 72
Score = 76.6 bits (190), Expect = 7e-18
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N KD G TPLH A G+ VV+LLLEAGA VN + TPLHLAAR+ + KL
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 62 LIQYGA 67
L++ GA
Sbjct: 87 LLEAGA 92
Score = 43.5 bits (104), Expect = 5e-06
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 42 DNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ TPLHLAAR+ + KLL++ GADV+ ++ G PL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 84.0 bits (209), Expect = 3e-19
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAG-ALVNVPGLDNDTPLHLAARDVRPALAK 60
+ +KD PLH A S+G+ ++ LL G + VN TPL A + A
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 61 LLI-QYGADVDKRNIQGHKPLEY 82
LL+ +YGA+ D + +G K +
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDV 214
Score = 83.7 bits (208), Expect = 6e-19
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N N G T LH AV V + L+E GA V + N PLH AA L +L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 62 LIQYG-ADVDKRNIQGHKPL 80
L G + V+ ++ QG PL
Sbjct: 159 LCGLGKSAVNWQDKQGWTPL 178
Score = 82.5 bits (205), Expect = 1e-18
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL-DND--TPLHLAARDVRPAL 58
KD G PLH +VS + LL VN+ D+ TP H+A +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 59 AKLLIQ--YGADVDKRNIQGHKPL 80
K L D++K QG L
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCL 111
Score = 82.1 bits (204), Expect = 1e-18
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLE--AGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ D++GWTP H A S+GN VV+ L + +N T LHLA +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 62 LIQYGADVDKRNIQGHKPL 80
LI+ GA V ++ PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144
Score = 67.5 bits (166), Expect = 2e-13
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 10 GWTPLHDAVSIGN-ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
PLH A V LL +L+ D PLH + + L+ +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 69 VDKRNIQ---GHKPL 80
V+ + G P
Sbjct: 62 VNLDDYPDDSGWTPF 76
Score = 62.9 bits (154), Expect = 1e-11
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEA-GALVNVPGLDNDTPLHLAARDVRPALAKLL 62
N +D GWTPL A++ G+ LL+E GA ++ +A + + K
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFF 224
Query: 63 I 63
+
Sbjct: 225 L 225
Score = 39.7 bits (94), Expect = 6e-04
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLE 31
++ DN G A+ NE V + L
Sbjct: 200 EYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 84.1 bits (208), Expect = 4e-19
Identities = 28/81 (34%), Positives = 36/81 (44%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
D T LH A S G+ +V LL+ G VN +PLH+AA + K
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ GA V+ N G PL Y
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHY 112
Score = 79.5 bits (196), Expect = 2e-17
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N KD+AGW+PLH A S G + +V+ LL GA VN + TPLH AA R +A +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L++ GA+ D ++ +
Sbjct: 125 LLEGGANPDAKDHYDATAMHR 145
Score = 75.3 bits (185), Expect = 5e-16
Identities = 16/75 (21%), Positives = 29/75 (38%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY 65
+ + A S + + +L +L D+ T LH A + + L+Q
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 66 GADVDKRNIQGHKPL 80
G V+ ++ G PL
Sbjct: 63 GVPVNDKDDAGWSPL 77
Score = 69.5 bits (170), Expect = 6e-14
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
NP+ KD+ T +H A + GN +V +LL A N+ + +TPLHLA + R AK
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ GA + N + PL+
Sbjct: 191 LVTQGASIYIENKEEKTPLQV 211
Score = 68.0 bits (166), Expect = 2e-13
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N + G TPLH A S + +LLE GA + + T +H AA + +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ Y A + ++ +G+ PL
Sbjct: 158 LLFYKASTNIQDTEGNTPLHL 178
Score = 62.6 bits (152), Expect = 2e-11
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N++D G TPLH A + L+ GA + + + TPL +A + L
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG--LILK 221
Query: 62 LIQYGADVD 70
+ G +
Sbjct: 222 RLAEGEEAS 230
Score = 38.7 bits (90), Expect = 0.001
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNV 38
+ +++ TPL A G ++ L G ++
Sbjct: 197 SIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 82.0 bits (203), Expect = 9e-19
Identities = 7/79 (8%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVR-------LLLEAGALVNVPGLDNDTPLHLAARDV 54
+ + + + ++G + + T L R
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Query: 55 RPALAKLLIQYGADVDKRN 73
+P K++ Y + +
Sbjct: 166 KPIALKMMEDYIKKYNLKE 184
Score = 80.1 bits (198), Expect = 5e-18
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESV------VRLLLEAGALVNVPGLDNDTPLHLAAR--- 52
+ + G T G + ++ LE GA + +
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126
Query: 53 ----DVRPALAKLLIQYGADVDKRNIQGHKPLEY 82
++ P + Q G + ++ G LE+
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 75.9 bits (187), Expect = 1e-16
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR------DVRPA 57
+K N + L + + L+ GA + + T +
Sbjct: 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95
Query: 58 LAKLLIQYGADVDKRNIQGHKPL 80
L K+ ++ GAD+ +
Sbjct: 96 LCKIFLEKGADITALYKPYKIVV 118
Score = 68.2 bits (167), Expect = 6e-14
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 10 GWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLA----ARDVRPALAKLLIQY 65
+ + A +G L E G L+ + R ++ LI
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESV-LKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 66 GADVDKRNIQGHKPL 80
GAD+ R +G
Sbjct: 65 GADIKSRTKEGTTLF 79
Score = 32.7 bits (75), Expect = 0.085
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 41 LDNDTPLHLAARDVRPALAKLLIQYGADVDKRNIQ---GHKPLEYLDVISRDDI 91
+ + AA L + G + + ++ + L + +R I
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKI 57
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 80.7 bits (200), Expect = 6e-18
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVN-------------VPGLDNDTPLH 48
+ G T LH AV N ++VR LL GA V+ + PL
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 49 LAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
AA + +LLI++GAD+ ++ G+ L
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 80.3 bits (199), Expect = 8e-18
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVR----LLLEAGALVN----VPGLDND--TPLHLAA 51
+ +D+ G T LH + N++ LLL + +N TP LA
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Query: 52 RDVRPALAKLLIQYGADVDKRNIQGH 77
+ + + L+Q + + H
Sbjct: 206 VEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 80.3 bits (199), Expect = 8e-18
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 19/123 (15%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGL---DND--TPLHLAARDVRP 56
+ + G T LH A N +L+EA + + + T LH+A +
Sbjct: 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88
Query: 57 ALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCI 116
L + L+ GA V R ++ LS AA
Sbjct: 89 NLVRALLARGASVSARATGSVFHY------RPHNLIYYGEHPLSF----AA----CVGSE 134
Query: 117 DIV 119
+IV
Sbjct: 135 EIV 137
Score = 70.7 bits (174), Expect = 2e-14
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 2 NPNVKDN-------------AGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLH 48
+ + + G PL A +G+E +VRLL+E GA + +T LH
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Query: 49 LAAR----DVRPALAKLLIQYGADVDKRNIQ 75
+ + LL+ Y ++++
Sbjct: 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190
Score = 65.7 bits (161), Expect = 1e-12
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 10 GWTPLHDAVSIGN-ESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGAD 68
+PL A + +++ +LL G V+ G +T LH+AA A +L++ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 69 V-----DKRNIQGHKPL 80
+ +G L
Sbjct: 63 LVFEPMTSELYEGQTAL 79
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 82.7 bits (205), Expect = 8e-18
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ N D TPL AV +V L++AGA + + LH AA + +
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217
Query: 62 LIQ---YGADVDKRNIQGHKPL 80
++ D+++ + G L
Sbjct: 218 MLNSTKLKGDIEELDRNGMTAL 239
Score = 81.5 bits (202), Expect = 2e-17
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + +D G TP+ A G VV L++ GA V + T LA + + +
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364
Query: 62 LIQYGADVD 70
+ + +
Sbjct: 365 FDRCRPERE 373
Score = 80.0 bits (198), Expect = 6e-17
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLL-EAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+ + G T LH A + N +V+ L+ E G+ + D TP+ LAA++ R +
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
LIQ GA V+ + H +
Sbjct: 331 YLIQQGASVEAVDATDHTARQL 352
Score = 77.3 bits (191), Expect = 5e-16
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNE---SVVRLLLEAGALVNVPGL------DND--TPLHLA 50
+ D G T L + +LL+E GA V+ G T LH A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 51 ARDVRPALAKLLI-QYGADVDKRNIQGHKPL 80
A+ + K L+ + G++ DK++ G P+
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317
Score = 75.0 bits (185), Expect = 3e-15
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLE---AGALVNVPGLDNDTPLHLAARD---VR 55
+P + + + + LH A + + ++ +L + + T L + A + +
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250
Query: 56 PALAKLLIQYGADVDKRN 73
A AKLL++ GA VD
Sbjct: 251 VASAKLLVEKGAKVDYDG 268
Score = 73.4 bits (181), Expect = 9e-15
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 22/110 (20%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLLL--------EAGALVNVPGLDNDTPLHLAARDVRPA 57
T LH S + L+ AGA VN D +TPL LA R
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180
Query: 58 LAKLLIQYGADVDKRNIQGHKPL------------EYLDVISRDDIKTDI 95
L L++ GAD N L Y+ ++ +K DI
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM--LNSTKLKGDI 228
Score = 70.4 bits (173), Expect = 1e-13
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N + P GN+ + + P ++ LH A A+ +
Sbjct: 53 QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAG-SYAITEP 111
Query: 62 LIQYGADVDKRN 73
+ + ++
Sbjct: 112 ITRESVNIIDPR 123
Score = 55.7 bits (135), Expect = 6e-09
Identities = 12/110 (10%), Positives = 22/110 (20%), Gaps = 25/110 (22%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
+ + L +A G R L+ + P + L
Sbjct: 31 HQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLYPNPQGYGNGNDFLGDFNH 81
Query: 64 QYGADVDKRNIQGHKPL-----------EYLDVISRD-DIKTDI--LTAL 99
+ + L E + +I T L
Sbjct: 82 TNLQIPTEPEPESPIKLHTEAAGSYAITEPI--TRESVNIIDPRHNRTVL 129
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A
{Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Length = 229
Score = 78.7 bits (193), Expect = 4e-17
Identities = 36/230 (15%), Positives = 80/230 (34%), Gaps = 26/230 (11%)
Query: 117 DIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCN 176
DI + L + + +F + ++ ++ +++ E C T
Sbjct: 7 DISMVVSGLTPKEVMIVQKFAEKY--RL----ALTDVITEETTHVIIKTDAEFVCERTLK 60
Query: 177 VLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGL 236
I G V Y+W+ +S++ K+L V EFE+ G + H+ L
Sbjct: 61 YFLGIAGGKWIVSYSWVIKSIQERKLLSVHEFEVKG---DVVTGSNHQGPRRSRESQEKL 117
Query: 237 FNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQH 296
F GLQ+Y +P + + +++ + + GA+++ P + V+ +
Sbjct: 118 FEGLQIYCCEP---FTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWT- 173
Query: 297 RLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSPY 346
E+ + + + + WV + + + Y
Sbjct: 174 ------------EDNDCPDIGQLCKGRLVMWDWVLDSISVYRC-RDLDAY 210
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide
complex, antitumor protein; HET: SEP; 1.85A {Homo
sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A*
1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A
3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A
2ing_X 1oqa_A
Length = 214
Score = 77.1 bits (189), Expect = 8e-17
Identities = 32/230 (13%), Positives = 75/230 (32%), Gaps = 25/230 (10%)
Query: 117 DIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCN 176
+ + L + + +F + ++ L+ +++ E C T
Sbjct: 4 RMSMVVSGLTPEEFMLVYKFARKH--HI----TLTNLITEETTHVVMKTDAEFVCERTLK 57
Query: 177 VLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGL 236
I G V Y W+++S++ K+L +FE+ G V + ++ +
Sbjct: 58 YFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQD--RKI 115
Query: 237 FNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQH 296
F GL++ P + + ++ + + + GA+++ V+ +
Sbjct: 116 FRGLEICCYGP---FTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWT- 171
Query: 297 RLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSPY 346
E+ + M + WV V ++ Q Y
Sbjct: 172 ------------EDNGFHAIGQMCEAPVVTREWVLDSVALYQ-CQELDTY 208
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 74.8 bits (184), Expect = 1e-15
Identities = 12/74 (16%), Positives = 26/74 (35%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
++ + L + G + L L + TPL LAA++ + + + ++
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
Query: 64 QYGADVDKRNIQGH 77
Q + H
Sbjct: 242 QREFSGAAAHHHHH 255
Score = 74.1 bits (182), Expect = 2e-15
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVN-------------VPGLDNDTPLH 48
+ G + LH A+ + V+LL+E GA V+ + PL
Sbjct: 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141
Query: 49 LAARDVRPALAKLLIQYG---ADVDKRNIQGHKPLEYLDVISRDD 90
LAA + + L++ A ++ + G+ L L +I+ +
Sbjct: 142 LAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186
Score = 67.1 bits (164), Expect = 4e-13
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 2 NPNVKDNAGWTPLHDAV---SIGNESVVRLLLEAGALVNVPGLDND-----------TPL 47
+ + + G T L AV G + + LL+ P + + L
Sbjct: 35 SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL 94
Query: 48 HLAARDVRPALAKLLIQYGADVDKRNIQGHKPLE 81
H+A KLL++ GADV R
Sbjct: 95 HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH 128
Score = 61.7 bits (150), Expect = 3e-11
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 17/79 (21%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ D+ G T LH V I + S ++ L + D +
Sbjct: 164 SLEATDSLGNTVLHALVMIADNS-----------------PENSALVIHMYDGLLQMGAR 206
Query: 62 LIQYGADVDKRNIQGHKPL 80
L + N QG PL
Sbjct: 207 LCPTVQLEEISNHQGLTPL 225
Score = 48.6 bits (116), Expect = 8e-07
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLH 48
+ ++ G TPL A G + R +L+ H
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREF-------SGAAAHH 252
Score = 43.6 bits (103), Expect = 4e-05
Identities = 20/91 (21%), Positives = 23/91 (25%), Gaps = 22/91 (24%)
Query: 12 TPLHDAVSIGNESVVRLLLE--------AGALVNVPGLDNDTPLHLAA---RDVRPALAK 60
L VS G + LLE G T L A +D A
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 61 LLIQYG-----------ADVDKRNIQGHKPL 80
L+Q A QGH L
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL 94
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 74.0 bits (182), Expect = 3e-15
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDND----------------T 45
+ G T LH A+ N ++V LL+E GA V N
Sbjct: 93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA--ANGDFFKKTKGRPGFYFGEL 150
Query: 46 PLHLAARDVRPALAKLLIQYG---ADVDKRNIQGHKPL 80
PL LAA + A+ K L+Q AD+ R+ G+ L
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Score = 72.9 bits (179), Expect = 6e-15
Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 2 NPNVKDNA-GWTPLHDAVSI---GNESVVRLLLEAGA-------LVNVPGLDND----TP 46
+ KD G T L A+ G + LLL+ VN D+ T
Sbjct: 45 DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTA 104
Query: 47 LHLAARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
LH+A L LL++ GADV
Sbjct: 105 LHIAIERRNMTLVTLLVENGADVQAAANGDFFKK 138
Score = 68.7 bits (168), Expect = 2e-13
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVR---------LLLEAGALVNVPGLDND-------T 45
+ + +D+ G T LH V + + +V +L GA ++ + T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235
Query: 46 PLHLAARDVRPALAKLLIQYGADV 69
PL LAA + + ++Q
Sbjct: 236 PLALAASSGKIGVLAYILQREIHE 259
Score = 60.6 bits (147), Expect = 1e-10
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAG---ALVNVPGLDNDTPLHLAAR------ 52
G PL A ++V+ LL+ A ++ +T LH
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199
Query: 53 ----------DVRPALAKLLIQYGADVDKRNIQGHKPL 80
+ L L + N +G PL
Sbjct: 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237
Score = 59.8 bits (145), Expect = 2e-10
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAAR 52
+ + G TPL A S G V+ +L+ H AA
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAH 268
Score = 51.3 bits (123), Expect = 1e-07
Identities = 12/80 (15%), Positives = 19/80 (23%), Gaps = 11/80 (13%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEA-------GALVNVPGLDN-DTPLHLA--- 50
+ DAV+ N + LL + T L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 51 ARDVRPALAKLLIQYGADVD 70
+ + LL+ D
Sbjct: 65 LHNGQNDTIALLLDVARKTD 84
Score = 29.4 bits (66), Expect = 1.4
Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 32 AGALVNVPGLDNDTPLHLAARDVRPALAKLLIQY-------GADVD-KRNIQGHKPLEYL 83
A P L + + A + L+ + D + K G L
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 84 DVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQT-------SGLAQF 136
+++ + + D + L L A Y D K QT
Sbjct: 62 -MLNLHNGQNDTIALL----LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116
Query: 137 VKTL-SSGADV 146
V L +GADV
Sbjct: 117 VTLLVENGADV 127
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 73.7 bits (181), Expect = 3e-15
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVN--------------VPGLDNDTPL 47
G T LH A+ + V LL+E GA V+ + PL
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Query: 48 HLAARDVRPALAKLLIQYG---ADVDKRNIQGHKPLEYLDVISRDDIK 92
LAA +P + L + G AD+ +++ +G+ L + V D+ +
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL-HALVAIADNTR 191
Score = 71.0 bits (174), Expect = 3e-14
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNES---------VVRLLLEAGALVNVPG-----LDND--T 45
+ +D+ G T LH V+I + + + LLL A + L+ND +
Sbjct: 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227
Query: 46 PLHLAARDVRPALAKLLIQYGA-DVDKRNIQGH 77
PL +AA+ + + + +I+ D + H
Sbjct: 228 PLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260
Score = 67.9 bits (166), Expect = 3e-13
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 31/136 (22%)
Query: 2 NPNVKD----NAGWTPLHDAV---SIGNESVVRLLLEAGA-------LVNVPGLDND--- 44
++ + G T L A+ S G + +LL+ +N P D
Sbjct: 34 RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRG 93
Query: 45 -TPLHLAARDVRPALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPR 103
T LH+A +LL++ GADV + + LSL
Sbjct: 94 QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPK-----DEGGYFYFGELPLSL-- 146
Query: 104 LSAAPPPSLPNCIDIV 119
AA N IV
Sbjct: 147 --AA----CTNQPHIV 156
Score = 47.5 bits (113), Expect = 2e-06
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 11/73 (15%)
Query: 12 TPLHDAVSIGN----ESVVRLLLEAGALVNVPGLDND----TPLHLAA---RDVRPALAK 60
L D VS G+ E ++ LL + T L A R
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 61 LLIQYGADVDKRN 73
+L+
Sbjct: 67 ILLDIAEKTGNMR 79
Score = 30.1 bits (68), Expect = 0.95
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 21/120 (17%)
Query: 43 NDTPLHLAAR----DVRPALAKLLIQYGADVDKRNIQGHK----PLEYLDVISRDDIKTD 94
N L D L L+ + + + L +++ + D
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA-LLNLSAGRND 63
Query: 95 ILTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQT-------SGLAQFVKTL-SSGADV 146
+ L L A + D + QT +V+ L GADV
Sbjct: 64 TIPIL----LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 70.4 bits (172), Expect = 4e-14
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNES---VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPA 57
+ T LH AV + + +V L++ ++ T LH
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219
Query: 58 LAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALS 100
KLL++ A ++ N G PL+ + + + + ALS
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 68.9 bits (168), Expect = 2e-13
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAA 51
N +D+ G T L+ A +GN S+V LL+ GA + P+ A
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 67.7 bits (165), Expect = 6e-13
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 2 NPNVK-DNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARD----VRP 56
N N+ D G TPLH SI N +V+ L++ G+ ++ L A +
Sbjct: 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181
Query: 57 ALAKLLIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDI 95
LL + + L ++ + S +
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA 220
Score = 67.0 bits (163), Expect = 1e-12
Identities = 16/81 (19%), Positives = 33/81 (40%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + + + + L ++N + DT L++AAR ++
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301
Query: 62 LIQYGADVDKRNIQGHKPLEY 82
L+ YGAD N G +P+++
Sbjct: 302 LLDYGADPFIANKSGLRPVDF 322
Score = 40.4 bits (94), Expect = 6e-04
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARD-VRPALAK 60
N N + L + + + L + N G ++ + D + +
Sbjct: 55 NDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVND 114
Query: 61 LLIQYGADVD-KRNIQGHKPL 80
+++ + G+ PL
Sbjct: 115 AFPNTQLNLNIPVDEHGNTPL 135
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 67.3 bits (164), Expect = 7e-13
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 10 GWTPLHDAVSIGNES---VVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYG 66
LH AV + N++ +V +++ G ++ D +T LH AA +P KLL++
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 67 ADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSL 101
A V N G L+ I+R + L
Sbjct: 250 ALVGTVNEAGETALD----IARKKHHKECEELLEQ 280
Score = 56.5 bits (136), Expect = 3e-09
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + K G T LH A ++LLL+ ALV +T L +A + +L
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 62 LIQYGADVDKRNIQGH 77
L Q A H
Sbjct: 278 LEQ--AQAGTFAFPLH 291
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 66.1 bits (161), Expect = 3e-12
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 10/82 (12%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNV--PGLDNDTPLHLAAR----DVR 55
V + A G+ V+ L E + +N LAA V
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV- 178
Query: 56 PALAKLLIQYGADVDKRNIQGH 77
L + IQ
Sbjct: 179 ---LNRLCELAPTEATAMIQAE 197
Score = 60.0 bits (145), Expect = 3e-10
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
L A+ +GN+ LLL +++ L ++ R L
Sbjct: 310 APTATIPGDANELLRLALRLGNQGACALLLSIPSVLA---LTKANNYYINETGGRLDLRA 366
Query: 61 LLIQYGADV 69
+ +++
Sbjct: 367 VALEHHHHH 375
Score = 57.3 bits (138), Expect = 2e-09
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 4 NVKDNAGWTPLHDAVSIGNES---VVRLLLEAGALVNVPGLDNDTPLHLAAR----DVRP 56
+ K A G S + LLL + +V V +N LAA V
Sbjct: 86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV-- 143
Query: 57 ALAKLLIQYGADVDKRNIQ--GHKPL 80
L + IQ +
Sbjct: 144 --LNRLCELAPTEIMAMIQAENYHAF 167
Score = 52.6 bits (126), Expect = 6e-08
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 16/91 (17%)
Query: 6 KDNAGWTPLHDAVSIGNESVVRLL--------LEAGALVNVPGLDNDTPLHLAARDVRPA 57
+ G+ L + + +E ++ + ++A A D + L LA R
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333
Query: 58 LAKLLIQYGADVDKRN--------IQGHKPL 80
LL+ + + G L
Sbjct: 334 ACALLLSIPSVLALTKANNYYINETGGRLDL 364
Score = 38.0 bits (88), Expect = 0.004
Identities = 8/98 (8%), Positives = 29/98 (29%), Gaps = 10/98 (10%)
Query: 4 NVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLI 63
++ + AV G+ +V+ LL+ ++ + +
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV-------NPFIA 245
Query: 64 QYGADVDKRNIQGHKPLE--YLDVISRDDIKTDILTAL 99
++ + + + D++++ + L
Sbjct: 246 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECL-QGFYML 282
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 65.6 bits (159), Expect = 5e-12
Identities = 25/82 (30%), Positives = 34/82 (41%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAK 60
+N TPL A + + LL+ GA VN PLH A LA
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285
Query: 61 LLIQYGADVDKRNIQGHKPLEY 82
L ++ GAD+ R+ +G PL
Sbjct: 286 LFLKRGADLGARDSEGRDPLTI 307
Score = 48.6 bits (115), Expect = 1e-06
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 9 AGWTPLHDAVSIGNESVVRLLLEAGALVN--VPGLDNDTPLHLAARDVRPALAKLLIQYG 66
G + + + L GA VN G DN TPL A + L+Q G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 67 ADVDKRNIQGHKPLEYLDVISRDDI---------KTDILTALSLPRLSAAPPPSLPNCID 117
A+V++ + G PL + ++ + + L+ A + + +
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 118 IVIYADQLDKTQTSGLA 134
++ A + G A
Sbjct: 319 LLRLAKMREAEAAQGQA 335
Score = 44.8 bits (105), Expect = 2e-05
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
N N D+AG PLH A +G+ + L L+ GA + + PL +A + L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 62 LIQ 64
L
Sbjct: 320 LRL 322
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat,
phosphoserine binding domain, DNA repair, cell division,
mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe}
PDB: 3l40_A*
Length = 220
Score = 61.9 bits (150), Expect = 2e-11
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 19/175 (10%)
Query: 170 TCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEI-----LGTVDYPLAKPFHR 224
+ T L +I G V WI+ L+ +++ E + + + L R
Sbjct: 46 RILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCTLESALKR 105
Query: 225 SRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSE 284
+R P L VYLT T +P + + I K G + +
Sbjct: 106 ARAQG----PSLLEDYVVYLTS--KTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHL 159
Query: 285 SSVMYHVNRPQHRLYNLSQAIVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEI 339
+ + + + + + L N + W+ V + EI
Sbjct: 160 EDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYD--------WLIKTVLRQEI 206
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET:
SEP; 2.15A {Homo sapiens}
Length = 219
Score = 61.1 bits (148), Expect = 4e-11
Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 35/199 (17%)
Query: 125 LDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSG 184
+ Q + + L G +V L+ + T L AI
Sbjct: 24 FEPVQVQQYIKKLYIL--GGEV-----AESAQKCTHLIAS-----KVTRTVKFLTAISVV 71
Query: 185 IKAVDYTWISRSLEIGKVLPVEEFEILG-----TVDYPLAKPFHRSRENKENLLPGLFNG 239
V W+ K + + + + + L + R+ + LF
Sbjct: 72 KHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSP------LFKA 125
Query: 240 LQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHV-------- 291
Y+T P P S M+ I + G +L+++P + + +
Sbjct: 126 KYFYIT---PGICP-SLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCEN 181
Query: 292 NRPQHRLYNLSQAIVYSEE 310
+ R Y V++ E
Sbjct: 182 DLHLCREYFARGIDVHNAE 200
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 61.1 bits (148), Expect = 2e-10
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 1 MNPNVKDNAGWTPLHDAVSI---GNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPA 57
+ LH AV + + +V +++ G ++ D +T LH AA +P
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPD 221
Query: 58 LAKLLIQYGADVDKRNIQGHKPLE 81
KLL++ A V N G L+
Sbjct: 222 CLKLLLKGRALVGTVNEAGETALD 245
Score = 50.7 bits (121), Expect = 4e-07
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 18/129 (13%)
Query: 14 LHDAVSIGNESVVRLLLEAGALVNVPGLDND------TPLHLAARDVRP---ALAKLLIQ 64
L A+ + V G P D LHLA + L +IQ
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 65 YGADVDKRNIQGHKPLEY---------LDVISRDDIKTDILTALSLPRLSAAPPPSLPNC 115
G +D + G+ L Y L ++ + + L A C
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 116 IDIVIYADQ 124
+++ A
Sbjct: 256 EELLEQAQA 264
Score = 49.5 bits (118), Expect = 9e-07
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 13/157 (8%)
Query: 2 NPNVKDNAGWTPLHDAVSIGNESVVRLLLEAGALVNVPGLDNDTPLHLAARDVRPALAKL 61
+ + K G T LH A ++LLL+ ALV +T L +A + +L
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 258
Query: 62 LIQYGADVDKRNIQGHKPLEYLDVISRDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIY 121
L Q A H ++Y VIS +++ +D + S + P +L +
Sbjct: 259 LEQ--AQAGTFAFPLH--VDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPG 314
Query: 122 ADQLDKTQT---------SGLAQFVKTLSSGADVPII 149
+ L + +G + L G V I
Sbjct: 315 IEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI 351
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein
binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo
sapiens} PDB: 3al3_A*
Length = 235
Score = 58.6 bits (141), Expect = 3e-10
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 30/172 (17%)
Query: 162 LVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKP 221
+V G P R L ++ +G + +++ G + E++E + +
Sbjct: 49 IVVGHPLRNE----KYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTG 104
Query: 222 FH----------------RSRENKENLLPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKR 265
+ + + ++ G F+G +V L + + +
Sbjct: 105 INVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVIL-----HVDQSREAGFKRLLQS 159
Query: 266 GGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAI-----VYSEEAL 312
GGA +L P + + +P N+++A E +
Sbjct: 160 GGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYI 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 6e-08
Identities = 51/389 (13%), Positives = 105/389 (26%), Gaps = 136/389 (34%)
Query: 11 WTPLHDAVSIGNESVVRLLLEAGALVN---------VPGLDNDTPLHLAARDVRPALAKL 61
W +++ N + +LE L D+ + + L ++ L +L
Sbjct: 186 W------LNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 62 LI--QYGAD-VDKRNIQGHKPLEYLD------VISRDDIKTDILTALSLPRLSAAPPPSL 112
L Y + N+Q K + + +R TD L+A + +S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS------- 290
Query: 113 PNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCI 172
+ ++ L + L +K L L P
Sbjct: 291 -----LDHHSMTLTPDEVKSL--LLKYLD------CRPQDL-------------PREVL- 323
Query: 173 ATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENK-EN 231
T N LS I ++ + ++ + E+
Sbjct: 324 -TTNPR--RLSIIAESIRDGLATW---------DNWK------HVNCDKLTTIIESSLNV 365
Query: 232 LLPG----LFNGLQVY----------LTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDP 277
L P +F+ L V+ L+ W + + + +L+ ++P
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKE 423
Query: 278 ESMNLSESSVMYHVNRPQ----HRL----YNLSQA------------------IVY---- 307
++++ + V HR YN+ + I +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 308 ---SEE-ALPRRLYNMEHVKALGLSWVRA 332
E L R ++ L ++
Sbjct: 484 IEHPERMTLFRMVF-------LDFRFLEQ 505
Score = 48.7 bits (115), Expect = 2e-06
Identities = 40/307 (13%), Positives = 83/307 (27%), Gaps = 85/307 (27%)
Query: 68 DVDKRNIQGHKPLEYLDVIS--RDDIKTDILTALSLPRLSAAPPPSLPNCIDIVIYADQL 125
D + Q +Y D++S D + +C D+
Sbjct: 8 DFETGEHQ----YQYKDILSVFEDAFVDNF------------------DCKDV------Q 39
Query: 126 DKTQTSGLAQFVKTLSSGADVPIIV---STLLQSN--VNILLVNGTPERTCIATCNVLRA 180
D K++ S ++ I+ + + LL +++
Sbjct: 40 D---------MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---------EMVQK 81
Query: 181 ILSGIKAVDYTWISRSLE---IGKVLPVEEF----EILGTVDYPLAKPFHRSRENK-ENL 232
+ + ++Y ++ ++ + + + L D + ++ SR L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKL 140
Query: 233 LPGLFNGLQV--YLT--------KPWPTSSPLSSEDMRDIFKRGGATL-LNREPDPESM- 280
L L+ + K W S ++ L L PE++
Sbjct: 141 RQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 281 ----NLSESSVMYHVNRPQHRLYNLSQAIVYSEEALPRRLYNMEHVKALGLS----WVRA 332
L +R H N+ I + L R L + + L L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAK 257
Query: 333 CVEQFEI 339
F +
Sbjct: 258 AWNAFNL 264
Score = 36.8 bits (84), Expect = 0.013
Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 47/182 (25%)
Query: 185 IKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLF-----NG 239
+ D + + +L EE + + + + L
Sbjct: 30 VDNFDCKDVQDMPK--SILSKEEIDHI------IMSK---DAVSGTLRLFWTLLSKQEEM 78
Query: 240 LQVYLTK------PWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNR 293
+Q ++ + + SP+ +E R + + D N ++ Y+V+R
Sbjct: 79 VQKFVEEVLRINYKF-LMSPIKTEQ-RQ--PSMMTRMYIEQRDR-LYNDNQVFAKYNVSR 133
Query: 294 PQH------RLYNLSQA--IVYSEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSP 345
Q L L A ++ + + G +WV V VQ K
Sbjct: 134 LQPYLKLRQALLELRPAKNVL---------IDGV---LGSGKTWVALDVCLSYKVQCKMD 181
Query: 346 YE 347
++
Sbjct: 182 FK 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 5e-04
Identities = 52/281 (18%), Positives = 77/281 (27%), Gaps = 95/281 (33%)
Query: 16 DAVSIGNESVVR-LLLEAGAL---VNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVDK 71
DA S R L L G+L + VP T A ++ K+L
Sbjct: 2 DAYS------TRPLTLSHGSLEHVLLVP-----TASFFIASQLQEQFNKIL--------- 41
Query: 72 RNIQGHKPLEYLDVISRDDIKTDI-LTALSLPRLSAAPPPSLPNCIDIVIYADQLDKTQT 130
+P E + D+ T L L +S+ PS D V+
Sbjct: 42 -----PEPTE--GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL---------N 85
Query: 131 SGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDY 190
L +F G D+ + + LLQ N + T + T +++ Y
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQEN----------DTTLVKTKELIKN---------Y 126
Query: 191 TWISRSLEIGKVLPVEEFEILGTVDYPLAKP-----FHRSRENKENLLPGLFNGLQ---- 241
P K F E L+ +F G Q
Sbjct: 127 -----------------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGG-QGNTD 167
Query: 242 VY---LTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES 279
Y L + T L + D+ K TL
Sbjct: 168 DYFEELRDLYQTYHVL----VGDLIKFSAETLSELIRTTLD 204
Score = 40.8 bits (95), Expect = 7e-04
Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 69/197 (35%)
Query: 13 PLHDAVSIGNESVVRLLLEAGALVN------VPGLDNDTPLHLAARDVRPALAKLLIQYG 66
P V I +LVN V G P L + L K G
Sbjct: 361 PAGKQVEI-------------SLVNGAKNLVVSG----PPQSLYG--LNLTLRKAKAPSG 401
Query: 67 ADVDK-----RNIQG-----------HKPL--EYLDVISRDDIKTDIL---TALSLP--- 102
D + R ++ H L D+I++D +K ++ + +P
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 103 -------R-LSAAPPPSLPNCIDIV-IY---ADQLDKT--------QTSGLAQFVKTLSS 142
R LS + + +CI + + Q T SGL
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 143 GADVPIIVSTLLQSNVN 159
G V +IV+ L N +
Sbjct: 522 GTGVRVIVAGTLDINPD 538
Score = 40.4 bits (94), Expect = 7e-04
Identities = 45/234 (19%), Positives = 71/234 (30%), Gaps = 88/234 (37%)
Query: 106 AAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLS-SGADVPIIVSTLLQSN------- 157
A P SLP I+ + + ++ S + LS S + + ++N
Sbjct: 313 AYPNTSLP--PSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 158 -VNILLVNGT-------PERTCIATCNVLRAILSGIKAVDYTWISR---SLEIGKVLPVE 206
V I LVNG P ++ LR KA SR S K+
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLR----KAKAPSGLDQSRIPFSER--KLKFSN 418
Query: 207 EFEILGTVDYPLAKPFHRS--------------------------------------REN 228
F L P+A PFH R
Sbjct: 419 RF--L-----PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 229 KENLLPGLFNGLQVYLTKP--WPTSSPLSSEDMRDIFKRGGAT----LLNREPD 276
++ + + + + P W T++ + + D F GGA+ L +R D
Sbjct: 472 SGSISERIVDCI---IRLPVKWETTTQFKATHILD-FGPGGASGLGVLTHRNKD 521
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
cell cycle checkpoints, acetylation, cytoplasm,
cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens}
PDB: 3pd7_A* 3jve_A*
Length = 107
Score = 34.1 bits (78), Expect = 0.014
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 11/109 (10%)
Query: 103 RLSAAPPPSLPNCI--DIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNI 160
+ A +V+ + + S L +L GAD V
Sbjct: 2 HMEAQSEKEEAPKPLHKVVVCVSKKLSKKQSELNGIAASL--GADY----RRSFDETVTH 55
Query: 161 LLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFE 209
+ G P T G+ V W+ + K LP +
Sbjct: 56 FIYQGRPNDT---NREYKSVKERGVHIVSEHWLLDCAQECKHLPESLYP 101
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Length = 264
Score = 33.7 bits (76), Expect = 0.071
Identities = 20/214 (9%), Positives = 54/214 (25%), Gaps = 47/214 (21%)
Query: 164 NGTPERTCIA---TCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDYPLAK 220
+ + I+ T I G + W+ + +++ +E A
Sbjct: 51 HSIGDVRLISCKTTTECKALIDRGYDILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAV 110
Query: 221 PFHR---------------------------------SRENKENLLPG-LFNGLQVYLTK 246
R +++ P LF+ Y+
Sbjct: 111 AEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYV-- 168
Query: 247 PWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLYNLSQAIV 306
+ + K G + +++ + ++ P R +++
Sbjct: 169 -PRRKISTEDDIIEMKIKLFGGKITDQQSL-------CNLIIIPYTDPILRKDCMNEVHE 220
Query: 307 YSEEALPRRLYNMEHVKALGLSWVRACVEQFEIV 340
+E + + + + WV + + V
Sbjct: 221 KIKEQIKASDTIPKIARVVAPEWVDHSINENCQV 254
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III,
poly(ADP-ribose) polymerase-1, DNA polymerase beta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 129
Score = 31.8 bits (72), Expect = 0.12
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 12/109 (11%)
Query: 102 PRLSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNIL 161
R A P +V+ S L L GA + + +++
Sbjct: 10 RRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALEL--GA---KYRPDWTRDSTHLI 64
Query: 162 LVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEI 210
+ + + G + V W+ + + LP + + +
Sbjct: 65 CAFANTPK-------YSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRYLM 106
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA
replication inhibitor, phosphoprotein, checkpoint
signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe}
PDB: 2vxc_A*
Length = 241
Score = 32.2 bits (72), Expect = 0.17
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 9/115 (7%)
Query: 174 TCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEF-------EILGTVDYPLAKPFHRSR 226
L A+ I V +I + L++ +V+ + L +PF +
Sbjct: 80 KVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTD 139
Query: 227 ENKENL--LPGLFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPES 279
+ L G G ++ P S E+ K +
Sbjct: 140 SLYDRLLARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADV 194
Score = 30.7 bits (68), Expect = 0.55
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 236 LFNGLQVYLTKPWPTSSPLSSEDMRDIFKRGGATLLNREPDPESMNLSESSVMYHVNRPQ 295
+F+ + P + S + GG L + +PQ
Sbjct: 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQ 61
Query: 296 HRLYNLSQAIVYSEEALPRRLYNMEHVKALGL-----SWVRACVEQFEIVQPKSPY 346
R + +QA V S+ R A + +++ C++ +V PY
Sbjct: 62 KRSKSWNQAFVVSDT--FSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFS-PY 114
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing,
coiled coil, DNA damage, DNA recombination, isopeptide
bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB:
2e2w_A*
Length = 263
Score = 31.4 bits (70), Expect = 0.33
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 150 VSTLLQSNVNILLVNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFE 209
V + L V+ +++ R R K + +W++ S++ ++ ++
Sbjct: 204 VVSCLAEGVSHVIIGEDHSRV-ADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYL 262
Query: 210 I 210
I
Sbjct: 263 I 263
Score = 27.6 bits (60), Expect = 5.3
Identities = 27/219 (12%), Positives = 58/219 (26%), Gaps = 37/219 (16%)
Query: 164 NGTPERTCIATCN----VLRAILSG-IKAVDYTWISRSLEIGKVLPVEEFEILGTVD--- 215
N P+ C+ + V ILS V W+ + +P + ++
Sbjct: 44 NPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTK 103
Query: 216 ------YPLAKPFHRSRENKENLLPGLFNGLQVYLTKPWPTSSPL-------SSEDMRDI 262
Y + + L P +S + S +
Sbjct: 104 EHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLS 163
Query: 263 FKRGGATLLNREPDPESMNLSESSVMYHVNRPQHRLY------NLSQAIVY--------- 307
R L+ ++ + + R + L++ + +
Sbjct: 164 MFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSR 223
Query: 308 SEEALPRRLYNMEHVKALGLSWVRACVEQFEIVQPKSPY 346
+ R K L SWV +++ E+ ++ Y
Sbjct: 224 VADFKAFRRTFKRKFKILKESWVTDSIDKCELQ-EENQY 261
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.75
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 303 QAIVYSEEALPRRLYNMEHVKALGLSWVRACVE 335
QA+ + +L +LY + AL ++A +E
Sbjct: 20 QALKKLQASL--KLYADDSAPALA---IKATME 47
Score = 29.5 bits (65), Expect = 0.83
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 44 DTPLHLAARDVRPALAKLLIQYGADVD 70
L L A D PALA I+ A ++
Sbjct: 26 QASLKLYADDSAPALA---IK--ATME 47
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen
III synthase, HMB, lyase; 2.50A {Pseudomonas syringae
PV}
Length = 269
Score = 30.4 bits (69), Expect = 0.79
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 29 LLEAGALVNVPGLDNDTPLHLAARDVRPALAKLLIQYGADVD-----KRNIQGHKPLEYL 83
LL+ L + L + + R LA+ L + G VD +R + H P L
Sbjct: 127 LLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLL 186
Query: 84 DVISRDDIKTDILTALS------LPRLSAAPPPSLPNCIDIVI 120
+ + + + L S L +L+ P L V
Sbjct: 187 QRVEVERL--NGLVVSSGQGFEHLLQLAGDSWPDLAGLPLFVP 227
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET:
SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A*
3sht_A 3shv_A*
Length = 199
Score = 29.3 bits (65), Expect = 1.3
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 163 VNGTPERTCIATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEI 210
V+ P + I + +K + W+ S+ KV E + +
Sbjct: 150 VSQVPRQASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPENYLL 197
>3c8n_A Probable F420-dependent glucose-6-phosphate dehyd FGD1; TIM barrel,
non-prolyl CIS-peptide, oxidoreductase; 1.90A
{Mycobacterium tuberculosis} PDB: 3b4y_A
Length = 356
Score = 29.4 bits (66), Expect = 1.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 26 VRLLLEAGA---LVNVPGLDNDTPLHLAARDVRPALAKL 61
V + G + + PG D L L D+ P L +L
Sbjct: 317 VGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRRL 355
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
RAD9, DNA binding protein; HET: DNA; 2.40A {Homo
sapiens} PDB: 2xnk_A* 2xnh_A*
Length = 298
Score = 28.9 bits (64), Expect = 2.2
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 11/96 (11%)
Query: 115 CIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCIAT 174
+ +I L + Q G + L + L+V
Sbjct: 200 FLGCIICVTGLCGLDRKEVQQLTVKH--GGQ---YMGQLKMNECTHLIVQEPK------G 248
Query: 175 CNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEI 210
A + V W S+E G ++
Sbjct: 249 QKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKT 284
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA
replication, translession synthesis, TLS, DNA polymerase
zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Length = 97
Score = 27.5 bits (61), Expect = 2.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 179 RAILSGIKAVDYTWISRSLEIGKVLPVEEFEI 210
L G K + WI S++ G++L +++
Sbjct: 64 IKELKGEKVIRPEWIVESIKAGRLLSYIPYQL 95
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 19 SIGNESVVRLLLEAGALVNV 38
SIG E V++ LL+ GA V V
Sbjct: 488 SIGAE-VLQGLLQGGAKVVV 506
>3gr5_A ESCC; secretin, type III secretion system, outer membrane,
transport, membrane protein; 2.05A {Escherichia coli}
Length = 156
Score = 28.0 bits (62), Expect = 2.8
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 104 LSAAPPPSLPNCIDIVIYADQLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLV 163
+S+ N + I + + ++ +P+ +S+ + + + +
Sbjct: 4 MSSLEKRLGKN--EYFIITKSSP------VRAILNDFAANYSIPVFISSSVNDDFSGEIK 55
Query: 164 NGTPER 169
N P +
Sbjct: 56 NEKPVK 61
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo
sapiens} PDB: 3ktf_A* 2wt8_A*
Length = 107
Score = 27.6 bits (61), Expect = 2.9
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 117 DIVIYAD----QLDKTQTSGLAQFVKTLSSGADVPIIVSTLLQSNVNILLVNGTPERTCI 172
D+V Y + + + + + GA V S V ++ + T
Sbjct: 10 DVVAYVEVWSSNGTENYSKTFTTQLVDM--GAKV----SKTFNKQVTHVIFKDGYQST-- 61
Query: 173 ATCNVLRAILSGIKAVDYTWISRSLEIGKVLPVEEFEILGTVDY 216
+A G+K V W+ + G + F ++
Sbjct: 62 ----WDKAQKRGVKLVSVLWVEKCRTAGAHIDESLFPAANMNEH 101
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast
thylakoid lumen, plant protein; 2.50A {Arabidopsis
thaliana}
Length = 268
Score = 28.4 bits (63), Expect = 3.1
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 181 ILSGIKAVDYTWISRSLEIG---KVLPVEEFEILGTVDYPLAKPFHRSRENKENLLPGLF 237
L+G AV +T+++ ++ + + G+ + R + P
Sbjct: 103 QLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADP--- 159
Query: 238 NGLQVYLTKPWPTSSPLSSEDMRDIFKR 265
G P + ++M+D F
Sbjct: 160 EG-------RVPQWGKATVQEMKDKFIA 180
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped
structure, DNA binding domain, regulatory domain,
DNA-binding; 2.70A {Mycobacterium tuberculosis}
Length = 303
Score = 27.6 bits (62), Expect = 5.2
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 23 ESVVRLLLEAGALVNVPGLDNDTPLH-LAARDVRPALAKL 61
E + L G+ V V + D PL+ + P +A++
Sbjct: 242 EKLAASPLADGSFVRVCDIHLDVPLYWQCWKLDSPIIARI 281
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I
2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I
3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 27.1 bits (61), Expect = 5.7
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 51 ARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
A+D+ AL++ Q+G +D + + KP+
Sbjct: 94 AKDIAEALSR---QHGVTIDPKRLALEKPI 120
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 27.8 bits (61), Expect = 5.8
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 1 MNPNVKDNAGWTPLHDAVSIGNES 24
++P ++ T ++ S+G +S
Sbjct: 505 VSPESNEDISTTVVYRMESLGEKS 528
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein
interactions, DNA L III-alpha BRCT2 domain, DNA binding
protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A*
3qvg_B* 1cdz_A
Length = 104
Score = 26.4 bits (58), Expect = 5.8
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 183 SGIKAVDYTWISRSLEIGKVLPVEEFEIL 211
+ V WI E K+LP + + ++
Sbjct: 67 PSLAFVRPRWIYSCNEKQKLLPHQLYGVV 95
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K
1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 26.4 bits (59), Expect = 8.3
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 51 ARDVRPALAKLLIQYGADVDKRNIQGHKPL 80
++ + +L Q+G +DKR I+ +
Sbjct: 95 SKQIAESLQA---QHGLKLDKRKIELADAI 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,264,052
Number of extensions: 315248
Number of successful extensions: 1255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 333
Length of query: 348
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 254
Effective length of database: 4,077,219
Effective search space: 1035613626
Effective search space used: 1035613626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.8 bits)