RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3913
(423 letters)
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like
protein. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 and LANCL2 (testes-specific adriamycin
sensitivity protein) are thought to be peptide-modifying
enzyme components in eukaryotic cells. Both proteins are
produced in large quantities in the brain and testes and
may have role in the immune surveillance of these
organs.
Length = 343
Score = 368 bits (946), Expect = e-126
Identities = 155/361 (42%), Positives = 220/361 (60%), Gaps = 19/361 (5%)
Query: 59 YTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGD 118
YTG G+ Y+ + + P + TY A Y+ A+ + +FLCG+
Sbjct: 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIK------ASLRAIPDDRRISFLCGN 54
Query: 119 AGIHAVLGVFYNAVGD-KERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGII 177
AG++AV Y+ + D E + L + + DE L GRAGYL ++
Sbjct: 55 AGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSG---LPDELLYGRAGYLYALL 111
Query: 178 WAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGIL 237
+ ++ G + + +IC+A++ SGR+ + CPLMY ++G EYLGA HGL+GIL
Sbjct: 112 FLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGIL 171
Query: 238 QVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHW 297
+LL ++ P + IK ++D+LL LQ P+GNFP+ L + LV W
Sbjct: 172 YILLQTPLFL-LKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKR--------DRLVQW 222
Query: 298 CHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLL 357
CHGAPG++YL+AKAYL + EE+YL + IKCGE+IW++GLLKKGPG+CHG++GN YAFLLL
Sbjct: 223 CHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLL 282
Query: 358 YRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAF 417
YRLT D +YL++A FA F+++ FK AR+PD PFSL+EGLAGTACF DL+QP +A F
Sbjct: 283 YRLTGDLKYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGF 342
Query: 418 P 418
P
Sbjct: 343 P 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein.
Lanthionines are thioether bridges that are putatively
generated by dehydration of Ser and Thr residues
followed by addition of cysteine residues within the
peptide. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 (P40 seven-transmembrane-domain protein) and
LANCL2 (testes-specific adriamycin sensitivity protein)
are thought to be peptide-modifying enzyme components in
eukaryotic cells. Both proteins are produced in large
quantities in the brain and testes and may have role in
the immune surveillance of these organs. Lanthionines
are found in lantibiotics, which are peptide-derived,
post-translationally modified antimicrobials produced by
several bacterial strains. This region contains seven
internal repeats.
Length = 352
Score = 243 bits (622), Expect = 3e-77
Identities = 123/371 (33%), Positives = 179/371 (48%), Gaps = 29/371 (7%)
Query: 57 TMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLC 116
++YTG G+ L + + + Y A +YL + L++ I+ F C
Sbjct: 6 SLYTGLAGIALFLLELYK----VTGDEKYLELAHKYLKKIAKSLSSSGRDSIS----FFC 57
Query: 117 GDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGI 176
G AGI A L V +GD + + L I K + + GRAG L +
Sbjct: 58 GLAGIAAALAVASKLLGDYQLLL--DYLKRLLELIENEILEDKNLPYDVISGRAGILLYL 115
Query: 177 IWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGI 236
+ ++LG + L+ I L+ SGR+ + PL+Y +YGT LG HGLSGI
Sbjct: 116 LLLNKELGEEK-VLDLILKILETLLESGRNLASE----SPLLYEWYGTVNLGFAHGLSGI 170
Query: 237 LQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPN-GNFPADLKELYSPTDAKSAANELV 295
L LL N + + IK+ +++ L L+ P+ GN+P + V
Sbjct: 171 LYALLLLYLKGTGNEKLLELIKKALNYELSLKFPDSGNWPDSRGNE---------RDRRV 221
Query: 296 HWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFL 355
WCHGAPG++ + KA EE+ L + EV+W+KGLL K P +CHG+SGN Y L
Sbjct: 222 AWCHGAPGILLALLKAAKALNEEELLEEAEEALEVVWKKGLLLKNPSLCHGLSGNLYILL 281
Query: 356 LLYRLTKDEQYLHKAYLFANFMLSD----DFKRNARMPDAPFSLYEGLAGTACFFIDLMQ 411
LLYRLT DE+YL +A FA +L + R D F L EG+AG F +DL+
Sbjct: 282 LLYRLTNDEKYLERANKFAEKILDYGKELGWLRGLPGGDESFGLMEGIAGILYFLLDLLN 341
Query: 412 PEKAAFPFMDV 422
PE++ FP +
Sbjct: 342 PEESRFPSALL 352
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins. LanC is the cyclase enzyme
of the lanthionine synthetase. Lanthionine is a
lantibiotic, a unique class of peptide antibiotics. They
are ribosomally synthesized as a precursor peptide and
then post-translationally modified to contain thioether
cross-links called lanthionines (Lans) or
methyllanthionines (MeLans), in addition to
2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine
(Dhb). These unusual amino acids are introduced by the
dehydration of serine and threonine residues, followed
by thioether formation via addition of cysteine thiols,
catalysed by LanB and LanC or LanM. LanC, the cyclase
component, is a zinc metalloprotein, whose bound metal
has been proposed to activate the thiol substrate for
nucleophilic addition. A related domain is also present
in LanM and other pro- and eukaryotic proteins of
unknown function.
Length = 343
Score = 213 bits (543), Expect = 1e-65
Identities = 100/370 (27%), Positives = 158/370 (42%), Gaps = 36/370 (9%)
Query: 59 YTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGD 118
Y G G+ +L + + + Y A + L+ + L++ I+ G
Sbjct: 1 YHGAAGIALLLLELYR----VTPDEKYQDLAHKALEYIVKSLSSLPDTDIS----LFSGL 52
Query: 119 AGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAID-----YVKFGGDEFLVGRAGYL 173
AGI L +GD+E + L + + +K + L G AG L
Sbjct: 53 AGIAYALAALSKGLGDQELLKE-------LLELLLLLVELILEDLKDLNYDLLSGLAGLL 105
Query: 174 AGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGL 233
++ + G +I LE I + L+ G++ MY G LG HGL
Sbjct: 106 LALLLLYKTFGEEI-FLELIRKILDYLLELGKNGDGKIRW---PMYFPEGRVNLGLAHGL 161
Query: 234 SGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANE 293
+GIL LL + +E IK + + +LQ +G F P+ +
Sbjct: 162 AGILLALLLLYK-KTVDKSLEALIKALLKYERRLQDDSGGFW-------WPSRSNGGNRF 213
Query: 294 LVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL-KKGPGICHGVSGNGY 352
LV WCHGAPG++ + AY G++KY + K E+ W++GLL K PG+CHG++GN
Sbjct: 214 LVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLL 273
Query: 353 AFLLLYRLTKDEQYLHKAYLFANFMLS---DDFKRNARMPDAPFSLYEGLAGTACFFIDL 409
LLLY+LT D ++L +A A ++S D L GLAG A + L
Sbjct: 274 ILLLLYKLTGDLKFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALLRL 333
Query: 410 MQPEKAAFPF 419
+ P+++
Sbjct: 334 LNPKRSWPSP 343
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins. LanM is a bifunctional
enzyme, involved in the synthesis of class II
lantibiotics. It is responsible for both the dehydration
and the cyclization of the precursor-peptide during
lantibiotic synthesis. The C-terminal domain shows
similarity to LanC, the cyclase component of the lan
operon, but the N terminus seems to be unrelated to the
dehydratase, LanB.
Length = 825
Score = 85.5 bits (212), Expect = 9e-18
Identities = 82/397 (20%), Positives = 131/397 (32%), Gaps = 52/397 (13%)
Query: 34 KIIQSVLIN-----VDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLK 88
++I+ LIN + + + + +Y G+ G+ L Y+ Q + Y
Sbjct: 460 RLIRFSLINWIGLVLSDGDEWELSPLGNDLYDGSAGIALFLAYLGQ----LTGDERYTRL 515
Query: 89 ARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGD---KERSQCHFDMY 145
AR+ LD+L L+ K T AF G GI L + D ++ D+
Sbjct: 516 ARKILDSLVKSLSELKTD-DTGIGAF-SGLGGILYALTHLGKLLKDDRLLNLAKEILDLI 573
Query: 146 TKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGR 205
+L + +D+ G AG+I L +S + + G
Sbjct: 574 DELIEKDEKLDF--ISG----------AAGLILVLLSLYELFLSER----FLDLALKCGD 617
Query: 206 SYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLL 265
+ + + G HG SGI LL V + K + + +
Sbjct: 618 HLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALL-RLYKVTGDSRYLKLAHKALKYE- 675
Query: 266 KLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVI---YLMAKAYLFWGEEKYLN 322
F + +A WCHGAPG++ + K EE L
Sbjct: 676 -----RRLFSEEGWNWPRKDGNSFSAA----WCHGAPGILLARLELLKFNDLDDEE--LK 724
Query: 323 SCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDF 382
I+ K +CHG GN L + DE+ A A +L
Sbjct: 725 EEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVL-SQG 783
Query: 383 KRNARMPDAP-----FSLYEGLAGTACFFIDLMQPEK 414
K+N + P L GLAG + L P++
Sbjct: 784 KKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDR 820
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 68.4 bits (168), Expect = 3e-12
Identities = 82/408 (20%), Positives = 131/408 (32%), Gaps = 75/408 (18%)
Query: 29 KEEADKIIQSVLINVD-------ANADITKHK-----IDHTMYTGNLGVGY---MLWYVA 73
K+ AD+++ + + D N + + + + +Y G G+ L +
Sbjct: 553 KKIADRLLDNAIEGDDDSVSWIGLNLSFDEERWSLGPLGNDLYDGLAGIALFLAYLAALT 612
Query: 74 QSPIYASEAPTYYLKA----RRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFY 129
Y KA R+YL+ + AF G GI L
Sbjct: 613 GKKRYRD----LARKALQPLRKYLETQLRLAK------SMGLGAF-SGLGGIIYALAHLG 661
Query: 130 NAVGDKERSQCHFDMYTKLATHI-KAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIM 188
+ D E + ++ + + I + D + G AG + ++ L
Sbjct: 662 QLLNDSE----LLNDAKRILNRLEELIIKDEEFLD-LIGGAAGAILVLL----NLYEVT- 711
Query: 189 SLEDRTAICNALILSGRSYSQANNL--RCPLMYHYYGTEYLGACHGLSGILQVLLCEKNY 246
D + A+ QA G HG +GI LL
Sbjct: 712 --GDPEVLELAIACGEHLLKQAVKEEGGIAWKTPQDEKPLTGFSHGAAGIAWALL-RLYK 768
Query: 247 VKSNPDIEKDIKETVDFLLKLQMP-NGNFPADLKELYSPTDAKSAANELVHWCHGAPGVI 305
V + + KE + + L P GN+P DL+E P+ V WCHGAPG++
Sbjct: 769 VTGDQRYLEAAKEALAYERSLFDPEEGNWP-DLREEAGPSF-------PVAWCHGAPGIL 820
Query: 306 Y--LMAKAYLFWGE-----EKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLY 358
L L E E L + +K G +CHG GN L
Sbjct: 821 LSRLGLLEILDDDEIDEDIEIALETTLKLG--------FGDNDSLCHGDLGNLEILLEAA 872
Query: 359 RLTKDEQYLHKA-----YLFANFMLSDDFKRNARMPDAPFSLYEGLAG 401
++ DE+ A + A + ++ L GLAG
Sbjct: 873 KVLDDEELQELARRIASQVLARLTKNGRYRLGLPRGVESPGLMTGLAG 920
Score = 49.2 bits (118), Expect = 3e-06
Identities = 72/353 (20%), Positives = 119/353 (33%), Gaps = 62/353 (17%)
Query: 28 WKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYL 87
+++ A K +Q L + ++G G+ Y L ++ Q
Sbjct: 617 YRDLARKALQP-LRKYLETQLRLAKSMGLGAFSGLGGIIYALAHLGQ----LLNDSELLN 671
Query: 88 KARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTK 147
A+R L+ L+ ++ + D + G AG VL Y GD E +
Sbjct: 672 DAKRILNRLEELIIKDEE--FLDL---IGGAAGAILVLLNLYEVTGDPEVLEL----AIA 722
Query: 148 LATH-IKAIDYVKFG-------GDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNA 199
H +K + G ++ L G + AGI WA +L + A
Sbjct: 723 CGEHLLKQAVKEEGGIAWKTPQDEKPLTGFSHGAAGIAWALLRLYKVTGDQRYLEAA-KE 781
Query: 200 LILSGRSYSQANNLRCPLMYHYYGTEYLGA-CHGLSGILQVLLCEKNYVKSNPDIEKDIK 258
+ RS P + G + A CHG GIL L + + +I++DI+
Sbjct: 782 ALAYERSLFDPEEGNWPDLREEAGPSFPVAWCHGAPGILLSRLGLLEILD-DDEIDEDIE 840
Query: 259 ETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGV--IYLMAKAYLFWG 316
++ LKL + + CHG G I L A L
Sbjct: 841 IALETTLKLGFGDND----------------------SLCHGDLGNLEILLEAAKVL--D 876
Query: 317 EEKYLNSCIKCGEVIWEK----GLLKKG-------PGICHGVSGNGYAFLLLY 358
+E+ + + + G + G PG+ G++G GY L L
Sbjct: 877 DEELQELARRIASQVLARLTKNGRYRLGLPRGVESPGLMTGLAGIGYGLLRLA 929
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine
synthetase. Lanthinoine is a lantibiotic, a unique class
of peptide antibiotics. They are ribosomally synthesized
as precursor peptides and then post-translationally
modified to contain thioether cross-links called
lanthionines (Lans) or methyllanthionines (MeLans) in
addition to 2,3-didehydroalanine (Dha) and
(Z)-2,3-didehydrobutyrine (Dhb). These unusual amino
acids are introduced by the dehydration of serine and
threonine residues, followed by thioether formation via
addition of cysteine thiols, catalysed by LanB and LanC
or LanM. LanC, the cyclase component, is a zinc
metalloprotein, whose bound metal has been proposed to
activate the thiol substrate for nucleophilic addition.
Length = 382
Score = 48.9 bits (117), Expect = 3e-06
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 17/152 (11%)
Query: 227 LGACHGLSGILQVL-LCEKNYVKSNPDIEKDIKETVDFLLK--LQMPNGNFPADLKELYS 283
LG HG++G L +L L ++ ++ + +E I++ + +L + L+ G
Sbjct: 168 LGLAHGIAGPLALLALAKERGIRVDGQLEA-IQKIIAWLDRWRLKNRKG-PWWPGLITNR 225
Query: 284 PTDAKSAANELVH---WCHGAPGV---IYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL 337
N WC+G PG+ + L KA ++K + K + +
Sbjct: 226 EQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKAL---DDQKLQEAAEKILKAALKDKKQ 282
Query: 338 KKG---PGICHGVSGNGYAFLLLYRLTKDEQY 366
P +CHG++G + F LLY+ T ++
Sbjct: 283 LSKLISPTLCHGLAGLLFIFYLLYKDTNTNEF 314
Score = 37.7 bits (88), Expect = 0.008
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 231 HGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSA 290
GLSGI + LL + + ++ ++I + + +L + + + P++ +S
Sbjct: 105 SGLSGIGRYLL---LRHEPDSELLREILDYLVYLTEPLNQDIT--LYIWSENQPSETESK 159
Query: 291 ANELVHWC----HGAPGVIYLMAKAYL 313
H HG G + L+A A
Sbjct: 160 EFPEGHINLGLAHGIAGPLALLALAKE 186
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain
associated with serine threonine kinases. Some members
of this subgroup lack the zinc binding site and the
active site residues, and therefore are most likely
inactive. The function of this domain is unknown.
Length = 321
Score = 43.1 bits (102), Expect = 1e-04
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 340 GPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLS----DDFKRNARMPDAPFSL 395
G+ HG +G L LY+ T D +YL A + L+ DD A
Sbjct: 134 DHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLP 193
Query: 396 Y--EGLAGTACFFIDLMQ 411
Y G AG + L
Sbjct: 194 YLCSGSAGLGLLMLRLEA 211
Score = 38.9 bits (91), Expect = 0.004
Identities = 45/263 (17%), Positives = 73/263 (27%), Gaps = 53/263 (20%)
Query: 173 LAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHG 232
AGI W +LG R +L S + +L G
Sbjct: 46 RAGIAWVLIELGH-----PARAKALFDTLLDEPSANLNIDL----------------ASG 84
Query: 233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAAN 292
L+GI LL +P + + + + L + + G+ +
Sbjct: 85 LAGIGLALLYF--ARTGDPALLEAAAKIAELLAE-ALERGDPALLWPDFDR--------- 132
Query: 293 ELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSC-------IKCGEVIWEKGLLKKG----- 340
HG G+ + + Y G+ +YL + V L
Sbjct: 133 VDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLL 192
Query: 341 PGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLA 400
P +C G +G G L L +T D+++ + A L+ G A
Sbjct: 193 PYLCSGSAGLGLLMLRLEAITGDKRW---RDEADGIAHAA-----LSSCYANPGLFSGTA 244
Query: 401 GTACFFIDLMQPEKAAFPFMDVF 423
G DL A
Sbjct: 245 GLGAHLNDLAAEGDNALYKAAAE 267
Score = 32.7 bits (75), Expect = 0.31
Identities = 38/213 (17%), Positives = 67/213 (31%), Gaps = 32/213 (15%)
Query: 220 HYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKET-VDFLLK--LQMPNGNFPA 276
+ G HG +GI LL Y + ++ E +D L + G
Sbjct: 128 PDFDRVDHGLLHGWAGIALFLLRL--YKATGDSRYLELAEEALDKELARAVVDDGGLLQV 185
Query: 277 DLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGL 336
D P + C G+ G+ LM + G++++ + I
Sbjct: 186 DEGARLLP-----------YLCSGSAGLGLLMLRLEAITGDKRWR----DEADGIA-HAA 229
Query: 337 LKKG---PGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPF 393
L PG+ G +G G L + Y A A ++++ + +
Sbjct: 230 LSSCYANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIEGPVFPGD- 288
Query: 394 SLYE-------GLAGTACFFIDLMQPEKAAFPF 419
G AG F + L+ ++ PF
Sbjct: 289 QGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 39.8 bits (93), Expect = 0.003
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 278 LKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLL 337
++ L KS + ++ G GVI ++ Y E K+L I G ++ EK +
Sbjct: 725 IRHLE-ILVQKSKDPDFIN---GLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVG 780
Query: 338 -----KKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKA 370
G HG SG L LY T +E L K
Sbjct: 781 NDSSETVLLGFSHGASGIILTLLKLYEATGEESLLKKI 818
Score = 35.5 bits (82), Expect = 0.060
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 5/128 (3%)
Query: 288 KSAANELVHWCHGA----PGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGI 343
KS N L GA G Y + K Y + + S + K P
Sbjct: 681 KSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDF 740
Query: 344 CHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTA 403
+G++G + +Y+LT + ++L A L + N G +G
Sbjct: 741 INGLAGVICVLVSIYKLTDEPKFLELAISLGRI-LMEKIVGNDSSETVLLGFSHGASGII 799
Query: 404 CFFIDLMQ 411
+ L +
Sbjct: 800 LTLLKLYE 807
Score = 28.2 bits (63), Expect = 9.8
Identities = 37/187 (19%), Positives = 57/187 (30%), Gaps = 31/187 (16%)
Query: 249 SNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAK---SAANELV---------- 295
+ D ET LL L +LY T + EL+
Sbjct: 775 MEKIVGNDSSET--VLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERMKFSDK 832
Query: 296 --HWCHGAPGVIY---LMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGN 350
WC GAPG++ L+ K Y ++ + +K GL +CHG G
Sbjct: 833 FTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIIN---NGL--GNDSLCHGDFGI 887
Query: 351 GYAFLLLYRLTKDEQYLHKAYLFANFMLSDDF-----KRNARMPDAPFSLYEGLAGTACF 405
LL Y + L ++ L + + F L G+ G
Sbjct: 888 -IEVLLHYAKILSDSELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYS 946
Query: 406 FIDLMQP 412
+ + P
Sbjct: 947 LLRISSP 953
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 37.0 bits (86), Expect = 0.020
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 305 IYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICH-----GVSGNG----YAFL 355
I +A+A G+ +YL + + + I + + + G YAFL
Sbjct: 417 IAALAEAGRVLGDPEYLEAAERAADFILDNLY---VDRLLRRYRGGEAAVAGLLEDYAFL 473
Query: 356 L-----LYRLTKDEQYLHKAYLFANFMLSD 380
+ LY T D YL KA A+ ++D
Sbjct: 474 ILGLLALYEATGDLAYLEKAIELADEAIAD 503
>gnl|CDD|130749 TIGR01688, dltC, D-alanine--poly(phosphoribitol) ligase, subunit 2.
This protein is part of the teichoic acid operon in
gram-positive organisms. Gram positive organisms
incorporate teichoic acid in their cell walls, and in
the fatty acid residues of the glycolipid component of
the outer layer of the cytoplasmic membrane. This gene,
dltC, encodes the alanyl carrier protein [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 73
Score = 31.0 bits (70), Expect = 0.17
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 235 GILQVL--LCEKNYVKSNPDIEK------DIKETVDFLLKLQ 268
G+L +L + + VK NPD+E D TV LL++Q
Sbjct: 3 GVLDILAEVTGSDDVKENPDLELFEEGLLDSFGTVQLLLEIQ 44
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 589
Score = 33.2 bits (76), Expect = 0.26
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 17/136 (12%)
Query: 246 YVKSNPDIEKDIKETVDFLLKLQMPNGN----FPADLKELYSPTDAKSAANELVHWCH-- 299
K +P++EK I E V+ L + Q +G F AD E + + +EL H
Sbjct: 80 ANKGDPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERW-GNLR-PNHELYCAGHLI 137
Query: 300 -GAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGIC-HGVSGNGYAFLLL 357
G K L + + + PG C H A L
Sbjct: 138 EGGVAAHQATGKRRLLDVVCRLADHIATV-----FGPEEDQVPGYCGHP--EIELALAEL 190
Query: 358 YRLTKDEQYLHKAYLF 373
YRLT D++YL A F
Sbjct: 191 YRLTGDQRYLDLARRF 206
>gnl|CDD|204022 pfam08673, RsbU_N, Phosphoserine phosphatase RsbU, N-terminal
domain. RsbU is a phosphoserine phosphatase which acts
as a positive regulator of the general stress-response
factor of gram positive organisms, sigma-B. The
phosphatase activity of RsbU is stimulated by
association with the RsbT kinase. Deletions in the N
terminal domain are deleterious to the activity of RsbU.
Length = 77
Score = 29.9 bits (68), Expect = 0.38
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 242 CEKNYVKS-NPDIEKDIKETVDFLLKLQMPNG 272
K+ ++ NPD+ +D+ ++ D LL++ + G
Sbjct: 43 IHKSVLEELNPDLPEDVLDSFDVLLEVMVGYG 74
>gnl|CDD|130387 TIGR01320, mal_quin_oxido, malate:quinone-oxidoreductase. This
membrane-associated enzyme is an alternative to the
better-known NAD-dependent malate dehydrogenase as part
of the TCA cycle. The reduction of a quinone rather than
NAD+ makes the reaction essentially irreversible in the
direction of malate oxidation to oxaloacetate. Both
forms of malate dehydrogenase are active in E. coli;
disruption of this form causes less phenotypic change.
In some bacteria, this form is the only or the more
important malate dehydrogenase [Energy metabolism, TCA
cycle].
Length = 483
Score = 31.0 bits (70), Expect = 1.4
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 241 LCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVH--WC 298
LCE NY D DI + V + Q+ F A L E TD KS N + H +
Sbjct: 55 LCELNYTPEMADGSIDIAKAVGINEQFQVSR-QFWAHLVEEGILTDPKSFINPVPHVSFV 113
Query: 299 HGAPGVIYLMAK 310
HG+ GV YL +
Sbjct: 114 HGSDGVAYLKKR 125
>gnl|CDD|219421 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.
Unsaturated glucuronyl hydrolase catalyzes the
hydrolytic release of unsaturated glucuronic acids from
oligosaccharides (EC:3.2.1.-) produced by the reactions
of polysaccharide lyases.
Length = 342
Score = 30.0 bits (68), Expect = 2.0
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 296 HWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCG-EVIWEKGLLKKGPGICHGVSGNGYAF 354
W +G +Y M AY + G++ YL+ I E G + I G
Sbjct: 28 DWTNGV--FLYGMLLAYEYTGDDAYLDYAKAWVDSFIDEGGKPYELDHID-----IGLTL 80
Query: 355 LLLYRLTKDEQYL 367
L LY LTKDE+Y
Sbjct: 81 LDLYELTKDERYR 93
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases. This
family of enzymes catalyzes the cyclization of the
triterpenes squalene or 2-3-oxidosqualene to a variety
of products including hopene , lanosterol ,
cycloartenol, amyrin, lupeol and isomultiflorenol.
Length = 621
Score = 30.1 bits (68), Expect = 2.7
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 239 VLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNG 272
V+ + +I ++ +++L + Q +G
Sbjct: 444 VIQALGAFGHRADEIRNVLERALEYLRREQRADG 477
Score = 28.9 bits (65), Expect = 5.6
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 222 YGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKEL 281
+G Y +G +L L ++ P+++K D+LL QMP+G + D
Sbjct: 483 WGVNYT---YGTGFVLSALAAAGRTYRNCPEVQK----ACDWLLSRQMPDGGWGEDCFSY 535
Query: 282 YSPTDAKSAANELVHWC 298
P+ S +
Sbjct: 536 EDPSYVGSGGSTPSQTG 552
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 29.6 bits (67), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 169 RAGYLAGIIWAERQLGRQIMSLEDRTAICNALIL 202
RA Y I + Q+GR + +L++ + N +IL
Sbjct: 267 RAAYYGLITHIDHQIGRFLQALKEFGLLDNTIIL 300
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47. Members
of this family are alpha-mannosidases that catalyze the
hydrolysis of the terminal 1,2-linked alpha-D-mannose
residues in the oligo-mannose oligosaccharide
Man(9)(GlcNAc)(2).
Length = 445
Score = 29.5 bits (67), Expect = 3.9
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 356 LLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDA 391
LYRLT D +Y + ++ R P
Sbjct: 359 YLYRLTGDPKYREWGWEIFQ-----AIEKYTRTPCG 389
>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated.
Length = 101
Score = 27.6 bits (62), Expect = 3.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 252 DIEKDIKETVDFLLKLQMPNG 272
DI ET+D L+KL +P G
Sbjct: 78 DIYYPSSETIDSLMKLDLPPG 98
>gnl|CDD|225748 COG3207, DIT1, Pyoverdine/dityrosine biosynthesis protein
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 330
Score = 29.1 bits (65), Expect = 4.2
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 72 VAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDY 111
+A+ + A L R Y +N ++ +
Sbjct: 4 IAEDTLPARVLKELLLYRRFYPENRQSASENDEINRGEQV 43
>gnl|CDD|109758 pfam00714, IFN-gamma, Interferon gamma.
Length = 119
Score = 27.8 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 14 DLNKGGSL-VENFTVWKEEAD-KIIQSVLI 41
D+ GG L ++ WKEE+D KIIQS ++
Sbjct: 21 DVADGGPLFLDILRNWKEESDKKIIQSQIV 50
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 29.1 bits (65), Expect = 5.0
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 237 LQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLK 279
L+ LL +Y+ + D+ +++LL LQ +G F D
Sbjct: 89 LKALLLAGDYIAVDRI---DLARALNWLLSLQNEDGGFREDGP 128
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 28.7 bits (64), Expect = 7.0
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 70 WYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHR---CITDYSA 113
WY ++ IY+S+ P L + LD + + + H + D S
Sbjct: 17 WYSPETGIYSSKHPPVPLPSDPNLDAVSFIFSHHNHNGDTALIDSST 63
>gnl|CDD|226678 COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase
involved in regulation of bacterial surface properties,
and related proteins [General function prediction only].
Length = 357
Score = 28.1 bits (63), Expect = 8.9
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 296 HWCHGAPGVIYLMAKAYLFWGEEKYLNSCIK-CGEVIWEKGLLKKGPGICHGVSGNGYAF 354
W G +Y +A+AY G+ +YL+ E I E GL P G
Sbjct: 35 DWEQGV--FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGL----PPRNIDHIAAGLTL 88
Query: 355 LLLYRLTKDEQYLHKAYLFANFMLSD 380
L LY T D +YL A A++++ +
Sbjct: 89 LPLYEQTGDPRYLEAAIKLASWLVHE 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.437
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,865,562
Number of extensions: 2128160
Number of successful extensions: 1903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1812
Number of HSP's successfully gapped: 53
Length of query: 423
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 323
Effective length of database: 6,502,202
Effective search space: 2100211246
Effective search space used: 2100211246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)