RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3913
(423 letters)
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
{Lactococcus lactis [TaxId: 1358]}
Length = 409
Score = 188 bits (478), Expect = 4e-56
Identities = 61/403 (15%), Positives = 126/403 (31%), Gaps = 27/403 (6%)
Query: 29 KEEADKIIQSVLINVDANADITKHKIDH---TMYTGNLGVGYMLWYVAQSPIYASEAPTY 85
K+ + ++ ++ D K D T+ TG G+ ML + + Y
Sbjct: 1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNK----DNSKIY 56
Query: 86 YLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDK----ERSQCH 141
K Y++ + + L + S + G AGI + + +
Sbjct: 57 QKKIDNYIEYIVSKL---STYGLLTGSLY-SGAAGIALSILHLREDDEKYKNLLDSLNRY 112
Query: 142 FDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLG----RQIMSLEDRTAIC 197
+ + + ++ + + + G +G L+ ++ + I++
Sbjct: 113 IEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKILIINFLSNLTKE 172
Query: 198 NALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDI 257
N ++S S+ + + G +G HGL+G+ +L SN +
Sbjct: 173 NNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSAL 232
Query: 258 KETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANE-----LVHWCHGAPGVIYLMAKAY 312
++ + K ++ L + K WC+G PG+ L
Sbjct: 233 QKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGG 292
Query: 313 LFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYL 372
L + +++ K E ++ L ICHG SG L RL +++
Sbjct: 293 LALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEE 352
Query: 373 FANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKA 415
F ++ EG++G
Sbjct: 353 FNVNSE---QILEEYGDESGTGFLEGISGCILVLSKFEYSINF 392
Score = 38.3 bits (88), Expect = 0.001
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 345 HGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTAC 404
G+ G L + Y K + +++ SLY G AG A
Sbjct: 35 TGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIV-SKLSTY---GLLTGSLYSGAAGIAL 90
Query: 405 FFIDLMQPEKAAFPFMD 421
+ L + ++ +D
Sbjct: 91 SILHLREDDEKYKNLLD 107
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 39.3 bits (91), Expect = 6e-04
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 282 YSPTDAKSAANELVHWCHGA-PGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKG 340
S K N+ W G G+++L + G+E+Y ++ E+ +
Sbjct: 27 VSDGSNKYVLNDNTDWTDGFWSGILWLCYEYT---GDEQYREGAVRTVASFRERLDRFEN 83
Query: 341 PGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSD 380
+ + + KDE A A+ ++
Sbjct: 84 LDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRR 123
Score = 26.2 bits (57), Expect = 7.9
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 344 CHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLS 379
G + Y F L R + L A A L+
Sbjct: 220 TRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLA 255
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
[TaxId: 1423]}
Length = 363
Score = 33.2 bits (75), Expect = 0.061
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 296 HWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFL 355
H+ G + + + + GE++Y +++ + G
Sbjct: 30 HYHQGV--FLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGLILF 87
Query: 356 LLYRLTKDEQYLHKAYLFANFM 377
LY TKDE+Y+ A +
Sbjct: 88 PLYEQTKDERYVKAAKRLRSLY 109
Score = 27.8 bits (61), Expect = 2.8
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 352 YAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRN 385
L L+ T +++Y A +A+ ++ D+
Sbjct: 38 CGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLL 71
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 441
Score = 32.7 bits (74), Expect = 0.074
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 22/153 (14%)
Query: 251 PDIEKDIKETVDFLLKLQMPNGNFPADLK------ELYSPTDAKSAANELVHWCHGAPG- 303
PD ++K +D++L +Q P+G+ K + + + V W A
Sbjct: 108 PDFLDELKYEIDWILTMQYPDGSGRVAHKVSTRNFGGFIMPENEHDERFFVPWSSAATAD 167
Query: 304 VIYLMAKAYLFWGE--EKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAF------- 354
+ + A A + +Y CI +V +E + + +
Sbjct: 168 FVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDAD 227
Query: 355 ------LLLYRLTKDEQYLHKAYLFANFMLSDD 381
++ DE+YL A
Sbjct: 228 DRLWAAAEMWETLGDEEYLRDFENRAAQFSKKI 260
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 32.4 bits (73), Expect = 0.089
Identities = 17/126 (13%), Positives = 25/126 (19%), Gaps = 34/126 (26%)
Query: 316 GEEKYLNSCIKCGEVIWEKGL-LKKGPGICHGVSGNG----------------YAFLLLY 358
L G + V +G LY
Sbjct: 269 PPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALY 328
Query: 359 RLTKDEQYLHKAYLFANFM---------------LSDDFKRNARMPDAPFSLYEGLAGTA 403
LT D QY + ++ L D K ++ D +Y
Sbjct: 329 TLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYH--LLHC 386
Query: 404 CFFIDL 409
L
Sbjct: 387 LVIPRL 392
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 402
Score = 32.5 bits (73), Expect = 0.11
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 21/96 (21%)
Query: 305 IYLMAKAYLFWGEEKYLNSCIK-CGEVIWEKGLLKKGPGICHGVSGNG------------ 351
+ + + G+ K I + + G G+ + +G
Sbjct: 253 GWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKL 312
Query: 352 --------YAFLLLYRLTKDEQYLHKAYLFANFMLS 379
AFL+ Y + D L Y A +
Sbjct: 313 WWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFR 348
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
cellulolyticum [TaxId: 1521]}
Length = 431
Score = 29.2 bits (65), Expect = 0.89
Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 24/182 (13%)
Query: 251 PDIEKDIKETVDFLLKL---------QMPNGNFPADLKELYSPTDAKSAANELVHWCHGA 301
+ + +K D+ LK Q+ GN + + A
Sbjct: 92 TKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYWGAPEEQTGQRPSLYKADPSSPA 151
Query: 302 P----GVIYLMAKAYLFW--GEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNG---- 351
+ YL + + Y C+ + ++ G +G G
Sbjct: 152 SDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKANQGVGNGQSFYQATSFGD 211
Query: 352 ---YAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFID 408
+A LY T D Y+ A F L + N + A
Sbjct: 212 DLAWAATWLYTATNDSTYITDAEQFIT--LGNTMNENKMQDKWTMCWDDMYVPAALRLAQ 269
Query: 409 LM 410
+
Sbjct: 270 IT 271
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans
[TaxId: 920]}
Length = 82
Score = 27.3 bits (59), Expect = 0.92
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 344 CHGVSGNGYAFLLLYRLT-KDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSL-YEGLAG 401
CHG++G + ++ RL + + Y+ D M +L +
Sbjct: 8 CHGMTGRDTLYPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITA 67
Query: 402 TACFFIDLMQPEKAA 416
A +F P +++
Sbjct: 68 LADYFNAQKPPMQSS 82
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Cellvibrio cellulosa [TaxId: 155077]}
Length = 324
Score = 28.3 bits (63), Expect = 1.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 250 NPDIEKDIKETVDFLLKLQMPNGNFPA 276
N +++ +FL+ Q G P
Sbjct: 84 NTKYRDAVRKAANFLVNSQYSTGALPQ 110
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
CbhA {Clostridium thermocellum [TaxId: 1515]}
Length = 511
Score = 28.2 bits (62), Expect = 2.3
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 35/153 (22%)
Query: 251 PDIEKDIKETVDFLLKLQMPNGNFPADLKELYSP-TDAKSAANELVHWCHGAPGVIY--- 306
PDI + + ++F K+Q+ P+ ++ D + A ++ P +
Sbjct: 129 PDILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVS 188
Query: 307 ---------LMAKAYLFW--GEEKYLNSCIKCGEVIWEKGLLKKGPGI----CHGVSGNG 351
+A++ W + + C++ E+ W+ K P I G G G
Sbjct: 189 TAATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQ--AALKHPDIYAEYTPGSGGPG 246
Query: 352 YAF--------------LLLYRLTKDEQYLHKA 370
LY T ++Y +
Sbjct: 247 GGPYNDDYVGDEFYWAACELYVTTGKDEYKNYL 279
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 26.5 bits (58), Expect = 6.5
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 352 YAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFS 394
+ LYR+T D +Y + + F R R+P +S
Sbjct: 358 ESLFYLYRVTGDRKYQDWGW-----EILQSFSRFTRVPSGGYS 395
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680
{Nitrosomonas europaea [TaxId: 915]}
Length = 85
Score = 24.7 bits (54), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 127 VFYNAVGDKERSQCHFDMYTKLATHIKAIDYVK 159
V+ V K+ HFD++T + KAI++ K
Sbjct: 5 VYDTYVKAKDGHVMHFDVFTDVRDDKKAIEFAK 37
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 26.1 bits (57), Expect = 8.7
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 219 YHYYGTEYL---GACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNF 274
Y Y +EYL G GL+ + ++ + +E + F+ Q G
Sbjct: 31 YEYCMSEYLRMSGVYWGLTV-MDLM---------GQLHRMNKEEILVFIKSCQHECGGV 79
>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga
maritima [TaxId: 2336]}
Length = 126
Score = 25.3 bits (55), Expect = 9.7
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 231 HGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSA 290
+ + L L + + ++ E + + P+ + YS +A+
Sbjct: 52 YSVPDFLGEL---SSRFEIPEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERL 108
Query: 291 ---ANELVHWC 298
A +++ +C
Sbjct: 109 VNYAEKIIRFC 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.437
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,651,831
Number of extensions: 78736
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 26
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)