Query psy3913
Match_columns 423
No_of_seqs 217 out of 989
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:36:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787|consensus 100.0 1.4E-78 3.1E-83 538.6 31.0 390 5-422 2-403 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 5.6E-55 1.2E-59 422.2 33.9 341 59-418 1-343 (343)
3 PF05147 LANC_like: Lanthionin 100.0 7.8E-46 1.7E-50 361.3 17.4 344 53-420 2-353 (355)
4 cd04434 LanC_like LanC-like pr 100.0 4E-42 8.7E-47 333.3 33.7 328 59-412 1-336 (343)
5 cd04793 LanC LanC is the cycla 100.0 1.3E-40 2.8E-45 327.0 30.2 342 59-413 1-373 (382)
6 cd04792 LanM-like LanM-like pr 100.0 1.2E-40 2.5E-45 357.5 31.5 333 52-416 483-823 (825)
7 cd04791 LanC_SerThrkinase Lant 100.0 9E-39 1.9E-43 307.3 24.5 313 59-419 1-321 (321)
8 COG4403 LcnDR2 Lantibiotic mod 100.0 1.3E-34 2.8E-39 289.2 27.7 347 24-420 594-962 (963)
9 cd04434 LanC_like LanC-like pr 100.0 2.9E-28 6.3E-33 236.2 26.4 296 24-360 19-336 (343)
10 cd04794 euk_LANCL eukaryotic L 100.0 8.2E-28 1.8E-32 232.7 25.6 291 23-359 22-336 (343)
11 cd04792 LanM-like LanM-like pr 100.0 2.6E-27 5.7E-32 254.4 25.9 306 10-360 484-818 (825)
12 cd04791 LanC_SerThrkinase Lant 99.9 6E-26 1.3E-30 218.2 23.0 256 53-359 37-313 (321)
13 COG4403 LcnDR2 Lantibiotic mod 99.9 5.9E-26 1.3E-30 227.6 21.4 286 22-365 662-958 (963)
14 cd04793 LanC LanC is the cycla 99.9 5.1E-25 1.1E-29 216.5 25.4 302 24-361 19-373 (382)
15 PF05147 LANC_like: Lanthionin 99.9 1.8E-25 4E-30 217.8 14.4 309 10-362 2-347 (355)
16 KOG2787|consensus 99.8 1.4E-19 3.1E-24 162.3 18.5 307 10-361 60-394 (403)
17 COG4225 Predicted unsaturated 97.7 0.0022 4.7E-08 59.9 16.5 235 69-333 45-302 (357)
18 cd00249 AGE AGE domain; N-acyl 97.6 0.013 2.9E-07 57.6 20.7 244 122-379 59-336 (384)
19 COG1331 Highly conserved prote 97.6 0.044 9.5E-07 56.2 24.1 328 61-410 135-548 (667)
20 PF07470 Glyco_hydro_88: Glyco 97.2 0.038 8.3E-07 53.4 18.5 240 65-334 30-287 (336)
21 cd00249 AGE AGE domain; N-acyl 97.1 0.2 4.3E-06 49.3 22.9 256 62-336 55-339 (384)
22 PF07944 DUF1680: Putative gly 97.0 0.0058 1.3E-07 62.7 11.1 132 231-377 64-207 (520)
23 PF07944 DUF1680: Putative gly 96.8 0.074 1.6E-06 54.6 17.6 184 166-376 124-333 (520)
24 COG4225 Predicted unsaturated 96.6 0.17 3.7E-06 47.6 16.5 225 23-272 52-308 (357)
25 PF09492 Pec_lyase: Pectic aci 96.6 0.004 8.8E-08 57.7 5.9 135 233-377 41-210 (289)
26 COG3533 Uncharacterized protei 96.6 0.029 6.2E-07 55.1 11.4 137 227-377 66-210 (589)
27 TIGR02474 pec_lyase pectate ly 96.4 0.029 6.2E-07 52.1 9.9 136 232-377 45-215 (290)
28 PF03663 Glyco_hydro_76: Glyco 96.3 0.01 2.3E-07 58.1 7.1 134 236-380 93-256 (370)
29 PF07470 Glyco_hydro_88: Glyco 94.8 1.1 2.5E-05 43.1 15.0 227 23-273 41-294 (336)
30 COG1331 Highly conserved prote 94.1 3.1 6.8E-05 43.1 16.6 126 54-188 404-556 (667)
31 PF07221 GlcNAc_2-epim: N-acyl 93.4 0.3 6.5E-06 47.3 7.9 134 236-380 26-174 (346)
32 PF03663 Glyco_hydro_76: Glyco 93.3 0.46 9.9E-06 46.6 9.1 124 236-379 41-189 (370)
33 PTZ00470 glycoside hydrolase f 91.4 3 6.6E-05 42.6 12.3 131 239-377 163-319 (522)
34 PLN02993 lupeol synthase 87.5 5.8 0.00013 42.4 11.2 125 138-276 588-722 (763)
35 PF07221 GlcNAc_2-epim: N-acyl 87.3 29 0.00063 33.5 15.7 138 238-378 146-308 (346)
36 KOG2430|consensus 87.1 3.1 6.8E-05 39.1 7.9 79 298-376 183-279 (587)
37 PF13243 Prenyltrans_1: Prenyl 86.1 0.7 1.5E-05 36.2 2.9 58 257-334 1-58 (109)
38 TIGR02474 pec_lyase pectate ly 85.4 19 0.00041 33.7 12.2 114 300-413 45-201 (290)
39 PTZ00470 glycoside hydrolase f 84.9 4.4 9.5E-05 41.4 8.5 74 305-378 161-255 (522)
40 PLN02993 lupeol synthase 84.9 10 0.00022 40.6 11.4 89 227-333 560-650 (763)
41 PF06917 Pectate_lyase_2: Peri 83.5 5.6 0.00012 39.6 8.1 79 304-385 389-477 (557)
42 PF01532 Glyco_hydro_47: Glyco 83.4 5.7 0.00012 40.1 8.6 131 237-377 83-243 (452)
43 KOG3760|consensus 82.7 3.5 7.5E-05 39.7 6.2 113 254-373 379-514 (594)
44 PF09492 Pec_lyase: Pectic aci 82.3 11 0.00025 35.2 9.4 112 301-413 41-196 (289)
45 PLN03012 Camelliol C synthase 81.2 26 0.00057 37.5 12.7 125 138-276 588-722 (759)
46 KOG2429|consensus 80.7 12 0.00026 37.9 9.3 122 243-377 208-403 (622)
47 PF00759 Glyco_hydro_9: Glycos 76.0 16 0.00034 36.8 9.1 120 251-375 94-245 (444)
48 PF06662 C5-epim_C: D-glucuron 74.6 19 0.00042 31.4 8.0 26 306-331 37-62 (189)
49 PF06662 C5-epim_C: D-glucuron 74.6 29 0.00063 30.4 9.1 131 227-373 24-187 (189)
50 PLN02613 endoglucanase 70.8 52 0.0011 33.6 11.1 69 304-372 177-256 (498)
51 PLN02345 endoglucanase 70.7 29 0.00062 35.1 9.3 67 303-371 146-228 (469)
52 PLN02266 endoglucanase 68.7 95 0.0021 31.8 12.5 69 304-374 195-281 (510)
53 COG3533 Uncharacterized protei 68.1 43 0.00094 33.7 9.5 105 24-146 148-257 (589)
54 KOG2431|consensus 67.2 15 0.00032 35.9 6.0 92 235-334 179-276 (546)
55 PLN02420 endoglucanase 66.9 61 0.0013 33.3 10.7 116 250-374 126-277 (525)
56 cd02889 SQCY Squalene cyclase 65.8 46 0.001 31.9 9.6 58 257-335 1-59 (348)
57 TIGR03463 osq_cycl 2,3-oxidosq 65.7 96 0.0021 32.9 12.4 122 138-276 475-604 (634)
58 PLN00119 endoglucanase 65.5 38 0.00083 34.4 9.0 67 303-371 181-263 (489)
59 PLN02909 Endoglucanase 61.6 1E+02 0.0022 31.3 11.2 116 250-372 119-264 (486)
60 KOG2429|consensus 61.6 72 0.0016 32.5 9.7 78 298-375 194-288 (622)
61 PF01532 Glyco_hydro_47: Glyco 60.6 13 0.00027 37.6 4.6 76 304-379 82-178 (452)
62 PLN03009 cellulase 57.5 82 0.0018 32.2 9.8 71 302-372 176-264 (495)
63 PLN02308 endoglucanase 56.9 1.1E+02 0.0023 31.4 10.4 70 304-373 177-262 (492)
64 PLN02340 endoglucanase 55.5 49 0.0011 34.7 7.9 69 304-374 181-265 (614)
65 COG2942 N-acyl-D-glucosamine 2 55.5 1.8E+02 0.0038 28.6 11.1 136 236-380 60-209 (388)
66 PLN02171 endoglucanase 52.4 94 0.002 32.8 9.4 72 304-375 181-267 (629)
67 PF00432 Prenyltrans: Prenyltr 49.4 8.9 0.00019 24.5 1.0 21 256-276 2-22 (44)
68 TIGR01787 squalene_cyclas squa 48.8 2.9E+02 0.0064 29.2 12.6 22 255-276 567-588 (621)
69 TIGR01507 hopene_cyclase squal 47.8 1.3E+02 0.0028 31.9 9.8 104 251-375 12-121 (635)
70 PF13243 Prenyltrans_1: Prenyl 47.0 7.4 0.00016 30.3 0.4 27 250-276 41-67 (109)
71 PLN03012 Camelliol C synthase 46.1 99 0.0022 33.3 8.5 83 233-333 566-650 (759)
72 TIGR03463 osq_cycl 2,3-oxidosq 42.6 78 0.0017 33.5 7.2 45 232-276 452-498 (634)
73 PRK11097 endo-1,4-D-glucanase; 42.5 1.4E+02 0.0031 29.2 8.4 80 298-377 115-211 (376)
74 KOG2244|consensus 37.3 2.3E+02 0.005 29.1 8.9 136 238-376 512-674 (786)
75 TIGR01507 hopene_cyclase squal 31.6 6.5E+02 0.014 26.7 21.3 42 233-276 383-424 (635)
76 cd02892 SQCY_1 Squalene cyclas 28.8 7.2E+02 0.016 26.3 16.9 308 90-410 235-575 (634)
77 COG4833 Predicted glycosyl hyd 26.0 55 0.0012 30.2 2.4 100 298-401 149-271 (377)
78 KOG2431|consensus 25.5 2.1E+02 0.0045 28.3 6.3 59 339-398 169-227 (546)
79 TIGR01787 squalene_cyclas squa 23.9 8.8E+02 0.019 25.7 14.0 41 231-275 489-529 (621)
80 COG5029 CAL1 Prenyltransferase 21.0 82 0.0018 29.8 2.6 84 257-353 225-314 (342)
81 COG3531 Predicted protein-disu 20.7 55 0.0012 28.7 1.3 20 292-311 9-28 (212)
82 KOG2244|consensus 20.6 2.9E+02 0.0062 28.4 6.3 81 293-376 502-608 (786)
83 PF11848 DUF3368: Domain of un 20.2 1E+02 0.0022 20.2 2.2 32 298-336 2-33 (48)
No 1
>KOG2787|consensus
Probab=100.00 E-value=1.4e-78 Score=538.55 Aligned_cols=390 Identities=37% Similarity=0.669 Sum_probs=347.1
Q ss_pred CCCCCCCCCCCCCCC---Cccc---------chhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHH
Q psy3913 5 NTRHFINRLDLNKGG---SLVE---------NFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYV 72 (423)
Q Consensus 5 ~~~~~~n~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l 72 (423)
..|+|+||||+...+ .... .++.+++.+..+.+.+++.....+ ...+.+.++|+|.+|++++++++
T Consensus 2 e~r~~~np~pd~a~G~~e~~~~~~~e~~~~~~~e~~~r~~~~ikd~~~~~~~~~S--~d~~~d~tlYtG~~GiAfl~~kl 79 (403)
T KOG2787|consen 2 ERRAFVNPFPDDASGENETVGSEPDEPTGKLFTEFIKRLATKIKDLVVEMTWGKS--GDEVRDGTLYTGWLGIAFLYLKL 79 (403)
T ss_pred cccccCCCCcccccCCCccccCCCcccccccHHHHHHHHHHHHHHHHHHHHhccc--CCCCcCCceeechHHHHHHHHHH
Confidence 469999999997533 1111 227889999999999999887754 34578999999999999999999
Q ss_pred hhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Q psy3913 73 AQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHI 152 (423)
Q Consensus 73 ~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 152 (423)
+++ |.|. .++..+.++|+.+...- ... ..++|++|.+|++++.+.+++..++++.++..+.++.++...
T Consensus 80 y~v--Trd~--~~L~~~~e~Vk~~~~~~----~s~--~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~- 148 (403)
T KOG2787|consen 80 YEV--TRDL--YDLLLCLEIVKACLVAS----RSS--RRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLC- 148 (403)
T ss_pred HHH--hcCH--HHHHHHHHHHHHHHhhc----ccc--CceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccC-
Confidence 999 9987 79999999998887421 112 589999999999999999999999999898888877655541
Q ss_pred hhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceeecCCcccccccc
Q psy3913 153 KAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHG 232 (423)
Q Consensus 153 ~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG 232 (423)
+ ++-++|+++|++|++++++++++.++.+.+.++.|++|++.|+.+|++.+++.++++|+||+||+++|.|.|||
T Consensus 149 -~----~dlp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhG 223 (403)
T KOG2787|consen 149 -S----SDLPDELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHG 223 (403)
T ss_pred -C----ccccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhh
Confidence 1 23468999999999999999999999999999999999999999999988877788999999999999999999
Q ss_pred hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHH
Q psy3913 233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAY 312 (423)
Q Consensus 233 ~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~ 312 (423)
.+||++.|+.-.-. .+++...++++.+++|+++.+.++||+|.+.++ +.+.+|+||||+||+++.|.+|+
T Consensus 224 LagI~~vLm~~~L~-~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~---------~~drLVhWcHGApGv~~~L~kAy 293 (403)
T KOG2787|consen 224 LAGILYVLMDPTLK-VDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGN---------KRDRLVHWCHGAPGVAYTLAKAY 293 (403)
T ss_pred HHHHHHHHhCCCCC-CcchhHHHhhhhHHHHHHHccCCCCCCCcccCC---------CcceeeeeccCCchHHHHHHHHH
Confidence 99999999994432 224567889999999999999999999998865 56889999999999999999999
Q ss_pred HHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHhhchhhhhcCCCCCCC
Q psy3913 313 LFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAP 392 (423)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 392 (423)
++|++++|++++.++++.+|++|++++++|+|||+|||+|+||.+|++|+|.+|++||.+|++|+++..+..+.+.+|+|
T Consensus 294 ~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~~~g~r~pDrp 373 (403)
T KOG2787|consen 294 QVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGFSHGCRTPDRP 373 (403)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred CccccchHHHHHHHHHccCccCCCCCCCCC
Q psy3913 393 FSLYEGLAGTACFFIDLMQPEKAAFPFMDV 422 (423)
Q Consensus 393 ~gl~~G~aGi~~~Ll~~~~p~~~~fp~~~~ 422 (423)
+|||+|+||.+|+|++++.|++++||+|++
T Consensus 374 ySLfeG~AG~v~~l~Dll~P~~arFP~~El 403 (403)
T KOG2787|consen 374 YSLFEGVAGTVYLLLDLLDPEQARFPGYEL 403 (403)
T ss_pred hhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence 999999999999999999999999999986
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=5.6e-55 Score=422.24 Aligned_cols=341 Identities=45% Similarity=0.859 Sum_probs=285.8
Q ss_pred ccchHHHHHHHHHHhhCCC--CCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChh
Q psy3913 59 YTGNLGVGYMLWYVAQSPI--YASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKE 136 (423)
Q Consensus 59 y~G~~Gi~~~l~~l~~~~~--~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~ 136 (423)
|+|.+|++|++.++++... ++++ +|++.+.+.++.+...+. .+ ..+|+++|.+|+++++..+++.+++++
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~--~y~~~a~~~i~~~~~~~~----~~--~~~~~~~G~aGi~~~l~~l~~~~~d~~ 72 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQ--TYLSWALEYIKASLRAIP----DD--RRISFLCGNAGVYAVGAAVYHYLKDED 72 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCch--HHHHHHHHHHHHHHhhcc----cc--cCCCccCCcHHHHHHHHHHHHHhcChH
Confidence 7899999999999998721 2343 899999988887766543 24 678999999999888889999999988
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCC
Q psy3913 137 RSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCP 216 (423)
Q Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 216 (423)
.++.+++.+.+++...... .+....|+++|.||++++++.+++.++++....+.++++++.+++.++..........|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~--~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 150 (343)
T cd04794 73 EVDEFLSKFLQLLESVVSP--DSGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCP 150 (343)
T ss_pred HHHHHHHHHHHHHHHHhhc--ccCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCC
Confidence 8888888888777553221 12346799999999999999999988755555678899999888765432221112234
Q ss_pred cceeecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccc
Q psy3913 217 LMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVH 296 (423)
Q Consensus 217 ~~~~~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~ 296 (423)
.+|+|++..++|||||++||+++|+.+...+. ++.+.+.++++++++.+.+.++|+||++.+.. .+..+++
T Consensus 151 ~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~--------~~~~~~~ 221 (343)
T cd04794 151 LMYEWHGKEYLGAAHGLAGILYILLQTPLFLL-KPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNR--------KRDRLVQ 221 (343)
T ss_pred ccccccCceecchhhhHHHHHHHHHhhhhhcC-CccHHHHHHHHHHHHHHhhccCCCCCCccCCC--------CCCcccc
Confidence 66778888899999999999999999998876 78999999999999998766789999876531 2345689
Q ss_pred cccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy3913 297 WCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANF 376 (423)
Q Consensus 297 WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 376 (423)
||||++||+.++++++++++++++.+.++++.+.+|++|+..+++|||||++|++++|+++++.|++++|+++|.++++.
T Consensus 222 wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~ 301 (343)
T cd04794 222 WCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEF 301 (343)
T ss_pred ccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997778999999999999999999999999999999999999
Q ss_pred hhchhhhhcCCCCCCCCccccchHHHHHHHHHccCccCCCCC
Q psy3913 377 MLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFP 418 (423)
Q Consensus 377 ~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~p~~~~fp 418 (423)
++++.++.+.+.++.++|||+|+||++|+|+++.+|+++.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 302 LINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred HhcchhhhccCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence 987765556667789999999999999999999999999998
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=7.8e-46 Score=361.29 Aligned_cols=344 Identities=25% Similarity=0.366 Sum_probs=255.9
Q ss_pred CCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHh
Q psy3913 53 KIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAV 132 (423)
Q Consensus 53 ~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~ 132 (423)
|.+.++|+|.+|++++|.++++. +++. +|.+.+.++++.+...+... .. ..+++++|.+|+++++..+++..
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~--~~~~--~~~~~~~~~l~~~~~~~~~~--~~--~~~gl~~G~~Gi~~~l~~~~~~~ 73 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRI--TGDP--KYLDLAEKLLEKLINYIENN--PY--DSIGLFSGLAGIAYALSYLSKRL 73 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCC--CTHH--HHHHHHHHHHHHHCCCHHCC------S--STTTSCHHHHHHHHHHCCCT
T ss_pred CCCCcCCCchHHHHHHHHHHHHh--cCCc--HHHHHHHHHHHHHHHHHHhc--cC--cCCcccCChHHHHHHHHHHHHhc
Confidence 56889999999999999999988 8775 89999999998887776531 11 28999999999988877777766
Q ss_pred CChhHHHHHHHHHHHHHHHHhhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCcccccccc
Q psy3913 133 GDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANN 212 (423)
Q Consensus 133 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 212 (423)
++....+..++.+...+......+ .....|+++|.||++.+++.+++.++++.+. +.+.++++.+++...... .
T Consensus 74 ~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~---~ 147 (355)
T PF05147_consen 74 GDEKYIEELLKRILNIIENSISND--SNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDD---P 147 (355)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHCT----GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCH---T
T ss_pred cchHHHHHHHHHHHHHHHHhhhhc--ccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhcc---c
Confidence 655555566666655554332211 1112899999999999999999888665554 577778887776443221 1
Q ss_pred CCCCcceee-cCCcccccccchHHHHHHHhccc-cccCCCcchHHHHHHHHHHHHHccC-CCCCCCCCCccCCCCCcccc
Q psy3913 213 LRCPLMYHY-YGTEYLGACHGLSGILQVLLCEK-NYVKSNPDIEKDIKETVDFLLKLQM-PNGNFPADLKELYSPTDAKS 289 (423)
Q Consensus 213 ~~~~~~~~~-~~~~~~G~aHG~~GI~~~Ll~~~-~~~~~~~~~~~~i~~~~~~l~~~~~-~~g~wp~~~~~~~~~~~~~~ 289 (423)
...+.++.| .+..++|++||.+||+++|+.++ +.+. ++++.+.++++++++.+.+. .+++||..+..
T Consensus 148 ~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (355)
T PF05147_consen 148 SENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTK-DPEYLKLIEQILNFLLKHFNTDDGGWPDNRNN--------- 217 (355)
T ss_dssp CCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT---HHHHHHCHHHHHHHHHHC--TGCCT--SECTH---------
T ss_pred ccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccC-chhHHHHHHHHHHHHHHhcCcccCCCCCCCCc---------
Confidence 123344556 56778999999999999999999 5776 68899999999999999764 46669976543
Q ss_pred ccc-cccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHH
Q psy3913 290 AAN-ELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLH 368 (423)
Q Consensus 290 ~~~-~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~ 368 (423)
... .+.+||||++||+.++.++++.++++++.+.++++.+.+++++....++|||||.+|++++|+.+++.+++++|.+
T Consensus 218 ~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~ 297 (355)
T PF05147_consen 218 SNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLYKYTGDEEYKE 297 (355)
T ss_dssp HHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHHHHH--HCCHH
T ss_pred cccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHHHHcCCHHHHH
Confidence 111 1689999999999999999999999999999999999999887556799999999999999999999999999999
Q ss_pred HHHHHHHHhhchh----hhhcCCCCCCCCccccchHHHHHHHHHccCccCCCCCCC
Q psy3913 369 KAYLFANFMLSDD----FKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFM 420 (423)
Q Consensus 369 ~a~~~~~~~~~~~----~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~p~~~~fp~~ 420 (423)
++.++++.++... +..+......+.|||+|.|||+++|+++.+|++++||-+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~ 353 (355)
T PF05147_consen 298 LANKLIQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSI 353 (355)
T ss_dssp HHHHHHHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCcc
Confidence 9999988776432 333445556778999999999999999999999999864
No 4
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=100.00 E-value=4e-42 Score=333.34 Aligned_cols=328 Identities=30% Similarity=0.461 Sum_probs=255.7
Q ss_pred ccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHH
Q psy3913 59 YTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERS 138 (423)
Q Consensus 59 y~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l 138 (423)
|+|.+||++++.++++. ++++ ++.+.+...++.+...+... .. ...++++|.+|+++++..+++.+++++.+
T Consensus 1 y~G~~Gi~l~l~~l~~~--~~~~--~~~~~~~~~~~~i~~~~~~~--~~--~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~ 72 (343)
T cd04434 1 YHGAAGIALLLLELYRV--TPDE--KYQDLAHKALEYIVKSLSSL--PD--TDISLFSGLAGIAYALAALSKGLGDQELL 72 (343)
T ss_pred CCChHHHHHHHHHHHhc--cCCc--cHHHHHHHHHHHHHHHHHhC--CC--CCeeeecchHHHHHHHHHHHHHcCCHHHH
Confidence 78999999999999999 8876 78888888888777765421 11 37899999999988888889988888877
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcc
Q psy3913 139 QCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLM 218 (423)
Q Consensus 139 ~~~l~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
+.+.+.+.++....... ......|+++|.||++++++.+++.++++.. .+.+.++++.+++....- .....
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------~~~~~ 143 (343)
T cd04434 73 KELLELLLLLVELILED--LKDLNYDLLSGLAGLLLALLLLYKTFGEEIF-LELIRKILDYLLELGKNG------DGKIR 143 (343)
T ss_pred HHHHHHHHHhhhhhhcc--cCCCCcceeechHHHHHHHHHHHHhcCCcCH-HHHHHHHHHHHHHhhhhc------cCCCc
Confidence 77666666555543211 1246789999999999999999988766543 457778888887643210 00111
Q ss_pred ee---ecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccC-CCCCCCCCCccCCCCCccccccccc
Q psy3913 219 YH---YYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQM-PNGNFPADLKELYSPTDAKSAANEL 294 (423)
Q Consensus 219 ~~---~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~-~~g~wp~~~~~~~~~~~~~~~~~~~ 294 (423)
|. ..+..+.|||||.+||+++|+.+++.+. ++.+.+.++.+++++.+.+. +.++|++.... ......
T Consensus 144 ~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 214 (343)
T cd04434 144 WPMYFPEGRVNLGLAHGLAGILLALLLLYKKTV-DKSLEALIKALLKYERRLQDDSGGFWWPSRSN--------GGNRFL 214 (343)
T ss_pred eeeeccCCccccchhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHccCCCCCCCCCCCCC--------CCcccc
Confidence 21 1245689999999999999999999885 67788888888888877655 44566542111 134456
Q ss_pred cccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCC-CCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHH
Q psy3913 295 VHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL-KKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLF 373 (423)
Q Consensus 295 ~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~ 373 (423)
.+||||++|++.++.++++.++++++.+.+++..+.+++.... .+++|||||.+|++++|+++++.+++++++++|.++
T Consensus 215 ~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~ 294 (343)
T cd04434 215 VAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALAL 294 (343)
T ss_pred ceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999887653 468999999999999999999999999999999998
Q ss_pred HHHhhchh--hhhc-CCCCCCCCccccchHHHHHHHHHccCc
Q psy3913 374 ANFMLSDD--FKRN-ARMPDAPFSLYEGLAGTACFFIDLMQP 412 (423)
Q Consensus 374 ~~~~~~~~--~~~~-~~~~~~~~gl~~G~aGi~~~Ll~~~~p 412 (423)
+..+.... +... ......++|||+|.|||+++|+++++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 295 ALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred HHHHHHHHhhhcccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 88776432 2222 134467899999999999999999998
No 5
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=100.00 E-value=1.3e-40 Score=327.02 Aligned_cols=342 Identities=18% Similarity=0.194 Sum_probs=236.4
Q ss_pred ccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHH-HhCChhH
Q psy3913 59 YTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYN-AVGDKER 137 (423)
Q Consensus 59 y~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~-~~~~~~~ 137 (423)
|+|.+||+++|.++++. ++++ +|.+.+.++++.+.+.+++ .. ...++++|.+|+...+..+++ ...+++.
T Consensus 1 y~G~~GIalf~~~l~~~--~~~~--~~~~~a~~~l~~~~~~l~~---~~--~~~s~f~G~~Gi~~al~~~~~~~~~~~~~ 71 (382)
T cd04793 1 SHGAPGIALLLSELAKH--TKDE--GYWERVHQYLSKALNYLLS---LG--YSSSLFSGAAGVAFALLILSDNGKRYQEL 71 (382)
T ss_pred CCcHHHHHHHHHHHHHh--Cccc--chHHHHHHHHHHHHHHHHh---CC--CCCcccccHHHHHHHHHHHccCcHhHHHH
Confidence 78999999999999999 9887 8999999999988887763 11 368999999999666556655 2233333
Q ss_pred HHHHHHHHHHHHHHHhh----ccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCc-c----cc
Q psy3913 138 SQCHFDMYTKLATHIKA----IDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGR-S----YS 208 (423)
Q Consensus 138 l~~~l~~~~~~~~~~~~----~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~-~----~~ 208 (423)
++...+.+..+++.... ........+|+++|.||++.+++.++. .+. .....+.++++.+++... . |.
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (382)
T cd04793 72 LESLDELIKAIVRRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHE--PDS-ELLREILDYLVYLTEPLNQDITLYIW 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceeechHHHHHHHHhccC--cch-hHHHHHHHHHHHHHHHHhcCCCCccC
Confidence 33333333333322111 000124568999999999999988761 111 112345556665554211 1 11
Q ss_pred ccccCCCCccee--ecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccC--CCCCCCCCC-ccCCC
Q psy3913 209 QANNLRCPLMYH--YYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQM--PNGNFPADL-KELYS 283 (423)
Q Consensus 209 ~~~~~~~~~~~~--~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~--~~g~wp~~~-~~~~~ 283 (423)
..... ....+. ..+..++|||||++||+.+|..+++....++.+.+.++++++++.+.+. ..++|+... .....
T Consensus 149 ~~~~~-~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 227 (382)
T cd04793 149 SENQP-SETESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQ 227 (382)
T ss_pred cCcCC-CccccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHH
Confidence 10000 000000 0134578999999999999999998873378899999999999988653 355775432 10000
Q ss_pred -CCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCC---CCCCcccCchhhHHHHHHHHHH
Q psy3913 284 -PTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL---KKGPGICHGVSGNGYAFLLLYR 359 (423)
Q Consensus 284 -~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~LChG~aG~~~~ll~l~~ 359 (423)
..........+.+||||++||+.++..+++.++++++.+.+.++.+.++++... ..++|||||.+|++++|+++++
T Consensus 228 ~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~ 307 (382)
T cd04793 228 IGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYK 307 (382)
T ss_pred hccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHH
Confidence 000001233457999999999999999999999999999999999888754321 2589999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhhchhhhh------------cCCCCCCCCccccchHHHHHHHHHccCcc
Q psy3913 360 LTKDEQYLHKAYLFANFMLSDDFKR------------NARMPDAPFSLYEGLAGTACFFIDLMQPE 413 (423)
Q Consensus 360 ~t~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~gl~~G~aGi~~~Ll~~~~p~ 413 (423)
.|++++++++|.++++.++++.-+. +......++|||+|.|||+++||++++|+
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 308 DTNTNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 9999999999999988876442110 11223477899999999999999999987
No 6
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=100.00 E-value=1.2e-40 Score=357.46 Aligned_cols=333 Identities=21% Similarity=0.232 Sum_probs=259.0
Q ss_pred CCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHH
Q psy3913 52 HKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNA 131 (423)
Q Consensus 52 ~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~ 131 (423)
.+.+.++|+|.+||+++|.++++. ++++ +|.+.+.+.++.+...++...... ...++++|.+|+++++..+++.
T Consensus 483 ~~~~~~LY~G~aGIal~l~~l~~~--t~~~--~~~~~a~~~l~~l~~~~~~~~~~~--~~~gl~~G~aGi~~~L~~l~~~ 556 (825)
T cd04792 483 SPLGNDLYDGSAGIALFLAYLGQL--TGDE--RYTRLARKILDSLVKSLSELKTDD--TGIGAFSGLGGILYALTHLGKL 556 (825)
T ss_pred ecCCCcccCChHHHHHHHHHHHHH--hCCh--HHHHHHHHHHHHHHHHHhcccccc--cCceeEechhHHHHHHHHHHHH
Confidence 478899999999999999999999 8876 899888988888777664311112 4688999999998777888998
Q ss_pred hCChhHHHHHHHHHHHHHHHHhhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccc
Q psy3913 132 VGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQAN 211 (423)
Q Consensus 132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 211 (423)
++++.+.+.+.+.+..+..... +....|+++|.||++++++.+++.++++.+ .+.+.++++.+++.....
T Consensus 557 ~~~~~~~~~a~~~~~~l~~~~~-----~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~-l~~a~~~~~~l~~~~~~~---- 626 (825)
T cd04792 557 LKDDRLLNLAKEILDLIDELIE-----KDEKLDFISGAAGLILVLLSLYELFLSERF-LDLALKCGDHLLENASNE---- 626 (825)
T ss_pred cCCHHHHHHHHHHHHHHHHhhc-----cccCCCEeeecHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHhhhhc----
Confidence 8887755544443333322211 235689999999999999999998876544 345677777776542210
Q ss_pred cCCCCcceeecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccC-CCCCCCCCCccCCCCCccccc
Q psy3913 212 NLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQM-PNGNFPADLKELYSPTDAKSA 290 (423)
Q Consensus 212 ~~~~~~~~~~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~-~~g~wp~~~~~~~~~~~~~~~ 290 (423)
. ...|...+..+.|||||.+||+++|+.+++.++ ++.+.+.+.++++++.+.+. ..++||... .
T Consensus 627 -~--~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~-d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~-----------~ 691 (825)
T cd04792 627 -D--GGIGPAEQPNLTGFAHGASGIAWALLRLYKVTG-DSRYLKLAHKALKYERRLFSEEGWNWPRKD-----------G 691 (825)
T ss_pred -c--CCcccccccccccccccHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHhcCHhhcCCCCcC-----------c
Confidence 0 001222234578999999999999999999988 78899999999998876554 456898321 2
Q ss_pred cccccccccCchHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHH
Q psy3913 291 ANELVHWCHGAPGVIYLMAKAYLF--WGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLH 368 (423)
Q Consensus 291 ~~~~~~WChG~~Gi~~~l~~~~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~ 368 (423)
.....+||||++||+.+++++++. .+++.+.+.++++.+.+++.+.. .++|||||.+|++.+|+.+++.+++++|.+
T Consensus 692 ~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~~-~~~slCHG~~Gil~~ll~~~~~~~~~~~~~ 770 (825)
T cd04792 692 NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGFG-NNHSLCHGDLGNLEILLYAAKAFGDEKLQE 770 (825)
T ss_pred CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcCC-CCCeecCCCcchHHHHHHHHHhcCCHHHHH
Confidence 344579999999999999999998 78999999999999998887754 689999999999999999999999999999
Q ss_pred HHHHHHHHhhch----hhhhcCCCCCCCCccccchHHHHHHHHHccCcc-CCC
Q psy3913 369 KAYLFANFMLSD----DFKRNARMPDAPFSLYEGLAGTACFFIDLMQPE-KAA 416 (423)
Q Consensus 369 ~a~~~~~~~~~~----~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~p~-~~~ 416 (423)
+|.+.+..++.. .|..+......++|||+|+|||+|+|+|+.+|+ .|+
T Consensus 771 ~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p~~vps 823 (825)
T cd04792 771 LANSLAIKVLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDRVPS 823 (825)
T ss_pred HHHHHHHHHHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhCCCCCCC
Confidence 998887776533 355555555678999999999999999999985 344
No 7
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=100.00 E-value=9e-39 Score=307.28 Aligned_cols=313 Identities=20% Similarity=0.225 Sum_probs=229.4
Q ss_pred ccchHHHHHHHHHHh-hCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhH
Q psy3913 59 YTGNLGVGYMLWYVA-QSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKER 137 (423)
Q Consensus 59 y~G~~Gi~~~l~~l~-~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~ 137 (423)
|+|.+||++++.+++ .. ..+ .+.++|....... ... ..+++++|.+|+++++..+ +..+.
T Consensus 1 ~~G~aGi~~~l~~~~~~~--~~~-------~~~~~i~~~~~~~----~~~--~~~gl~~G~~Gi~~~l~~~----~~~~~ 61 (321)
T cd04791 1 AHGAAGVLMALLRSGFGD--YAE-------NALDWIEEAATRE----LSG--SPPGLYDGRAGIAWVLIEL----GHPAR 61 (321)
T ss_pred CchHHHHHHHHHHhcCCC--CCc-------hHHHHHHHHhhcc----CCC--CCCccccChhhHHHHHHHc----CCHHH
Confidence 689999999999987 32 222 2344454443321 112 4689999999997665443 33332
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCc
Q psy3913 138 SQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPL 217 (423)
Q Consensus 138 l~~~l~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 217 (423)
.++.++.+ .+.. .+..+.|+++|.||++++++.+++. +++.+. +.++++++.+.+..... .. ..
T Consensus 62 ~~~~~~~~---~~~~-----~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l-~~a~~~~~~l~~~~~~~-----~~-~~ 125 (321)
T cd04791 62 AKALFDTL---LDEP-----SANLNIDLASGLAGIGLALLYFART-GDPALL-EAAAKIAELLAEALERG-----DP-AL 125 (321)
T ss_pred HHHHHHHH---hccc-----ccccCCccccchHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHhhcc-----cc-cc
Confidence 33322222 1111 1235789999999999999999988 766543 46677777776542210 01 11
Q ss_pred ceeecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccC-CCCCCCCCCccCCCCCccccccccccc
Q psy3913 218 MYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQM-PNGNFPADLKELYSPTDAKSAANELVH 296 (423)
Q Consensus 218 ~~~~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~-~~g~wp~~~~~~~~~~~~~~~~~~~~~ 296 (423)
.|...+..+.||+||.+||+++|+.+++.++ ++.+++.++++++++++.+. ..++|..... ....+.+
T Consensus 126 ~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~-d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~ 194 (321)
T cd04791 126 LWPDFDRVDHGLLHGWAGIALFLLRLYKATG-DSRYLELAEEALDKELARAVVDDGGLLQVDE----------GARLLPY 194 (321)
T ss_pred ccccCCCCCCccccCcHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHhhccCCCCceEcCC----------CCccCcc
Confidence 2222334578999999999999999999998 78999999999999988654 3455643221 2345678
Q ss_pred cccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy3913 297 WCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANF 376 (423)
Q Consensus 297 WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 376 (423)
||||++|++.++.++++.++|+++.+.++++.+.+++.+. +++|+|||.+|++.+|+.+++.++++.|+++|.+++++
T Consensus 195 wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~--~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~ 272 (321)
T cd04791 195 LCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSCY--ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALY 272 (321)
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc--cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887653 68999999999999999999999999999999999998
Q ss_pred hhchhhhh------cCCCCCCCCccccchHHHHHHHHHccCccCCCCCC
Q psy3913 377 MLSDDFKR------NARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPF 419 (423)
Q Consensus 377 ~~~~~~~~------~~~~~~~~~gl~~G~aGi~~~Ll~~~~p~~~~fp~ 419 (423)
++...-.. +......++|||+|.|||+++|+++.+++...||.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 273 LIATADEIEGPVFPGDQGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321 (321)
T ss_pred hccccCCccccccCCccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence 87542111 11111356899999999999999999988888984
No 8
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=100.00 E-value=1.3e-34 Score=289.23 Aligned_cols=347 Identities=18% Similarity=0.247 Sum_probs=271.4
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCc-----------------ccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHH
Q psy3913 24 NFTVWKEEADKIIQSVLINVDANA-----------------DITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYY 86 (423)
Q Consensus 24 ~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~ 86 (423)
+++-+-+.|.+..++|++..-... ....+|...++|+|.+||++|+++++.+ |+.. .|.
T Consensus 594 ~~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~v--tgk~--~Y~ 669 (963)
T COG4403 594 DNEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALV--TGKD--YYK 669 (963)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHh--cChH--HHH
Confidence 456788888888888887753221 1123577889999999999999999999 8876 899
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q psy3913 87 LKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFL 166 (423)
Q Consensus 87 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~d~l 166 (423)
+.|.+.+..+.+.+.. ..+..+.+.+.|.+|....+..++..+++....+.+.+.+.++. .+.. ....+|++
T Consensus 670 ~ia~~~L~~~~~sv~~---~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le-~~v~----~~~~~d~i 741 (963)
T COG4403 670 EIAIKALQDSRKSVNN---NLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLE-ILVQ----KSKDPDFI 741 (963)
T ss_pred HHHHHHHHHHHHhhhh---ccCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHH-HHHh----hccCcchh
Confidence 9999999888887753 22124588999999996666788888888776666666665333 3222 13569999
Q ss_pred ccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceeecCCcccccccchHHHHHHHhccccc
Q psy3913 167 VGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNY 246 (423)
Q Consensus 167 ~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~GI~~~Ll~~~~~ 246 (423)
.|.||.+..++.+++.+.++++. +.+..+.+.+++..... .. |. +..+|++||++||+++|+.+++.
T Consensus 742 ~Gl~g~i~~L~~iYk~~~epk~l-~~ais~~~~l~~~~v~~-----d~------s~-~~l~gfshg~sgi~~tL~~ly~~ 808 (963)
T COG4403 742 NGLAGVICVLVSIYKLTDEPKFL-ELAISLGRILMEKIVGN-----DS------SE-TVLLGFSHGASGIILTLLKLYEA 808 (963)
T ss_pred hccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHhhcc-----cc------cc-ceecccccchHHHHHHHHHHHHh
Confidence 99999999999999998776554 35566666666532110 00 11 35689999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHH
Q psy3913 247 VKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIK 326 (423)
Q Consensus 247 ~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~ 326 (423)
++ ++.+++.|++++.+....+ +..-..||||.+|++..-....+.+.|+.+.+.++.
T Consensus 809 T~-e~~l~~~i~e~~~~Er~~f----------------------~~~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~ 865 (963)
T COG4403 809 TG-EESLLKKIKELLSYERMKF----------------------SDKFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQ 865 (963)
T ss_pred cC-cHHHHHHHHHHHHHHHHHH----------------------HHHHHHHhcCCcceeechhhhhhhcchHHHHHHHHH
Confidence 99 7888888988887775532 112357999999999766666677899999999999
Q ss_pred HHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHhhch----hhhhcCCCCCCCCccccchHHH
Q psy3913 327 CGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSD----DFKRNARMPDAPFSLYEGLAGT 402 (423)
Q Consensus 327 ~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~gl~~G~aGi 402 (423)
+...+...|+. +.++|||..|+..+|+.+++.+++++.++-|.+.+-.+.++ .|.++...++.++|||+|++||
T Consensus 866 ~l~~~i~~glg--n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGi 943 (963)
T COG4403 866 ALKTIINNGLG--NDSLCHGDFGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGI 943 (963)
T ss_pred HHHHHHhccCC--CccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHH
Confidence 99999999994 89999999999999999999999999999998877766544 3556776677889999999999
Q ss_pred HHHHHHccCc-cCCCCCCC
Q psy3913 403 ACFFIDLMQP-EKAAFPFM 420 (423)
Q Consensus 403 ~~~Ll~~~~p-~~~~fp~~ 420 (423)
+|.|||+..| ..|++..+
T Consensus 944 gY~lLR~~~p~~vpsiL~l 962 (963)
T COG4403 944 GYSLLRISSPKFVPSILWL 962 (963)
T ss_pred HHHHHHHhCcccCCceeec
Confidence 9999999999 44776554
No 9
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.97 E-value=2.9e-28 Score=236.19 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=208.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhh
Q psy3913 24 NFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATK 103 (423)
Q Consensus 24 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~ 103 (423)
+++++.+.+..+++.+...+.... ..+.|+|+|.+|+++++.++++. ++++ ++++.+.+.++...+.+...
T Consensus 19 ~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~G~~Gi~~~l~~l~~~--~~~~--~~~~~~~~~~~~~~~~~~~~ 89 (343)
T cd04434 19 PDEKYQDLAHKALEYIVKSLSSLP-----DTDISLFSGLAGIAYALAALSKG--LGDQ--ELLKELLELLLLLVELILED 89 (343)
T ss_pred CCccHHHHHHHHHHHHHHHHHhCC-----CCCeeeecchHHHHHHHHHHHHH--cCCH--HHHHHHHHHHHHhhhhhhcc
Confidence 457788888889898888765432 15789999999999999999998 8876 88888888887776654211
Q ss_pred ccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc----ccc-----CCCCccccccchhHHH
Q psy3913 104 KHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI----DYV-----KFGGDEFLVGRAGYLA 174 (423)
Q Consensus 104 ~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~-----~~~~~d~l~G~aG~l~ 174 (423)
... ...|+++|.+|++.++..+++.++++...+.+.+..+.+++..... .|. .....++.||.+|+++
T Consensus 90 -~~~--~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~ 166 (343)
T cd04434 90 -LKD--LNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILL 166 (343)
T ss_pred -cCC--CCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHH
Confidence 123 5789999999998777788887777665555555555454432211 121 1235678999999999
Q ss_pred HHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCccee----ecCCcccccccchHHHHHHHhccccccCCC
Q psy3913 175 GIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYH----YYGTEYLGACHGLSGILQVLLCEKNYVKSN 250 (423)
Q Consensus 175 ~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~ 250 (423)
+++.+++.+.++ ...+.++++.....+... .....+|+ .......+||||.+||+.+|+.+++.++ +
T Consensus 167 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~-~ 237 (343)
T cd04434 167 ALLLLYKKTVDK-SLEALIKALLKYERRLQD-------DSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALG-D 237 (343)
T ss_pred HHHHHHHhcCCh-hHHHHHHHHHHHHHHccC-------CCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcC-c
Confidence 999999987443 223333333333222110 00000010 0123578999999999999999999988 6
Q ss_pred cchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHH
Q psy3913 251 PDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEV 330 (423)
Q Consensus 251 ~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~ 330 (423)
+.+.+.+++.++...+..... ....+||||.+|++.++.++++.++++++.+.+.+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~ 297 (343)
T cd04434 238 DKYDEAAEKALELAWKRGLLE--------------------LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALL 297 (343)
T ss_pred HHHHHHHHHHHHHHHHhhhcc--------------------CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888888877776521100 123568999999999999999999999999998888776
Q ss_pred HHHh------C---CCCCCCcccCchhhHHHHHHHHHHH
Q psy3913 331 IWEK------G---LLKKGPGICHGVSGNGYAFLLLYRL 360 (423)
Q Consensus 331 ~~~~------g---~~~~~~~LChG~aG~~~~ll~l~~~ 360 (423)
+... . ....++|||+|+||++++|+++...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 298 LISHANGWLCGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred HHHHHhhhcccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 5421 1 1245899999999999999998764
No 10
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.96 E-value=8.2e-28 Score=232.69 Aligned_cols=291 Identities=17% Similarity=0.109 Sum_probs=203.9
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhh
Q psy3913 23 ENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLAT 102 (423)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~ 102 (423)
.+++++.+.+.+.++.+...++. ..+.+++.|.+|+++++.++++. ++|+ ++.+.+.+.++.+.+....
T Consensus 22 ~~~~~y~~~a~~~i~~~~~~~~~-------~~~~~~~~G~aGi~~~l~~l~~~--~~d~--~~~~~~~~~~~~~~~~~~~ 90 (343)
T cd04794 22 TNDQTYLSWALEYIKASLRAIPD-------DRRISFLCGNAGVYAVGAAVYHY--LKDE--DEVDEFLSKFLQLLESVVS 90 (343)
T ss_pred cCchHHHHHHHHHHHHHHhhccc-------ccCCCccCCcHHHHHHHHHHHHH--hcCh--HHHHHHHHHHHHHHHHHhh
Confidence 35678999888888888776542 24679999999999999999998 8886 7888888877766554211
Q ss_pred hccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHH-HHHHHHHHh---hc---cc------cCCCCccccccc
Q psy3913 103 KKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDM-YTKLATHIK---AI---DY------VKFGGDEFLVGR 169 (423)
Q Consensus 103 ~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~-~~~~~~~~~---~~---~~------~~~~~~d~l~G~ 169 (423)
. ..+ ...++++|.+|+++++..+++.+++.+..+..++. ++++++... .. .| .......+-||.
T Consensus 91 ~-~~~--~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~ 167 (343)
T cd04794 91 P-DSG--LPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGL 167 (343)
T ss_pred c-ccC--CchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhH
Confidence 0 122 45799999999987778888888743222222222 223332211 10 11 111124577999
Q ss_pred hhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceee-c----CCcccccccchHHHHHHHhccc
Q psy3913 170 AGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHY-Y----GTEYLGACHGLSGILQVLLCEK 244 (423)
Q Consensus 170 aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~G~aHG~~GI~~~Ll~~~ 244 (423)
+|++++++.++..++++.+ .+.+++.++.+.+.... . -.|+. . +..+.+||||++||+.+|+.++
T Consensus 168 aGI~~~L~~~~~~~~~~~~-~~~i~~~i~~~~~~~~~------~---g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~ 237 (343)
T cd04794 168 AGILYILLQTPLFLLKPSL-APLIKRSLDYLLSLQFP------S---GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAY 237 (343)
T ss_pred HHHHHHHHhhhhhcCCccH-HHHHHHHHHHHHHhhcc------C---CCCCCccCCCCCCccccccCCCchHHHHHHHHH
Confidence 9999998888887665433 44666666666543110 0 01221 1 2346799999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHH
Q psy3913 245 NYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSC 324 (423)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a 324 (423)
+.++ ++.+.+.++.+.+.+.+ .|. . . .-.++|||++|++++|+++++.++++++++.|
T Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~----~g~-----~----------~--~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a 295 (343)
T cd04794 238 LVFK-EEQYLEAAIKCGELIWK----RGL-----L----------K--KGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRA 295 (343)
T ss_pred HHhC-CHHHHHHHHHHHHHHHH----hCC-----c----------c--CCCccccCccchHHHHHHHHHHhCcHHHHHHH
Confidence 9987 67888888888776643 221 0 1 11356999999999999999999999999999
Q ss_pred HHHHHHHHHhC------CCCCCCcccCchhhHHHHHHHHHH
Q psy3913 325 IKCGEVIWEKG------LLKKGPGICHGVSGNGYAFLLLYR 359 (423)
Q Consensus 325 ~~~~~~~~~~g------~~~~~~~LChG~aG~~~~ll~l~~ 359 (423)
.+..+.+++.. ...++++||+|+||+++.|+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~G~aG~~~~ll~~~~ 336 (343)
T cd04794 296 CKFAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQ 336 (343)
T ss_pred HHHHHHHhcchhhhccCCCCCCchhhccHHhHHHHHHHHcC
Confidence 99988876532 235689999999999999999874
No 11
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.96 E-value=2.6e-27 Score=254.44 Aligned_cols=306 Identities=18% Similarity=0.199 Sum_probs=220.0
Q ss_pred CCCCCCCCCCC----------cccchhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCC
Q psy3913 10 INRLDLNKGGS----------LVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYA 79 (423)
Q Consensus 10 ~n~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~ 79 (423)
|.+.+.|+|.. ....++++++.+.++++.+...+.... ....+.|+|+|.+|+++++.++++. ++
T Consensus 484 ~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~gl~~G~aGi~~~L~~l~~~--~~ 558 (825)
T cd04792 484 PLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELK---TDDTGIGAFSGLGGILYALTHLGKL--LK 558 (825)
T ss_pred cCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhccc---ccccCceeEechhHHHHHHHHHHHH--cC
Confidence 66667777641 114567899999999999988875431 1135789999999999999999998 88
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc-ccc
Q psy3913 80 SEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI-DYV 158 (423)
Q Consensus 80 d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 158 (423)
++ .+.+.+.+.++.+.+.+. .. ...|+++|.+|++.++..+++.++++..++.+.+.++.++...... .|.
T Consensus 559 ~~--~~~~~a~~~~~~l~~~~~----~~--~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~ 630 (825)
T cd04792 559 DD--RLLNLAKEILDLIDELIE----KD--EKLDFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGI 630 (825)
T ss_pred CH--HHHHHHHHHHHHHHHhhc----cc--cCCCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCc
Confidence 76 888888888776655432 23 5789999999998777888998888887777777777666543221 111
Q ss_pred ----CCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceee--cCCcccccccc
Q psy3913 159 ----KFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHY--YGTEYLGACHG 232 (423)
Q Consensus 159 ----~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~G~aHG 232 (423)
.....++.||.||++++++.+++.++++.+. +.+.++++....... .....|+- ......+||||
T Consensus 631 ~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~-~~a~~~l~~~~~~~~--------~~~~~w~~~~~~~~~~~WChG 701 (825)
T cd04792 631 GPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYL-KLAHKALKYERRLFS--------EEGWNWPRKDGNSFSAAWCHG 701 (825)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHhcC--------HhhcCCCCcCcCCCCCcccCC
Confidence 1235689999999999999999988875432 233444433221100 00001110 01246799999
Q ss_pred hHHHHHHHhccccc--cCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHH
Q psy3913 233 LSGILQVLLCEKNY--VKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAK 310 (423)
Q Consensus 233 ~~GI~~~Ll~~~~~--~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~ 310 (423)
++||+++++.+.+. .. ++.+.+.+..+++.+.+ .+.+ .+ .+||||++|++.+|..
T Consensus 702 ~~GI~lal~~~~~~~~~~-d~~~~~~i~~~~~~~~~----~~~~---------------~~---~slCHG~~Gil~~ll~ 758 (825)
T cd04792 702 APGILLARLELLKFNDLD-DEELKEEIEIALKTTLK----EGFG---------------NN---HSLCHGDLGNLEILLY 758 (825)
T ss_pred cHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHH----hcCC---------------CC---CeecCCCcchHHHHHH
Confidence 99999999999988 44 66777888888877765 2221 12 4579999999999999
Q ss_pred HHHHhCcHhHHHHHHHHHHHHHH--------hCCC--CCCCcccCchhhHHHHHHHHHHH
Q psy3913 311 AYLFWGEEKYLNSCIKCGEVIWE--------KGLL--KKGPGICHGVSGNGYAFLLLYRL 360 (423)
Q Consensus 311 ~~~~~~~~~~~~~a~~~~~~~~~--------~g~~--~~~~~LChG~aG~~~~ll~l~~~ 360 (423)
+++.++++++.+.+.+..+.+++ .|.. ..++|||+|+||+++.|++++..
T Consensus 759 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p 818 (825)
T cd04792 759 AAKAFGDEKLQELANSLAIKVLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAP 818 (825)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhCC
Confidence 99999999999988887766532 2222 25799999999999999998764
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.95 E-value=6e-26 Score=218.21 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=183.4
Q ss_pred CCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHh
Q psy3913 53 KIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAV 132 (423)
Q Consensus 53 ~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~ 132 (423)
..+.|+|+|.+|+++++.++.+. +.++++++.+.+.+. .+ .+.|+++|.+|++.++..+++.
T Consensus 37 ~~~~gl~~G~~Gi~~~l~~~~~~-----------~~~~~~~~~~~~~~~----~~--~~~dl~~G~aG~~~~ll~l~~~- 98 (321)
T cd04791 37 GSPPGLYDGRAGIAWVLIELGHP-----------ARAKALFDTLLDEPS----AN--LNIDLASGLAGIGLALLYFART- 98 (321)
T ss_pred CCCCccccChhhHHHHHHHcCCH-----------HHHHHHHHHHhcccc----cc--cCCccccchHHHHHHHHHHHhc-
Confidence 35789999999999999886432 123333333333221 23 5789999999998777888888
Q ss_pred CChhHHHHHHHHHHHHHHHHhh----cccc--CCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCcc
Q psy3913 133 GDKERSQCHFDMYTKLATHIKA----IDYV--KFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRS 206 (423)
Q Consensus 133 ~~~~~l~~~l~~~~~~~~~~~~----~~~~--~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~ 206 (423)
+++++++.+.+.++.+.+...+ ..|. .....++.+|.||++++++.+++.++++.+. +.+++.++..++....
T Consensus 99 ~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l-~~A~~~~~~~~~~~~~ 177 (321)
T cd04791 99 GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYL-ELAEEALDKELARAVV 177 (321)
T ss_pred CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHhhcc
Confidence 8888887777666666554321 1121 1234678999999999999999999886553 3455666655542110
Q ss_pred ccccccCCCCcceeec---CCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCC
Q psy3913 207 YSQANNLRCPLMYHYY---GTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYS 283 (423)
Q Consensus 207 ~~~~~~~~~~~~~~~~---~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~ 283 (423)
. +..|.|. +....+||||.+||+++++++++.++ ++.+.+.++++++.+.+. + |
T Consensus 178 ------~--~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~-d~~~~~~a~~~~~~~~~~----~-~--------- 234 (321)
T cd04791 178 ------D--DGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITG-DKRWRDEADGIAHAALSS----C-Y--------- 234 (321)
T ss_pred ------C--CCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhh----h-c---------
Confidence 0 0111111 23467899999999999999999987 788888888888777642 1 1
Q ss_pred CCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHh----C------C--CCCCCcccCchhhHH
Q psy3913 284 PTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEK----G------L--LKKGPGICHGVSGNG 351 (423)
Q Consensus 284 ~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~----g------~--~~~~~~LChG~aG~~ 351 (423)
.+ .+||||++|++.+|..+++.++++++.+.+.+..+.+.+. + . .+.+++||+|.||++
T Consensus 235 ------~~---~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~ 305 (321)
T cd04791 235 ------AN---PGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIEGPVFPGDQGLRISTDLATGTAGIL 305 (321)
T ss_pred ------cC---ccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCccccccCCccceeeccccccchHHHH
Confidence 12 3579999999999999999999999999999998877532 1 0 134689999999999
Q ss_pred HHHHHHHH
Q psy3913 352 YAFLLLYR 359 (423)
Q Consensus 352 ~~ll~l~~ 359 (423)
++|+++..
T Consensus 306 ~~ll~l~~ 313 (321)
T cd04791 306 LFLLRLLT 313 (321)
T ss_pred HHHHHHhc
Confidence 99999875
No 13
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.94 E-value=5.9e-26 Score=227.56 Aligned_cols=286 Identities=22% Similarity=0.293 Sum_probs=222.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhh
Q psy3913 22 VENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLA 101 (423)
Q Consensus 22 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~ 101 (423)
..+++.|++.+.++++.+...+.+.. .+.+.+.|+|.+|..|+++.++.. +.|. .....+.+.+..+....+
T Consensus 662 vtgk~~Y~~ia~~~L~~~~~sv~~~~----~~~~iga~~G~~g~~yal~~I~~~--~~~~--~l~~~~~~~i~~le~~v~ 733 (963)
T COG4403 662 VTGKDYYKEIAIKALQDSRKSVNNNL----NPINIGAFTGLSGYFYALWKIYSV--TRDN--YLIQSAENSIRHLEILVQ 733 (963)
T ss_pred hcChHHHHHHHHHHHHHHHHhhhhcc----CCcccccccccchhhhhhHHHHHh--cccH--HHHHHHHHHHHHHHHHHh
Confidence 36778999999999999999988743 457799999999999999999999 8876 666667777764444333
Q ss_pred hhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhcc-ccCCCCccccccchhHHHHHHHHH
Q psy3913 102 TKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAID-YVKFGGDEFLVGRAGYLAGIIWAE 180 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~d~l~G~aG~l~~ll~l~ 180 (423)
.+ ..+|+++|.+|++.++..+|+.+..++.++.++.....+.+.+...+ |. ..-..+-||.||++++++.++
T Consensus 734 ----~~--~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~s~-~~l~gfshg~sgi~~tL~~ly 806 (963)
T COG4403 734 ----KS--KDPDFINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDSSE-TVLLGFSHGASGIILTLLKLY 806 (963)
T ss_pred ----hc--cCcchhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccccc-ceecccccchHHHHHHHHHHH
Confidence 23 57999999999988888999999889999999998888887654332 22 345678899999999999999
Q ss_pred HHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceeecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHH
Q psy3913 181 RQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKET 260 (423)
Q Consensus 181 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~ 260 (423)
..++++. ..+.+..++..+|...+ ...+-||||++||+.+++.+.+... |+.+.+.++.+
T Consensus 807 ~~T~e~~-----l~~~i~e~~~~Er~~f~--------------~~~~~Wc~g~~gilv~rl~l~~~~~-de~i~~Ei~~~ 866 (963)
T COG4403 807 EATGEES-----LLKKIKELLSYERMKFS--------------DKFTRWCSGAPGILVSRLLLKKIYD-DESIDREIQQA 866 (963)
T ss_pred HhcCcHH-----HHHHHHHHHHHHHHHHH--------------HHHHHHhcCCcceeechhhhhhhcc-hHHHHHHHHHH
Confidence 9998753 33444444444432111 0146899999999999999988855 78888899999
Q ss_pred HHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHH--------H
Q psy3913 261 VDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVI--------W 332 (423)
Q Consensus 261 ~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~--------~ 332 (423)
+...+. +|. .++++ |||+.|++.+|..+++.+.|++.++.|.+.+..+ |
T Consensus 867 l~~~i~----~gl----------------gn~~~---Chgdfg~ie~l~~~a~~l~~~~l~es~~~~~~~~~~k~~~~g~ 923 (963)
T COG4403 867 LKTIIN----NGL----------------GNDSL---CHGDFGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGI 923 (963)
T ss_pred HHHHHh----ccC----------------CCccc---cccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccc
Confidence 988876 443 23444 9999999999999999999999999988776554 3
Q ss_pred HhCCC--CCCCcccCchhhHHHHHHHHHHHcCChH
Q psy3913 333 EKGLL--KKGPGICHGVSGNGYAFLLLYRLTKDEQ 365 (423)
Q Consensus 333 ~~g~~--~~~~~LChG~aG~~~~ll~l~~~t~~~~ 365 (423)
+.++. ..+.|||.|++|+||.|||+....-.|+
T Consensus 924 ~~~~~~~~~~~glm~GvtGigY~lLR~~~p~~vps 958 (963)
T COG4403 924 NQGLNHANESFGLMNGVTGIGYSLLRISSPKFVPS 958 (963)
T ss_pred cccCCCccchhHHHhhhHHHHHHHHHHhCcccCCc
Confidence 34443 3478999999999999999987654443
No 14
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.94 E-value=5.1e-25 Score=216.49 Aligned_cols=302 Identities=14% Similarity=0.101 Sum_probs=194.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHH-hhh
Q psy3913 24 NFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNV-LAT 102 (423)
Q Consensus 24 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~-~~~ 102 (423)
+++++++.++++++++++.+... . .+.|+|+|.+|++|++.++++.. ..++ ++++.+.+.+..+.+. ++.
T Consensus 19 ~~~~~~~~a~~~l~~~~~~l~~~-----~-~~~s~f~G~~Gi~~al~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~ 89 (382)
T cd04793 19 KDEGYWERVHQYLSKALNYLLSL-----G-YSSSLFSGAAGVAFALLILSDNG-KRYQ--ELLESLDELIKAIVRRRLED 89 (382)
T ss_pred cccchHHHHHHHHHHHHHHHHhC-----C-CCCcccccHHHHHHHHHHHccCc-HhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999987542 2 57899999999999999998731 3332 6777777776655432 211
Q ss_pred ----hccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc-c--cc-----------C----C
Q psy3913 103 ----KKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI-D--YV-----------K----F 160 (423)
Q Consensus 103 ----~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~-~--~~-----------~----~ 160 (423)
..... ..+|+++|.+|++.++..++ ..+.+....+.+.+..+++..... . |. . .
T Consensus 90 ~~~~~~~~~--~~yD~i~G~aGi~~~Ll~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (382)
T cd04793 90 AKSGEPPTP--TNYDVISGLSGIGRYLLLRH--EPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGH 165 (382)
T ss_pred HhcCCCCCC--CCCceeechHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCcc
Confidence 00122 56899999999977765554 122233333444444444332110 0 10 0 0
Q ss_pred CCccccccchhHHHHHHHHHHHh-CcccCcHHHHHHHHHHHHHcC-----ccccccccCCCCcc--e----eecCCcccc
Q psy3913 161 GGDEFLVGRAGYLAGIIWAERQL-GRQIMSLEDRTAICNALILSG-----RSYSQANNLRCPLM--Y----HYYGTEYLG 228 (423)
Q Consensus 161 ~~~d~l~G~aG~l~~ll~l~~~~-~~~~~~~~~i~~i~~~~~~~~-----~~~~~~~~~~~~~~--~----~~~~~~~~G 228 (423)
....+-||.+|+++.|..++... .++.. .+.+++.++.+.+.. ..|.... .+.. + ......+.+
T Consensus 166 ~~~G~aHG~aGi~~~L~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~~~ 241 (382)
T cd04793 166 INLGLAHGIAGPLALLALAKERGIRVDGQ-LEAIQKIIAWLDRWRLKNRKGPWWPGL---ITNREQIGGRPNNPNPFRDA 241 (382)
T ss_pred ccccchhcchHHHHHHHHHHHcCCCcCCh-HHHHHHHHHHHHHHHHhCCCCCCCccc---ccHHHHhccccccCCCCCCC
Confidence 12246688999998888877765 44332 345555555443311 0121100 0000 0 001124679
Q ss_pred cccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHH
Q psy3913 229 ACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLM 308 (423)
Q Consensus 229 ~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l 308 (423)
||||.+||+++|+.+++.++ ++.+.+.+.++++.+.+.. .+.|. ....+||||.+|++.+|
T Consensus 242 wChG~~Gi~~~l~~~~~~~~-~~~~~~~a~~~~~~~~~~~--~~~~~----------------~~~~~lChG~~G~~~~l 302 (382)
T cd04793 242 WCYGTPGIARALQLAGKALD-DQKLQEAAEKILKAALKDK--KQLSK----------------LISPTLCHGLAGLLFIF 302 (382)
T ss_pred CCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhCh--hhhcc----------------CCCCCcCccHHHHHHHH
Confidence 99999999999999999887 6778787777777665421 12210 11245799999999999
Q ss_pred HHHHHHhCcHhHHHHHHHHHHHHHHh----C---C-----------CCCCCcccCchhhHHHHHHHHHHHc
Q psy3913 309 AKAYLFWGEEKYLNSCIKCGEVIWEK----G---L-----------LKKGPGICHGVSGNGYAFLLLYRLT 361 (423)
Q Consensus 309 ~~~~~~~~~~~~~~~a~~~~~~~~~~----g---~-----------~~~~~~LChG~aG~~~~ll~l~~~t 361 (423)
.++++.++++++.+.+++..+.+.+. + + ...++|||.|.+|++++|++++...
T Consensus 303 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 303 YLLYKDTNTNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 99999999999999999888776431 1 1 1357999999999999999998744
No 15
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.93 E-value=1.8e-25 Score=217.80 Aligned_cols=309 Identities=20% Similarity=0.271 Sum_probs=197.5
Q ss_pred CCCCCCCCCC----------CcccchhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCC
Q psy3913 10 INRLDLNKGG----------SLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYA 79 (423)
Q Consensus 10 ~n~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~ 79 (423)
|++...|+|. ....+++++.+.++++++.+...+.... ..+.|+|+|.+|+++++..+++. .+
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~gl~~G~~Gi~~~l~~~~~~--~~ 74 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNP-----YDSIGLFSGLAGIAYALSYLSKR--LG 74 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC-------S--STTTSCHHHHHHHHHHCCC--TC
T ss_pred CCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcc-----CcCCcccCChHHHHHHHHHHHHh--cc
Confidence 4556666654 1235667899999999999988876532 22899999999999999999887 55
Q ss_pred CCcHHHH-HHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc---
Q psy3913 80 SEAPTYY-LKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI--- 155 (423)
Q Consensus 80 d~~~~~~-~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~--- 155 (423)
+. ... +.+..+.+.+.+... .+.....|+++|.+|+..++..+++.++++..++.+.+.++++++...+.
T Consensus 75 ~~--~~~~~~l~~~~~~i~~~~~----~~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~ 148 (355)
T PF05147_consen 75 DE--KYIEELLKRILNIIENSIS----NDSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPS 148 (355)
T ss_dssp HH--HHHHHHHHHHHHCHHHHHH----CT--GGCSTTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTC
T ss_pred ch--HHHHHHHHHHHHHHHHhhh----hcccccchhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccc
Confidence 43 222 222332222222221 12001289999999997777777877777776666666665555443321
Q ss_pred ------cc-cCCCCccccccchhHHHHHHHHH-HHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceeec-CCc-
Q psy3913 156 ------DY-VKFGGDEFLVGRAGYLAGIIWAE-RQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYY-GTE- 225 (423)
Q Consensus 156 ------~~-~~~~~~d~l~G~aG~l~~ll~l~-~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 225 (423)
.| .......+.||.+|+++++..++ +.+++++. .+.++++++.+.+.... .+..|+.. +..
T Consensus 149 ~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 219 (355)
T PF05147_consen 149 ENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEY-LKLIEQILNFLLKHFNT--------DDGGWPDNRNNSN 219 (355)
T ss_dssp CGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHH-HHCHHHHHHHHHHC--T--------GCCT--SECTHHH
T ss_pred cCCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhH-HHHHHHHHHHHHHhcCc--------ccCCCCCCCCccc
Confidence 11 11123457899999999998887 45554322 33455555555543211 01113311 111
Q ss_pred ---ccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCch
Q psy3913 226 ---YLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAP 302 (423)
Q Consensus 226 ---~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~ 302 (423)
..+||||.+||+++++.+.+.++ ++.+.+.++++++.+.+... .+ .++++ |||.+
T Consensus 220 ~~~~~~WC~G~~Gi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~l---CHG~a 277 (355)
T PF05147_consen 220 YKSRPSWCYGSPGILLALLKAYKILD-DEEYDEEAEQALESILQKGL---FL---------------NNPSL---CHGTA 277 (355)
T ss_dssp HHC--SSSSSHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHH-T---CT---------------TSS-S---TTSHH
T ss_pred cccccccccCcHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHccc---cC---------------CCCce---eCchH
Confidence 58999999999999999999987 78888888888877766211 11 24445 99999
Q ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCC----------CCCCCcccCchhhHHHHHHHHHHHcC
Q psy3913 303 GVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGL----------LKKGPGICHGVSGNGYAFLLLYRLTK 362 (423)
Q Consensus 303 Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~----------~~~~~~LChG~aG~~~~ll~l~~~t~ 362 (423)
|++.++..+++.++++++.+.+++..+.+.+... ...+.+|+.|.+|++++|+++.....
T Consensus 278 G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~ 347 (355)
T PF05147_consen 278 GILEILLDLYKYTGDEEYKELANKLIQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDK 347 (355)
T ss_dssp HHHHHHHHHHHHH--HCCHHHHHHHHHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGG
T ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999988877643211 14578999999999999998765443
No 16
>KOG2787|consensus
Probab=99.84 E-value=1.4e-19 Score=162.32 Aligned_cols=307 Identities=19% Similarity=0.168 Sum_probs=194.3
Q ss_pred CCCCCCCCCC----------CcccchhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCC
Q psy3913 10 INRLDLNKGG----------SLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYA 79 (423)
Q Consensus 10 ~n~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~ 79 (423)
+++...|.|- .....+......+.++|+.-.... .+....++-.|.+|+.-.-+.+++. .+
T Consensus 60 ~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~~-------~s~~~vTFLCG~aGv~avgAvia~~--l~ 130 (403)
T KOG2787|consen 60 VRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVAS-------RSSRRVTFLCGRAGVCAVGAVIAHK--LG 130 (403)
T ss_pred CcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-------cccCceEEECCCcchhHHHHHHHHH--hc
Confidence 5666777654 112344456666666666655321 1345789999999998888888887 66
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH-hhcccc
Q psy3913 80 SEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHI-KAIDYV 158 (423)
Q Consensus 80 d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~ 158 (423)
++ +-++ +.+........ .+.+ ....++-|.+|.++.+..+.+.+|.+...+..++.+.+.|... .+..-.
T Consensus 131 ~~--~~~~---~~l~~f~~l~~--~~~d--lp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k 201 (403)
T KOG2787|consen 131 EE--EELD---DCLARFLSLRL--CSSD--LPDELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKK 201 (403)
T ss_pred cH--HHHH---HHHHHHHhccc--CCcc--ccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 65 2222 22222222111 1234 5677899999997777788898988776666666666554321 110000
Q ss_pred CC----CCcc----ccccchhHHHHHHHHHHHhCcc---cCcHHHHHHHHHHHHHcCccccccccCCCCcceeecCCccc
Q psy3913 159 KF----GGDE----FLVGRAGYLAGIIWAERQLGRQ---IMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYL 227 (423)
Q Consensus 159 ~~----~~~d----~l~G~aG~l~~ll~l~~~~~~~---~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (423)
.. -.++ ...|.||++.+++++.....-+ ....+.++.-++.+++.. +++ .+-|..-.-..++.+
T Consensus 202 ~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~r--fps---GNyP~s~~~~~drLV 276 (403)
T KOG2787|consen 202 ENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNR--FPS---GNYPSSEGNKRDRLV 276 (403)
T ss_pred CCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHcc--CCC---CCCCcccCCCcceee
Confidence 00 0122 2456777777666665542211 112234555566666531 111 000100000124679
Q ss_pred ccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHH
Q psy3913 228 GACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYL 307 (423)
Q Consensus 228 G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~ 307 (423)
-||||++|+++.|.++++.++ ++++++.+.++.+-+-+ .|.. ..-++.|||.+|++++
T Consensus 277 hWcHGApGv~~~L~kAy~VF~-Eekyl~aa~ecadvVW~----rGlL-----------------kkg~GichGvaGNaYv 334 (403)
T KOG2787|consen 277 HWCHGAPGVAYTLAKAYQVFK-EEKYLEAAMECADVVWK----RGLL-----------------KKGVGICHGVAGNAYV 334 (403)
T ss_pred eeccCCchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH----hhhh-----------------hcCCcccccccCchhh
Confidence 999999999999999999998 67888877777665543 2321 1225569999999999
Q ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHHhCCC------CCCCcccCchhhHHHHHHHHHHHc
Q psy3913 308 MAKAYLFWGEEKYLNSCIKCGEVIWEKGLL------KKGPGICHGVSGNGYAFLLLYRLT 361 (423)
Q Consensus 308 l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~------~~~~~LChG~aG~~~~ll~l~~~t 361 (423)
|+.+|+.|+|.+|+..|.+.++.+.+.|+. ...++|+.|+||..+.|+++-..+
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~~~~~g~r~pDrpySLfeG~AG~v~~l~Dll~P~ 394 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDYGFSHGCRTPDRPYSLFEGVAGTVYLLLDLLDPE 394 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHhcccchhhHhhhhcChh
Confidence 999999999999999999999988776632 346899999999999998875543
No 17
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.74 E-value=0.0022 Score=59.86 Aligned_cols=235 Identities=12% Similarity=0.038 Sum_probs=131.2
Q ss_pred HHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCc-hHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy3913 69 LWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGD-AGIHAVLGVFYNAVGDKERSQCHFDMYTK 147 (423)
Q Consensus 69 l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~-aGi~~l~~~l~~~~~~~~~l~~~l~~~~~ 147 (423)
+++++.. |+|+ +|++.++.+.+..+.. .+. ....+... +|..+ .-+++.++++++++.+++....
T Consensus 45 v~~~~eA--T~d~--~yl~~l~~~~d~~i~~-----~g~---~~~~id~i~~g~~L--~~L~e~T~~~~Yl~~a~~~a~~ 110 (357)
T COG4225 45 VARAYEA--TGDA--EYLDYLKTWFDEQIDE-----GGL---PPRNIDHIAAGLTL--LPLYEQTGDPRYLEAAIKLASW 110 (357)
T ss_pred HHHHHHH--cCcH--HHHHHHHHHHHhhhcc-----CCC---CccchhhhccCcee--eehhhhhCCHHHHHHHHHHHHH
Confidence 4677777 8887 9999998888765542 111 11222222 23322 2458999999999888777665
Q ss_pred HHHHHh-hcc--ccCCCCcc--ccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCccee-e
Q psy3913 148 LATHIK-AID--YVKFGGDE--FLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYH-Y 221 (423)
Q Consensus 148 ~~~~~~-~~~--~~~~~~~d--~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~ 221 (423)
+..... +.. |-+...++ ++.|+-=...-++.+.+.++++++.++.+.+..... +...+ ....++|- |
T Consensus 111 l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~----~~l~D---p~TGL~YH~w 183 (357)
T COG4225 111 LVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHE----KYLRD---PETGLYYHGW 183 (357)
T ss_pred HhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHccC---CCcCceEEee
Confidence 554431 111 11111111 233432223345566667777655554444432211 11110 11122221 2
Q ss_pred cC-------Cc----ccccccchHHHHHHHhccccccCCCc----chHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCc
Q psy3913 222 YG-------TE----YLGACHGLSGILQVLLCEKNYVKSNP----DIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTD 286 (423)
Q Consensus 222 ~~-------~~----~~G~aHG~~GI~~~Ll~~~~~~~~~~----~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~ 286 (423)
.. .. ..=|+-|..=++.++..+.+.++.+. .+.+.++.-++.+++.|+++|.|-..+.+...
T Consensus 184 d~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~--- 260 (357)
T COG4225 184 DEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRP--- 260 (357)
T ss_pred ccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC---
Confidence 11 11 23377777777778777777766332 35556677788888888899999765543100
Q ss_pred cccccccccccccCchHHHHHHHHHHHH-hCcHhHHHHHHHHHHHHHH
Q psy3913 287 AKSAANELVHWCHGAPGVIYLMAKAYLF-WGEEKYLNSCIKCGEVIWE 333 (423)
Q Consensus 287 ~~~~~~~~~~WChG~~Gi~~~l~~~~~~-~~~~~~~~~a~~~~~~~~~ 333 (423)
.+.-- --|++|++++|++.... .-++++...++++.+.+.+
T Consensus 261 ---~sy~E---sSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~ 302 (357)
T COG4225 261 ---GSYLE---SSASAGFAYALLKGINLGILDPEYAPVAEKALDALLG 302 (357)
T ss_pred ---CCchh---hhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Confidence 11111 46899999999996543 3466667788888877654
No 18
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.57 E-value=0.013 Score=57.59 Aligned_cols=244 Identities=14% Similarity=0.020 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc---cccC----C-C--Cccc-cccchhHHHHHHHHHHHhCcccCcH
Q psy3913 122 HAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI---DYVK----F-G--GDEF-LVGRAGYLAGIIWAERQLGRQIMSL 190 (423)
Q Consensus 122 ~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~----~-~--~~d~-l~G~aG~l~~ll~l~~~~~~~~~~~ 190 (423)
+..++..++..++++.++.+.+.+.-+.+..... .|.. . . .... +...+-.+.++..+++.++++.+.
T Consensus 59 i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l- 137 (384)
T cd00249 59 VYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEAR- 137 (384)
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHH-
Confidence 3444567777888887776666655555543321 1210 0 1 1122 667788899999999999876554
Q ss_pred HHHHHHHHHHHHcCccccccccCCCCccee-e-c-CCcccccccchHH-HHHHHhccccccCCCcchHHHHHHHHHHHHH
Q psy3913 191 EDRTAICNALILSGRSYSQANNLRCPLMYH-Y-Y-GTEYLGACHGLSG-ILQVLLCEKNYVKSNPDIEKDIKETVDFLLK 266 (423)
Q Consensus 191 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~G~aHG~~G-I~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~ 266 (423)
+.++++++.+.+... .. . +..+. . . +...-+ +-... .+.+++.+.+.++ ++.+.+.+++.++.+.+
T Consensus 138 ~~A~~~~~~l~~~~~--~~-~----g~~~~~~~~~~~~~~~--~~~~~h~~~all~l~~~tg-d~~~~~~A~~l~~~~~~ 207 (384)
T cd00249 138 ALAEETIDLLERRFW--ED-H----PGAFDEADPGTPPYRG--SNPHMHLLEAMLAAYEATG-EQKYLDRADEIADLILD 207 (384)
T ss_pred HHHHHHHHHHHHHhc--cC-C----CcccCCCCCCCCCCCC--CChhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 356666666655321 00 0 00110 0 0 011111 11222 1245777777787 67888889888888887
Q ss_pred cc-C-CCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCCCCCCccc
Q psy3913 267 LQ-M-PNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGIC 344 (423)
Q Consensus 267 ~~-~-~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LC 344 (423)
.. + ++|.++.......++. ........|-.+..=.+..+++++++++++++.+.++++.+.+.+.+.-...-+++
T Consensus 208 ~~~~~~~G~~~e~~~~~~~~~---~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~ 284 (384)
T cd00249 208 RFIDAESGVVREHFDEDWNPY---NGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLY 284 (384)
T ss_pred HhcCcccCeEEEEECCCCCCC---cCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEE
Confidence 43 2 3554432111100000 00011111222222234567788888999999999999999887766421112333
Q ss_pred C-ch----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q psy3913 345 H-GV----------------SGNGYAFLLLYRLTKDEQYLHKAYLFANFMLS 379 (423)
Q Consensus 345 h-G~----------------aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~ 379 (423)
. .. +=.+.+++.+++.|+|++|.+++.++.+++..
T Consensus 285 ~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~ 336 (384)
T cd00249 285 YSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWR 336 (384)
T ss_pred EeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3 11 12345578889999999999999999888753
No 19
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.044 Score=56.25 Aligned_cols=328 Identities=18% Similarity=0.177 Sum_probs=171.2
Q ss_pred chHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCC------------CCCccc-ccCchH-------
Q psy3913 61 GNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCI------------TDYSAF-LCGDAG------- 120 (423)
Q Consensus 61 G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~------------~~~~~~-~~G~aG------- 120 (423)
|.+|..-.+..+.+. +.++++++.+.+.++++.+............ ...+|- ++|..|
T Consensus 135 g~pGf~~lL~~i~~~--W~edr~~~~~~a~~~~~~l~~~~~~~~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~ 212 (667)
T COG1331 135 GRPGFKQLLEAIRET--WREDREELLQSAERVLEALEGLARPSAGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPP 212 (667)
T ss_pred CCcCHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCCh
Confidence 567888888888877 7655567888887777655532110000000 012221 223222
Q ss_pred -HHHHHHHHHHHhCChhHHHHHHHHHHHHHHH-Hhh------------ccccCCCCccccccchhHHHHHHHHHHHhCcc
Q psy3913 121 -IHAVLGVFYNAVGDKERSQCHFDMYTKLATH-IKA------------IDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQ 186 (423)
Q Consensus 121 -i~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~-~~~------------~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~ 186 (423)
.+.++...+...+++..++.+...++.+..- +-+ ..|.-.+-...++=.|..+.++...+..++++
T Consensus 213 ~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~ 292 (667)
T COG1331 213 HLLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDD 292 (667)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 2333334344567766555555555443322 111 13543333335778899999999999999987
Q ss_pred cCcHHHHHHHHHHHHHcCc-----ccccc---ccCCCCcceeecC---CcccccccchHHHHHHHhccccc---------
Q psy3913 187 IMSLEDRTAICNALILSGR-----SYSQA---NNLRCPLMYHYYG---TEYLGACHGLSGILQVLLCEKNY--------- 246 (423)
Q Consensus 187 ~~~~~~i~~i~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~---~~~~G~aHG~~GI~~~Ll~~~~~--------- 246 (423)
.+ ...++++++.+++.-. .++.. .......+|.|.. +..+| =.+.+..-...+.+.
T Consensus 293 ~y-~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg---~d~~~~~~~f~vs~~GnfeGrnvL 368 (667)
T COG1331 293 LY-RRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG---EDAELACKYFDVSEEGNFEGRNVL 368 (667)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc---ccHHHHHHHcccCCCCCcCCceee
Confidence 55 3467777777765211 11111 1112233455531 11122 111111111111110
Q ss_pred -----cCC-CcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhH
Q psy3913 247 -----VKS-NPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKY 320 (423)
Q Consensus 247 -----~~~-~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~ 320 (423)
... .++..+.++.+.+.|+..+... --|. + ....+..| +|. ++.+|+.++++++++++
T Consensus 369 ~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R-~~P~-~-----------Ddkvlt~w-Ngl--mi~aLa~a~~~~~d~~~ 432 (667)
T COG1331 369 HVPGPLEEAIEEAEEKLERAREKLLAAREKR-KQPS-R-----------DDKVLTDW-NGL--MIAALAEAGRVLGDPEY 432 (667)
T ss_pred cccCchhhhhhhhHHHHHHHHHHHHHHHHhC-CCCC-C-----------Ccceeecc-HHH--HHHHHHHHHHHcCChHH
Confidence 000 0123334455555555533211 1111 1 12334444 222 45669999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-CCCCcccCchh----------hHHHHHHHHHHHcCChHHHHHHHHHHHHhhchhhhhc----
Q psy3913 321 LNSCIKCGEVIWEKGLL-KKGPGICHGVS----------GNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRN---- 385 (423)
Q Consensus 321 ~~~a~~~~~~~~~~g~~-~~~~~LChG~a----------G~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~---- 385 (423)
.+.|+++.+.+.+.-.. +--....+|.+ =.+..++.+|+.|++.+|++.|.++++.++..-|...
T Consensus 433 l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~ 512 (667)
T COG1331 433 LEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDEGGFY 512 (667)
T ss_pred HHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999999988654321 01123333333 3567889999999999999999999998765433221
Q ss_pred ------CCCCCCCCccccch-----HHHHHHHHHcc
Q psy3913 386 ------ARMPDAPFSLYEGL-----AGTACFFIDLM 410 (423)
Q Consensus 386 ------~~~~~~~~gl~~G~-----aGi~~~Ll~~~ 410 (423)
.....++...+.|. |=++..|+++.
T Consensus 513 ~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls 548 (667)
T COG1331 513 DTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLS 548 (667)
T ss_pred cCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 11122344555554 66677777664
No 20
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.20 E-value=0.038 Score=53.39 Aligned_cols=240 Identities=16% Similarity=0.097 Sum_probs=129.3
Q ss_pred HHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHH
Q psy3913 65 VGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDM 144 (423)
Q Consensus 65 i~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~ 144 (423)
....+..+++. ++|+ +|++.+.++.+........ . ...+-. ..|..++ .+++.++++++.+.+++.
T Consensus 30 ~~~gl~~~~~~--tgd~--~~~~~a~~~~~~~~~~~~~----~--~~~d~~--~~g~~~~--~~y~~t~d~~y~~~~~~~ 95 (336)
T PF07470_consen 30 FWYGLLEAYEY--TGDE--RYLDYAERWADRFIEEDGS----D--YNLDDH--DIGFLLL--DLYERTGDEKYKDAAIQA 95 (336)
T ss_dssp HHHHHHHHHHH--H--H--HHHHHHHHHHHHHHHHHHT----T--TSCCGT--THHHHHH--HHHHHH-THHHHHHHHHH
T ss_pred HHHHHHHHHHH--HCCH--HHHHHHHHHHHHHHhccCC----c--cCCchh--hhHHHHH--HHHHHhCCHHHHHHHHHH
Confidence 34446677777 8886 8999999988877765431 1 111111 2344333 368889998877777766
Q ss_pred HHHHHHHHhh--cc--ccCC--CCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcc
Q psy3913 145 YTKLATHIKA--ID--YVKF--GGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLM 218 (423)
Q Consensus 145 ~~~~~~~~~~--~~--~~~~--~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 218 (423)
++.++..... .+ |... +..-++-+.--.+..+......++++.+.+.+++++.... +. ..+ ....+.
T Consensus 96 a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~-~~---~~d---~~tGl~ 168 (336)
T PF07470_consen 96 ADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTR-KY---LYD---PETGLY 168 (336)
T ss_dssp HHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHH-HH---HB----TTTSSB
T ss_pred HHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHH-Hh---ccC---CCCCce
Confidence 6656654221 11 1111 1111344444455667777778888655444433332211 11 000 011111
Q ss_pred e-ee--cCCc---ccccccchHHHHHHHhccccccCC----CcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccc
Q psy3913 219 Y-HY--YGTE---YLGACHGLSGILQVLLCEKNYVKS----NPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAK 288 (423)
Q Consensus 219 ~-~~--~~~~---~~G~aHG~~GI~~~Ll~~~~~~~~----~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~ 288 (423)
+ .| .+.. ...|+-|.+=.++++..+.+.++. .+.+++.+++.++.+.+.|.++|.|+.......+.
T Consensus 169 ~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~---- 244 (336)
T PF07470_consen 169 YHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPG---- 244 (336)
T ss_dssp ESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTT----
T ss_pred eeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCC----
Confidence 1 11 1111 134777766666666666655542 14566677777888877777899996544321100
Q ss_pred cccccccccccCchHHHHHHHHHHH--HhCcHhHHHHHHHHHHHHHHh
Q psy3913 289 SAANELVHWCHGAPGVIYLMAKAYL--FWGEEKYLNSCIKCGEVIWEK 334 (423)
Q Consensus 289 ~~~~~~~~WChG~~Gi~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~ 334 (423)
...+ --|++.++..|++... .++++++.+.++++.+.+.++
T Consensus 245 ~~~e-----tSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 245 NYRE-----TSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp S-BE-----HHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHC
T ss_pred Cccc-----HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhC
Confidence 0112 2367777777776433 245789999999999998876
No 21
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.10 E-value=0.2 Score=49.26 Aligned_cols=256 Identities=12% Similarity=-0.020 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccc--cC------c-----hHHHHHHHHH
Q psy3913 62 NLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFL--CG------D-----AGIHAVLGVF 128 (423)
Q Consensus 62 ~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~--~G------~-----aGi~~l~~~l 128 (423)
.+=.+++|+..+.. ++++ ++++.|.+.++-+.+.... .++-.-+..+ .| . +=++..++.+
T Consensus 55 ~ar~i~~~a~a~~~--~~~~--~~l~~A~~~~~fl~~~~~d---~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~ 127 (384)
T cd00249 55 QARQVYCFAVAYLL--GWRP--EWLEAAEHGLEYLDRHGRD---PDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQA 127 (384)
T ss_pred ecHHHHHHHHHHHh--cCCh--hHHHHHHHHHHHHHHhCcC---CCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHH
Confidence 45578889999988 7775 8999888888777765421 1100000001 11 1 1112233567
Q ss_pred HHHhCChhHHHHHHHHHHHHHHHHhh-cc--ccCC----CCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHH
Q psy3913 129 YNAVGDKERSQCHFDMYTKLATHIKA-ID--YVKF----GGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALI 201 (423)
Q Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~~~~----~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~ 201 (423)
++.++++++++.+.+.++.+.+.... .. +... ....-..+..+.+.+++.+...++++.+. +.++++++.+.
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~-~~A~~l~~~~~ 206 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYL-DRADEIADLIL 206 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHH
Confidence 88889988887777766655554321 10 1000 11111334555577888888888876543 35566666555
Q ss_pred HcCc------cccccccCCCCcceeecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHcc-C-CCCC
Q psy3913 202 LSGR------SYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQ-M-PNGN 273 (423)
Q Consensus 202 ~~~~------~~~~~~~~~~~~~~~~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~-~-~~g~ 273 (423)
+... .+........+. +.......--+|..- .+..++.+.+.++ ++.+.+.+++.+++..+.. + +.|.
T Consensus 207 ~~~~~~~~G~~~e~~~~~~~~~--~~~~~~~~~Pgh~~e-~a~~ll~l~~~~~-~~~~~~~a~~~~~~~~~~~~d~~~G~ 282 (384)
T cd00249 207 DRFIDAESGVVREHFDEDWNPY--NGDKGRHQEPGHQFE-WAWLLLRIASRSG-QAWLIEKARRLFDLALALGWDPERGG 282 (384)
T ss_pred HHhcCcccCeEEEEECCCCCCC--cCcCCCcCCCchHHH-HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhCcCccCCC
Confidence 4321 100000000000 000001122334332 4667778888887 6789999999999988753 3 3455
Q ss_pred CCC-CCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCC
Q psy3913 274 FPA-DLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGL 336 (423)
Q Consensus 274 wp~-~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~ 336 (423)
|.. .......+ ..+...-|++.-.-.+ ++.+++.++|+++.+.++++.+.+++..+
T Consensus 283 ~~~~~~~~~~~~-----~~~~~~~w~~~E~~~a--~~~l~~~tgd~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 283 LYYSFLDDGGLL-----EDDDKRWWPQTEALKA--ALALAGITGDERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred EEEeeECCCCCc-----ccccccccHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 544 22211100 1233456886655555 77788899999999999999999887554
No 22
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.99 E-value=0.0058 Score=62.67 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=89.1
Q ss_pred cchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCC---CCCCccCCCCCccccccccc-c----ccccCch
Q psy3913 231 HGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNF---PADLKELYSPTDAKSAANEL-V----HWCHGAP 302 (423)
Q Consensus 231 HG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~w---p~~~~~~~~~~~~~~~~~~~-~----~WChG~~ 302 (423)
|=..|.+.++ ..++ |+++++.+...++.+.+.|.++|.. +...... ..... . -||.|-
T Consensus 64 ~wl~a~a~~~----~~~~-D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~--------~~~~w~~~~he~Y~~~~- 129 (520)
T PF07944_consen 64 KWLEAAAYAY----AYTG-DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFN--------PDDRWAPDMHELYCLGK- 129 (520)
T ss_pred HHHHHHHHHH----HHCC-CHHHHHHHHHHHHHHHHhccCCceecccccccccc--------cccCCCCCccceehHhH-
Confidence 4345554444 3444 7889999999999999998888742 2221000 01111 1 245443
Q ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHh--CCCCC--CCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy3913 303 GVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEK--GLLKK--GPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFM 377 (423)
Q Consensus 303 Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~ 377 (423)
++..+...++.+++++.++.+.+.++.+.+. .+... ...+..|-.|+-.+|.+||+.|+|++|++.|++|.+.-
T Consensus 130 -ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 130 -LLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQR 207 (520)
T ss_pred -HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3455788889999999999999999988321 11100 12344477888899999999999999999999988753
No 23
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.83 E-value=0.074 Score=54.61 Aligned_cols=184 Identities=15% Similarity=0.002 Sum_probs=108.2
Q ss_pred cccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceeecCCcccccccchHHHHHHHhcccc
Q psy3913 166 LVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKN 245 (423)
Q Consensus 166 l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~GI~~~Ll~~~~ 245 (423)
++...+++.+++..++.+++++.+ +.+.++++.+.+.-..+.. .+. ..-+.=|-.||..+|..+++
T Consensus 124 ~Y~~~~ll~gl~~~y~~tG~~~~L-~v~~k~ad~~~~~~~~~~~-----~~~--------~~~~~~~~~~i~~~l~~LY~ 189 (520)
T PF07944_consen 124 LYCLGKLLEGLIDYYEATGNERAL-DVATKLADWVYRRLSRLGP-----EPG--------QKMGYPEHGGINEALVRLYE 189 (520)
T ss_pred eehHhHHHHHHHHHHHHHCcHHHH-HHHHHHHHHHHHHhccCCH-----HHh--------hcccccccchHHHHHHHHHH
Confidence 556678889999999999987554 3666777777321111110 010 01122255689999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHccCCCCCCC--CCCccCCCCCccccccccccccccCc--hHHHHHHHHHHHHhCcHhHH
Q psy3913 246 YVKSNPDIEKDIKETVDFLLKLQMPNGNFP--ADLKELYSPTDAKSAANELVHWCHGA--PGVIYLMAKAYLFWGEEKYL 321 (423)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp--~~~~~~~~~~~~~~~~~~~~~WChG~--~Gi~~~l~~~~~~~~~~~~~ 321 (423)
.++ ++.+++.++..++.- +.+| ........ ...+...+..|.. .=.....+++|+.++|++++
T Consensus 190 ~Tg-d~~yL~lA~~f~~~~-------~~~~~~~~~~~d~~-----~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~ 256 (520)
T PF07944_consen 190 ITG-DERYLDLAEYFVDQR-------GFDPYDLAYGQDHL-----PGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYL 256 (520)
T ss_pred HhC-CHHHHHHHHHHHHHh-------CCCCCchhhcCccC-----CCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHH
Confidence 999 677777665544321 2222 00000000 0001112234443 11112345788889999999
Q ss_pred HHHHHHHHHHHHh-CCC------C----------C-----CCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy3913 322 NSCIKCGEVIWEK-GLL------K----------K-----GPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANF 376 (423)
Q Consensus 322 ~~a~~~~~~~~~~-g~~------~----------~-----~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 376 (423)
+.+++..+.+.++ ... . . ..+=.|.+.+......+|.+.|+|.+|.+..++.+-.
T Consensus 257 ~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~lyN 333 (520)
T PF07944_consen 257 DAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERALYN 333 (520)
T ss_pred HHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhc
Confidence 9999998877542 110 0 0 0123456777888888999999999999888876543
No 24
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.63 E-value=0.17 Score=47.55 Aligned_cols=225 Identities=13% Similarity=0.042 Sum_probs=120.3
Q ss_pred cchhHHHHHHHHHHHHHHHhC-CCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhh
Q psy3913 23 ENFTVWKEEADKIIQSVLINV-DANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLA 101 (423)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~ 101 (423)
..+++|.+.+...++..+..- .+. ..+=+=.+|. .|.-+++. |+++ +|++.+.++.+.+.....
T Consensus 52 T~d~~yl~~l~~~~d~~i~~~g~~~---------~~id~i~~g~--~L~~L~e~--T~~~--~Yl~~a~~~a~~l~~~~R 116 (357)
T COG4225 52 TGDAEYLDYLKTWFDEQIDEGGLPP---------RNIDHIAAGL--TLLPLYEQ--TGDP--RYLEAAIKLASWLVHEPR 116 (357)
T ss_pred cCcHHHHHHHHHHHHhhhccCCCCc---------cchhhhccCc--eeeehhhh--hCCH--HHHHHHHHHHHHHhhCcc
Confidence 577899999998888877653 221 1111112333 35566777 8886 999998888776665432
Q ss_pred hhccCC--C-CCCcc--cccCc-hHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc-------cccCCC-------
Q psy3913 102 TKKHRC--I-TDYSA--FLCGD-AGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI-------DYVKFG------- 161 (423)
Q Consensus 102 ~~~~~~--~-~~~~~--~~~G~-aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~------- 161 (423)
++ .+. | ...+. ...|+ .|. .+++.+.+.++++++.+.++.++.-......+. .|....
T Consensus 117 t~-eG~f~H~~~~p~Q~W~DtL~Ma~-~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~ 194 (357)
T COG4225 117 TK-EGGFQHKVKYPHQMWLDTLYMAG-LFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANN 194 (357)
T ss_pred cC-CCccccccCchhHhhhcchhhhh-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccc
Confidence 11 110 0 00000 11222 121 344677889999999999888775444332221 232111
Q ss_pred Ccc--ccccc--hhHHHHHHHHHHHhCcccCc----HHHHHHHHHHHHHcCccccccccCCCCcceeec-C--Ccccccc
Q psy3913 162 GDE--FLVGR--AGYLAGIIWAERQLGRQIMS----LEDRTAICNALILSGRSYSQANNLRCPLMYHYY-G--TEYLGAC 230 (423)
Q Consensus 162 ~~d--~l~G~--aG~l~~ll~l~~~~~~~~~~----~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~G~a 230 (423)
..+ .+.|+ +=++.++..+...+..+.-. .+.+.+.++.+++..+ ...+++.-. + ..+.-=+
T Consensus 195 ~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd--------e~GlW~tiLDd~~~~sy~Es 266 (357)
T COG4225 195 ESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD--------ESGLWHTILDDGRPGSYLES 266 (357)
T ss_pred cCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc--------cccchhhhhccCCCCCchhh
Confidence 111 22222 22334444444444433212 2233444444444322 111111110 1 1122235
Q ss_pred cchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCC
Q psy3913 231 HGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNG 272 (423)
Q Consensus 231 HG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g 272 (423)
-|.+||+++|++.......++++...++++++.++....+.|
T Consensus 267 SaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g 308 (357)
T COG4225 267 SASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEG 308 (357)
T ss_pred hHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccccc
Confidence 699999999999776665567777899999999999765433
No 25
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=96.61 E-value=0.004 Score=57.71 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=81.6
Q ss_pred hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccC-chHHHHHHHHH
Q psy3913 233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHG-APGVIYLMAKA 311 (423)
Q Consensus 233 ~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG-~~Gi~~~l~~~ 311 (423)
..--+.+|++++..++ ++.+.+.+.++++++++.|.++|.||-..+... .-.....+=-+ ..+++.+|..+
T Consensus 41 T~~ei~fLa~~y~~t~-d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~-------~Y~~~ITfNDdam~~vl~lL~~v 112 (289)
T PF09492_consen 41 TTTEIRFLARVYQATK-DPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRG-------GYHDHITFNDDAMVNVLELLRDV 112 (289)
T ss_dssp THHHHHHHHHHHHHCG--HHHHHHHHHHHHHHHHHS-TTS--BSECS--S-------GGGGSEE-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCC-------CCCCceEEccHHHHHHHHHHHHH
Confidence 4455688899998887 789999999999999999999999986654311 00001111222 34555555555
Q ss_pred HHHhCcH---------hHHHHHHHHHHHHHHhCC-----------------C-------CCCCcccCch-hhHHHHHHHH
Q psy3913 312 YLFWGEE---------KYLNSCIKCGEVIWEKGL-----------------L-------KKGPGICHGV-SGNGYAFLLL 357 (423)
Q Consensus 312 ~~~~~~~---------~~~~~a~~~~~~~~~~g~-----------------~-------~~~~~LChG~-aG~~~~ll~l 357 (423)
+.-.++- ++.+++.++++++++.-+ + -.-++||-+- +|+..+|+++
T Consensus 113 ~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~ 192 (289)
T PF09492_consen 113 AEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSL 192 (289)
T ss_dssp HCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTS
T ss_pred HhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcC
Confidence 5433332 566667777777754211 0 1247899774 5788888888
Q ss_pred HHHcCChHHHHHHHHHHHHh
Q psy3913 358 YRLTKDEQYLHKAYLFANFM 377 (423)
Q Consensus 358 ~~~t~~~~~~~~a~~~~~~~ 377 (423)
++.+ ++++......+.|+
T Consensus 193 ~~ps--~~v~~aI~~AvaWl 210 (289)
T PF09492_consen 193 PNPS--PEVLAAIEAAVAWL 210 (289)
T ss_dssp SS----HHHHHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHHHHHH
Confidence 8777 77877777677776
No 26
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.029 Score=55.13 Aligned_cols=137 Identities=23% Similarity=0.191 Sum_probs=93.7
Q ss_pred cccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCC---CCCCCccCCCCCccccccccccccccCc--
Q psy3913 227 LGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGN---FPADLKELYSPTDAKSAANELVHWCHGA-- 301 (423)
Q Consensus 227 ~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~---wp~~~~~~~~~~~~~~~~~~~~~WChG~-- 301 (423)
..+.|=+.-++++|..-. |+.+.+.|..+++-+-+.|+++|. |-..... .....-..|||=.
T Consensus 66 sdlgkwlea~A~~l~~~~-----dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~p--------e~Rw~nlr~~HelY~ 132 (589)
T COG3533 66 SDLGKWLEAAAYSLANKG-----DPELEKRIDEVVEELARAQDEDGYLGGWFQADFP--------EERWGNLRPNHELYC 132 (589)
T ss_pred ccHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhhccCCcccceeeccCc--------hhhhhccccchHHHH
Confidence 356666777777776533 677888899999999998988764 5322211 1122335788863
Q ss_pred hHHH-HHHHHHHHHhCcHhHHHHHHHHHHHHHH-hCCC-CCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy3913 302 PGVI-YLMAKAYLFWGEEKYLNSCIKCGEVIWE-KGLL-KKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFM 377 (423)
Q Consensus 302 ~Gi~-~~l~~~~~~~~~~~~~~~a~~~~~~~~~-~g~~-~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~ 377 (423)
+|-+ ..+...++.++...+++.+.+.++.+.. .|-. .+-.+. +|-.|+-.+|.++|++|++++|++.|++|...-
T Consensus 133 aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~-~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~r 210 (589)
T COG3533 133 AGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGY-CGHPEIELALAELYRLTGDQRYLDLARRFIHQR 210 (589)
T ss_pred hHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCccccccccc-cCCCchhHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 2222 2244456788999999998888887743 1221 222344 477889999999999999999999999988764
No 27
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.38 E-value=0.029 Score=52.14 Aligned_cols=136 Identities=14% Similarity=0.099 Sum_probs=85.8
Q ss_pred chHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCcccccccccccccc-CchHHHHHHHH
Q psy3913 232 GLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCH-GAPGVIYLMAK 310 (423)
Q Consensus 232 G~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WCh-G~~Gi~~~l~~ 310 (423)
+..--+..|++++..++ ++.+.+.+.++++|+++.|.++|.||-..+... .-.....+|- +...++.+|..
T Consensus 45 aT~~e~~fLa~~y~~t~-d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-------~Y~~~ITfND~am~~vl~lL~~ 116 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEK-NAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-------GYSDAITYNDNAMVNVLTLLDD 116 (290)
T ss_pred cHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-------CcccccccCcHHHHHHHHHHHH
Confidence 34456678888888888 789999999999999999999999986544210 0001112232 24556666666
Q ss_pred HHHHhC---------cHhHHHHHHHHHHHHHHhC-----CC-------------------CCCCcccCch-hhHHHHHHH
Q psy3913 311 AYLFWG---------EEKYLNSCIKCGEVIWEKG-----LL-------------------KKGPGICHGV-SGNGYAFLL 356 (423)
Q Consensus 311 ~~~~~~---------~~~~~~~a~~~~~~~~~~g-----~~-------------------~~~~~LChG~-aG~~~~ll~ 356 (423)
++.... .+++...+.++++++.+.- .. -.-++||-+. +|+..+|+.
T Consensus 117 i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~ 196 (290)
T TIGR02474 117 IANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMT 196 (290)
T ss_pred HHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhc
Confidence 554211 1467777788888774311 11 0246787664 567777776
Q ss_pred HHHHcCChHHHHHHHHHHHHh
Q psy3913 357 LYRLTKDEQYLHKAYLFANFM 377 (423)
Q Consensus 357 l~~~t~~~~~~~~a~~~~~~~ 377 (423)
+.+.+ ++++......++|+
T Consensus 197 ~~~ps--~~i~~ai~~A~~W~ 215 (290)
T TIGR02474 197 QPNPS--AEIKEAIRAGVAWF 215 (290)
T ss_pred CCCCC--HHHHHHHHHHHHHH
Confidence 66444 57776666666665
No 28
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=96.30 E-value=0.01 Score=58.05 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=80.4
Q ss_pred HHHHHhccccccCCCc-----chHHHHHHHHHHHHHccCC----CCC-CCCCCccCCCCCccccccccccccccCchHHH
Q psy3913 236 ILQVLLCEKNYVKSNP-----DIEKDIKETVDFLLKLQMP----NGN-FPADLKELYSPTDAKSAANELVHWCHGAPGVI 305 (423)
Q Consensus 236 I~~~Ll~~~~~~~~~~-----~~~~~i~~~~~~l~~~~~~----~g~-wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~ 305 (423)
++++++.+++.++ ++ .+++.++...+++...-++ .|. |-....+ .......-| .....+
T Consensus 93 ~~la~l~aye~t~-~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~---------~~~~~Kna~-sN~~~~ 161 (370)
T PF03663_consen 93 WALALLRAYELTG-DQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTN---------SGYDYKNAI-SNGPAA 161 (370)
T ss_dssp HHHHHHHHHHHH---H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET-------------TEEEEEEHH-HHHHHH
T ss_pred HHHHHHHHHHhhC-CCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccC---------CCCCccccc-chHHHH
Confidence 6788999999998 67 8999999999999865442 233 5311000 011111123 222233
Q ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCC-CCCCcccCch-----------------hhH-HHHHHHHHHHcCCh-H
Q psy3913 306 YLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL-KKGPGICHGV-----------------SGN-GYAFLLLYRLTKDE-Q 365 (423)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~LChG~-----------------aG~-~~~ll~l~~~t~~~-~ 365 (423)
.+.+|++++++++.|++.|+++.+-+.+.++. ....-++.|+ .|+ +..+..||+.|+++ .
T Consensus 162 ~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~ 241 (370)
T PF03663_consen 162 QLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQT 241 (370)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-H
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccH
Confidence 44778899999999999999998876553443 1112223332 232 46778899999877 9
Q ss_pred HHHHHHHHHHHhhch
Q psy3913 366 YLHKAYLFANFMLSD 380 (423)
Q Consensus 366 ~~~~a~~~~~~~~~~ 380 (423)
|+++|.++++..+..
T Consensus 242 yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 242 YLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 29
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=94.78 E-value=1.1 Score=43.13 Aligned_cols=227 Identities=11% Similarity=0.019 Sum_probs=118.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhh
Q psy3913 23 ENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLAT 102 (423)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~ 102 (423)
..++++.+.+.+.++..+....+.. .+-+=..|..+ ..+++. ++++ +|++.+.+..+.+++...+
T Consensus 41 tgd~~~~~~a~~~~~~~~~~~~~~~---------~~d~~~~g~~~--~~~y~~--t~d~--~y~~~~~~~a~~~l~~~~~ 105 (336)
T PF07470_consen 41 TGDERYLDYAERWADRFIEEDGSDY---------NLDDHDIGFLL--LDLYER--TGDE--KYKDAAIQAADWLLARRPR 105 (336)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTT---------SCCGTTHHHHH--HHHHHH--H-TH--HHHHHHHHHHHHHHHTSCB
T ss_pred HCCHHHHHHHHHHHHHHHhccCCcc---------CCchhhhHHHH--HHHHHH--hCCH--HHHHHHHHHHHHHHHhCCC
Confidence 4567899999999998888653311 11111334443 447777 8875 8999888888766654321
Q ss_pred hccCC--C---CCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc-------cccCCCC---cc--c
Q psy3913 103 KKHRC--I---TDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI-------DYVKFGG---DE--F 165 (423)
Q Consensus 103 ~~~~~--~---~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~---~d--~ 165 (423)
..++. + ...--.+.+..=...+++..++.+|++++++.+++++....+...+. .|..... .+ +
T Consensus 106 ~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~W 185 (336)
T PF07470_consen 106 TSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFW 185 (336)
T ss_dssp ECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--B
T ss_pred CCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccC
Confidence 00000 0 01111233332234555677899999999999998887766654321 1111111 12 3
Q ss_pred cccchhHHHHHHHHHHHhCcccC----cHHHHHHHHHHHHHcCccccccccCCCCcceeec--CCc--ccccccchHHHH
Q psy3913 166 LVGRAGYLAGIIWAERQLGRQIM----SLEDRTAICNALILSGRSYSQANNLRCPLMYHYY--GTE--YLGACHGLSGIL 237 (423)
Q Consensus 166 l~G~aG~l~~ll~l~~~~~~~~~----~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~G~aHG~~GI~ 237 (423)
--|.+=.++++..+++.+++... ..+..+++++.+.+..+ ... .|.|. ... ...=+-|.+.++
T Consensus 186 sRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~--------~~G-~w~~~~~~~~~~~~~etSatA~~a 256 (336)
T PF07470_consen 186 SRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD--------EDG-LWYQDLDDPDPGNYRETSATAMFA 256 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST--------TTS-BEBSBTTTTTTTS-BEHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC--------CCC-CcceecCCCCCCCcccHHHHHHHH
Confidence 33444456666666666543211 12233444444433211 111 22221 111 122234677777
Q ss_pred HHHhccccccCC-CcchHHHHHHHHHHHHHc-cCCCCC
Q psy3913 238 QVLLCEKNYVKS-NPDIEKDIKETVDFLLKL-QMPNGN 273 (423)
Q Consensus 238 ~~Ll~~~~~~~~-~~~~~~~i~~~~~~l~~~-~~~~g~ 273 (423)
.+|++.....-. ++.+.+.++++++.+.+. ..++|.
T Consensus 257 ~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 257 YGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 888763322221 467888999999999997 556665
No 30
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=3.1 Score=43.14 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=85.1
Q ss_pred CCCCcccchHH-HHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchH----------HH
Q psy3913 54 IDHTMYTGNLG-VGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAG----------IH 122 (423)
Q Consensus 54 ~~~~ly~G~~G-i~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aG----------i~ 122 (423)
.+..++++.-| .+.+|+..+++ ++++ +|++.|....+.+.+.+.. + . ....++.|.+. .+
T Consensus 404 ~Ddkvlt~wNglmi~aLa~a~~~--~~d~--~~l~~A~~~~~fi~~~l~~--~-r--l~~~~~~G~a~~~g~leDYA~~i 474 (667)
T COG1331 404 RDDKVLTDWNGLMIAALAEAGRV--LGDP--EYLEAAERAADFILDNLYV--D-R--LLRRYRGGEAAVAGLLEDYAFLI 474 (667)
T ss_pred CCcceeeccHHHHHHHHHHHHHH--cCCh--HHHHHHHHHHHHHHHhhcc--c-c--hheeeecCcccccccchhHHHHH
Confidence 56788888888 45678888898 8886 8999999988877776542 1 1 23445555441 12
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhc--cccC--------------CCCccccccchhHHHHHHHHHHHhCcc
Q psy3913 123 AVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI--DYVK--------------FGGDEFLVGRAGYLAGIIWAERQLGRQ 186 (423)
Q Consensus 123 ~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~--------------~~~~d~l~G~aG~l~~ll~l~~~~~~~ 186 (423)
.-++.+|+.+++..+++.+++..++++...-+. ++.. .......+|.|=.+.+|+.+...+++.
T Consensus 475 ~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~ 554 (667)
T COG1331 475 LGLLALYEATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDA 554 (667)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCch
Confidence 233567889999999999998888887653321 1110 112224567788888899998888875
Q ss_pred cC
Q psy3913 187 IM 188 (423)
Q Consensus 187 ~~ 188 (423)
.+
T Consensus 555 ~y 556 (667)
T COG1331 555 RY 556 (667)
T ss_pred hH
Confidence 33
No 31
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=93.39 E-value=0.3 Score=47.32 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=81.6
Q ss_pred HHHHHhccccccCCCcchHHHHHHHHHHHHHcc-C-CCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHH
Q psy3913 236 ILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQ-M-PNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYL 313 (423)
Q Consensus 236 I~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~-~-~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~ 313 (423)
.++++..++. ++ ++.+++.++.+++++.+.. + +.|.|-.+..... + ...... ++..+=++.++.. +.
T Consensus 26 ~~~~fa~a~~-~g-~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~----~~~~~~---~Y~~af~l~ala~-~~ 94 (346)
T PF07221_consen 26 QLYTFARAYR-LG-RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-P----LDPQKD---LYDQAFALLALAE-AR 94 (346)
T ss_dssp HHHHHHHHHH-TT-SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-E----EE--EE---HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHh-cC-chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-C----Cccccc---hHHHHHHHHHHHH-HH
Confidence 3455555566 56 6789999999999999864 3 4576644332211 0 011111 4444434455555 56
Q ss_pred HhCcHhHHHHHHHHHHHHHHh------CCCC----CCCcccCchhh---HHHHHHHHHHHcCChHHHHHHHHHHHHhhch
Q psy3913 314 FWGEEKYLNSCIKCGEVIWEK------GLLK----KGPGICHGVSG---NGYAFLLLYRLTKDEQYLHKAYLFANFMLSD 380 (423)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~------g~~~----~~~~LChG~aG---~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~ 380 (423)
.++++++.+.|+++.+.+.+. |... .......+..- .+.+++.++++|++++|+++|.++++.++.+
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~ 174 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDR 174 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 789999999999998887542 1110 01111112111 2457788999999999999999998877643
No 32
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=93.35 E-value=0.46 Score=46.56 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=73.5
Q ss_pred HHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHh
Q psy3913 236 ILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFW 315 (423)
Q Consensus 236 I~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~ 315 (423)
++-++..++..++ ++.+.+.+.+++....... ...|........ ...+. .+| .+.+++++++++
T Consensus 41 ~~~~~~d~~~~t~-d~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~DD-~aw------~~la~l~aye~t 104 (370)
T PF03663_consen 41 MLSALIDYYRRTG-DPTYNDLIQNALLNQRGPN--YDSYNPSNGSGD------RYYDD-NAW------WALALLRAYELT 104 (370)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT--TSSS--S------------BHHH-HHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cchHHHHHHHHHHHHhccc--cccccccccccc------CccCh-HHH------HHHHHHHHHHhh
Confidence 3456667777777 6778888888877776532 111211100000 01111 233 345599999999
Q ss_pred CcH-----hHHHHHHHHHHHHHHhCCCCCCCcccCc--------------------hhhHHHHHHHHHHHcCChHHHHHH
Q psy3913 316 GEE-----KYLNSCIKCGEVIWEKGLLKKGPGICHG--------------------VSGNGYAFLLLYRLTKDEQYLHKA 370 (423)
Q Consensus 316 ~~~-----~~~~~a~~~~~~~~~~g~~~~~~~LChG--------------------~aG~~~~ll~l~~~t~~~~~~~~a 370 (423)
+++ +|++.|++..+.++ .+. +...|.| .+..+.+..+||+.|+|++|++.|
T Consensus 105 ~~~~~~~~~yL~~A~~i~~~~~-~~w---d~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A 180 (370)
T PF03663_consen 105 GDQPSDNPKYLDLAKEIFDFLI-SGW---DDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWA 180 (370)
T ss_dssp --H-----HHHHHHHHHHHHHH-HTB----SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHH-Hhc---CCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHH
Confidence 999 99999999999886 443 1222332 223445567899999999999999
Q ss_pred HHHHHHhhc
Q psy3913 371 YLFANFMLS 379 (423)
Q Consensus 371 ~~~~~~~~~ 379 (423)
.++.+|+.+
T Consensus 181 ~~~~~W~~~ 189 (370)
T PF03663_consen 181 KKIYDWMRD 189 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999865
No 33
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=91.44 E-value=3 Score=42.56 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=76.2
Q ss_pred HHhccccccCCCcchHHHHHHHHHHHHHccC-CCCCCCCCCccCCCCCcccccccccccc---ccCchHHHHH---HHHH
Q psy3913 239 VLLCEKNYVKSNPDIEKDIKETVDFLLKLQM-PNGNFPADLKELYSPTDAKSAANELVHW---CHGAPGVIYL---MAKA 311 (423)
Q Consensus 239 ~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~-~~g~wp~~~~~~~~~~~~~~~~~~~~~W---ChG~~Gi~~~---l~~~ 311 (423)
.|+.++...+ ++.+++.+....+.++..++ +.| .|...-+... .......| |-..+.+... +.++
T Consensus 163 GLLSAy~Ls~-d~~lL~kA~dLgd~Ll~AFdTptg-iP~~~vnl~~------g~~~~~~~~~~~~~lAe~gSl~LEF~~L 234 (522)
T PTZ00470 163 GLLSAYDLTG-DEMYLEKAREIADRLLPAFNEDTG-FPASEINLAT------GRKSYPGWAGGCSILSEVGTLQLEFNYL 234 (522)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHHHhhcCCCC-CCcceeeccc------CCCCCcccCCCccchhhhhhHHHHHHHH
Confidence 4555666666 67788888888888888765 444 2332211110 00111122 2222222222 6667
Q ss_pred HHHhCcHhHHHHHHHHHHHHHHh-----CCC-----CCCCcccCchhhHH-------HHHHHHHHHcC--ChHHHHHHHH
Q psy3913 312 YLFWGEEKYLNSCIKCGEVIWEK-----GLL-----KKGPGICHGVSGNG-------YAFLLLYRLTK--DEQYLHKAYL 372 (423)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~-----g~~-----~~~~~LChG~aG~~-------~~ll~l~~~t~--~~~~~~~a~~ 372 (423)
.++++|++|.+.++++.+.+|+. |+. ..+..++.+..|++ .-|++.|.+++ ++.|++...+
T Consensus 235 S~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~~~ 314 (522)
T PTZ00470 235 SEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLFVE 314 (522)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 88899999999999999999863 332 01112333444443 66788888885 6777766655
Q ss_pred HHHHh
Q psy3913 373 FANFM 377 (423)
Q Consensus 373 ~~~~~ 377 (423)
.++-+
T Consensus 315 a~~~i 319 (522)
T PTZ00470 315 SAKGI 319 (522)
T ss_pred HHHHH
Confidence 54443
No 34
>PLN02993 lupeol synthase
Probab=87.50 E-value=5.8 Score=42.42 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCC
Q psy3913 138 SQCHFDMYTKLATHIKAI--DYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRC 215 (423)
Q Consensus 138 l~~~l~~~~~~~~~~~~~--~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 215 (423)
++..++++.+.+....+. +|...=...+.+|.+-.+.+|..+..... ....+++-++.+++..+. +
T Consensus 588 i~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~----~~~~IrrAv~fLls~Q~~-------D- 655 (763)
T PLN02993 588 IIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYN----DCLAMRKGVHFLLTIQRD-------D- 655 (763)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHHHhcCC-------C-
Confidence 455666666666554332 25322234567777777777754432111 125788888988865331 0
Q ss_pred Cccee--e---cCCcccccc--cc-hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCC
Q psy3913 216 PLMYH--Y---YGTEYLGAC--HG-LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 216 ~~~~~--~---~~~~~~G~a--HG-~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
. .|. | ....+.+.- +. +.+-++|++.+..... .+...+.++++++++++.|.++|.||.
T Consensus 656 G-GWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~-~~~~~~~l~Rgi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 656 G-GWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQ-AERDLIPLHRAAKLIITSQLENGDFPQ 722 (763)
T ss_pred C-CcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHhccCCCCCCCC
Confidence 0 010 1 112233321 11 2455555555544432 223335789999999998888999985
No 35
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=87.30 E-value=29 Score=33.45 Aligned_cols=138 Identities=22% Similarity=0.297 Sum_probs=75.2
Q ss_pred HHHhccccccCCCcchHHHHHHHHHHHHHcc-C-CCCCCCCCCccCCCCCccccccccccccc-cCchHHH----HHHHH
Q psy3913 238 QVLLCEKNYVKSNPDIEKDIKETVDFLLKLQ-M-PNGNFPADLKELYSPTDAKSAANELVHWC-HGAPGVI----YLMAK 310 (423)
Q Consensus 238 ~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~-~-~~g~wp~~~~~~~~~~~~~~~~~~~~~WC-hG~~Gi~----~~l~~ 310 (423)
-+++.+.+.++ ++.+++.+++.++.++..+ + +.|..+.......++.......+..- . +=.||-. .+|.+
T Consensus 146 eA~l~l~~~~~-~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~--~~~~~pGH~~E~~wll~~ 222 (346)
T PF07221_consen 146 EAFLALYEATG-DPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFR--GRIVEPGHDFEWAWLLLE 222 (346)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTT--TSSB-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccc--cCccCCchhHHHHHHHHH
Confidence 45666777777 6788888888888888532 2 23322210000000000000000000 0 1235553 55666
Q ss_pred HH--HHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCch----------------hhHHHHHHHHHHHcCChHHHHHHHH
Q psy3913 311 AY--LFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGV----------------SGNGYAFLLLYRLTKDEQYLHKAYL 372 (423)
Q Consensus 311 ~~--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~----------------aG~~~~ll~l~~~t~~~~~~~~a~~ 372 (423)
+. ...+++++.+.|.+..+...+.|+-...-|++..+ +=.+.+++.+++.|++++|++.+.+
T Consensus 223 ~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~ 302 (346)
T PF07221_consen 223 AARLTGRGDPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARR 302 (346)
T ss_dssp HHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 65 34577888888888887777666532222344432 2235678899999999999999998
Q ss_pred HHHHhh
Q psy3913 373 FANFML 378 (423)
Q Consensus 373 ~~~~~~ 378 (423)
+.+++.
T Consensus 303 ~~~~~~ 308 (346)
T PF07221_consen 303 VWDYIF 308 (346)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 36
>KOG2430|consensus
Probab=87.10 E-value=3.1 Score=39.09 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=59.2
Q ss_pred ccCchHHHH-HHHHHHHHhCcHhHHHHHHHHHHHHHHhC-----------------CCCCCCcccCchhhHHHHHHHHHH
Q psy3913 298 CHGAPGVIY-LMAKAYLFWGEEKYLNSCIKCGEVIWEKG-----------------LLKKGPGICHGVSGNGYAFLLLYR 359 (423)
Q Consensus 298 ChG~~Gi~~-~l~~~~~~~~~~~~~~~a~~~~~~~~~~g-----------------~~~~~~~LChG~aG~~~~ll~l~~ 359 (423)
|.--+|.+. -++.+.+.++++-|.+.|+++.+.+|++. +.+++.|+--|+-.--..+|.+|-
T Consensus 183 ctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayi 262 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI 262 (587)
T ss_pred hhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhh
Confidence 444444432 24555667899999999999999999731 114577888888888888999999
Q ss_pred HcCChHHHHHHHHHHHH
Q psy3913 360 LTKDEQYLHKAYLFANF 376 (423)
Q Consensus 360 ~t~~~~~~~~a~~~~~~ 376 (423)
+.||+.|++|..+-.+.
T Consensus 263 llgddsfldrfn~hyda 279 (587)
T KOG2430|consen 263 LLGDDSFLDRFNKHYDA 279 (587)
T ss_pred eeccHHHHHHHHHHHHH
Confidence 99999999998765544
No 37
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=86.10 E-value=0.7 Score=36.24 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=11.6
Q ss_pred HHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHh
Q psy3913 257 IKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEK 334 (423)
Q Consensus 257 i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 334 (423)
|+++++++++.|.++|.|+.... . -+-.+...+ .+....+++.+.+.++++.+.+.+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-----------~-----~~~~t~~~~----~al~~~~~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-----------S-----DVFVTAALI----LALAAAGDAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp ------------------------------------------------------------TS-SSBSSHHHHHHHHH-
T ss_pred Ccccccccccccccccccccccc-----------c-----ccccccccc----ccccccCCCCcHHHHHHHHHHHHHh
Confidence 57889999999999999963211 0 022223333 3333345667777777777777653
No 38
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=85.41 E-value=19 Score=33.74 Aligned_cols=114 Identities=12% Similarity=-0.002 Sum_probs=70.0
Q ss_pred CchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHh-----CCC---------CCCCcccCch-hhHHHHHHHHHHHcCC-
Q psy3913 300 GAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEK-----GLL---------KKGPGICHGV-SGNGYAFLLLYRLTKD- 363 (423)
Q Consensus 300 G~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-----g~~---------~~~~~LChG~-aG~~~~ll~l~~~t~~- 363 (423)
++.--+.+|+++++.++++.|.+.+.++++.++.. |+. ....++|... ..++.+|..+++..++
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 45566788999999999999999999999998641 221 1123444444 4555555565553321
Q ss_pred --------hHHHHHHHHHHHHhhch---------hhhhcC----C-----CCCCCCccccc-hHHHHHHHHHccCcc
Q psy3913 364 --------EQYLHKAYLFANFMLSD---------DFKRNA----R-----MPDAPFSLYEG-LAGTACFFIDLMQPE 413 (423)
Q Consensus 364 --------~~~~~~a~~~~~~~~~~---------~~~~~~----~-----~~~~~~gl~~G-~aGi~~~Ll~~~~p~ 413 (423)
++......+-+++++.. .|.... . ....+.||..+ .+||+.+|+++.+|+
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 201 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPS 201 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCC
Confidence 23444444555565422 132111 0 12366788777 468999999998775
No 39
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=84.90 E-value=4.4 Score=41.43 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHH-----hCCC----------CCCC---cccCchhhHH---HHHHHHHHHcCC
Q psy3913 305 IYLMAKAYLFWGEEKYLNSCIKCGEVIWE-----KGLL----------KKGP---GICHGVSGNG---YAFLLLYRLTKD 363 (423)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~-----~g~~----------~~~~---~LChG~aG~~---~~ll~l~~~t~~ 363 (423)
+-.|+.||.+++++.+++.|+.+++.+.. .|++ .+.. +-|..+|.++ .=|.+|+++|+|
T Consensus 161 LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd 240 (522)
T PTZ00470 161 LGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGD 240 (522)
T ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCC
Confidence 34467888889999999999999988742 2322 0111 2232333333 337788999999
Q ss_pred hHHHHHHHHHHHHhh
Q psy3913 364 EQYLHKAYLFANFML 378 (423)
Q Consensus 364 ~~~~~~a~~~~~~~~ 378 (423)
++|.+.|+++.+.+.
T Consensus 241 ~kY~~~a~~i~~~l~ 255 (522)
T PTZ00470 241 PKYAEYVDKVMDALF 255 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 40
>PLN02993 lupeol synthase
Probab=84.86 E-value=10 Score=40.60 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=55.3
Q ss_pred cccccchHHHHHHHhccccccCC--CcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHH
Q psy3913 227 LGACHGLSGILQVLLCEKNYVKS--NPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGV 304 (423)
Q Consensus 227 ~G~aHG~~GI~~~Ll~~~~~~~~--~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi 304 (423)
.....+.+-++.+|..+.+.... .+++.+.++++++|+.+.|.++|.|-.+.+ +...+|+.-.
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wg---------------v~y~YgT~~a 624 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWG---------------ICFIYATWFA 624 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccc---------------cccCcHHHHH
Confidence 34566777777777766442221 134566899999999999999999853221 2236688777
Q ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Q psy3913 305 IYLMAKAYLFWGEEKYLNSCIKCGEVIWE 333 (423)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 333 (423)
+.+|..+.....+ ...++++.+.+.+
T Consensus 625 L~aL~a~G~~~~~---~~~IrrAv~fLls 650 (763)
T PLN02993 625 LGGLAAAGKTYND---CLAMRKGVHFLLT 650 (763)
T ss_pred HHHHHHcCCCCCC---cHHHHHHHHHHHH
Confidence 7777554432222 2455666666643
No 41
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=83.46 E-value=5.6 Score=39.64 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCC------CCCC--cccCc--hhhHHHHHHHHHHHcCChHHHHHHHHH
Q psy3913 304 VIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL------KKGP--GICHG--VSGNGYAFLLLYRLTKDEQYLHKAYLF 373 (423)
Q Consensus 304 i~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~------~~~~--~LChG--~aG~~~~ll~l~~~t~~~~~~~~a~~~ 373 (423)
.+..+.+++.+..|+++-..+..+.... |+. ...+ ..=+. ..=.+++++.||+.|++++|++.|.++
T Consensus 389 yll~~vra~~~s~D~~Lw~~~~~m~~~~---gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~ 465 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDPELWDLARTMAHHF---GLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQV 465 (557)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHT---T-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHhhc---CcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3466888898899999888877776532 211 0111 11111 123578889999999999999999999
Q ss_pred HHHhhchhhhhc
Q psy3913 374 ANFMLSDDFKRN 385 (423)
Q Consensus 374 ~~~~~~~~~~~~ 385 (423)
++.++++.+..|
T Consensus 466 g~~l~~~~~~~G 477 (557)
T PF06917_consen 466 GENLFEQHFHRG 477 (557)
T ss_dssp HHHHHHHHEETT
T ss_pred HHHHHHHHccCc
Confidence 999988766544
No 42
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=83.38 E-value=5.7 Score=40.06 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=75.6
Q ss_pred HHHHhcccccc--CCCcchHHHHHHHHHHHHHccC-CCCCCCCCCccCCCCCccccccccccccccC-----chHHH-HH
Q psy3913 237 LQVLLCEKNYV--KSNPDIEKDIKETVDFLLKLQM-PNGNFPADLKELYSPTDAKSAANELVHWCHG-----APGVI-YL 307 (423)
Q Consensus 237 ~~~Ll~~~~~~--~~~~~~~~~i~~~~~~l~~~~~-~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG-----~~Gi~-~~ 307 (423)
+=.|+-+++.. + ++.+++.+.+..+.++..++ ++|. |...-+..+ .....|..+ .+|.. .=
T Consensus 83 lGgLLSay~ls~~~-d~~lL~kA~~lad~Ll~aF~t~~g~-P~~~~n~~~--------~~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 83 LGGLLSAYDLSGEG-DPILLSKAVELADRLLPAFDTPTGI-PYPRVNLRT--------GGKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHGGGGSSSSS----SEEETTT--------CEEETTCCGEEEHHHHCSSHHH
T ss_pred hhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHhccCCCcc-ccceeeecc--------cCCCCCCCCcccccccccceec
Confidence 33455566666 5 67788888888898888765 4553 322111110 000122222 22222 22
Q ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHH--h-----CCC-----CCCCccc-----Cchhh--HHHHHHHHHHHcC--ChHH
Q psy3913 308 MAKAYLFWGEEKYLNSCIKCGEVIWE--K-----GLL-----KKGPGIC-----HGVSG--NGYAFLLLYRLTK--DEQY 366 (423)
Q Consensus 308 l~~~~~~~~~~~~~~~a~~~~~~~~~--~-----g~~-----~~~~~LC-----hG~aG--~~~~ll~l~~~t~--~~~~ 366 (423)
+.++.++|+|++|.+.++++.+.+++ . |+. ..+..+. -|..| --.-|++.+.+++ ++.|
T Consensus 153 f~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~ 232 (452)
T PF01532_consen 153 FTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQY 232 (452)
T ss_dssp HHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHH
T ss_pred hhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHH
Confidence 77788899999999999999999987 2 222 1112222 22222 3467889999999 8888
Q ss_pred HHHHHHHHHHh
Q psy3913 367 LHKAYLFANFM 377 (423)
Q Consensus 367 ~~~a~~~~~~~ 377 (423)
+++....++.+
T Consensus 233 ~~~~~~a~~~i 243 (452)
T PF01532_consen 233 RDMYDEAVDAI 243 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766655544
No 43
>KOG3760|consensus
Probab=82.68 E-value=3.5 Score=39.66 Aligned_cols=113 Identities=21% Similarity=0.323 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHH---HHHHHHHHHhCcHhHHHHHHHHHHH
Q psy3913 254 EKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVI---YLMAKAYLFWGEEKYLNSCIKCGEV 330 (423)
Q Consensus 254 ~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~---~~l~~~~~~~~~~~~~~~a~~~~~~ 330 (423)
....-.|.+|+.+.|++.|.|+..... +..+ ..-.-.++| |-+.|.. ..|.||+..++|++|++.|.++...
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~R--sl~e--gf~~L~PGW-~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~p 453 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVER--SLAE--GFLVLPPGW-HSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKP 453 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhhh--hhhc--CccccCcch-HhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCC
Confidence 334567889999999988999753211 0000 011112455 2233222 3488999999999999998877653
Q ss_pred H------------------HHhCCCCCCCcccCchhhHHHHHHHHHHHcC--ChHHHHHHHHH
Q psy3913 331 I------------------WEKGLLKKGPGICHGVSGNGYAFLLLYRLTK--DEQYLHKAYLF 373 (423)
Q Consensus 331 ~------------------~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~--~~~~~~~a~~~ 373 (423)
- |-...++..+++- +-|-.|.|+-+|.+.. ..+.-..|+.+
T Consensus 454 yk~~S~dgGV~a~Fm~K~~WYEEYPTTP~SfV--LNGF~YSLiGLYDL~eTa~~Kia~EA~~L 514 (594)
T KOG3760|consen 454 YKINSSDGGVRAEFMGKNIWYEEYPTTPGSFV--LNGFLYSLIGLYDLDETARAKIAQEAQEL 514 (594)
T ss_pred eEeecCCCceEEEEccccchhhhcCCCCccee--ehhHHHHhhhhhccchhhhHHHHHHHHHH
Confidence 1 3223333222322 4578899999998743 23443445444
No 44
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=82.28 E-value=11 Score=35.18 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHh-----CCC---------CCCCcccCchhhHHHHH-HHHHHHcCCh-
Q psy3913 301 APGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEK-----GLL---------KKGPGICHGVSGNGYAF-LLLYRLTKDE- 364 (423)
Q Consensus 301 ~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-----g~~---------~~~~~LChG~aG~~~~l-l~l~~~t~~~- 364 (423)
+.--+.+|++++..++|++|++.+.++++.+++. |++ ..-.++=.+++.+..-| ..+++..++-
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~ 120 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFA 120 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTST
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCcc
Confidence 4556788999999999999999999999999652 121 12235555655554444 4445444443
Q ss_pred --------HHHHHHHHHHHHhhch---------hhhh----------cCCCCCCCCccccc-hHHHHHHHHHccCcc
Q psy3913 365 --------QYLHKAYLFANFMLSD---------DFKR----------NARMPDAPFSLYEG-LAGTACFFIDLMQPE 413 (423)
Q Consensus 365 --------~~~~~a~~~~~~~~~~---------~~~~----------~~~~~~~~~gl~~G-~aGi~~~Ll~~~~p~ 413 (423)
+..+...+-+++++.- .|.+ ..| ...+.||..+ .+||+.+|+++.+|+
T Consensus 121 ~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR-~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 121 FVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWAR-AYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---S-TT--SSEECCCHHHHHHHHCTSSS--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccc-cCCCcccccccHHHHHHHHhcCCCCC
Confidence 3333344445555421 1321 112 2466788777 569999999999886
No 45
>PLN03012 Camelliol C synthase
Probab=81.16 E-value=26 Score=37.54 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCC
Q psy3913 138 SQCHFDMYTKLATHIKAI--DYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRC 215 (423)
Q Consensus 138 l~~~l~~~~~~~~~~~~~--~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 215 (423)
.+..++++.+.+....+. +|...=...+.+|.+-.+.+|..+.....+ ...|++-++.+++..+. +
T Consensus 588 i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~----~~~Irrav~fLls~Q~~-------D- 655 (759)
T PLN03012 588 INAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFND----CEAIRKGVHFLLAAQKD-------N- 655 (759)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCC----cHHHHHHHHHHHHhcCC-------C-
Confidence 355666666666554332 244222355677877777777665432221 25788888988875431 0
Q ss_pred Cccee--e---cCCcccccccc---hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCC
Q psy3913 216 PLMYH--Y---YGTEYLGACHG---LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 216 ~~~~~--~---~~~~~~G~aHG---~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
. .|. | ....+++.--| +...++|++.+...... +.--..+++++++|++.|.++|.||.
T Consensus 656 G-GWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~-~~~~~~i~Rg~~~Ll~~Q~~dG~W~q 722 (759)
T PLN03012 656 G-GWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQA-ERDPIPLHRAAKLIINSQLENGDFPQ 722 (759)
T ss_pred C-CcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHcccCCCCCCC
Confidence 0 011 1 11233432211 24555666655544331 11123689999999999889999974
No 46
>KOG2429|consensus
Probab=80.72 E-value=12 Score=37.86 Aligned_cols=122 Identities=22% Similarity=0.331 Sum_probs=79.3
Q ss_pred cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHH-------HHHHHHHHHh
Q psy3913 243 EKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVI-------YLMAKAYLFW 315 (423)
Q Consensus 243 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~-------~~l~~~~~~~ 315 (423)
+...++ |+.+.+.++.|++.+-+.+.+-|..+..+ +...-.|--=.+||. ..++++|..+
T Consensus 208 LSrLTG-D~~fE~vA~~A~~~lW~~RS~igLlGn~i------------dV~tG~W~~~~sGIGAgiDSfyEYllK~yILf 274 (622)
T KOG2429|consen 208 LSRLTG-DPKFEKVARRALDALWSLRSGIGLLGNHI------------DVQTGEWTAPDSGIGAGIDSFYEYLLKGYILF 274 (622)
T ss_pred hHHhhC-CcHHHHHHHHHHHHHHhhcCCCCccccee------------eccccceeccccccccchHHHHHHHHHHheec
Confidence 445677 78999999999999988665444332211 111234555555655 3466677778
Q ss_pred CcHhHHHHHHHHHHHH-------------------------------------------------------HH-hCCCCC
Q psy3913 316 GEEKYLNSCIKCGEVI-------------------------------------------------------WE-KGLLKK 339 (423)
Q Consensus 316 ~~~~~~~~a~~~~~~~-------------------------------------------------------~~-~g~~~~ 339 (423)
+|+++.+.-..+.+.+ |+ .|.+-.
T Consensus 275 gd~e~lemf~ea~~ai~~y~r~~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~lPE 354 (622)
T KOG2429|consen 275 GDPELLEMFNEAYEAIQKYTRKGPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPE 354 (622)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCceehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCCCcc
Confidence 9998887655554443 33 244323
Q ss_pred CCcccCchh-----------hHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy3913 340 GPGICHGVS-----------GNGYAFLLLYRLTKDEQYLHKAYLFANFM 377 (423)
Q Consensus 340 ~~~LChG~a-----------G~~~~ll~l~~~t~~~~~~~~a~~~~~~~ 377 (423)
.+.+-++.. =.......+|++|+||-|++.-..+++.+
T Consensus 355 ryN~~~~~~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~sL 403 (622)
T KOG2429|consen 355 RYNLATQEPPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLKSL 403 (622)
T ss_pred cccccCCCCCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 455666665 25677889999999999998877776654
No 47
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=76.03 E-value=16 Score=36.75 Aligned_cols=120 Identities=25% Similarity=0.325 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHHccCC---------CC-----CCCCCCccCCCCCccccccccccccccCc---hHHHHHHHHHHH
Q psy3913 251 PDIEKDIKETVDFLLKLQMP---------NG-----NFPADLKELYSPTDAKSAANELVHWCHGA---PGVIYLMAKAYL 313 (423)
Q Consensus 251 ~~~~~~i~~~~~~l~~~~~~---------~g-----~wp~~~~~~~~~~~~~~~~~~~~~WChG~---~Gi~~~l~~~~~ 313 (423)
+.++++++=.++|+++.+.+ +| .|+... .... + ...........|+ ...+-+|+.+++
T Consensus 94 ~dllde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~-~~~~--~--~~~~~~~~~~~~t~~~~~~AAalA~As~ 168 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPE-IMPD--D--DPSYRYDAPNPGTDATAEFAAALAAASR 168 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGG-GTGS--G--ESEEEEETTB-EHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCC-CCCC--C--CCcceEecCCCchHHHHHHHHHHHHHHH
Confidence 56888899999999998765 22 143210 0000 0 0011111111122 223456778888
Q ss_pred HhC--cHhHHHHHHHHHHHHHHhCC-----CCCCC-cccCc---hhh----HHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3913 314 FWG--EEKYLNSCIKCGEVIWEKGL-----LKKGP-GICHG---VSG----NGYAFLLLYRLTKDEQYLHKAYLFAN 375 (423)
Q Consensus 314 ~~~--~~~~~~~a~~~~~~~~~~g~-----~~~~~-~LChG---~aG----~~~~ll~l~~~t~~~~~~~~a~~~~~ 375 (423)
+++ |++|-+.+.+.++.+|.... ...+. .-=.| ..+ ...+-..||+.|++++|++.+.....
T Consensus 169 v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 169 VFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 876 57777777777777765221 00011 00000 011 35677899999999999988875553
No 48
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=74.60 E-value=19 Score=31.45 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHH
Q psy3913 306 YLMAKAYLFWGEEKYLNSCIKCGEVI 331 (423)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~a~~~~~~~ 331 (423)
-+|.||+.+|+|++|+++|+++.+..
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~f 62 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNSF 62 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHHh
Confidence 44889999999999999999998865
No 49
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=74.56 E-value=29 Score=30.36 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=73.7
Q ss_pred cccccchH-H-HHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCC---------CCCCCCccCCCCCcccccccccc
Q psy3913 227 LGACHGLS-G-ILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNG---------NFPADLKELYSPTDAKSAANELV 295 (423)
Q Consensus 227 ~G~aHG~~-G-I~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g---------~wp~~~~~~~~~~~~~~~~~~~~ 295 (423)
.||--+.+ | .+-+|.++++.++ ++.+++.++++++.......+.| .|-.-.+. .++
T Consensus 24 ~gW~SamaQG~a~s~l~RAy~~t~-d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~---------~p~--- 90 (189)
T PF06662_consen 24 PGWYSAMAQGQAISVLARAYQLTG-DEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPT---------TPP--- 90 (189)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhHC-CHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCC---------CCC---
Confidence 45544433 2 2355778899999 79999999999988765332223 23110110 011
Q ss_pred ccccCchHHHHHHHHHH---HHhCcHhHHHHHHHHHHHHH------HhCCCCCCCcccC---chh----------hHHHH
Q psy3913 296 HWCHGAPGVIYLMAKAY---LFWGEEKYLNSCIKCGEVIW------EKGLLKKGPGICH---GVS----------GNGYA 353 (423)
Q Consensus 296 ~WChG~~Gi~~~l~~~~---~~~~~~~~~~~a~~~~~~~~------~~g~~~~~~~LCh---G~a----------G~~~~ 353 (423)
-|=.=|.+.+|.-++ ..+++++..+.-++.++.+. ..|..+ .+.|-| |.. --...
T Consensus 91 --s~VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS-~Ydl~h~~~~~~~~~a~~~YH~lHi~q 167 (189)
T PF06662_consen 91 --SYVLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWS-RYDLRHFTLGNAPNIARWDYHRLHIQQ 167 (189)
T ss_pred --CEEeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCc-hhhccccccccCcCcCcchHHHHHHHH
Confidence 112234555544444 44677776666666666552 233221 223322 112 23467
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q psy3913 354 FLLLYRLTKDEQYLHKAYLF 373 (423)
Q Consensus 354 ll~l~~~t~~~~~~~~a~~~ 373 (423)
|..++.+|+|+.+++.|.++
T Consensus 168 L~~L~~it~d~~f~~~a~rW 187 (189)
T PF06662_consen 168 LKWLYSITGDPIFKEYAERW 187 (189)
T ss_pred HHHHHHhcCCHHHHHHHHHh
Confidence 78889999999999988775
No 50
>PLN02613 endoglucanase
Probab=70.79 E-value=52 Score=33.58 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhCC-----CCCCCcccCchhh----HHHHHHHHHHHcCChHHHHHHHH
Q psy3913 304 VIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKGL-----LKKGPGICHGVSG----NGYAFLLLYRLTKDEQYLHKAYL 372 (423)
Q Consensus 304 i~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g~-----~~~~~~LChG~aG----~~~~ll~l~~~t~~~~~~~~a~~ 372 (423)
.+-+|+.++++++ |+.|-+.+.+.++.+|+... ...+...-.+.+| ...+-..||+.|+|++|++.+..
T Consensus 177 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y~~~~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 177 AAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGSYQASCPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4456777888885 67777777777777765321 1111111111122 25566788999999999987654
No 51
>PLN02345 endoglucanase
Probab=70.71 E-value=29 Score=35.09 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhCCCCCCCccc----------Cchhh----HHHHHHHHHHHcCChHH
Q psy3913 303 GVIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKGLLKKGPGIC----------HGVSG----NGYAFLLLYRLTKDEQY 366 (423)
Q Consensus 303 Gi~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~LC----------hG~aG----~~~~ll~l~~~t~~~~~ 366 (423)
..+.+|+.++.+++ |+.|-+.+.+.++.+|+... +.++.+ -...| ...+-..||+.|+|++|
T Consensus 146 ~~AAAlA~as~vfk~~D~~YA~~lL~~Ak~ly~fa~--~~~g~y~~~~~~~~~~Y~s~~~~DEl~WAAawLy~ATgd~~Y 223 (469)
T PLN02345 146 ETAAAMAAASLVFKSSDSTYSDTLLKHAKQLFNFAD--KYRGSYSESIPEVQDYYNSTGYGDELLWAASWLYHATGDKTY 223 (469)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH--hCCCcccCCCCccCCCCCCcccccHHHHHHHHHHHHhCCHHH
Confidence 35566777888885 67776666666666664321 111111 11122 35666789999999999
Q ss_pred HHHHH
Q psy3913 367 LHKAY 371 (423)
Q Consensus 367 ~~~a~ 371 (423)
++.+.
T Consensus 224 l~~~~ 228 (469)
T PLN02345 224 LAYVT 228 (469)
T ss_pred HHHHH
Confidence 98774
No 52
>PLN02266 endoglucanase
Probab=68.69 E-value=95 Score=31.81 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhCCCCCCCc------------ccCchhh----HHHHHHHHHHHcCChH
Q psy3913 304 VIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKGLLKKGPG------------ICHGVSG----NGYAFLLLYRLTKDEQ 365 (423)
Q Consensus 304 i~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~------------LChG~aG----~~~~ll~l~~~t~~~~ 365 (423)
.+.+|+.++++++ |+.|-+.+.+.++.+|+... +.++ .-...+| ...+-..||+.|+|++
T Consensus 195 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~--~~~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~ 272 (510)
T PLN02266 195 TAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFAD--KYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPT 272 (510)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH--hCCCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHH
Confidence 4466777888875 67777777777777765321 1111 1111122 2455578899999999
Q ss_pred HHHHHHHHH
Q psy3913 366 YLHKAYLFA 374 (423)
Q Consensus 366 ~~~~a~~~~ 374 (423)
|++.+....
T Consensus 273 Yl~~~~~~~ 281 (510)
T PLN02266 273 YLNYIQVNG 281 (510)
T ss_pred HHHHHHHHH
Confidence 998876543
No 53
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.14 E-value=43 Score=33.73 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=69.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHH-hhh
Q psy3913 24 NFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNV-LAT 102 (423)
Q Consensus 24 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~-~~~ 102 (423)
.+.+....++...++|-..+.+.. ...-.|.|-.+|-+++.+++++ |+++ +|++.|..+++..... +.+
T Consensus 148 Gkr~lldV~~rlADhi~tvfgp~~------~q~~g~~gH~eielAl~~Ly~~--Tg~~--rYL~LA~~Fi~~rg~~P~~~ 217 (589)
T COG3533 148 GKRRLLDVVCRLADHIATVFGPEE------DQVPGYCGHPEIELALAELYRL--TGDQ--RYLDLARRFIHQRGVEPLAQ 217 (589)
T ss_pred CcchHHHHHHHHHHhhhhhcCccc------cccccccCCCchhHHHHHHHHH--hcCh--HHHHHHHHHHHHhccChhhc
Confidence 445677788888888888887653 2346799999999999999999 9997 9999999999755443 221
Q ss_pred hccCCCCCCcccccCch--HHH--HHHHHHHHHhCChhHHHHHHHHHH
Q psy3913 103 KKHRCITDYSAFLCGDA--GIH--AVLGVFYNAVGDKERSQCHFDMYT 146 (423)
Q Consensus 103 ~~~~~~~~~~~~~~G~a--Gi~--~l~~~l~~~~~~~~~l~~~l~~~~ 146 (423)
.++ ..-.|-| -++ .-++.++..+||+... .++..+-
T Consensus 218 --rg~-----e~~~gHAvr~iyl~~G~A~l~~~~gDds~r-~~~~~lW 257 (589)
T COG3533 218 --RGD-----ELEGGHAVRQIYLYIGAADLAEETGDDSLR-QAAEFLW 257 (589)
T ss_pred --Cch-----hhhhhhHHHHHHHhhhHHHHHHHhCCHHHH-HHHHHHH
Confidence 111 1112322 121 2236677888987643 4444443
No 54
>KOG2431|consensus
Probab=67.25 E-value=15 Score=35.92 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=58.2
Q ss_pred HHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHH------H
Q psy3913 235 GILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYL------M 308 (423)
Q Consensus 235 GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~------l 308 (423)
=++=.|+.++...+ +.-+++.+...-+.++..+.....-|-+..+..+ ...+...|- |++..+.+ +
T Consensus 179 RvLGGLLSayHLsg-~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~------~~A~~p~~~-~~SStaEvttiQlEf 250 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSG-DEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGT------GTAHPPRWT-GDSSTAEVTTIQLEF 250 (546)
T ss_pred HHHhhhhhhhcccc-chhHHHHHHHHHHHHHHhhcCCCCCCcceeecCC------CcccCCCCC-CccchhhheeeeeeH
Confidence 34445677777777 5667777777777777654322234544322211 234445665 66666643 4
Q ss_pred HHHHHHhCcHhHHHHHHHHHHHHHHh
Q psy3913 309 AKAYLFWGEEKYLNSCIKCGEVIWEK 334 (423)
Q Consensus 309 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 334 (423)
..+...++|++|.+.+.+..+.+..-
T Consensus 251 r~Ls~ltgd~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 251 RYLSRLTGDPKYEELAEKVTEHIHGL 276 (546)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHhcc
Confidence 55667789999999999999998643
No 55
>PLN02420 endoglucanase
Probab=66.87 E-value=61 Score=33.31 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=64.3
Q ss_pred CcchHHHHHHHHHHHHHccCC-CCCCCC-----------CCccCCCCCccccccccccccc----cCch---HHHHHHHH
Q psy3913 250 NPDIEKDIKETVDFLLKLQMP-NGNFPA-----------DLKELYSPTDAKSAANELVHWC----HGAP---GVIYLMAK 310 (423)
Q Consensus 250 ~~~~~~~i~~~~~~l~~~~~~-~g~wp~-----------~~~~~~~~~~~~~~~~~~~~WC----hG~~---Gi~~~l~~ 310 (423)
.+.+++.++=.++|+++.+.. +..|.- .+++.. .....+..+ -|+. ..+-+|+.
T Consensus 126 ~~d~Ldeikw~lD~llk~~~~~~~~~~qvGdg~~DH~~w~~Pe~~-------~~~R~~~~i~~~~pgsd~aa~~AAALA~ 198 (525)
T PLN02420 126 LSHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDM-------TTSRRAFKIDENNPGSDIAGETAAAMAA 198 (525)
T ss_pred cHHHHHHHHHHHHHHHHhCcCCCceEEeeCCCCcccccccChhhc-------cccCceEEecCCCCccHHHHHHHHHHHH
Confidence 457888899999999997642 212210 011110 111111111 2322 23455778
Q ss_pred HHHHhC--cHhHHHHHHHHHHHHHHhCCCCCCCccc-------Cc----hhh----HHHHHHHHHHHcCChHHHHHHHHH
Q psy3913 311 AYLFWG--EEKYLNSCIKCGEVIWEKGLLKKGPGIC-------HG----VSG----NGYAFLLLYRLTKDEQYLHKAYLF 373 (423)
Q Consensus 311 ~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~LC-------hG----~aG----~~~~ll~l~~~t~~~~~~~~a~~~ 373 (423)
++.+++ |+.|-+.+.+.++.+|+.+. +.++-+ +| .+| ...+-..||+.|+|++|++.+...
T Consensus 199 AS~vfk~~D~~YA~~~L~~Ak~ly~fA~--~~~g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 199 ASIVFRSTNPHYSHLLLHHAQQLFEFGD--KYRGKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHH--hcCCccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888885 67777777777777765332 111111 11 122 345567889999999999887654
Q ss_pred H
Q psy3913 374 A 374 (423)
Q Consensus 374 ~ 374 (423)
.
T Consensus 277 ~ 277 (525)
T PLN02420 277 A 277 (525)
T ss_pred H
Confidence 3
No 56
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=65.81 E-value=46 Score=31.94 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=35.6
Q ss_pred HHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHhC
Q psy3913 257 IKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGE-EKYLNSCIKCGEVIWEKG 335 (423)
Q Consensus 257 i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~-~~~~~~a~~~~~~~~~~g 335 (423)
|+++++||.+.|.++|.|+... .........+.+....+. +++.+.++++.+.+.+..
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~---------------------~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q 59 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY---------------------SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQ 59 (348)
T ss_pred CchHHHHHHHhccCCCCccccC---------------------CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcC
Confidence 3578999999999999997421 112222222222223343 567788888888876654
No 57
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=65.72 E-value=96 Score=32.86 Aligned_cols=122 Identities=13% Similarity=0.044 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCC
Q psy3913 138 SQCHFDMYTKLATHIKAI--DYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRC 215 (423)
Q Consensus 138 l~~~l~~~~~~~~~~~~~--~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 215 (423)
++.++++..+.+....+. .|...-...+.+|.+-.+.+|.. .+.+ ..+..+++.++.+++..+. +
T Consensus 475 i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~----~G~~-~~~~~i~rA~~~Ll~~Q~~-------D- 541 (634)
T TIGR03463 475 ITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRA----AGAS-PDDMALQRAAAWLRSYQRA-------D- 541 (634)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHH----cCCC-cCcHHHHHHHHHHHHccCC-------C-
Confidence 345566665555543322 23211112234454444444433 2321 1235788888888865321 1
Q ss_pred Cccee--ec---CCcccccccc-hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCC
Q psy3913 216 PLMYH--YY---GTEYLGACHG-LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 216 ~~~~~--~~---~~~~~G~aHG-~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
. .|. |. ...+.+-.++ ..+.+++++.+..... ...+.++++++||++.|.++|.|+.
T Consensus 542 G-gWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~---~~~~~i~rgi~~L~~~Q~~dG~W~~ 604 (634)
T TIGR03463 542 G-GWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGE---GGHDAVQRGVAWLRSRQQEDGRWPR 604 (634)
T ss_pred C-CccCccCccccccccCCCCCcHHHHHHHHHHHHHcCC---cCCHHHHHHHHHHHHhCCCCCCCCC
Confidence 0 111 11 1112221111 3444555555543322 1134689999999999989999975
No 58
>PLN00119 endoglucanase
Probab=65.49 E-value=38 Score=34.38 Aligned_cols=67 Identities=25% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhCCCCCCCcccC----------chhh----HHHHHHHHHHHcCChHH
Q psy3913 303 GVIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKGLLKKGPGICH----------GVSG----NGYAFLLLYRLTKDEQY 366 (423)
Q Consensus 303 Gi~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~LCh----------G~aG----~~~~ll~l~~~t~~~~~ 366 (423)
..+-+|+.++.+++ |+.|-+.+.+.++.+|+... +.++..+ +.+| ...+-..||+.|++++|
T Consensus 181 ~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~--~~~g~y~~~~~~~~g~Y~ss~~~DEl~WAAawLY~aTgd~~Y 258 (489)
T PLN00119 181 ETAAAMAAASIAFAPSDPAYASILIGHAKDLFEFAK--AHPGLYQNSIPNAGGFYASSGYEDELLWAAAWLHRATNDQTY 258 (489)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHH--hCCCcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHhCCHHH
Confidence 35566777888885 67887777777777765321 1111111 1122 34556788999999999
Q ss_pred HHHHH
Q psy3913 367 LHKAY 371 (423)
Q Consensus 367 ~~~a~ 371 (423)
++.+.
T Consensus 259 l~~~~ 263 (489)
T PLN00119 259 LDYLT 263 (489)
T ss_pred HHHHH
Confidence 87654
No 59
>PLN02909 Endoglucanase
Probab=61.63 E-value=1e+02 Score=31.34 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=61.4
Q ss_pred CcchHHHHHHHHHHHHHccCCCC---------CCCCC---CccCCCCCccccccccccccc----cCc---hHHHHHHHH
Q psy3913 250 NPDIEKDIKETVDFLLKLQMPNG---------NFPAD---LKELYSPTDAKSAANELVHWC----HGA---PGVIYLMAK 310 (423)
Q Consensus 250 ~~~~~~~i~~~~~~l~~~~~~~g---------~wp~~---~~~~~~~~~~~~~~~~~~~WC----hG~---~Gi~~~l~~ 310 (423)
.+.+++.++=.++|+++.+..++ +|... +++.. ..+..+..+ =|+ .-.+-+|+.
T Consensus 119 ~~d~ldeikw~~D~llk~~~~~~~~y~qVg~~~~Dh~~W~~Pe~~-------~~~R~~~~i~~~~pgtd~a~~~AAAlA~ 191 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAASRKNRLYVQVGDPNLDHQCWVRPENM-------KTPRTVLEIDEKTPGTEIAAETAAAMAA 191 (486)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccCCChhhc-------cCCceeEecCCCCCCcHHHHHHHHHHHH
Confidence 46788889999999999764322 22211 01100 111111111 122 223455777
Q ss_pred HHHHhC--cHhHHHHHHHHHHHHHHh-----CCCCCCCcccCchhh----HHHHHHHHHHHcCChHHHHHHHH
Q psy3913 311 AYLFWG--EEKYLNSCIKCGEVIWEK-----GLLKKGPGICHGVSG----NGYAFLLLYRLTKDEQYLHKAYL 372 (423)
Q Consensus 311 ~~~~~~--~~~~~~~a~~~~~~~~~~-----g~~~~~~~LChG~aG----~~~~ll~l~~~t~~~~~~~~a~~ 372 (423)
++++++ |+.|-+.+.+.++.+|+. |.......+-....| ...+-..||+.|+|++|++.+..
T Consensus 192 as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 192 SSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGTYDGECPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 788875 677766666666666542 221111111112222 34556788999999999886653
No 60
>KOG2429|consensus
Probab=61.57 E-value=72 Score=32.54 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=54.6
Q ss_pred ccCchHHHHH-HHHHHHHhCcHhHHHHHHHHHHHHHHh----CCC------------CCCCcccCchhhHHHHHHHHHHH
Q psy3913 298 CHGAPGVIYL-MAKAYLFWGEEKYLNSCIKCGEVIWEK----GLL------------KKGPGICHGVSGNGYAFLLLYRL 360 (423)
Q Consensus 298 ChG~~Gi~~~-l~~~~~~~~~~~~~~~a~~~~~~~~~~----g~~------------~~~~~LChG~aG~~~~ll~l~~~ 360 (423)
|--..|-+.+ +--+.+.++|++|.+.|+++.+.+|+. |++ ..+.|+=-|+-.--..+++.|-+
T Consensus 194 ctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yIL 273 (622)
T KOG2429|consen 194 CTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYIL 273 (622)
T ss_pred ecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHhee
Confidence 6555554421 333456789999999999999999973 222 13456666666667777888889
Q ss_pred cCChHHHHHHHHHHH
Q psy3913 361 TKDEQYLHKAYLFAN 375 (423)
Q Consensus 361 t~~~~~~~~a~~~~~ 375 (423)
.+|+++++......+
T Consensus 274 fgd~e~lemf~ea~~ 288 (622)
T KOG2429|consen 274 FGDPELLEMFNEAYE 288 (622)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999877654443
No 61
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=60.57 E-value=13 Score=37.62 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHh--CcHhHHHHHHHHHHHHHH-----hCCC------CC-------CCccc-CchhhHHHHHHHHHHHcC
Q psy3913 304 VIYLMAKAYLFW--GEEKYLNSCIKCGEVIWE-----KGLL------KK-------GPGIC-HGVSGNGYAFLLLYRLTK 362 (423)
Q Consensus 304 i~~~l~~~~~~~--~~~~~~~~a~~~~~~~~~-----~g~~------~~-------~~~LC-hG~aG~~~~ll~l~~~t~ 362 (423)
++-.|+.+|..+ +|+.+++.|+++++.+.. .|++ .. +..-| ...+....=|.+|+++|+
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 445578889999 999999999999998632 2322 00 01123 344445566889999999
Q ss_pred ChHHHHHHHHHHHHhhc
Q psy3913 363 DEQYLHKAYLFANFMLS 379 (423)
Q Consensus 363 ~~~~~~~a~~~~~~~~~ 379 (423)
|++|.+.|.++.+.+..
T Consensus 162 d~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWR 178 (452)
T ss_dssp -THHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 62
>PLN03009 cellulase
Probab=57.52 E-value=82 Score=32.17 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhC-----CCCCCCcccCch-------hh----HHHHHHHHHHHcCC
Q psy3913 302 PGVIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKG-----LLKKGPGICHGV-------SG----NGYAFLLLYRLTKD 363 (423)
Q Consensus 302 ~Gi~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g-----~~~~~~~LChG~-------aG----~~~~ll~l~~~t~~ 363 (423)
...+-+|+.++++++ |+.|-+.+.+.++.+|+.+ ........--|. .| ...+-..||+.|+|
T Consensus 176 ~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd 255 (495)
T PLN03009 176 GETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGD 255 (495)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCC
Confidence 445566888888885 7777776666666666532 211110000111 11 23555678999999
Q ss_pred hHHHHHHHH
Q psy3913 364 EQYLHKAYL 372 (423)
Q Consensus 364 ~~~~~~a~~ 372 (423)
++|+..+..
T Consensus 256 ~~Yl~~~~~ 264 (495)
T PLN03009 256 DSYLNYIEN 264 (495)
T ss_pred HHHHHHHHH
Confidence 999887653
No 63
>PLN02308 endoglucanase
Probab=56.91 E-value=1.1e+02 Score=31.37 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhCCC---CCCCcccCch-------hh----HHHHHHHHHHHcCChHHH
Q psy3913 304 VIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKGLL---KKGPGICHGV-------SG----NGYAFLLLYRLTKDEQYL 367 (423)
Q Consensus 304 i~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g~~---~~~~~LChG~-------aG----~~~~ll~l~~~t~~~~~~ 367 (423)
.+-+|+.++++++ |+.|-+.+.+.++.+|+...- ....+..-.. .| ...+-..||+.|+|++|+
T Consensus 177 ~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DEl~WAAawLy~ATgd~~Yl 256 (492)
T PLN02308 177 TAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDELLWGAAWLHKASRRREYR 256 (492)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHHHHHHHHHHHHHhCCHHHH
Confidence 3356778888886 788877777777777652210 0011111111 12 156667889999999998
Q ss_pred HHHHHH
Q psy3913 368 HKAYLF 373 (423)
Q Consensus 368 ~~a~~~ 373 (423)
+.+.+.
T Consensus 257 ~~~~~~ 262 (492)
T PLN02308 257 EYIVKN 262 (492)
T ss_pred HHHHHH
Confidence 876543
No 64
>PLN02340 endoglucanase
Probab=55.54 E-value=49 Score=34.68 Aligned_cols=69 Identities=25% Similarity=0.197 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHhCCCCCCCcccC----------chhh----HHHHHHHHHHHcCChHHH
Q psy3913 304 VIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEKGLLKKGPGICH----------GVSG----NGYAFLLLYRLTKDEQYL 367 (423)
Q Consensus 304 i~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~LCh----------G~aG----~~~~ll~l~~~t~~~~~~ 367 (423)
.+.+|+.++.+++ |+.|-+.+.+.++.+|+... +.++.+. ..+| ...+-..||+.|+|++|+
T Consensus 181 ~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA~--~~~g~y~~s~~~a~~~Y~ss~~~DEl~WAAawLy~ATgd~~Yl 258 (614)
T PLN02340 181 TAAALAAASKAFKPYNSSYSDLLLVHAKQLFSFAD--KFRGLYDDSIQNAKKFYTSSGYSDELLWAAAWLYRATGDEYYL 258 (614)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH--hCCCCccCCCCccccCCCCCCcchHHHHHHHHHHHHhCCHHHH
Confidence 4566777888875 67777777777777765321 1111111 1122 345567889999999999
Q ss_pred HHHHHHH
Q psy3913 368 HKAYLFA 374 (423)
Q Consensus 368 ~~a~~~~ 374 (423)
+.+....
T Consensus 259 ~~~~~~~ 265 (614)
T PLN02340 259 KYVVDNA 265 (614)
T ss_pred HHHHHHH
Confidence 8876543
No 65
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=55.46 E-value=1.8e+02 Score=28.56 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=77.3
Q ss_pred HHHHHhccccccCCCcchHHHHHHHHHHHHHc-cCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHH
Q psy3913 236 ILQVLLCEKNYVKSNPDIEKDIKETVDFLLKL-QMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLF 314 (423)
Q Consensus 236 I~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~-~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~ 314 (423)
-++....++.... .....+.+...++++.+. ++++|+|-........+ .....- |++-+=++.+++.+...
T Consensus 60 qvy~fA~A~~~g~-~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~----~Dat~d---~Y~haFallA~A~~a~a 131 (388)
T COG2942 60 QVYCFAVAGLLGW-RGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGP----VDATKD---LYGHAFALLAAAHAATA 131 (388)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCc----ccccHh---HHHHHHHHHHHHHHHhc
Confidence 3445555555554 456889999999999975 45778773322211100 011111 77777777666665544
Q ss_pred hCcHh---HHHHHHHHHHHH-HHhC--CC----CCCCcccCch---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhhch
Q psy3913 315 WGEEK---YLNSCIKCGEVI-WEKG--LL----KKGPGICHGV---SGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSD 380 (423)
Q Consensus 315 ~~~~~---~~~~a~~~~~~~-~~~g--~~----~~~~~LChG~---aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~ 380 (423)
+.++ ..+.+....+.. |+.. +. +..++.=-|. .=+..++|-.|..|++..|+.+|.++++-++.+
T Consensus 132 -~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~r 209 (388)
T COG2942 132 -GPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISR 209 (388)
T ss_pred -CChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 4444 444444444433 4322 11 1111110011 125678899999999999999999998877654
No 66
>PLN02171 endoglucanase
Probab=52.43 E-value=94 Score=32.76 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHh-----CCCCCC----CcccCchhh----HHHHHHHHHHHcCChHHHH
Q psy3913 304 VIYLMAKAYLFWG--EEKYLNSCIKCGEVIWEK-----GLLKKG----PGICHGVSG----NGYAFLLLYRLTKDEQYLH 368 (423)
Q Consensus 304 i~~~l~~~~~~~~--~~~~~~~a~~~~~~~~~~-----g~~~~~----~~LChG~aG----~~~~ll~l~~~t~~~~~~~ 368 (423)
.+.+|+.++.+++ |+.|-+.+.+.++.+|+. |....+ .+.-.-.+| ...+-..||+.|+|++|++
T Consensus 181 ~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DEl~WAAawLy~ATgd~~Yl~ 260 (629)
T PLN02171 181 TAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDELLWAAAWLYQATNNQYYLD 260 (629)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHHHHHHHHHHHHHhCCHHHHH
Confidence 3456777778874 677766666666666652 211000 001100122 3445568899999999998
Q ss_pred HHHHHHH
Q psy3913 369 KAYLFAN 375 (423)
Q Consensus 369 ~a~~~~~ 375 (423)
.+....+
T Consensus 261 ~~~~~~~ 267 (629)
T PLN02171 261 YLGNNGD 267 (629)
T ss_pred HHHHHHH
Confidence 8765544
No 67
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=49.41 E-value=8.9 Score=24.53 Aligned_cols=21 Identities=38% Similarity=0.770 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHccCCCCCCCC
Q psy3913 256 DIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 256 ~i~~~~~~l~~~~~~~g~wp~ 276 (423)
.++++++|++..|.++|.|..
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~ 22 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGG 22 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBS
T ss_pred CHHHHHHHHHHHCCCCCCCCC
Confidence 367899999998888888854
No 68
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=48.80 E-value=2.9e+02 Score=29.18 Aligned_cols=22 Identities=36% Similarity=0.801 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHccCCCCCCCC
Q psy3913 255 KDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 255 ~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
+.++++++|+++.|.++|.|+.
T Consensus 567 ~ai~rgv~~L~~~Q~~dG~w~~ 588 (621)
T TIGR01787 567 EAIERGVKYLLETQRPDGDWPQ 588 (621)
T ss_pred HHHHHHHHHHHHhCCCCCCCCC
Confidence 4799999999998888999964
No 69
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=47.84 E-value=1.3e+02 Score=31.90 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHH
Q psy3913 251 PDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEV 330 (423)
Q Consensus 251 ~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~ 330 (423)
+.+.+.++++.+++.+.|.++|.|+...+ .+ +--+++.+.++.-+.. .++ +..+++.+.
T Consensus 12 ~~~~~a~~~~~~~l~~~Q~~dG~W~~e~~-----------~~-----~~~~a~~i~~~~~~g~--~~~---~~~~~~~~~ 70 (635)
T TIGR01507 12 ARTVEAIDRAVDYLLSCQKDEGYWWGELE-----------SN-----VTIEAEYVLLCHILDR--VDR---DRMEKIRNY 70 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccccC-----------Cc-----chhcHHHHHHHHHHCC--CcH---HHHHHHHHH
Confidence 34577899999999999999999975332 12 4456777755544432 222 233444455
Q ss_pred HHHhCCCCCCCcccCchhhH------HHHHHHHHHHcCChHHHHHHHHHHH
Q psy3913 331 IWEKGLLKKGPGICHGVSGN------GYAFLLLYRLTKDEQYLHKAYLFAN 375 (423)
Q Consensus 331 ~~~~g~~~~~~~LChG~aG~------~~~ll~l~~~t~~~~~~~~a~~~~~ 375 (423)
+.+.-...-+-++.+|-.|. +|+-|++.-...+.....+|++++.
T Consensus 71 l~~~Q~~DGgWg~~~~~~~~~~~Tv~~Y~aLrl~G~~~~~~~m~rAr~~I~ 121 (635)
T TIGR01507 71 LLHEQREDGTWALYPGGPGDLSTTVEAYVALKYIGMSRDEPPMQKALRFIQ 121 (635)
T ss_pred HHHhccCCCCccCccCCCcchhHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 54322111234555554443 3444444445556566777766544
No 70
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=47.00 E-value=7.4 Score=30.27 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=17.0
Q ss_pred CcchHHHHHHHHHHHHHccCCCCCCCC
Q psy3913 250 NPDIEKDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 250 ~~~~~~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
+....+.|+++++|+++.|.++|.|+.
T Consensus 41 ~~~~~~ai~ka~~~l~~~Q~~dG~w~~ 67 (109)
T PF13243_consen 41 DAAVDEAIKKAIDWLLSHQNPDGGWGY 67 (109)
T ss_dssp TS-SSBSSHHHHHHHHH---TTS--S-
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCCCC
Confidence 346667899999999999888999964
No 71
>PLN03012 Camelliol C synthase
Probab=46.10 E-value=99 Score=33.33 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=48.5
Q ss_pred hHHHHHHHhccccccCC--CcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHH
Q psy3913 233 LSGILQVLLCEKNYVKS--NPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAK 310 (423)
Q Consensus 233 ~~GI~~~Ll~~~~~~~~--~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~ 310 (423)
.+-++-+|..+.+.... .+++...|+++++|+++.|.++|.|..+.+ +...+|+.-.+..|..
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wg---------------v~y~YgT~~aL~aL~a 630 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWG---------------ICFTYGTWFALAGLAA 630 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccc---------------ccCCcHHHHHHHHHHH
Confidence 34445555544433220 123566899999999999999999964332 2225677777766665
Q ss_pred HHHHhCcHhHHHHHHHHHHHHHH
Q psy3913 311 AYLFWGEEKYLNSCIKCGEVIWE 333 (423)
Q Consensus 311 ~~~~~~~~~~~~~a~~~~~~~~~ 333 (423)
+.....+ ...++++.+.+.+
T Consensus 631 ~g~~~~~---~~~Irrav~fLls 650 (759)
T PLN03012 631 AGKTFND---CEAIRKGVHFLLA 650 (759)
T ss_pred hCccCCC---cHHHHHHHHHHHH
Confidence 5433233 2445566665543
No 72
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=42.60 E-value=78 Score=33.53 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=28.7
Q ss_pred chHHHHHHHhccccccCC--CcchHHHHHHHHHHHHHccCCCCCCCC
Q psy3913 232 GLSGILQVLLCEKNYVKS--NPDIEKDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 232 G~~GI~~~Ll~~~~~~~~--~~~~~~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
..+-++.+|..+...... .+++.+.++++++|+.+.|.++|.|+.
T Consensus 452 ~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g 498 (634)
T TIGR03463 452 CTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPG 498 (634)
T ss_pred HHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 344444555544332210 134566789999999999999999964
No 73
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=42.51 E-value=1.4e+02 Score=29.19 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=54.2
Q ss_pred ccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCCCC---CCcccCchhh--------------HHHHHHHHHHH
Q psy3913 298 CHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKK---GPGICHGVSG--------------NGYAFLLLYRL 360 (423)
Q Consensus 298 ChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~LChG~aG--------------~~~~ll~l~~~ 360 (423)
--|+.=|+++|+.|.+..+++.|.+.++.+++.|++...... .+-|--|..| .-.+|-.+++.
T Consensus 115 SDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa~~ 194 (376)
T PRK11097 115 SDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFARF 194 (376)
T ss_pred ChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHHHh
Confidence 346677899999999999999999999999999987544211 1123334433 22345556677
Q ss_pred cCChHHHHHHHHHHHHh
Q psy3913 361 TKDEQYLHKAYLFANFM 377 (423)
Q Consensus 361 t~~~~~~~~a~~~~~~~ 377 (423)
+++..|.+.+......+
T Consensus 195 ~~~~~W~~l~~~~~~lL 211 (376)
T PRK11097 195 LPGGPWAALAATNARLL 211 (376)
T ss_pred cCCchHHHHHHHHHHHH
Confidence 88888877765544443
No 74
>KOG2244|consensus
Probab=37.28 E-value=2.3e+02 Score=29.11 Aligned_cols=136 Identities=19% Similarity=0.143 Sum_probs=77.0
Q ss_pred HHHhccccccCCCcchHHHHHHHHHHHHHccC--CCCCCCC-CCccCCCCCccccccccccccccCchH----HHHHHHH
Q psy3913 238 QVLLCEKNYVKSNPDIEKDIKETVDFLLKLQM--PNGNFPA-DLKELYSPTDAKSAANELVHWCHGAPG----VIYLMAK 310 (423)
Q Consensus 238 ~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~--~~g~wp~-~~~~~~~~~~~~~~~~~~~~WChG~~G----i~~~l~~ 310 (423)
-.+.++++.++.++++.+.+...++++-+... ..+..-. +.-...+- .-..++. ..|--|..- .+..|+.
T Consensus 512 Sgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g--~ve~~n~-~~~~~~FldDYAFlI~gLLD 588 (786)
T KOG2244|consen 512 SGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASG--RVEHSNR-PSKAPAFLDDYAFLISGLLD 588 (786)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCc--ceeccCC-ccccchhhhhHHHHHHHHHH
Confidence 34566777777566788888888888877432 2222111 10000000 0001111 223222222 2344667
Q ss_pred HHHHhCcHhHHHHHHHHHHHH----HHhCCC--------------C--CCCcccCchhhHHHHHHHHHHHcCChHHHHHH
Q psy3913 311 AYLFWGEEKYLNSCIKCGEVI----WEKGLL--------------K--KGPGICHGVSGNGYAFLLLYRLTKDEQYLHKA 370 (423)
Q Consensus 311 ~~~~~~~~~~~~~a~~~~~~~----~~~g~~--------------~--~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a 370 (423)
+|...++.++++.|.+..+.- |+-|-. + .+-.==.|.+=.+.-|++++..++.+.|++.|
T Consensus 589 lYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ka 668 (786)
T KOG2244|consen 589 LYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLNKA 668 (786)
T ss_pred HHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHHHHH
Confidence 788889999999988776542 542200 0 01112246666788899999999999999999
Q ss_pred HHHHHH
Q psy3913 371 YLFANF 376 (423)
Q Consensus 371 ~~~~~~ 376 (423)
.+.+..
T Consensus 669 ~~ll~~ 674 (786)
T KOG2244|consen 669 HRLLAV 674 (786)
T ss_pred HHHHHH
Confidence 887654
No 75
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=31.60 E-value=6.5e+02 Score=26.70 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=29.4
Q ss_pred hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCC
Q psy3913 233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPA 276 (423)
Q Consensus 233 ~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~ 276 (423)
.+-++.+|..+. ...++...+.++++++|++..|.++|.|+.
T Consensus 383 Ta~~L~AL~~~~--~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~a 424 (635)
T TIGR01507 383 TAVVVWALNGLR--LPDERRRRDAMTKAFRWIAGMQSSNGGWGA 424 (635)
T ss_pred HHHHHHHHHHcC--CCccccchHHHHHHHHHHHHhcCCCCCEec
Confidence 344566665542 222345667899999999999999999964
No 76
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=28.80 E-value=7.2e+02 Score=26.31 Aligned_cols=308 Identities=12% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhhccccCCCCccccccc
Q psy3913 90 RRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGR 169 (423)
Q Consensus 90 ~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~d~l~G~ 169 (423)
...+++..+.+...-..+ ...+...-......+.+..... .+...+++.++.+.+.+-...+-.+.......-+...
T Consensus 235 ~~a~~~~~~~i~~~q~~~--g~~~~~~~~~~l~~lal~~~g~-~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDT 311 (634)
T cd02892 235 RKALRKAYEWILYRDENT--GYLGIIPPPKANNMLALWVLGY-PDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDT 311 (634)
T ss_pred HHHHHHHHHHHHHHhcCC--CceeeeehHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCchHHH
Q ss_pred hhHHHHHHHHHHHhCcccCcHHHHHHHHHHHH-HcCccccccccCCCCcceeec---CCcccccccchHHHHHHHhcccc
Q psy3913 170 AGYLAGIIWAERQLGRQIMSLEDRTAICNALI-LSGRSYSQANNLRCPLMYHYY---GTEYLGACHGLSGILQVLLCEKN 245 (423)
Q Consensus 170 aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~G~aHG~~GI~~~Ll~~~~ 245 (423)
+=.+.++......-.....+.+.++=+.+.-+ +....|........+-.|.+. ......-|-..+-.++..+....
T Consensus 312 ala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~ 391 (634)
T cd02892 312 ALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELP 391 (634)
T ss_pred HHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccC
Q ss_pred ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCcccccccc-ccccc----cC-----------chHHHHHHH
Q psy3913 246 YVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANE-LVHWC----HG-----------APGVIYLMA 309 (423)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~-~~~WC----hG-----------~~Gi~~~l~ 309 (423)
..+ +....+.++++++|+++.|.++|.|...... .... ....+ +| ++-++.+|.
T Consensus 392 ~~~-~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~---------~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~ 461 (634)
T cd02892 392 PFG-EKVSRERLYDAVDWLLGMQNSNGGFAAFEPD---------NTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALG 461 (634)
T ss_pred Ccc-hhhHHHHHHHHHHHHHhccCCCCCEeeecCC---------CchhhHhhcCchhhhcccccCCCCcchHHHHHHHHH
Q ss_pred HHHHHhCc------HhHHHHHHHHHHHHHHhCCCCCCCcccC--chhhHHHHHHHHHHHcCChHHHHHHHHHHHHhhchh
Q psy3913 310 KAYLFWGE------EKYLNSCIKCGEVIWEKGLLKKGPGICH--GVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDD 381 (423)
Q Consensus 310 ~~~~~~~~------~~~~~~a~~~~~~~~~~g~~~~~~~LCh--G~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 381 (423)
.+.....+ +...+.++-..+.-...|-.....+.|+ |++=.+.+|..+.....+.....++.+++...-...
T Consensus 462 ~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D 541 (634)
T cd02892 462 LFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD 541 (634)
T ss_pred HhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC
Q ss_pred hhhcCCCCCCCCccccc-----hHHHHHHHHHcc
Q psy3913 382 FKRNARMPDAPFSLYEG-----LAGTACFFIDLM 410 (423)
Q Consensus 382 ~~~~~~~~~~~~gl~~G-----~aGi~~~Ll~~~ 410 (423)
..-+..........+.+ ....++.++.++
T Consensus 542 GgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl 575 (634)
T cd02892 542 GGWGESYLSYEDKSYAGGGRSTVVQTAWALLALM 575 (634)
T ss_pred CCCCCccccccCcccCCCCCCcHHHHHHHHHHHH
No 77
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=26.05 E-value=55 Score=30.19 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=58.6
Q ss_pred ccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH-----hCCC--------------CCCCcccCchhhHHHHHHHHH
Q psy3913 298 CHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWE-----KGLL--------------KKGPGICHGVSGNGYAFLLLY 358 (423)
Q Consensus 298 ChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~-----~g~~--------------~~~~~LChG~aG~~~~ll~l~ 358 (423)
.+|.+||. +++.+..+ -++++.|.++.+.+.+ .|+. +--+..|.|+.=-+.+-|.++
T Consensus 149 ~NgPa~I~--~ar~~~~~--~krL~~AMK~~dWi~~~Lid~DGlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr 224 (377)
T COG4833 149 ANGPAGIF--LARYPDQY--GKRLKRAMKMADWIDRTLIDPDGLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALR 224 (377)
T ss_pred CCCcceEE--EeechHHH--HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccCchhheeeccccceeEeechhhhhhh
Confidence 67888887 55554322 3456666666554421 1111 224688999874466777777
Q ss_pred H-HcCChHHHHHHHHHHHHhhchhhhhcC---CCCCCCCccccchHH
Q psy3913 359 R-LTKDEQYLHKAYLFANFMLSDDFKRNA---RMPDAPFSLYEGLAG 401 (423)
Q Consensus 359 ~-~t~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~gl~~G~aG 401 (423)
+ .+.+.+|..++.+.+.....+-=..|. ......-|||.|+-=
T Consensus 225 ~~~a~~A~Y~a~~h~~vaav~~~mT~~Gv~~~e~ggGDgGLFKGI~~ 271 (377)
T COG4833 225 TGPAARARYCARVHRLVAAVNEHMTPLGVLRGEAGGGDGGLFKGITA 271 (377)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhcCccceeecCCCCCccchhhhHHH
Confidence 7 677778999988877655322101111 122344689988643
No 78
>KOG2431|consensus
Probab=25.52 E-value=2.1e+02 Score=28.33 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=42.3
Q ss_pred CCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHhhchhhhhcCCCCCCCCccccc
Q psy3913 339 KGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEG 398 (423)
Q Consensus 339 ~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~G 398 (423)
.+..++.=+-=++=.||++|.+++++.|++.|..+.+.++. .|+.....|..+.-|-+|
T Consensus 169 ~~VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~-AF~sps~IPysdVnL~~~ 227 (546)
T KOG2431|consen 169 RDVNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLP-AFSSPSPIPYSDVNLGTG 227 (546)
T ss_pred cceehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHH-hhcCCCCCCcceeecCCC
Confidence 35678888888888899999999999999999999998864 344333333333333333
No 79
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=23.94 E-value=8.8e+02 Score=25.66 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=26.7
Q ss_pred cchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCC
Q psy3913 231 HGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFP 275 (423)
Q Consensus 231 HG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp 275 (423)
+|..=.+.+|..+.+... + .+.++++++|+++.|.++|.|-
T Consensus 489 YgT~~al~aL~~~G~~~~-~---~~~i~rA~~~L~~~Q~~DGGWg 529 (621)
T TIGR01787 489 YGTGFVLSALAAAGRTYR-N---CPEVQKACDWLLSRQMPDGGWG 529 (621)
T ss_pred hhHHHHHHHHHHhCCccc-C---CHHHHHHHHHHHhhcCCCCCCC
Confidence 344434455555443222 1 1679999999999988899894
No 80
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=82 Score=29.78 Aligned_cols=84 Identities=14% Similarity=0.314 Sum_probs=46.8
Q ss_pred HHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCC
Q psy3913 257 IKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGL 336 (423)
Q Consensus 257 i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~ 336 (423)
.++.+.|+...|.+.|.+.-. .+ +..+.++.-||-++.-++. .....+.+++.+.+-.+.+.. .-|+
T Consensus 225 ~E~l~~Wl~~RQ~ssgGl~GR-~n-------Kl~D~CYs~WvlsSl~il~----~~~~in~e~L~~yiL~c~q~~-sGGf 291 (342)
T COG5029 225 VEKLIRWLAERQLSSGGLNGR-SN-------KLVDTCYSFWVLSSLAILG----KLDFINTEELTDYILDCQQET-SGGF 291 (342)
T ss_pred HHHHHHHHHHcccccCCcCCC-cc-------cCccchhhhhhcchHHhcc----hhhhcCHHHHHHHHHhhcccC-CCCC
Confidence 778889999988866544211 11 1235567778888776664 222234555665555554443 2344
Q ss_pred CC------CCCcccCchhhHHHH
Q psy3913 337 LK------KGPGICHGVSGNGYA 353 (423)
Q Consensus 337 ~~------~~~~LChG~aG~~~~ 353 (423)
-. .-+..|-|++|..++
T Consensus 292 sdrp~~~~D~yHt~~~lagLsl~ 314 (342)
T COG5029 292 SDRPGEEPDVYHTCFGLAGLSLI 314 (342)
T ss_pred CCCCcccchHHHHHHHHHHHHHh
Confidence 21 123566677776543
No 81
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=55 Score=28.73 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=15.6
Q ss_pred ccccccccCchHHHHHHHHH
Q psy3913 292 NELVHWCHGAPGVIYLMAKA 311 (423)
Q Consensus 292 ~~~~~WChG~~Gi~~~l~~~ 311 (423)
+-+++||+|.+=.+..+..-
T Consensus 9 DPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 9 DPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred CcchhhhhCccHHHHHHHhc
Confidence 45789999999888766554
No 82
>KOG2244|consensus
Probab=20.56 E-value=2.9e+02 Score=28.44 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=53.8
Q ss_pred cccccccCchHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHH------hCCC-------------------CCCCcccCc
Q psy3913 293 ELVHWCHGAPGVIYLMAKAYLFWG-EEKYLNSCIKCGEVIWE------KGLL-------------------KKGPGICHG 346 (423)
Q Consensus 293 ~~~~WChG~~Gi~~~l~~~~~~~~-~~~~~~~a~~~~~~~~~------~g~~-------------------~~~~~LChG 346 (423)
-.++| .|.. +..|.+++++++ +++|.+.|..+++.+-+ .+++ .+.+++..-
T Consensus 502 ii~sW-nGLv--iSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldD 578 (786)
T KOG2244|consen 502 IIVSW-NGLV--ISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDD 578 (786)
T ss_pred heeec-cchh--hHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhh
Confidence 34566 3433 234888888875 55888888888776521 1110 122345555
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy3913 347 VSGNGYAFLLLYRLTKDEQYLHKAYLFANF 376 (423)
Q Consensus 347 ~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 376 (423)
.|=..-.||.+|..+++.+|++.|.++-+.
T Consensus 579 YAFlI~gLLDlYea~~~~e~LkwA~~LQdt 608 (786)
T KOG2244|consen 579 YAFLISGLLDLYEAGGGIEWLKWAIKLQDT 608 (786)
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 666778899999999999999999876553
No 83
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.17 E-value=1e+02 Score=20.16 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=18.8
Q ss_pred ccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCC
Q psy3913 298 CHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGL 336 (423)
Q Consensus 298 ChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~ 336 (423)
+||+.|++....+.. +...++.+.+.+.+.|+
T Consensus 2 v~GTlGiL~~Ak~~G-------lI~~~~~~l~~l~~~g~ 33 (48)
T PF11848_consen 2 VTGTLGILLLAKRRG-------LISEVKPLLDRLQQAGF 33 (48)
T ss_pred ceehHHHHHHHHHcC-------ChhhHHHHHHHHHHcCc
Confidence 789999985433332 22245555666656665
Done!