RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3913
(423 letters)
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein;
2.60A {Homo sapiens} PDB: 3e73_A*
Length = 411
Score = 279 bits (713), Expect = 2e-90
Identities = 136/424 (32%), Positives = 206/424 (48%), Gaps = 36/424 (8%)
Query: 7 RHFINRLDLNKGGSLVENFTVWKEEADKIIQSV------LINVDANADITKHKIDHTMYT 60
R F N F + Q + L+ + D T YT
Sbjct: 16 RAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTGYT 75
Query: 61 GNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAG 120
G G+ + ++ P Y A Y+ N L + FLCGDAG
Sbjct: 76 GWAGIAVLYLHLYDV----FGDPAYLQLAHGYVKQSLNCLTKRSI-------TFLCGDAG 124
Query: 121 IHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAE 180
AV V Y+ + ++++++ + I +E L GR GY+ +++
Sbjct: 125 PLAVAAVLYHKMNNEKQAE------DCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVN 178
Query: 181 RQLGRQIMSLEDRTAICNALILSGRSYSQANNL--RCPLMYHYYGTEYLGACHGLSGILQ 238
+ G + + IC ++ SG + ++ N + PLMY +Y Y+GA HGL+GI
Sbjct: 179 KNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYY 238
Query: 239 VLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWC 298
L+ V + +K +VD++ +L+ P+GN+P + + + LVHWC
Sbjct: 239 YLMQPSLQVS-QGKLHSLVKPSVDYVCQLKFPSGNYPPCIGD---------NRDLLVHWC 288
Query: 299 HGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLY 358
HGAPGVIY++ +AY + EEKYL +C +VIW+ GLLKKG G+CHG +GN YAFL LY
Sbjct: 289 HGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLY 348
Query: 359 RLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFP 418
LT+D +YL++A FA + L + + R PD PFSL+EG+AGT F DL+ P KA FP
Sbjct: 349 NLTQDMKYLYRACKFAEWCL-EYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFP 407
Query: 419 FMDV 422
++
Sbjct: 408 AFEL 411
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel,
biosynthetic protein; 2.21A {Lactococcus lactis subsp}
SCOP: a.102.6.1 PDB: 2g02_A
Length = 409
Score = 196 bits (500), Expect = 6e-59
Identities = 64/405 (15%), Positives = 132/405 (32%), Gaps = 27/405 (6%)
Query: 29 KEEADKIIQSVLINVDANADITKHKI---DHTMYTGNLGVGYMLWYVAQSPIYASEAPTY 85
K+ + ++ ++ D K + T+ TG G+ ML + + Y
Sbjct: 1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKN----KDNSKIY 56
Query: 86 YLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMY 145
K Y++ + + L+T + S + G AGI + + + Y
Sbjct: 57 QKKIDNYIEYIVSKLSTYG---LLTGSLY-SGAAGIALSILHLREDDEKYKNLLDSLNRY 112
Query: 146 TKLATHIK----AIDYVKFGGDEFLVGRAGYLAGIIWAERQLG----RQIMSLEDRTAIC 197
+ K ++ + + + G +G L+ ++ + I++
Sbjct: 113 IEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKILIINFLSNLTKE 172
Query: 198 NALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDI 257
N ++S S+ + + G +G HGL+G+ +L SN +
Sbjct: 173 NNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSAL 232
Query: 258 KETVDFLLKLQMPNGNFPA-----DLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAY 312
++ + K ++ EL + A+ WC+G PG+ L
Sbjct: 233 QKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGG 292
Query: 313 LFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYL 372
L + +++ K E ++ L ICHG SG L RL +++
Sbjct: 293 LALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEE 352
Query: 373 FANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAF 417
F + ++ EG++G +
Sbjct: 353 FNVNS---EQILEEYGDESGTGFLEGISGCILVLSKFEYSINFTY 394
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 2e-11
Identities = 69/500 (13%), Positives = 135/500 (27%), Gaps = 191/500 (38%)
Query: 5 NTRHFINRLD-LNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNL 63
TR +I + D L + + V + + ++ L+ + ++ G L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--------GVL 159
Query: 64 GVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHA 123
G G K +A +C +
Sbjct: 160 GSG------------------------------KTWVA-----------LDVCLSYKVQC 178
Query: 124 VL--GVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGII---- 177
+ +F+ + + + +M KL I D R+ + + I
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----------DPNWTSRSDHSSNIKLRIH 228
Query: 178 WAERQLGRQIM------SL------EDRTAI------CNALILSGRSYSQANNLRCPLMY 219
+ +L R + L ++ A C L+ + R + L
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTT 287
Query: 220 HYYGTE----------------YLG---------ACHG----LSGI---LQVLLCE-KNY 246
H YL LS I ++ L N+
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 247 VKSNPD-IEKDIKETVDFLLKLQMPNGNFPADLKELYS-----PTDAKSAANELVHWCHG 300
N D + I+ +++ L PA+ ++++ P A L
Sbjct: 348 KHVNCDKLTTIIESSLNVL---------EPAEYRKMFDRLSVFPPSAHIPTILLS----- 393
Query: 301 APGVIYLMAKAYLFWGEEKY------LNSCIKCGEVIWEKGLLKKGP-----GICHGVSG 349
L W + +N K L++K P I +
Sbjct: 394 ------------LIWFDVIKSDVMVVVNKLHK-------YSLVEKQPKESTISI-PSI-- 431
Query: 350 NGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFI-- 407
+L L ++E LH++ + ++ + F + +P Y I
Sbjct: 432 ----YLELKVKLENEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQ-Y------FYSHIGH 479
Query: 408 ---DLMQPEKAA-FP--FMD 421
++ PE+ F F+D
Sbjct: 480 HLKNIEHPERMTLFRMVFLD 499
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology,
protein structure initiati midwest center for structural
genomics; 1.90A {Klebsiella pneumoniae subsp} PDB:
3qwt_A
Length = 382
Score = 52.0 bits (124), Expect = 2e-07
Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 15/155 (9%)
Query: 240 LLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCH 299
LL + + +++ I+ L+ ++ +G F L + D K A W H
Sbjct: 14 LLRQPERFIARSELQALIRNVTQNLVNIKDESGQFLLRLDD-GRVIDTKGWAG--WEWTH 70
Query: 300 GAPGVIYLMAKAYLFWGEEKYLNSCIKCGE-VIWEKGLLKKGPGICHGVSGNGYAFLLLY 358
G +Y + + Y G+ + + + E K + +
Sbjct: 71 GV--GLYGIYQYYQQTGDIEMRDIIDRWFADRFAEGATTKNVNTMA-----PFLTLAYRF 123
Query: 359 RLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPF 393
T YL +A + + R
Sbjct: 124 EETGRMAYLPWLESWAEWAM----HEMPRTEQGGM 154
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Bacillus subtilis}
SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Length = 373
Score = 40.5 bits (94), Expect = 7e-04
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 296 HWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFL 355
H+ G + + + + GE++Y +++ + G
Sbjct: 40 HYHQGV--FLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGLILF 97
Query: 356 LLYRLTKDEQYLHKAYLFANFM 377
LY TKDE+Y+ A +
Sbjct: 98 PLYEQTKDERYVKAAKRLRSLY 119
Score = 27.4 bits (60), Expect = 8.8
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 352 YAFLLLYRLTKDEQYLHKAYLFANFMLSDD 381
L L+ T +++Y A +A+ ++ D+
Sbjct: 48 CGVLRLWEATGEKRYFEYAKAYADLLIDDN 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 97/541 (17%), Positives = 154/541 (28%), Gaps = 199/541 (36%)
Query: 1 MGDANTRHFINRLDLNKGGSLVENFTV----W------KEEADKIIQSVLINVDANADIT 50
M +TR L+ G SL V + +E+ +KI+ A D
Sbjct: 1 MDAYSTRPLT----LSHG-SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF-AADDEP 54
Query: 51 KHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYY--LKA------RRYLDNLKNV--L 100
+ L VG L YV+ S + S+ + L YL+ ++ L
Sbjct: 55 TTPAE-------L-VGKFLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDIHAL 104
Query: 101 A-----------TKKHRCITDY----------------SAFL----CGDAGIHAVLG--- 126
A K I +Y SA G+A + A+ G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 127 ----VFYNAVGDKE-RSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAER 181
F +E R + Y L + + A L+ +I
Sbjct: 165 NTDDYF------EELRDL--YQTYHVLV-------------GDLIKFSAETLSELIRTTL 203
Query: 182 ------QLGRQIMS-LEDRTAICNALILSGRSYSQANNLRCPL-----MYHYYGT-EYLG 228
G I+ LE+ + + L S CPL + HY T + LG
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS------CPLIGVIQLAHYVVTAKLLG 257
Query: 229 ACHG-LSGILQ-VLLCEKNYV--------KSNPDIEKDIKETVDFLLKL------QMPNG 272
G L L+ + V S +++ + L + PN
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 273 NFPADLKELYSPTDAKSAANELVHWCHGAPG---VIYLMAKAYLFWGEEKYL---NSCIK 326
+ P + E S N G P I + + + + Y+ NS +
Sbjct: 318 SLPPSILE-------DSLENN-----EGVPSPMLSISNLTQEQV----QDYVNKTNSHLP 361
Query: 327 CGEVIWEKGL-LKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRN 385
G+ + + L G VSG + LY L L K A
Sbjct: 362 AGKQV---EISLVNGAK-NLVVSGPPQS---LYGL---NLTLRK--AKA-----PSGLDQ 404
Query: 386 ARMP---------------DAPF-SLYEGLAG-TACFFIDLM------QPEKAAFPFMDV 422
+R+P +PF S L + DL+ + P V
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIP---V 459
Query: 423 F 423
+
Sbjct: 460 Y 460
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 16/39 (41%)
Query: 254 EK-DIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAA 291
EK +K KLQ A LK LY+ A + A
Sbjct: 18 EKQALK-------KLQ-------ASLK-LYADDSAPALA 41
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A
{Anabaena SP}
Length = 388
Score = 32.9 bits (74), Expect = 0.18
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 20/93 (21%)
Query: 305 IYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNG------------- 351
++ + + K +N + I + G+ + + G
Sbjct: 244 MWFIMDIARRKNDSKTINQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLW 303
Query: 352 -------YAFLLLYRLTKDEQYLHKAYLFANFM 377
A + YRLT + ++
Sbjct: 304 WVHLESLVALAMGYRLTGRDACWAWYQKMHDYS 336
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative;
HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 445
Score = 32.8 bits (74), Expect = 0.22
Identities = 16/152 (10%), Positives = 41/152 (26%), Gaps = 25/152 (16%)
Query: 252 DIEKDIKETVDFLLK------LQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVI 305
++KDI ++ K + G D + + A L + G
Sbjct: 31 QVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGV--TY 88
Query: 306 YLMAKAYLFWGEEKYLNSCIKCGEVI-----WEKGLLKKGPGICHGVSGN---------- 350
+ A G+++Y + + K + ++ +
Sbjct: 89 SALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDSQLLQILTPHALDDAG 148
Query: 351 --GYAFLLLYRLTKDEQYLHKAYLFANFMLSD 380
A + L + + +F+++
Sbjct: 149 AVCTAMIKLRLKDESLPVDGLIQNYFDFIINK 180
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN
protein structure initiative; 2.30A {Vibrio
parahaemolyticus}
Length = 586
Score = 32.1 bits (72), Expect = 0.41
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 19/149 (12%)
Query: 250 NPDIEKDIKETVDFLLKLQMPNGNFPADL------------KELYSPTDAKSAANELVHW 297
+ ++ DFL+++Q G F + Y + +
Sbjct: 189 RTRLIEEALFGADFLVRMQNEKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDDYQAGF 248
Query: 298 CHGAPGVIYLMAKAYLFWG-EEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGY---- 352
G I +A A E E + + G
Sbjct: 249 RQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQYLNDGEENIIDEYCA 308
Query: 353 --AFLLLYRLTKDEQYLHKAYLFANFMLS 379
A + L++ TK+ +YL ++ L+A +++
Sbjct: 309 LLASVELFKATKETRYLEESRLWAQRLVA 337
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside
hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A*
2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Length = 377
Score = 31.5 bits (71), Expect = 0.55
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 282 YSPTDAKSAANELVHWCHGA-PGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKG 340
S K N+ W G G+++L Y + G+E+Y ++ E+ +
Sbjct: 27 VSDGSNKYVLNDNTDWTDGFWSGILWLC---YEYTGDEQYREGAVRTVASFRERLDRFEN 83
Query: 341 PGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLS 379
+ + + + KDE A A+ ++
Sbjct: 84 LDHHNIGFLYSLSAKAQWIVEKDESARKLALDAADVLMR 122
Score = 30.3 bits (68), Expect = 1.0
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 352 YAFLLLYRLTKDEQYLHKAYLFANFMLS 379
Y F L R + L A A L+
Sbjct: 228 YGFALNSRYLGNADLLETAKRMARHFLA 255
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 30.0 bits (67), Expect = 1.6
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 20/106 (18%)
Query: 305 IYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNG------------- 351
I L Y E KYL +K E + + + G + G++
Sbjct: 156 IILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDG-FVEDGINRLEDGTIDYEWKFTYN 214
Query: 352 -----YAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAP 392
A L LYR+TK+ YL A A L + + D
Sbjct: 215 QGVYIGANLELYRITKEAIYLDTANKTAAISL-KELTEDGIFKDEG 259
Score = 27.7 bits (61), Expect = 7.9
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 350 NGYAFLL---LYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPD 390
N +L LY + +YL A + + + + D
Sbjct: 152 NAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDGFVED 195
Score = 27.7 bits (61), Expect = 9.0
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 351 GYAFLLLYRLTKDEQYLHKAYLFANFMLS 379
A LY+ T YL A L ++
Sbjct: 98 ALAAYRLYKATGKSIYLEDAQLVWQDLVD 126
>3mfn_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative, midwest center for
structural genomics; HET: MSE; 2.02A {Dyadobacter
fermentans}
Length = 157
Score = 28.6 bits (63), Expect = 2.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 88 KARRYLDNLKNVLATKKHRCITDYSAF----LCGDAGIHAVLGVFYNAVGDKERSQCHFD 143
+A+RYL+N K++L K + Y + G VL + G K + + D
Sbjct: 37 EAKRYLNNAKDILRDKGGKEDGFYQDSKYVKMAGHTAYSGVLFALDHYFGKKTKGRKDVD 96
Query: 144 MY-TKLATHIKAI 155
Y + LA K I
Sbjct: 97 WYKSNLAQQDKKI 109
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A
{Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Length = 397
Score = 28.8 bits (64), Expect = 3.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 352 YAFLLLYRLTKDEQYLHKAYLFANFMLS 379
Y L YR KD Q + N+ L+
Sbjct: 253 YGIPLSYRKMKDYQQIILFKGMTNYFLN 280
>2r2c_A 28 kDa outer membrane protein OMP28; lipoprotein, structural
genomics, PSI, MCSG, protein initiative; 1.80A
{Porphyromonas gingivalis}
Length = 183
Score = 28.2 bits (62), Expect = 3.9
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 9 FINRLDLNKGGSLVENFTVWKEEADKIIQSVL-INVDANADIT---KHKIDHTMY---TG 61
++R +++ W + ++ IN+ A A+ T K K+
Sbjct: 22 MVSRKKFGSSYVYDKSYKTWDVPIAEQMEQKAKINIFAVAEYTDTQKIKVTVKGKILEGN 81
Query: 62 NLGVGYMLWYVAQSPIYASEAP 83
L + Y+ + + A +
Sbjct: 82 TLPKSMVQVYLLEDKLIAPQVD 103
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 481
Score = 28.2 bits (63), Expect = 5.8
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 253 IEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAY 312
D++ +D P S +++ + G+ VI LM
Sbjct: 169 CLADLQPLLDDDPG-------------AEVLPWSYSSYSSKGIRASRGS--VIALMMHIN 213
Query: 313 LFWGEEKYLNSCIKCGEVIWEKGLLKKGPG 342
L+ + N V+ L++ G
Sbjct: 214 LWLVQFDAQNKEQYYRNVVSLGEELERNNG 243
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 27.9 bits (63), Expect = 7.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 43 VDANADITKHKIDHTMYTGNLGVG 66
V ++ K + DH +YTG+ GVG
Sbjct: 186 VPETTELLKERFDHILYTGSTGVG 209
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 27.9 bits (61), Expect = 8.3
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 243 EKNYVKSNPDIEKD---IKETVDFLLKLQMPNGNFPADL 278
KNY K P + F + LQ +G++ D
Sbjct: 60 TKNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDY 98
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa}
SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Length = 332
Score = 27.3 bits (60), Expect = 9.3
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 248 KSNPDIEKDIKETVDFLLKLQMPNGNFPA 276
N +++ +FL+ Q G P
Sbjct: 90 GGNTKYRDAVRKAANFLVNSQYSTGALPQ 118
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase,
PSI-2; 1.70A {Xylella fastidiosa}
Length = 402
Score = 27.5 bits (60), Expect = 9.6
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 16/89 (17%)
Query: 305 IYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNG------------- 351
L+ + E + +V + G+C+G + +G
Sbjct: 254 AKLLLILDRYIEVEWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFWVQA 313
Query: 352 ---YAFLLLYRLTKDEQYLHKAYLFANFM 377
A LL + DE+Y +
Sbjct: 314 ESLAAAALLATRSGDERYWQWYDRLWAYA 342
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.437
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,683,675
Number of extensions: 408795
Number of successful extensions: 928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 34
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)