BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3913
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 207/370 (55%), Gaps = 30/370 (8%)
Query: 55 DHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAF 114
D T YTG G+ + Y+ ++ P Y A Y+ N L R IT F
Sbjct: 70 DGTGYTGWAGIAVL--YLHLYDVFGD--PAYLQLAHGYVKQSLNCLTK---RSIT----F 118
Query: 115 LCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLA 174
LCGDAG AV V Y+ + ++++++ D T+L H+ ID +E L GR GY+
Sbjct: 119 LCGDAGPLAVAAVLYHKMNNEKQAE---DCITRL-IHLNKID--PHAPNEMLYGRIGYIY 172
Query: 175 GIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNL--RCPLMYHYYGTEYLGACHG 232
+++ + G + + IC ++ SG + ++ N + PLMY +Y Y+GA HG
Sbjct: 173 ALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHG 232
Query: 233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAAN 292
L+GI L+ + + S + +K +VD++ +L+ P+GN+P + + +
Sbjct: 233 LAGIYYYLM-QPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGD---------NRD 282
Query: 293 ELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGY 352
LVHWCHGAPGVIY++ +AY + EEKYL +C +VIW+ GLLKKG G+CHG +GN Y
Sbjct: 283 LLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAY 342
Query: 353 AFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQP 412
AFL LY LT+D +YL++A FA + L + R PD PFSL+EG+AGT F DL+ P
Sbjct: 343 AFLTLYNLTQDMKYLYRACKFAEWCLEYG-EHGCRTPDTPFSLFEGMAGTIYFLADLLVP 401
Query: 413 EKAAFPFMDV 422
KA FP ++
Sbjct: 402 TKARFPAFEL 411
>pdb|2W5O|A Chain A, Complex Structure Of The Gh93 Alpha-L-Arabinofuranosidase
Of Fusarium Graminearum With Arabinobiose
Length = 367
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 342 GICHGVSGNGYAFLLLYRLTKDEQ-YLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLA 400
G + +G+ Y F + YRL+KD Q +L+KA+ + ++S+D A P ++ Y G
Sbjct: 231 GGPNPPAGSDYWFPVYYRLSKDPQKFLNKAH---HQIVSNDGTTPAGSPYVVWTPYGGKN 287
Query: 401 GT 402
GT
Sbjct: 288 GT 289
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 43 VDANADITKHKIDHTMYTGNLGVGYMLWYVA 73
V ++ K + DH +YTG+ GVG ++ A
Sbjct: 186 VPETTELLKERFDHILYTGSTGVGKIIMTAA 216
>pdb|2YDP|A Chain A, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
pdb|2YDP|B Chain B, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
pdb|2YDP|C Chain C, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
Length = 367
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 342 GICHGVSGNGYAFLLLYRLTKDEQ-YLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLA 400
G + +G+ Y F + YRL+KD Q +L+KA+ + ++S+D A P ++ Y G
Sbjct: 231 GGPNPPAGSDYWFPVYYRLSKDPQKFLNKAH---HQIVSNDGTTPAGSPYVVWTPYGGKN 287
Query: 401 GT 402
GT
Sbjct: 288 GT 289
>pdb|2YDT|A Chain A, Structure Of The Alpha-L-Arabinofuranosidase Arb93a From
Fusarium Graminearum In Complexe With An Iminosugar
Inhibitor
Length = 367
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 342 GICHGVSGNGYAFLLLYRLTKDEQ-YLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLA 400
G + +G+ Y F + YRL+KD Q +L+KA+ + ++S+D A P ++ Y G
Sbjct: 231 GGPNPPAGSDYWFPVYYRLSKDPQKFLNKAH---HQIVSNDGTTPAGSPYVVWTPYGGKN 287
Query: 401 GT 402
GT
Sbjct: 288 GT 289
>pdb|2W5N|A Chain A, Native Structure Of The Gh93 Alpha-L-Arabinofuranosidase
Of Fusarium Graminearum
Length = 367
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 342 GICHGVSGNGYAFLLLYRLTKDEQ-YLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLA 400
G + +G+ Y F + YRL+KD Q +L+KA+ + ++S+D A P ++ Y G
Sbjct: 231 GGPNPPAGSDYWFPVYYRLSKDPQKFLNKAH---HQIVSNDGTTPAGSPYVVWTPYGGKN 287
Query: 401 GT 402
GT
Sbjct: 288 GT 289
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 67 YMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRC 107
+ +WY A+ +Y +APT +KA +++ ++ VL ++ C
Sbjct: 292 FEIWYNAREEVYIIQAPTPEIKA-AWVNEIRKVLTSQLQAC 331
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 67 YMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRC 107
+ +WY A+ +Y +APT +KA +++ ++ VL ++ C
Sbjct: 292 FEIWYNAREEVYIIQAPTPEIKA-AWVNEIRKVLTSQLQAC 331
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 67 YMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRC 107
+ +WY A+ +Y +APT +KA +++ ++ VL ++ C
Sbjct: 292 FEIWYNAREEVYIIQAPTPEIKA-AWVNEIRKVLTSQLQAC 331
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 67 YMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRC 107
+ +WY A+ +Y +APT +KA +++ ++ VL ++ C
Sbjct: 292 FEIWYNAREEVYIIQAPTPEIKA-AWVNAIRKVLTSQLQAC 331
>pdb|2G02|A Chain A, Nisin Cyclase
pdb|2G0D|A Chain A, Nisin Cyclase
Length = 409
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 297 WCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSG 349
WC+G PG+ L L + +++ K E ++ L ICHG SG
Sbjct: 277 WCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSG 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,667,368
Number of Sequences: 62578
Number of extensions: 596617
Number of successful extensions: 1369
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 15
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)