RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3914
(852 letters)
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 56.9 bits (138), Expect = 5e-09
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 41/233 (17%)
Query: 81 GKKKGSNEKV---TIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLA 137
+ K + +KV I DS+ E L ++ LK L HP+I+ E + +YL
Sbjct: 12 ARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENH--LYLV 69
Query: 138 VEYVEP--IFYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFI 195
+EY E + L + +E + + I + QI L +L + + H + +I +
Sbjct: 70 MEYCEGGSLKDLLKENEGKLSEDEILRI---LLQILEGLEYL-HSNGIIHRDLKPENILL 125
Query: 196 NS-CGEWKLGGLEYMEKISEASCIPM-KRYSRYEDQSTYQIPE--NSLSHVTKCSTDMYG 251
+S G+ KL + ++ + + Y PE + ++ +D++
Sbjct: 126 DSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPA-----YMAPEVLLGKGYYSE-KSDIWS 179
Query: 252 LGILIWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLELISERPNQRPNPADFI 304
LG++++E+ LK + +++ + P +RP+ + +
Sbjct: 180 LGVILYEL--------------------PELKDLIRKMLQKDPEKRPSAKEIL 212
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 54.2 bits (131), Expect = 8e-08
Identities = 50/259 (19%), Positives = 95/259 (36%), Gaps = 60/259 (23%)
Query: 81 GKKKGSNEKVTI--FLNDSAD--TYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYL 136
K KG+ + V + S + A ++ L+ L HP+I+ +D+ E +YL
Sbjct: 18 AKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFEDKDH--LYL 75
Query: 137 AVEYVEPI-FYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRHNH-VNHT--- 191
+EY E + + +E + I+ QI R L +L H++ + H
Sbjct: 76 VMEYCEGGDLFDYLSRGGPLSEDEAKKIAL---QILRGLEYL-------HSNGIIHRDLK 125
Query: 192 --SIFINSCGEWKLG--GLEYMEKISEASCIPMKRYSRYEDQ---STYQIPE---NSLSH 241
+I ++ G K+ GL + +K S Y PE +
Sbjct: 126 PENILLDENGVVKIADFGL---------AKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGY 176
Query: 242 VTKCSTDMYGLGILIWEVFNG--PLQSTNRK----------------SLSNIDNIPENLK 283
K D++ LG++++E+ G P N + E K
Sbjct: 177 GPKV--DVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAK 234
Query: 284 RVYLELISERPNQRPNPAD 302
+ + +++ P++RP +
Sbjct: 235 DLIKKCLNKDPSKRPTAEE 253
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 46.9 bits (111), Expect = 2e-05
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 22/166 (13%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKE-----NNEK 158
A+ V LK L+H +I+T D + + + L +F +LD+ LK+ N
Sbjct: 50 AIREVSLLKNLKHANIVTLHDIIHT-ERCLTL--------VFEYLDSDLKQYLDNCGNLM 100
Query: 159 KQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCI 218
+ +FQ+ R LS+ + + H + ++ IN GE KL ++ A +
Sbjct: 101 SMHNVKIFMFQLLRGLSY-CHKRKILHRDLKPQNLLINEKGELKLADF----GLARAKSV 155
Query: 219 PMKRYSRYEDQSTYQIPENSLSHVTKCST--DMYGLGILIWEVFNG 262
P K YS E + + P + L T+ ST DM+G+G +++E+ G
Sbjct: 156 PTKTYSN-EVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATG 200
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 46.3 bits (111), Expect = 2e-05
Identities = 61/248 (24%), Positives = 97/248 (39%), Gaps = 61/248 (24%)
Query: 89 KVTIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFY 146
K N S E AL+ VK LK L HP+I+ + +S E K + + +EY + +
Sbjct: 31 KEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFE--EKGKLCIVMEYADGGDLSQ 88
Query: 147 HLDNTLKENN--EKKQIYISWGIF-QITRALSFLINDADLRH-NHVNH----TS-IFINS 197
+ KE ++QI F Q+ AL +L H + H IF+ S
Sbjct: 89 KIKKQKKEGKPFPEEQI---LDWFVQLCLALKYL-------HSRKILHRDIKPQNIFLTS 138
Query: 198 CGEWKLG--GLEYMEKISEASCIPMKRYSRYEDQSTYQI-------PE--NSLSHVTKCS 246
G KLG G IS K S D + + PE + + K
Sbjct: 139 NGLVKLGDFG------IS-------KVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYK-- 183
Query: 247 TDMYGLGILIWEVFNG--PLQSTNRKSLSN------IDNIPE----NLKRVYLELISERP 294
+D++ LG +++E+ P + N L+ IP L+ + L+ + P
Sbjct: 184 SDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDP 243
Query: 295 NQRPNPAD 302
+RP+ A
Sbjct: 244 EERPSIAQ 251
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 45.4 bits (107), Expect = 7e-05
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKE-----NNEK 158
A+ V LK L+H +I+T D + + KSL +F +LD LK+ N
Sbjct: 51 AIREVSLLKDLKHANIVTLHDIIHT-EKSLTL--------VFEYLDKDLKQYLDDCGNSI 101
Query: 159 KQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCI 218
+ +FQ+ R L++ + + H + ++ IN GE KL ++ A I
Sbjct: 102 NMHNVKLFLFQLLRGLNY-CHRRKVLHRDLKPQNLLINERGELKLADF----GLARAKSI 156
Query: 219 PMKRYSRYEDQSTYQIPENSLSHVTKCST--DMYGLGILIWEVFNG-PL 264
P K YS E + + P + L T ST DM+G+G + +E+ G PL
Sbjct: 157 PTKTYSN-EVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPL 204
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 44.4 bits (106), Expect = 1e-04
Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 52/247 (21%)
Query: 81 GKKKGSNEKV---TIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLA 137
+ K + + V I E L +K LK L+HP+I+ D E K +YL
Sbjct: 18 ARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDEDK--LYLV 75
Query: 138 VEYVE--PIFYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRH-NHVNHT--- 191
+EY E +F L + + ++ + Y + QI AL +L H + H
Sbjct: 76 MEYCEGGDLFDLLKKRGRLSEDEARFY----LRQILSALEYL-------HSKGIVHRDLK 124
Query: 192 --SIFINSCGEWKLG--GLEYMEKISEASCIPMKRYS----RYEDQSTYQIPE--NSLSH 241
+I ++ G KL GL + K + Y PE +
Sbjct: 125 PENILLDEDGHVKLADFGL------ARQLDPGEKLTTFVGTPE-----YMAPEVLLGKGY 173
Query: 242 VTKCSTDMYGLGILIWEVFNG--PLQSTNRKSLSNIDNIPENLKRVYLELISERPNQRPN 299
D++ LG++++E+ G P + + + + + + + P
Sbjct: 174 GKAV--DIWSLGVILYELLTGKPPFPGDD-----QLLELFKKIGKPKPPFPPPEWDISPE 226
Query: 300 PADFIMR 306
D I +
Sbjct: 227 AKDLIRK 233
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 44.2 bits (104), Expect = 2e-04
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKE-----NNEK 158
A+ V LK L+H +I+T D V + KSL +F +LD LK+ N
Sbjct: 51 AIREVSLLKDLKHANIVTLHDIVHT-DKSLTL--------VFEYLDKDLKQYMDDCGNIM 101
Query: 159 KQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCI 218
+ ++QI R L++ + + H + ++ IN GE KL ++ A +
Sbjct: 102 SMHNVKIFLYQILRGLAY-CHRRKVLHRDLKPQNLLINERGELKLADF----GLARAKSV 156
Query: 219 PMKRYSRYEDQSTYQIPENSLSHVTKCST--DMYGLGILIWEVFNG-PL 264
P K YS E + + P + L ++ ST DM+G+G + +E+ +G PL
Sbjct: 157 PTKTYSN-EVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPL 204
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 43.1 bits (102), Expect = 3e-04
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 24/167 (14%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEP-IFYHLD---NTLKENNEKK 159
A+ LK L+H +I+T D + + K+L L EY++ + ++D L +N +
Sbjct: 50 AIREASLLKDLKHANIVTLHDIIHT-KKTLT-LVFEYLDTDLKQYMDDCGGGLSMHNVR- 106
Query: 160 QIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG--GLEYMEKISEASC 217
++ +FQ+ R L++ + + H + ++ I+ GE KL GL + A
Sbjct: 107 -LF----LFQLLRGLAY-CHQRRVLHRDLKPQNLLISERGELKLADFGL------ARAKS 154
Query: 218 IPMKRYSRYEDQSTYQIPENSLSHVTKCST--DMYGLGILIWEVFNG 262
+P K YS E + + P + L T+ ST DM+G+G + +E+ G
Sbjct: 155 VPSKTYSN-EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATG 200
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 43.1 bits (102), Expect = 3e-04
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 82 KKKGSNEKVTI--FL--NDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLA 137
+ K + E V I F D D + AL VK L+ LRH +I+ ++ + +YL
Sbjct: 21 RNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGR--LYLV 78
Query: 138 VEYVEPIFYHLDNTLKENNEKKQ-----IYISWGIFQITRALSFLINDADLRHNHVNHTS 192
EYVE TL E E + I+Q+ +A+++ + ++ H + +
Sbjct: 79 FEYVE-------RTLLELLEASPGGLPPDAVRSYIWQLLQAIAYC-HSHNIIHRDIKPEN 130
Query: 193 IFINSCGEWKL---GGLEYMEKISEASCIPMKRYSRYEDQSTYQIPENSLSHVT-KCSTD 248
I ++ G KL G + P + Y Y+ PE + D
Sbjct: 131 ILVSESGVLKLCDFGFARAL------RARPASPLTDYVATRWYRAPELLVGDTNYGKPVD 184
Query: 249 MYGLGILIWEVFNG-PL 264
++ +G ++ E+ +G PL
Sbjct: 185 VWAIGCIMAELLDGEPL 201
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 42.9 bits (102), Expect = 4e-04
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 47/172 (27%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEK----- 158
AL + LK L+HP+I+ LD + + K +YL EY + L L +
Sbjct: 45 ALREISLLKELKHPNIVKLLDVIHTERK--LYLVFEYCD---MDLKKYLDKRPGPLSPNL 99
Query: 159 -KQIYISWGIFQITRALSFLINDADLRHNH-VNH-----TSIFINSCGEWKLG--GLEYM 209
K I ++Q+ R L++ H+H + H +I IN G KL GL
Sbjct: 100 IKSI-----MYQLLRGLAYC-------HSHRILHRDLKPQNILINRDGVLKLADFGL--- 144
Query: 210 EKISEASCIPMKRYSRYEDQST--YQIPENSLSHVTKCSTDMYGLGILIWEV 259
+ A IP++ Y+ + T Y+ PE L + Y + IW V
Sbjct: 145 ---ARAFGIPLRTYT--HEVVTLWYRAPEILL------GSKHYSTAVDIWSV 185
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 41.3 bits (95), Expect = 0.002
Identities = 54/307 (17%), Positives = 103/307 (33%), Gaps = 23/307 (7%)
Query: 94 LNDSADTYEPALSYVKKLKTLRHPS-ILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDN 150
L + E L ++ L +L HP I+ D + YL +EYV+ + L
Sbjct: 34 LESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSL--YLVMEYVDGGSLEDLLKK 91
Query: 151 TLKENNEKKQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEW-KLGGLEYM 209
++ + + + QI AL +L + + H + +I ++ G KL
Sbjct: 92 IGRKGPLSESEALFI-LAQILSALEYL-HSKGIIHRDIKPENILLDRDGRVVKLIDFGLA 149
Query: 210 EKISEASCIPMKRYSRYEDQST--YQIPENSLSHVTK---CSTDMYGLGILIWEVFNGPL 264
+ + + T Y PE L S+D++ LGI ++E+ G
Sbjct: 150 KLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLP 209
Query: 265 QSTNRKSLSNIDNIPENLKRVYLELISERPNQRPNPA------DFIMR--NRKPGGYF-- 314
K+ S + + + ++ + D + + + P
Sbjct: 210 PFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSS 269
Query: 315 KNDLIDALLFLEEIQMKDKIDKNKFFNGLASAIDKFPKLISCHKVLPQLINAFEYGEAGA 374
+DL LL +++ D D K + + P L + L L + +
Sbjct: 270 SSDLSHDLLAHLKLKESDLSDLLKPDDSAPLRLSLPPSLEALISSLNSLAISGSDLKLDD 329
Query: 375 SVLSPLF 381
S S
Sbjct: 330 SNFSKEL 336
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 553 ILPALCQLSTDPEKSVRDSAFKTIKGFL 580
+LP L +L DP+ VR++A + +
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALA 28
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 40.9 bits (96), Expect = 0.003
Identities = 40/242 (16%), Positives = 65/242 (26%), Gaps = 26/242 (10%)
Query: 555 PALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESMEADVHTATPSLSNAAATW 614
PA S P+ S + + + A ++ + ++
Sbjct: 123 PASPPPSPAPDLS---EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS- 178
Query: 615 ADWAVTAVTSKFYRSQSETLKTSRGPTRPSGRFLSKPASLEASSASSMSTTTTASSVASL 674
+ A +S T P S P S ASS + + A +
Sbjct: 179 PEETARAPSSP---PAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235
Query: 675 ASSLEHEGEGGSASKGESMSDYDETPWESETWGDMESSSNDTTKVGVLDPTSSQTTERQG 734
+S G E +E P + + G P+S
Sbjct: 236 SSDSSSSESSGCGWGPE-----NECPLPRPAPITLPTRIW--EASGWNGPSSRPGPASSS 288
Query: 735 GSDGGDGWDLDDWRSLEDTPSPSMPPPLQPSQSWAMSNSLSAMSLQENGLTSPSSDVNST 794
S PSPS P + S S+ S +E+ +S SS S+
Sbjct: 289 SSPRERS------------PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336
Query: 795 GG 796
G
Sbjct: 337 RG 338
Score = 32.1 bits (73), Expect = 1.7
Identities = 30/182 (16%), Positives = 45/182 (24%), Gaps = 10/182 (5%)
Query: 631 SETLKTSRGPTRPSGRFLSKPASLEASSASSMSTTTTASSVASLASSLEHEGEGGSASKG 690
SE L+ P P + A+ AS +++ A+ S A
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194
Query: 691 ESMSDYDETPWESETWGDMESSSNDTTKVGVLDPTSSQTTERQGGSDGGDGWDLD-DWRS 749
S +P + +S++ SD W
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA---GASSSDSSSSESSGCGWGP 251
Query: 750 LEDTPSPSMPPPLQPSQSWAMSNSLSAMSLQENGLTSPSSDVNSTGGWEDTEWSPIEETE 809
+ P P P P++ W S S G S SS SP
Sbjct: 252 ENECPLPRPAPITLPTRIWEASGWNGPSSRP--GPASSSSSPRERSP----SPSPSSPGS 305
Query: 810 PS 811
Sbjct: 306 GP 307
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 36.3 bits (84), Expect = 0.003
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 527 PPARNAGVLALAATQQ--YFLLSEVAQRILPALCQLSTDPEKSVRDSAFKTI 576
R A LAL A LL +LPAL L D + VR++A +
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWAL 52
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 39.5 bits (93), Expect = 0.005
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 60/231 (25%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLD-----NTLKENNEKKQIYISW 165
L+ L+HP+I+ + D + S +Y+ +EY E D K+ + + W
Sbjct: 53 LRELKHPNIVRYYDRIIDRSNQTLYIVMEYCE----GGDLAQLIQKCKKERKYIEEEFIW 108
Query: 166 GIF-QITRALSFLINDADLR----HNHVNHTSIFINSCGEWKLG--GLEYMEKISEASCI 218
I Q+ AL N +D H + +IF+++ KLG GL
Sbjct: 109 RILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGL------------ 156
Query: 219 PMKRYSRYEDQST-----------YQIPE--NSLSHVTKCSTDMYGLGILIWEVFNG--P 263
++ + Y PE N +S+ K D++ LG LI+E+ P
Sbjct: 157 -----AKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKS--DIWSLGCLIYELCALSPP 209
Query: 264 LQSTNRKSLS------NIDNIP----ENLKRVYLELISERPNQRPNPADFI 304
+ N+ L+ IP L V +++ P++RP+ + +
Sbjct: 210 FTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELL 260
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 39.0 bits (91), Expect = 0.008
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 18/214 (8%)
Query: 74 TFWKFHGGKKKGSNEKVT---IFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPS 130
T+ + G+ + + E V I L+ T A+ + +K L+H +I+ D + + +
Sbjct: 12 TYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTEN 71
Query: 131 KSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRHNHVNH 190
K + L EY++ +T + +Q+ + ++F ++ + H +
Sbjct: 72 K--LMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAF-CHENRVLHRDLKP 128
Query: 191 TSIFINSCGEWKLG--GLEYMEKISEASCIPMKRYSRYEDQSTYQIPENSL-SHVTKCST 247
++ IN GE KL GL + A IP+ +S Y+ P+ L S S
Sbjct: 129 QNLLINKRGELKLADFGL------ARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSI 182
Query: 248 DMYGLGILIWEVFNG-PL--QSTNRKSLSNIDNI 278
D++ +G ++ E+ G PL + N L I I
Sbjct: 183 DIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRI 216
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 38.1 bits (88), Expect = 0.012
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 82 KKKGSNEKVTIF-LNDSA---DTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLA 137
+ K + E V I DS + E L +K L+TL+ +I+ ++ K +YL
Sbjct: 21 RHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGK--LYLV 78
Query: 138 VEYVEPIFYHLDNTLKENN--EKKQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFI 195
EYVE L + EK + YI +Q+ +A+ + + D+ H + ++ I
Sbjct: 79 FEYVEKNMLELLEEMPNGVPPEKVRSYI----YQLIKAIHW-CHKNDIVHRDIKPENLLI 133
Query: 196 NSCGEWKLGGLEYMEKISEASCIPMKRYSRYEDQSTYQIPENSLSHVTKCSTDMYGLGIL 255
+ KL + +SE S Y+ Y Y+ PE L + DM+ +G +
Sbjct: 134 SHNDVLKLCDFGFARNLSEGS---NANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCI 190
Query: 256 IWEVFNG-PL 264
+ E+ +G PL
Sbjct: 191 LGELSDGQPL 200
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 37.7 bits (87), Expect = 0.017
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 36/241 (14%)
Query: 82 KKKGSNEKVTIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
+K + +KV IF A + + + LK L HP+++ +LDS ++ + L +
Sbjct: 27 RKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADA 86
Query: 142 EPIFYHLDNTLKENNEKKQIY---ISWGIF-QITRALSFLINDADLRHNHVNHTSIFINS 197
L +K ++K++ W F Q+ A+ + + + H + ++FI +
Sbjct: 87 G----DLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHM-HSRRVMHRDIKPANVFITA 141
Query: 198 CGEWKLGGLE----YMEKISEASCIPMKRYSRYEDQSTYQIPENSLSHVTKCSTDMYGLG 253
G KLG L + K + A + Y Y PE + +D++ LG
Sbjct: 142 TGVVKLGDLGLGRFFSSKTTAAHSLVGTPY--------YMSPERIHENGYNFKSDIWSLG 193
Query: 254 ILIWE--VFNGPLQSTNRKSLSNIDNI-------------PENLKRVYLELISERPNQRP 298
L++E P S I E L+ + I P+QRP
Sbjct: 194 CLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRP 253
Query: 299 N 299
+
Sbjct: 254 D 254
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 37.3 bits (87), Expect = 0.024
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHL-DNTLKENNEKKQIY 162
AL +K LK L HP+I+ LD +YL E+++ Y L + + E
Sbjct: 45 ALREIKLLKELNHPNIIKLLDVFRHKGD--LYLVFEFMDTDLYKLIKDRQRGLPESLIKS 102
Query: 163 ISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG--GLEYMEKISEASCIPM 220
+ Q+ + L+F + + H + ++ IN+ G KL GL + + P+
Sbjct: 103 YLY---QLLQGLAF-CHSHGILHRDLKPENLLINTEGVLKLADFGL------ARSFGSPV 152
Query: 221 KRYSRYEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEV 259
+ Y+ Y Y+ PE L Y + IW V
Sbjct: 153 RPYTHYVVTRWYRAPELLL------GDKGYSTPVDIWSV 185
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 36.5 bits (85), Expect = 0.042
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISWGIFQI 170
LK L+HP+I+ ++ S+E+ S SL Y+ +EY E L +K+ + ++ ++Q+
Sbjct: 53 LKNLKHPNIVKYIGSIET-SDSL-YIILEYAE--NGSLRQIIKKFGPFPESLVAVYVYQV 108
Query: 171 TRALSFL 177
+ L++L
Sbjct: 109 LQGLAYL 115
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 36.2 bits (83), Expect = 0.052
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 244 KCS--TDMYGLGILIWEVFNGPLQS-------------TNRKSLSNIDNIPENLKRVYLE 288
K S +D++ G+++WEVF+ LQ NR+ L D+ P + + LE
Sbjct: 202 KFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVYTLMLE 261
Query: 289 LISERPNQRPNPADFIMRNR 308
+E P++RP D R R
Sbjct: 262 CWNEFPSRRPRFKDIHSRLR 281
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 35.4 bits (81), Expect = 0.10
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 168 FQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCIPMKRYSRYE 227
+ RALS+L N + H + SI + S G KL + ++S+ +P ++
Sbjct: 125 LSVLRALSYLHNQGVI-HRDIKSDSILLTSDGRIKLSDFGFCAQVSKE--VPKRK--SLV 179
Query: 228 DQSTYQIPE--NSLSHVTKCSTDMYGLGILIWEVFNG--------PLQSTNRKSLSNIDN 277
+ PE + L + T+ D++ LGI++ E+ +G PLQ+ R DN
Sbjct: 180 GTPYWMAPEVISRLPYGTE--VDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIR----DN 233
Query: 278 IPENLK---------RVYLELISER-PNQRPNPADFI 304
+P +K R +L+L+ R P+QR + +
Sbjct: 234 LPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELL 270
>gnl|CDD|233674 TIGR01992, PTS-IIBC-Tre, PTS system, trehalose-specific IIBC
component. This model represents the fused enzyme II B
and C components of the trehalose-specific PTS sugar
transporter system. Trehalose is converted to
trehalose-6-phosphate in the process of translocation
into the cell. These transporters lack their own IIA
domains and instead use the glucose IIA protein (IIAglc
or Crr). The exceptions to this rule are Staphylococci
and Streptococci which contain their own A domain as a
C-terminal fusion. This family is closely related to the
sucrose transporting PTS IIBC enzymes and the B and C
domains of each are described by subfamily-domain level
TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
In E. coli, B. subtilis and P. fluorescens the presence
of this gene is associated with the presence of
trehalase which degrades T6P to glucose and glucose-6-P.
Trehalose may also be transported (in Salmonella) via
the mannose PTS or galactose permease systems, or (in
Sinorhizobium, Thermococcus and Sulfolobus, for
instance) by ABC transporters.
Length = 462
Score = 35.5 bits (82), Expect = 0.11
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 359 VLPQLINAFEYGEAGASVLSPLFKIGQMLEHE--DYQAKIVPCVVKLFGSNDRATRSRLL 416
V PQL+NA+ YG+A A P++ + E + YQ +++P ++ + +L
Sbjct: 194 VHPQLLNAYLYGQALAEGNIPVWDLFGFFEIQKVGYQGQVLPALLAGY----------VL 243
Query: 417 LQLEHFIGH-VPDAI 430
+E ++ VPDAI
Sbjct: 244 AVIEKWLRKRVPDAI 258
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 35.1 bits (81), Expect = 0.11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 248 DMYGLGILIWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLEL 289
D+Y LG+++WE+F G + N + D I + L L
Sbjct: 204 DIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPL 245
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 35.3 bits (82), Expect = 0.11
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 40/168 (23%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEP-----IFYHLDNTLKENNEKKQI-YIS 164
+K +HP+I+ + DS +++ +EY++ I + E QI Y+
Sbjct: 69 MKDCKHPNIVDYYDSYL--VGDELWVVMEYMDGGSLTDIITQNFVRMNE----PQIAYVC 122
Query: 165 WGIFQITRALSFLINDADLRH-NHVNH-----TSIFINSCGEWKLGGLEYMEKISEASCI 218
++ + L +L H +V H +I ++ G KL + ++++
Sbjct: 123 ---REVLQGLEYL-------HSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEK-- 170
Query: 219 PMKRYSR----YEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEVFNG 262
KR S Y + PE D++ LGI+ E+ G
Sbjct: 171 -SKRNSVVGTPY-----WMAPEVIKRKDYGPKVDIWSLGIMCIEMAEG 212
>gnl|CDD|220008 pfam08761, dUTPase_2, dUTPase. 2-Deoxyuridine 5-triphosphate
nucleotidohydrolase (dUTPase) catalyzes the hydrolysis
of dUTP to dUMP and pyrophosphate (EC:3.6.1.23). Members
of this family have a novel all-alpha fold and are
unrelated to the all-beta fold found in dUTPases of the
majority of organisms. This family contains both dUTPase
homologues of dUTPase including dCTPase of phage T4.
Length = 167
Score = 34.3 bits (79), Expect = 0.13
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 315 KNDLIDALLFLEEIQMKDKIDKNKFFNGLAS--AIDKFPKLISCHKVLPQLINAFEYGEA 372
+ +D L FL + ++ F L S ++F ++ + + L + + Y +
Sbjct: 71 LEEYVDGLHFLLSLGIELGTSNEIFIAELISKDLNEQFLEIYALIEDLIENPSKESYDKL 130
Query: 373 GASVLSPLFKIGQML 387
S +G++L
Sbjct: 131 ----FSAFLGLGELL 141
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 34.7 bits (80), Expect = 0.14
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV------EPIFYHLDNTLKENNE 157
AL+ + L L+HP+I+ + + +L + +EY + I +E
Sbjct: 46 ALNEIVILSLLQHPNIIAYYNHFMD-DNTL-LIEMEYANGGTLYDKIVRQKGQLFEEE-- 101
Query: 158 KKQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG 204
+ W +FQI A+S+ I+ A + H + +IF+ G KLG
Sbjct: 102 ----MVLWYLFQIVSAVSY-IHKAGILHRDIKTLNIFLTKAGLIKLG 143
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 34.8 bits (80), Expect = 0.16
Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 32/304 (10%)
Query: 86 SNEKVTIF-LNDSADTYEPA---LSYVKKLKTLRHPSILTFLDSVESPSKSL---VYLAV 138
+ EKV I +ND + A L +K L+ LRHP I+ + PS+ +Y+
Sbjct: 24 TGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVF 83
Query: 139 EYVEPIFYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSC 198
E +E L +K N++ + + ++Q+ RAL + I+ A++ H + +I N+
Sbjct: 84 ELMES---DLHQVIKANDDLTPEHHQFFLYQLLRALKY-IHTANVFHRDLKPKNILANA- 138
Query: 199 GEWKLGGLEY-MEKISEASCIPMKRYSRYEDQSTYQIPENSLSHVTKCST--DMYGLGIL 255
+ KL ++ + +++ ++ Y Y+ PE S +K + D++ +G +
Sbjct: 139 -DCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCI 197
Query: 256 IWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLELISERPNQRPNPADFIMRNRKP---GG 312
EV G + + +D I + L E IS N++ MR ++P
Sbjct: 198 FAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQ 257
Query: 313 YFKNDLIDALLFLEEIQMKDKIDK--------NKFFNGLASAIDKFPKLISCHKVLPQLI 364
F N AL LE + D D+ + +F GLA +++ P S + +L
Sbjct: 258 KFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAK-VEREP---SAQ-PITKLE 312
Query: 365 NAFE 368
FE
Sbjct: 313 FEFE 316
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 34.1 bits (79), Expect = 0.20
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 27/120 (22%)
Query: 232 YQIPENSLSHVTKCSTDMYGLGILIWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLELIS 291
Y PE L+ S D + LGIL++E+ G D P + L+
Sbjct: 158 YVAPEIILNKGYDFSVDYWSLGILLYELLTGRP------PFGEDDEDPMEIYNDILKGNG 211
Query: 292 --ERPNQ-RPNPADFIMR--NRKPG---GYFKNDLIDALLFLEEIQMKDKIDKNKFFNGL 343
E PN D I + R P G K + D I K+K+FNG
Sbjct: 212 KLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKD-------------IKKHKWFNGF 258
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 34.2 bits (78), Expect = 0.23
Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 29/213 (13%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEK---KQIYISWGI 167
L ++HP+I+ F +S E+ +Y+ +EY + L +K K + + W +
Sbjct: 52 LAKMKHPNIVAFKESFEADGH--LYIVMEYCDG--GDLMQKIKLQRGKLFPEDTILQWFV 107
Query: 168 FQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCIPMKRYSRYE 227
Q+ + I++ + H + +IF+ G+ KLG ++ P Y
Sbjct: 108 -QMCLGVQH-IHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTS----PGAYACTYV 161
Query: 228 DQSTYQIPE--NSLSHVTKCSTDMYGLGILIWEV--FNGPLQSTNRKSL------SNIDN 277
Y PE ++ + K +D++ LG +++E+ P Q+ + K+L +
Sbjct: 162 GTPYYVPPEIWENMPYNNK--SDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKP 219
Query: 278 IPEN----LKRVYLELISERPNQRPNPADFIMR 306
+P + L+ + ++ P RP+ + R
Sbjct: 220 LPSHYSYELRSLIKQMFKRNPRSRPSATTILSR 252
>gnl|CDD|220662 pfam10265, DUF2217, Uncharacterized conserved protein (DUF2217).
This is a family of conserved proteins of from 500 - 600
residues found from worms to humans. Its function is not
known.
Length = 515
Score = 34.4 bits (79), Expect = 0.26
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 16/115 (13%)
Query: 581 GKLEQVSENPSLRESMEADVHTATPSLSNAAATWADWAVTAVTSKFYRSQSETLKTSRGP 640
L Q+ +P ++ + + AA V A + R + + G
Sbjct: 4 SSLSQLKLSPGTKKVLFS-----------TAAGVVSLIVLAHFLRRRRGKRKMEGEQLGT 52
Query: 641 TRPSGRFLSKPASLEASSASSMSTTTTASSVASLASSLEHEGEGGSASKGESMSD 695
RP R + K SS S ++ + S ASS GS+ S+SD
Sbjct: 53 RRPLSRKIGKC-----SSRRVRSPSSKPNDTLSGASSKLSSKHSGSSHSLASVSD 102
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 31.5 bits (72), Expect = 0.30
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 815 EESRKRREEKKMARQKELEAKRAA 838
E RK REE+K R++ +E +R
Sbjct: 60 ERERKEREERKEKRKRAIEERRKK 83
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 34.5 bits (79), Expect = 0.30
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 806 EETEPSIKMEESRKRREEKKM-ARQKELEAKRAAKQSGGPLKLGAKK 851
EE E K EE K +E KK+ A QKE +AK A+Q+ + K
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKS 62
>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed.
Length = 147
Score = 32.4 bits (75), Expect = 0.40
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQSGGPLKLGAK 850
+ T+ ++K E+R+ E K A + A K G + + AK
Sbjct: 37 VRATKGNLKQLEARRAELEAKAAEELAEAEALAEKLEGLTVTIKAK 82
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 33.2 bits (76), Expect = 0.48
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 28/181 (15%)
Query: 96 DSADTYEP--ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLK 153
D D P AL + LK L+H +I+ D + S K + +F + D LK
Sbjct: 36 DDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTL---------VFEYCDQDLK 86
Query: 154 E-----NNEKKQIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG--GL 206
+ N + + +FQ+ + L+F + ++ H + ++ IN GE KL GL
Sbjct: 87 KYFDSCNGDIDPEIVKSFMFQLLKGLAF-CHSHNVLHRDLKPQNLLINKNGELKLADFGL 145
Query: 207 EYMEKISEASCIPMKRYSRYEDQSTYQIPENSL-SHVTKCSTDMYGLGILIWEVFNG--P 263
+ A IP++ YS Y+ P+ + + S DM+ G + E+ N P
Sbjct: 146 ------ARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP 199
Query: 264 L 264
L
Sbjct: 200 L 200
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 33.5 bits (76), Expect = 0.52
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 219 PMKRYSRYEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEVFNGPLQSTNRKS 271
PMK+ E S Y PE + C++D+Y LG+L++E+F P+ S KS
Sbjct: 169 PMKQILAME-MSWYTSPEEDNGSSSNCASDVYRLGVLLFELF-CPVSSREEKS 219
>gnl|CDD|220748 pfam10427, Ago_hook, Argonaute hook. This region has been called
the argonaute hook. It has been shown to bind to the
Piwi domain pfam02171 of Argnonaute proteins.
Length = 136
Score = 31.8 bits (72), Expect = 0.56
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 700 PWESETWGDMESSSNDTTKVGVLDPTSSQTTERQGGSDGGDGWDLDDWRSLEDTPSPSMP 759
P S WG+ ++ T+ G D + G +GWD D L +
Sbjct: 27 PNNSGPWGEGRAAGAGTSGWG--DDPVGAPALKPGSKSMQNGWDDKDMPLLGSRHNSWED 84
Query: 760 PPLQPSQSWAMSNS-LSAMSLQENGLTSPSSDVN----STGGWEDTEW 802
W S SA S +G + S V+ W+D W
Sbjct: 85 EESVGGGVWNNKQSQESASSGNSSGWGNASKKVDGGDMGGSNWQDHAW 132
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 32.9 bits (76), Expect = 0.59
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 89 KVTIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
K DS + E ++ L +L+HP+I+ + S K+ + + +EYV
Sbjct: 31 KSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYV 83
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 33.0 bits (75), Expect = 0.59
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 46/246 (18%)
Query: 95 NDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEY-------------- 140
N S+ LS LK + HP ++ + + L VEY
Sbjct: 41 NASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP--LLLIVEYAKYGSLRSFLRESR 98
Query: 141 -VEPIFYHLDNTLKEN----------NEKKQIYISWGIFQITRALSFLINDADLRHNHVN 189
V P + D + I +W QI+R + +L + L H +
Sbjct: 99 KVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAW---QISRGMQYL-AEMKLVHRDLA 154
Query: 190 HTSIFINSCGEWKLGGLEYMEKISEASCIPMKRYSRYEDQSTYQIPENSLSHVTKCSTDM 249
++ + + K+ + E +KR S+ + E+ H+ +D+
Sbjct: 155 ARNVLVAEGRKMKISDFGLSRDVYEEDSY-VKR-SKGRIPVKWMAIESLFDHIYTTQSDV 212
Query: 250 YGLGILIWEVFN---GPLQSTNRKSLSNI----------DNIPENLKRVYLELISERPNQ 296
+ G+L+WE+ P + L N+ +N E + + L + P++
Sbjct: 213 WSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDK 272
Query: 297 RPNPAD 302
RP AD
Sbjct: 273 RPTFAD 278
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 33.4 bits (76), Expect = 0.62
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 753 TPSPSMPPPLQPSQSWA--MSNSLSAMSLQENGLTSPSSDVNSTGGWEDTEWSP-----I 805
P+ S L PS S S S S S Q + + + D ++ G +D+ WSP +
Sbjct: 282 YPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSLWSPSSLCGM 341
Query: 806 EETEPSIKM 814
SI M
Sbjct: 342 ATPPSSIGM 350
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 32.9 bits (75), Expect = 0.64
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISWGI 167
+K LK LRH +I++ D SP + +Y E + + L L +KQ +I + +
Sbjct: 60 LKLLKHLRHENIISLSDIFISPLED-IYFVTELLGTDLHRL---LTSRPLEKQ-FIQYFL 114
Query: 168 FQITRALSFLINDADLRHNHVNHTSIFIN 196
+QI R L ++ + A + H + ++I IN
Sbjct: 115 YQILRGLKYV-HSAGVVHRDLKPSNILIN 142
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 32.5 bits (75), Expect = 0.73
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+K L+ LRHP+I+ + V S K +Y+ EY++
Sbjct: 49 IKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD 83
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 32.6 bits (74), Expect = 0.75
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 38/257 (14%)
Query: 74 TFWKFHGGKKKGSNEKVTI----FLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESP 129
+F K + K K +E I E + V L ++HP+I+TF S +
Sbjct: 12 SFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQEN 71
Query: 130 SKSLVYLAVEYVEPIFYHLDNTLKENN-------EKKQIYISWGIFQITRALSFLINDAD 182
+ +++ +EY + + +K N + QI +SW + QI+ L I+D
Sbjct: 72 GR--LFIVMEYCDG-----GDLMKRINRQRGVLFSEDQI-LSWFV-QISLGLKH-IHDRK 121
Query: 183 LRHNHVNHTSIFINSCGE-WKLGGLEYMEKISEASCIPMKRYSRYEDQSTYQIPENSLSH 241
+ H + +IF++ G KLG +++++ M+ Y PE +
Sbjct: 122 ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDS----MELAYTCVGTPYYLSPEICQNR 177
Query: 242 VTKCSTDMYGLGILIWEV--FNGPLQSTNRKSL------SNIDNIPENLKRVYLELISE- 292
TD++ LG +++E+ P + N L I N R LIS+
Sbjct: 178 PYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQL 237
Query: 293 ---RPNQRPNPADFIMR 306
P RP+ + R
Sbjct: 238 FKVSPRDRPSITSILKR 254
>gnl|CDD|216875 pfam02102, Peptidase_M35, Deuterolysin metalloprotease (M35)
family.
Length = 352
Score = 32.6 bits (74), Expect = 0.80
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 580 LGKLEQVSENPSLRESMEADVHTATPSLSNAAATWADWAVTAVTSKFYRSQSETLKTSRG 639
L + +V+ RES + + L+N AA+ A+ + +SKF E KT+
Sbjct: 172 LDRRTKVTSCSGSRESALSTALSNAVKLANQAASAAE---SGSSSKF----QEYFKTTSS 224
Query: 640 PTRPS--GRFLSKPASLEASSASSMSTT 665
TR + R + + EASS SS STT
Sbjct: 225 STRTTVAARL--RAVAKEASSTSSGSTT 250
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 31.6 bits (72), Expect = 0.87
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 811 SIKMEESRKRREEKKMARQKELEAKRAAKQSGGPLKLGA 849
S +E K+R+++ QKEL+AK A Q G ++ +
Sbjct: 46 SADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALS 84
>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
Length = 206
Score = 31.9 bits (73), Expect = 1.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 583 LEQVSENPSLRE---SMEADVHTATPSLSNAAATW 614
L+Q+S PSLR +E V T T L+N TW
Sbjct: 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTW 116
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 31.6 bits (72), Expect = 1.3
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 235 PENSLSHVTKCSTDMYGLGILIWEVFN-GPLQSTNRKSLSNID------------NIPEN 281
PE L + TD++ G+L+WE+F+ G + R + ++ P
Sbjct: 190 PEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGP 249
Query: 282 LKRVYLELISERPNQRPNPADFIMR 306
+ R+ + P RPN A + R
Sbjct: 250 VYRIMTDCWQHTPEDRPNFATILER 274
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 31.6 bits (72), Expect = 1.4
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE-PIFYHLDNTLKENNEKKQIY 162
A+ + LK L+HP+I+ D + S+ +YL E++ + +LD+ K ++
Sbjct: 46 AIREISLLKELQHPNIVCLQDVLMQESR--LYLIFEFLSMDLKKYLDSLPKGQYMDAELV 103
Query: 163 ISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG--GLEYMEKISEASCIPM 220
S+ ++QI + + F + L H + ++ I++ G KL GL + A IP+
Sbjct: 104 KSY-LYQILQGILFCHSRRVL-HRDLKPQNLLIDNKGVIKLADFGL------ARAFGIPV 155
Query: 221 KRYSRYEDQSTYQIPENSL-SHVTKCSTDMYGLGILIWEV 259
+ Y+ Y+ PE L S D++ +G + E+
Sbjct: 156 RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEM 195
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 29.6 bits (67), Expect = 1.4
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 512 KVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDS 571
+ L+ A DP P R A AL LPAL +L DP+ VR +
Sbjct: 2 EALLEALLS---DPDPEVRAAAARALGELGD--------PEALPALLELLKDPDPEVRRA 50
Query: 572 AFKTIKGFLGKLEQVSENPSLRESMEAD 599
A + LGKL P+L E ++ D
Sbjct: 51 AAEA----LGKLGDPEALPALLELLQDD 74
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 31.4 bits (72), Expect = 1.6
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 26/114 (22%)
Query: 101 YEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEY-----VEPIFYHLDNTLKEN 155
E ++ ++ LK +HP+I+ + S + +++ +E+ ++ + + TL E
Sbjct: 41 KEKIINEIQILKKCKHPNIVKYYGSYLKKDE--LWIVMEFCSGGSLKDLLKSTNQTLTE- 97
Query: 156 NEKKQI-YISWGIFQITRALSFLINDADLRHNHVNH-----TSIFINSCGEWKL 203
QI Y+ + + L + L N + H +I + S GE KL
Sbjct: 98 ---SQIAYVCKELLK---GLEY------LHSNGIIHRDIKAANILLTSDGEVKL 139
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 29.1 bits (66), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 818 RKRREEKKMARQKELEAKRAAKQ 840
RKR E+ + R K+ AK+AA++
Sbjct: 6 RKRNEKLRAKRAKKRAAKKAARK 28
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 31.5 bits (71), Expect = 2.1
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 221 KRYSRYEDQST--YQIPENSLSHVTKCSTDMYGLGILIWEVFNGPL 264
+R+SR ST Y+ PE L STDM+ +G +I+E++ G L
Sbjct: 298 ERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKL 343
>gnl|CDD|213932 TIGR04319, SerAla_Lrha_rpt, surface protein repeat Ser-Ala-175.
This serine and alanine-rich surface protein repeat,
about 175 amino acids long, occurs up to nine times in
surface proteins of some Lactobacillus strains,
particularly in Lactobacillus rhamnosus. Members
proteins have the N-terminal variant signal sequence
described by TIGR03715 and C-terminal LPXTG signals for
surface attachment by sortase.
Length = 175
Score = 30.6 bits (69), Expect = 2.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 618 AVTAVTSKFYRSQSETLKTSRGPTRPSGRFLSKPASLEASSASSMSTTTTASSVASLASS 677
A TA + + + SR P S L+K AS S SS + +AS+ AS ASS
Sbjct: 1 ASTASSVASSANAVASSAASRFPDNQSLASLAKTASSANSVTSSYA--ASASADASAASS 58
Query: 678 L 678
L
Sbjct: 59 L 59
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 31.1 bits (71), Expect = 2.3
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISWGIFQI 170
LK L HP+I+ LD V S +K +YL E+++ ++ + S+ ++Q+
Sbjct: 52 LKELNHPNIVRLLDVVHSENK--LYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSY-LYQL 108
Query: 171 TRALSFLINDADLRHNH-VNH-----TSIFINSCGEWKLG--GLEYMEKISEASCIPMKR 222
+ +++ H+H V H ++ I+ G KL GL + A +P++
Sbjct: 109 LQGIAYC-------HSHRVLHRDLKPQNLLIDREGALKLADFGL------ARAFGVPVRT 155
Query: 223 YSRYEDQSTYQIPENSL-SHVTKCSTDMYGLGILIWEVFNGPLQSTNRKSL----SNIDN 277
Y+ Y+ PE L S D++ +G + E+ NR+ L S ID
Sbjct: 156 YTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEM-------VNRRPLFPGDSEIDQ 208
Query: 278 I 278
+
Sbjct: 209 L 209
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.6 bits (71), Expect = 2.4
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 807 ETEPSIKMEESRKRREEKKMARQKELEAKRAAKQS 841
E E + E R++ +EK+ R++E EA+RAAK S
Sbjct: 591 EAEQKAREEREREKEKEKEREREREREAERAAKAS 625
>gnl|CDD|197564 smart00190, IL4_13, Interleukins 4 and 13. Interleukins-4 and -13
are cytokines involved in inflammatory and immune
responses. IL-4 stimulates B and T cells.
Length = 138
Score = 30.1 bits (68), Expect = 2.4
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 10/129 (7%)
Query: 551 QRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSEN--PSLRESMEADVHTATPSLS 608
Q + LC L S T++ + L V++ E M DV AT
Sbjct: 6 QLVPALLCLLGCTGNGPHGHSCDITLREIIETLNNVTQKGTNLCTEMMVPDVLAAT---K 62
Query: 609 NAAATWADWAVTAVTSKFYRSQ-SETLKTSRGPTRPSGRFLSKPASLEASSASSMSTTTT 667
N V FY S LKT R R S AS + + + TT
Sbjct: 63 NTTEKELFCRALKVLRNFYFHNCSAILKTLRKLDR----NCSGLASQTSCTVNEAKDTTL 118
Query: 668 ASSVASLAS 676
A + L S
Sbjct: 119 ADFLERLKS 127
>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
Length = 2710
Score = 31.7 bits (71), Expect = 2.5
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 513 VLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDSA 572
++++A S+ P A + + A + + A R+ AL LS P+ V +A
Sbjct: 881 IVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATA 940
Query: 573 FKTIKGFLGKLEQVSENPSLRESMEADVHTATPSLSNAAATWAD 616
+ E++S++P LRE+++A + P + NA + W D
Sbjct: 941 ASALA------ERLSDDPDLREALDA---SNLPQVLNALSKWPD 975
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 30.9 bits (70), Expect = 2.8
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV-EPIFYHLDNTLKENNEKKQIY 162
A+ + LK L HP+I+ LD + + +K +YL E++ + + +D + I
Sbjct: 46 AIREISLLKELNHPNIVKLLDVIHTENK--LYLVFEFLHQDLKKFMDASPLSGIPLPLIK 103
Query: 163 ISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCIPMKR 222
S+ +FQ+ + L+F + L H + ++ IN+ G KL ++ A +P++
Sbjct: 104 -SY-LFQLLQGLAFCHSHRVL-HRDLKPQNLLINTEGAIKLADF----GLARAFGVPVRT 156
Query: 223 YSRYEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEV 259
Y+ Y+ PE L Y + IW +
Sbjct: 157 YTHEVVTLWYRAPEILL------GCKYYSTAVDIWSL 187
>gnl|CDD|217527 pfam03387, Herpes_UL46, Herpesvirus UL46 protein.
Length = 443
Score = 31.2 bits (71), Expect = 2.8
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 20/101 (19%)
Query: 613 TWADWAVTAVTSKFYRSQSETLKTSRGPTRPS------GRFLSKPASLEASSASSMSTTT 666
WA W + + ++ R+ T + +RGP GR L ++ S+ S
Sbjct: 213 RWALWFMDLLDARVLRNLGPTPRRTRGPREARAPDDLFGRHLKGGPAI---SSGSGEALA 269
Query: 667 TASSVASLASSLEHEGEGGSASKGESMSDYDETPWESETWG 707
+S A + SL + + W S T G
Sbjct: 270 LTASTADVLGSLLRIS-----------ALWTCCSWRSGTDG 299
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 31.0 bits (70), Expect = 3.0
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 734 GGSDGGDG-------------WDLDDWRSLEDTPSPSMPPPLQPSQSWAMSNSLSAMSLQ 780
GG DG +G WD ED +PS PP + + Q
Sbjct: 18 GGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDRHGGYQPLGQQ 77
Query: 781 ENGLTSPSSDVNSTGGWEDTEWSPIEETEPSIKMEESRKRR 821
+ L + N GG +SP ++ + EE R R
Sbjct: 78 DPSLYAGLGQ-NGGGGLPPPPYSPRDQGSEHV-YEEPRDAR 116
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAA 838
+E E ++EE ++ REE+K +K+L+ ++ A
Sbjct: 42 AKEKEREERIEERKRIREERKQELEKQLKERKEA 75
>gnl|CDD|192464 pfam10159, MMtag, Kinase phosphorylation protein. This is a
glycine-rich domain that is the most highly conserved
region of a family of proteins that in vertebrates are
associated with tumours in multiple myelomas. The region
may contain phosphorylation sites for several protein
kinases, as well as N-myristoylation sites and nuclear
localisation signals, so it might act as a signal
molecule in the nucleus.
Length = 78
Score = 28.4 bits (64), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 797 WEDTEWSPIEETEPSIKMEESRKRREEKKMARQKELEAKRAA 838
D +W E + + EE+ K +EE + ++ E EA AA
Sbjct: 38 GRDLDWYAKGEDDTA---EEAEKLKEEIRRIKEAEEEAMAAA 76
>gnl|CDD|143629 cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium
thermocellum TTM-like subgroup 1. This subgroup
contains the triphosphate tunnel metalloenzyme (TTM)
from Clostridium thermocellum (CthTTM) and similar
proteins. These are found primarily in bacteria. CthTTM
is a metal dependent tripolyphosphatase, nucleoside
triphosphatase, and nucleoside tetraphosphatase. It
hydrolyzes the beta-gamma phosphoanhydride linkage of
triphosphate-containing substrates including
tripolyphosphate, nucleoside triphosphates and
nucleoside tetraphosphates. These substrates are
hydrolyzed, releasing Pi. Mg++ or Mn++ are required for
the enzyme's activity. CthTTM appears to have no
adenylate cyclase activity. This subgroup consists
chiefly of bacterial sequences. These enzymes are
members of the CYTH-like (also known as triphosphate
tunnel metalloenzyme (TTM)-like) superfamily, which have
a unique active site located within an eight-stranded
beta barrel.
Length = 148
Score = 29.8 bits (68), Expect = 3.5
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 7/30 (23%)
Query: 556 ALCQ--LSTDPEKSVR-----DSAFKTIKG 578
+ Q LSTDPE++VR D A+ TIKG
Sbjct: 23 RIRQGYLSTDPERTVRVRIAGDRAYLTIKG 52
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 30.6 bits (69), Expect = 3.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 207 EYMEKISEASCIPMKRYSRYEDQST-------YQIPENSLSHVTKCSTDMYGLGI 254
E++ + PM+ Y Y++ ST Y P+ L + KC D YG G+
Sbjct: 454 ATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKC-MDEYGGGV 507
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 30.2 bits (69), Expect = 4.1
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 74 TFWKFHGGKKKGSNEKVTI---FLNDSADTYE----PALSYVKKLKTLRHPSILTFLDSV 126
T+ + + K + V I L + + + AL +K L+ L+HP+I+ LD
Sbjct: 12 TYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVF 71
Query: 127 ESPSKSLVYLAVEYVEPIFYHLDNTLKENN------EKKQIYISWGIFQITRALSFL--- 177
KS + L E++E L+ +K+ + + K + R L +L
Sbjct: 72 --GHKSNINLVFEFME---TDLEKVIKDKSIVLTPADIKSY-----MLMTLRGLEYLHSN 121
Query: 178 -INDADLRHNHVNHTSIFINSCGEWKLG--GL 206
I DL+ N ++ I S G KL GL
Sbjct: 122 WILHRDLKPN-----NLLIASDGVLKLADFGL 148
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 30.3 bits (68), Expect = 4.2
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 28/206 (13%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE-PIFYHLDNTLKENNEK----KQIYISW 165
L L+HP+I+ + +S E L+Y+ + + E YH LKE K Q+ + W
Sbjct: 53 LSQLKHPNIVAYRESWEG-EDGLLYIVMGFCEGGDLYH---KLKEQKGKLLPENQV-VEW 107
Query: 166 GIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISEASCIPMKRYSR 225
+ QI AL +L ++ + H + ++F+ K+G L + ++ E C S
Sbjct: 108 FV-QIAMALQYL-HEKHILHRDLKTQNVFLTRTNIIKVGDLG-IARVLENQC---DMAST 161
Query: 226 YEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEV--FNGPLQSTNRKSL------SNIDN 277
Y PE + +D++ LG ++E+ + + SL +
Sbjct: 162 LIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPP 221
Query: 278 IPENLKRVYLELI----SERPNQRPN 299
+P++ ELI S+RP +RP+
Sbjct: 222 MPKDYSPELGELIATMLSKRPEKRPS 247
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region. Vac14
is a scaffold for the Fab1 kinase complex, a complex
that allows for the dynamic interconversion of PI3P and
PI(3,5)P2p (phosphoinositide phosphate (PIP) lipids,
that are generated transiently on the cytoplasmic face
of selected intracellular membranes). This
interconversion is regulated by at least five proteins
in yeast: the lipid kinase Fab1p, lipid phosphatase
Fig4p, the Fab1p activator Vac7p, the Fab1p inhibitor
Atg18p, and Vac14p, a protein required for the activity
of both Fab1p and Fig4p. This domain appears to be the
one responsible for binding to Fab1. The full length
Vac14 in yeasts is likely to be a protein carrying a
succession of HEAT repeats, most of which have now
degenerated. This regulatory system is crucial for the
proper functioning of the mammalian nervous system.
Length = 97
Score = 28.3 bits (64), Expect = 4.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 553 ILPALCQLSTDPEKSVRDSA 572
I ALC+L D + SV++ A
Sbjct: 69 IFDALCKLFADSDPSVKNGA 88
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 30.2 bits (68), Expect = 4.5
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDNTLKENNEKKQIYISW 165
V L ++HP+I+ + +S E +Y+ ++Y E ++ ++ + QI + W
Sbjct: 50 VAVLSNMKHPNIVQYQESFE--ENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQI-LDW 106
Query: 166 GIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG 204
+ QI AL ++D + H + +IF+ G KLG
Sbjct: 107 FV-QICLALKH-VHDRKILHRDIKSQNIFLTKDGTIKLG 143
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 30.0 bits (67), Expect = 4.6
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 247 TDMYGLGILIWEVFNGPLQSTNRKSLSN---------------IDNIPENLKRVYLELIS 291
+D++ GIL+WE F+ L + +LSN + P+ + R+
Sbjct: 177 SDVWSFGILLWEAFS--LGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWE 234
Query: 292 ERPNQRPN 299
P QRP+
Sbjct: 235 YDPGQRPS 242
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 30.3 bits (68), Expect = 4.6
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 12/117 (10%)
Query: 717 TKVGVLDPTSSQTTERQGGSDGGDGWDLDDWRSLEDTPSPSMPPPLQPSQSWAMSNSLSA 776
TK + S E L + + ED P+ P P PS S A S S+ A
Sbjct: 344 TKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDA 403
Query: 777 MSLQENGLTSPSSDVNSTGGWEDTEWSPIEETEPSIKMEESRKRREEKKMARQKELE 833
++ PS S + E EP E++K R AR ++L+
Sbjct: 404 VAKPAEPDVVPSPGSASN----------VPEVEP--AQVEAKKTRPLSPYARYEDLK 448
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. This
family represents the C-terminus (approximately 500
residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have been
proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 30.2 bits (68), Expect = 5.7
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Query: 677 SLEHEGEGGSASKGESMSDYDETPWESET-----WGDMESSSNDTTKVGVLDPTSSQTTE 731
L G + ++ ++ + WG+ D + E
Sbjct: 7 GLLSLGGQSATARQPTVGGDKAAAADFAVMGGDDWGEDADLGLDEDGYLEGEDGLLDDEE 66
Query: 732 RQGGSDGGDGWDLDDWRSLE---DTPSPS----------MPPP-LQPSQSWAMSNSLSA 776
G D GWD++D L D P P P + SQ W ++SL+A
Sbjct: 67 GPEGGDEEGGWDVEDDLVLPPELDVPKDQAGNADSDVFVAPNPGMSVSQIWPNNSSLAA 125
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 30.1 bits (68), Expect = 6.3
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 747 WRSLEDTPSPSMPPPLQPSQSWAMSNSLSAMSLQEN-GLTSPSSDVNSTGGWEDTEWSPI 805
S SPS P Q + S S ++ +S VNS+G + SP
Sbjct: 149 SASPSRKFSPSSTIQQSP-QLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPW 207
Query: 806 EETEPSIK---MEESRKRREEKKMARQKELEAKRAAKQSGGPL 845
K + + +++ +A ++ P
Sbjct: 208 ALRSSGDKKDITTDEKYLETFLAEVDEEQHMITSSAGKNATPP 250
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.0 bits (68), Expect = 6.5
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 16/66 (24%)
Query: 779 LQENGLTSPSSDVNSTGGWEDTEWSPIEETE-PSIKMEESRKRREEKKMAR----QKELE 833
L+E+GL S ++ + +P EE E + EE++ RR E + R ++E +
Sbjct: 171 LEESGLAS-----------DEKKLTPFEELELKKLSPEEAKARRAELRKMRELLFREEAK 219
Query: 834 AKRAAK 839
AKR K
Sbjct: 220 AKRIKK 225
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 29.8 bits (67), Expect = 6.5
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 211 KISEASCIPMKRYSRYEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEVFNGPLQS---- 266
K SE IP++ + PE+ + +D++ G+++WE+F+ +Q
Sbjct: 187 KASENDAIPIR----------WMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGM 236
Query: 267 TNRKSL-----SNIDNIPENLKRVYLELI----SERPNQRPNPAD 302
+ + + N+ + P+N L+ S+ P+ RP+ A
Sbjct: 237 AHEEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFAS 281
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 29.1 bits (66), Expect = 6.7
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 413 SRLLLQLEHFIGHVPDAI-VNEQIFQQVALGFLDTNPTIREQTVKSIIHLA---PKLNYN 468
+ L+L D + V Q+F ++ +D +P IR L P L YN
Sbjct: 50 THLILN---------DMVKVKGQLFLEMLKCLVDEDPEIRALAKSFFSELLKKNPNLIYN 100
Query: 469 NLNVETLRHFA 479
E +
Sbjct: 101 LF-PEIISVLN 110
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 29.7 bits (67), Expect = 6.8
Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 48/269 (17%)
Query: 104 ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKK---- 159
L +K + ++H +I+ +D VY+ +++ + + + LK+ ++K
Sbjct: 67 TLRELKIMNEIKHENIMGLVD---------VYVEGDFINLVMDIMASDLKKVVDRKIRLT 117
Query: 160 QIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWKLG--GL--EYMEKISEA 215
+ + + QI L+ L H ++ +IFINS G K+ GL Y
Sbjct: 118 ESQVKCILLQILNGLNVLHK-WYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSD 176
Query: 216 SCIPMKRYSRYEDQST------YQIPENSL-SHVTKCSTDMYGLGILIWEVFNGPLQSTN 268
+ + R E+ ++ Y+ PE + + + DM+ +G + E+ G
Sbjct: 177 TLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTG------ 230
Query: 269 RKSLSNIDNIPENLKRVYLELISERPNQRPN----PADFIMRNRKP---GGYFKN----- 316
K L +N + L R++ L + + P P RKP F N
Sbjct: 231 -KPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDA 289
Query: 317 -DLIDALLFL---EEIQMKDKIDKNKFFN 341
DL+ +LL L E I K+ + F +
Sbjct: 290 IDLLQSLLKLNPLERISAKEALKHEYFKS 318
>gnl|CDD|198144 smart01076, CG-1, CG-1 domains are highly conserved domains of
about 130 amino-acid residues. The domains contain a
predicted bipartite NLS and are named after a partial
cDNA clone isolated from parsley encoding a
sequence-specific DNA-binding protein. CG-1 domains are
associated with CAMTA proteins (for CAlModulin -binding
Transcription Activator) that are transcription factors
containing a calmodulin -binding domain and ankyrins
(ANK) motifs.
Length = 118
Score = 28.1 bits (63), Expect = 7.1
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 275 IDNIPENLKRVYLELISERPNQRPNPADFIMRNRKPGGYFKND 317
I I N + + E ++ P RP + NRK YF+ D
Sbjct: 14 IAAILINFDK-HTEWLTTSPPTRPKSGSLFLFNRKKLKYFRKD 55
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 29.6 bits (66), Expect = 7.3
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 223 YSRYEDQSTYQI----PENSLSHVTKCSTDMYGLGILIWEVFNGPLQS------------ 266
Y R + +S I PE + +D++ G+++WE+F+ LQ
Sbjct: 179 YYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEM 238
Query: 267 -TNRKSLSNIDNIPENLKRVYLELISERPNQRPNPADFIMRNR 308
R+ L ++ P + + E E P++RP D R R
Sbjct: 239 VRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 29.3 bits (66), Expect = 8.3
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 764 PSQSWAMSNSLSAMSLQENGLTSPSSDVNSTGGWEDTEWSPIEETEPSIKMEESRKRREE 823
P S S + ++ S D ++ G+E + P K + R +E+
Sbjct: 229 PEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQR-NKEK 287
Query: 824 KKMARQKELEAKRAAKQ 840
++ ++E + ++ K+
Sbjct: 288 RRKELEREAKEEKQLKK 304
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.5 bits (66), Expect = 8.5
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQ 840
EE +P E+ R ++ EK+ R K E ++ A++
Sbjct: 89 AEELKPKQAAEQERLKQLEKE--RLKAQEQQKQAEE 122
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 29.5 bits (66), Expect = 8.7
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 321 ALLFLEEIQMKDKIDKNKFFNGLASAIDKFPKLISCHKVLPQLINAFEYGEAGA-SVLSP 379
++ EI D + NK F+ L F L VL E ++G +
Sbjct: 147 LDMYATEISHDDYVTVNKAFSTLEKNSLDFDAL-----VLEISEEIIENVKSGHIEAMDK 201
Query: 380 LFKIGQMLEHEDYQAK-IVPCVVKLFGSND-----------RATRSRLLLQLEHFIGHVP 427
+FKI + E D + I +L S D R +R +L+ F+
Sbjct: 202 IFKIVEKEEARDELTRKIRDAKSELPKSQDNPVLKEFYGMYRMYATRKTRKLKDFVIKSI 261
Query: 428 DAIVNE 433
+ V E
Sbjct: 262 EVSVKE 267
>gnl|CDD|201774 pfam01401, Peptidase_M2, Angiotensin-converting enzyme. Members of
this family are dipeptidyl carboxydipeptidases (cleave
carboxyl dipeptides) and most notably convert
angiotensin I to angiotensin II. Many members of this
family contain a tandem duplication of the 600 amino
acid peptidase domain, both of these are catalytically
active. Most members are secreted membrane bound
ectoenzymes.
Length = 595
Score = 29.5 bits (66), Expect = 8.7
Identities = 38/161 (23%), Positives = 54/161 (33%), Gaps = 34/161 (21%)
Query: 608 SNAAATWADWAVTAVTSKFYRSQSETLKTSRGPTRPSGRFLSKPASLEASSA--SSMSTT 665
N + A S + Q+ TLK + GR A LE + M T
Sbjct: 61 QNHTLKYGTKAKEFDVSNW---QNFTLKRIIKKVQTLGRANLPLAELEEYNQILLDMETI 117
Query: 666 TTASSVASLASS---LEHEGEGGSASKGESMSDYDETPWESETWGDMESSSNDTTKVGV- 721
+ + V + LE + A+ Y E W E W D KVG
Sbjct: 118 YSTAKVCFPNGTCWSLEPDLTNIMATS----RKYAELLWAWEGWRD---------KVGRA 164
Query: 722 LDPTSSQTTE------RQGG-SDGGDGWDLDDWRSLEDTPS 755
+ P + E R G +D GD W RS ++P+
Sbjct: 165 ILPLYPKYVELSNEAARLNGYTDAGDSW-----RSWYESPT 200
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 29.0 bits (66), Expect = 8.8
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 810 PSIKMEESRKRREEKKMARQKELEAKRAAKQS 841
PS K +RRE ++ +K LE R +S
Sbjct: 83 PS-KKGTEEERRERREENLEKALELLREGNRS 113
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 29.7 bits (67), Expect = 8.9
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 14/151 (9%)
Query: 636 TSRGPTRPSGRFLSKPASLEASSASSMSTTTTASSVASLASSLEHEGEGGSASKGESMS- 694
R P P R P + + ASS + T++S + + S S
Sbjct: 641 ADRKPKTPPSR---APPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSA 697
Query: 695 --------DYDETPWESETWGDMESSSNDTTKVGVLDP--TSSQTTERQGGSDGGDGWDL 744
YD PWE + + G L + +E Q
Sbjct: 698 PAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQ 757
Query: 745 DDWRSLEDTPSPSMPPPLQPSQSWAMSNSLS 775
+ + ++ Q ++ L
Sbjct: 758 VQAEAQSPASTTALTQTSSEVQDTELNLVLL 788
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 29.6 bits (66), Expect = 9.0
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 754 PSPSMPPPLQPSQSWAMSNSLSAMSLQENGLTSPSSDVNSTGGWEDTEWSPIEETE--PS 811
P P P P QP+ + M S++ M + + IE +
Sbjct: 430 PEPVGPVPPQPTNPYVMPISMANMVYPG--HPQEHGHERKRKRGGELKEELIETLKLVKK 487
Query: 812 IKMEESRKRREEKKMARQKELEAKRAAKQSGGPLKLGA 849
+K E+ +E + A + E++ ++ K A
Sbjct: 488 LKEEQESLAKELEATAHKSEIKKIAESEFKNAGAKTAA 525
>gnl|CDD|216669 pfam01732, DUF31, Putative peptidase (DUF31). This domain has no
known function. It is found in various hypothetical
proteins and putative lipoproteins from mycoplasmas. It
appears to be related to the superfamily of trypsin
peptidases and so may have a peptidase function.
Length = 307
Score = 29.3 bits (66), Expect = 9.2
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 76 WKFHGGKKKGSNEKVTIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVY 135
F GK N T +++D+ + L + K T + V+
Sbjct: 87 KSFSLGKYDDDNPFDTTDNTNNSDSNKTKLDSINKSNTSAFSAP------------KTVF 134
Query: 136 LAVEYVEPI---FYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRHNHVNHT 191
A ++++ + + KE + K+ Y + + +I L +D +L N N
Sbjct: 135 TATDFLKRQSSPSDYSKPSQKEKYKNKEEYADFAVIEIDFNLLKNNDDEELAKNITNDA 193
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 29.0 bits (65), Expect = 9.5
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 235 PENSLSHVTKCSTDMYGLGILIWEVFNGPLQ-----STN--------RKSLSNIDNIPEN 281
PE L +D++ G+++WE+F+ LQ S R+ L ++ P
Sbjct: 195 PEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPAR 254
Query: 282 LKRVYLELISERPNQRP 298
+ + +E +E P +RP
Sbjct: 255 VYALMIECWNEIPARRP 271
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 28.7 bits (64), Expect = 9.8
Identities = 11/55 (20%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 780 QENGLTSPSSDVNSTGGWEDTEWSPIEETEPSI-KMEESRKRREEKKMARQKELE 833
+E + + SS+ G ED + + + ++ ++EE +++ ++K++ Q+ L+
Sbjct: 12 EEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLD 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,231,387
Number of extensions: 4075426
Number of successful extensions: 3523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3488
Number of HSP's successfully gapped: 119
Length of query: 852
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 747
Effective length of database: 6,280,432
Effective search space: 4691482704
Effective search space used: 4691482704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.1 bits)