RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3914
(852 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 113 bits (283), Expect = 4e-26
Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 7/242 (2%)
Query: 342 GLASAIDKFPKLI----SCHKVLPQLINAF--EYGEAGASVLSPLFKIGQMLEHEDYQAK 395
LAS I ++ + +LP + E E +++S L + +++
Sbjct: 343 ALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402
Query: 396 IVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIREQTV 455
++P +V+L R ++ + G + +E++ +D IRE
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 462
Query: 456 KSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKVLI 515
++ L K + + + + D R T C+ ++ I K ++
Sbjct: 463 SNLKKLVEKFGKEWAHATIIPKVLAM-SGDPNYLHRMTTLFCINVLSEVCGQDITTKHML 521
Query: 516 SAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDSAFKT 575
R DP R +L S + + P L +L+ D + V+ A +
Sbjct: 522 PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 581
Query: 576 IK 577
+
Sbjct: 582 LT 583
Score = 88.9 bits (220), Expect = 2e-18
Identities = 39/294 (13%), Positives = 98/294 (33%), Gaps = 15/294 (5%)
Query: 314 FKNDLIDALLFLEEIQMKDKIDKNKFFNGLASAIDKFPKLISCHKVLPQLINAFEYG--- 370
K DL+ A L ++ + + + + + + ++ Q++ +
Sbjct: 278 TKTDLVPAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335
Query: 371 ------EAGASVLSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIG 424
A ASV+ L I L ++ ++P + R ++ L+
Sbjct: 336 ANQHVKSALASVIMGLSPI---LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392
Query: 425 HVPDAIVNEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAK 484
+ +++ + + D +R ++ + LA +L + +
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW-LV 451
Query: 485 DDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYF 544
D IR T + K+ + +I DP R + + +
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC 511
Query: 545 LLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESMEA 598
+ +LP + +++ DP +VR + K+++ L+ + ++ +E
Sbjct: 512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565
Score = 83.9 bits (207), Expect = 8e-17
Identities = 56/276 (20%), Positives = 95/276 (34%), Gaps = 15/276 (5%)
Query: 314 FKNDLIDALLFLEEIQMKDKIDKNKFFNGLASAIDKFPKLIS----CHKVLPQLINAFEY 369
+++L+ L D+++ LA + F L+ H +LP L +
Sbjct: 46 TRSELLPFLTDTIY-------DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATV 98
Query: 370 GEAG--ASVLSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVP 427
E + L I D +A VP V +L G + +R+ V
Sbjct: 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158
Query: 428 DAIVNEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQ 487
A+ ++ Q D P +R + A L +N+ E + F+ L A D+Q
Sbjct: 159 SAVK-AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL-ASDEQ 216
Query: 488 GGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLS 547
+R IA L + + +++ +A D R Q+
Sbjct: 217 DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276
Query: 548 EVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKL 583
++PA L D E VR +A +K F L
Sbjct: 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312
Score = 60.4 bits (146), Expect = 2e-09
Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 30/214 (14%)
Query: 377 LSPLFKIGQMLEHEDYQ-----AKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIV 431
L P+ + L +ED Q K + + G TRS LL L
Sbjct: 9 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDT--------- 57
Query: 432 NEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIR 491
+ + + + + L L A ++ +R
Sbjct: 58 ------------IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESL-ATVEETVVR 104
Query: 492 TNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQ 551
+ I+H P + + R + +R + L + + S V
Sbjct: 105 DKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTS-ACGLFSVCYPRVSSAVKA 163
Query: 552 RILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQ 585
+ L +D VR +A + F LE
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 8e-15
Identities = 92/566 (16%), Positives = 169/566 (29%), Gaps = 180/566 (31%)
Query: 2 SRLYRLPKQFT---VN--------KNKVKNIDDDK-------------ALTSEVV-DIRL 36
RLY + F V+ + + + K + +V ++
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 37 SSSPKM-----WAFFGRDASKDFAYEVGEPAVSFSGCFTQKHTFWKFHGGKKKGSNEKVT 91
KM W S + V E + SN K+
Sbjct: 177 QC--KMDFKIFWLNLKNCNSPE---TVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLR 226
Query: 92 IFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESP---------SKSLV-------- 134
I + + L + LK+ + + L L +V++ K L+
Sbjct: 227 I------HSIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 135 -YL-AVEYVEPIFYHLDNTLKENNEKKQIYISWGIFQITRALSFLINDADLRHNHVNHTS 192
+L A H TL +E K + + + DL +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP-DEVKSLLLKY----------LDCRPQDLPREVLTTNP 327
Query: 193 IFINSCGE-----------WKLGGLEYMEKISEASCI----PMKRYSRYEDQSTYQ---- 233
++ E WK + + I E S + P + ++ S +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 234 IPENSLSHVTKCSTDMYGLGILIWE--VFNGPLQSTN---RKSLSNIDNIPENLKRV--- 285
IP LS LIW + + + N + SL E+ +
Sbjct: 387 IPTILLS--------------LIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSI 431
Query: 286 YLELISERPNQRPNPADFIMRNRKPGGYFKNDLIDALLFLEEIQMKDKIDKNKFFNGLAS 345
YLEL + N+ + P + +DLI +D F++ +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-----------PPYLD-QYFYSHIGH 479
Query: 346 AIDKFPKLISCHKVLPQLINAFEYGEAGASVLSPLFKIGQMLEHEDY---QAKIVPCVVK 402
H L N E+ E ++ +F L D+ + KI +
Sbjct: 480 -----------H-----LKNI-EHPER-MTLFRMVF-----L---DFRFLEQKI-----R 508
Query: 403 LFGSNDRATRSRL--LLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIREQTVKS--- 457
+ A+ S L L QL+ + ++ D N+ ++++ LD P I E + S
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICD---NDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 458 -IIHLAPKLNYNNLNV--ETLRHFAR 480
++ +A L + + E + R
Sbjct: 566 DLLRIA--LMAEDEAIFEEAHKQVQR 589
Score = 64.9 bits (157), Expect = 9e-11
Identities = 85/640 (13%), Positives = 168/640 (26%), Gaps = 178/640 (27%)
Query: 99 DTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFY--HLDNTLKENN 156
+T E Y L + + D + + + I +D+ + +
Sbjct: 10 ETGEHQYQYKDILSVFE-DAFVDNFDCKDVQ---------DMPKSILSKEEIDHIIMSKD 59
Query: 157 EKKQIYISWGIF--QITRALSFLINDADLRHNHVNHTSIFINSCGEWKLGGLEYMEKISE 214
+ + + + + LR N+ ++ M I
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINY------------KF------LMSPIKT 100
Query: 215 ASCIPMKRYSRYEDQ-----------STYQIP-ENSLSHVTKCSTD-----------MYG 251
P Y +Q + Y + + + + + G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 252 LG--ILIWEV---------FNGP---LQSTNRKSLSNIDNIPENLKRVYLEL---ISERP 294
G + +V + L N S + + E L+++ ++ + R
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRS 217
Query: 295 NQRPNPADFI--MRNRKPGGYFKNDLIDALLFLEEIQMKDKIDKNKFFNG----L----- 343
+ N I ++ + LL L +Q + FN L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRF 274
Query: 344 ASAIDKFPKLISCHKVLPQLINAFEYGEAGASVLSPLFKIG-QMLEHEDYQAKIVPCVVK 402
D + H L E S+L Q L E P +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREV--LTTNPRRLS 331
Query: 403 LFGSNDRATRSRL-------LLQLEHFIGHVPDAIVN-------EQIFQQVALGF-LDTN 447
+ + R + +L I ++ +N ++F ++++ F +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSV-FPPSAH 386
Query: 448 -PT---------IREQTVKSI--------------------IH------LAPKLNYNNLN 471
PT + + V + I N L+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 472 VETLRHFARLQAKDDQGGIRTNTTVCVGK-----IAHHLHPQIRQKVLISAFSRAMRD-P 525
+ H+ + D + + + I HHL I ++ F D
Sbjct: 447 RSIVDHY-NIPKTFDSDDL---IPPYLDQYFYSHIGHHLK-NIEHPERMTLFRMVFLDFR 501
Query: 526 FPPA--RNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKL 583
F R+ A+ L ++ + P +C E+ V I FL K+
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNA-----ILDFLPKI 555
Query: 584 EQVSENPSLRESMEAD-VHTATPSLSNAAATWADWAVTAV 622
E+ +L S D + A L + A V
Sbjct: 556 EE-----NLICSKYTDLLRIA---LMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.0 bits (163), Expect = 2e-11
Identities = 98/593 (16%), Positives = 171/593 (28%), Gaps = 188/593 (31%)
Query: 238 SLSHVTKCSTDMYGLGILIWEVFNGPL-QSTNRKSLSNIDNIPENLKRVYLELISERPNQ 296
SL HV T + + + E FN L + T + + P L +L +S
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 297 RPNPA----------DF---IMRNRKPGGYFKNDLIDALLFLEEIQMKDKIDKNK----- 338
+F + ND I AL + + K K
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEG--------ND-IHALAAKLLQENDTTLVKTKELIKN 125
Query: 339 FFNGLASAIDKFPKLISCHKVLPQLINAFEYGEAGASVLSPLFKI--GQ---------ML 387
+ A F K + L A G A L I GQ +
Sbjct: 126 YITARIMAKRPFDKKSN-----SALFRAVGEGNAQ------LVAIFGGQGNTDDYFEELR 174
Query: 388 E-HEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQV--ALGFL 444
+ ++ Y V L + L I DA E++F Q L +L
Sbjct: 175 DLYQTYH----VLVGDLI---KFSAE-----TLSELIRTTLDA---EKVFTQGLNILEWL 219
Query: 445 DTNPTIR--EQTVKSI------IHLAPKLNY----NNLNVETLRHFARLQAKDDQGGIRT 492
+ NP+ + + SI I + +Y L + L+
Sbjct: 220 E-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG--------- 269
Query: 493 NTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLAL-------AATQQYFL 545
T + L++A + A D + + A+ + +
Sbjct: 270 -ATGHS-------------QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 546 LSEVAQRILPALCQLSTDPEK-------SVRDSAFKTIKGFLGKLEQVSENPSLRESMEA 598
+ + P++ + S + + S+ + + ++ ++ K N L
Sbjct: 316 NTSLP----PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-----NSHLPA--GK 364
Query: 599 DVHTATPSLSNAAATWADWAVTAVT---------SKFYRS--------QSETLKTSRGPT 641
V SL N A V V+ + R QS + R
Sbjct: 365 QVEI---SLVNG----AKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL- 414
Query: 642 RPSGRFL--SKP--ASLEASSASSMSTTTTASSVASLASSLE------HEGE---GGSAS 688
+ S RFL + P + L ++ ++ ++V+ A ++ +G S S
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 689 KGESMSDY-DETP--WESETWGDMESSSNDTTKVGVLDPTSSQTTERQGGSDG 738
E + D P WE+ T T + P GG+ G
Sbjct: 475 ISERIVDCIIRLPVKWETTT-------QFKATHILDFGP---------GGASG 511
Score = 64.3 bits (156), Expect = 1e-10
Identities = 81/455 (17%), Positives = 119/455 (26%), Gaps = 199/455 (43%)
Query: 410 ATRSRLLLQ---LEHFIGHVPDA--IVNEQIFQQVALGFLDTNPTIREQTV-----KSII 459
+TR L L LEH + VP A + Q+ +Q F P E +
Sbjct: 5 STRP-LTLSHGSLEHVL-LVPTASFFIASQLQEQ----FNKILPEPTEGFAADDEPTTPA 58
Query: 460 HLAPK-LNYNNLNVE-------------TLRHFAR--LQAKDDQGGIRTNTTVCVGKIAH 503
L K L Y + VE L F L+ D I +A
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND----IHA--------LAA 106
Query: 504 HLH-----PQIRQKVLISAFSRA---MRDPFPP--------ARNAGVLALAA-------T 540
L ++ K LI + A + PF A G L A T
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 541 QQYF------------LLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSE 588
YF L+ ++ + L +L + + F +G + + E
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA--EKVFT--QGL--NILEWLE 220
Query: 589 NPSLRESMEADVHTATPS---LSNAAATW--------ADWAVTAVTSKFYRSQSETLKTS 637
NPS TP L + + A + VTA F
Sbjct: 221 NPS-----------NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF----------- 258
Query: 638 RGPTRPSGRFLSKPASLEASSASSMSTTTTASSVASLASSLEHEGEGGSASKGESMSDYD 697
P L + + T + V ++A +
Sbjct: 259 ------------TPGELRSYLKGA--TGHSQGLVTAVAIA-------------------- 284
Query: 698 ETPWESETWGDMESSSNDTTKV----GVLDPTSSQTTERQGGSDGGDGWDLDDWRSLEDT 753
E+++W S V G R E
Sbjct: 285 ----ETDSWESFFVSVRKAITVLFFIG--------------------------VRCYEAY 314
Query: 754 PSPSMPPPLQPSQSWAMSNSLSAMSLQENGLTSPS 788
P+ S+PP S+ SL EN PS
Sbjct: 315 PNTSLPP------------SILEDSL-ENNEGVPS 336
Score = 58.5 bits (141), Expect = 8e-09
Identities = 81/582 (13%), Positives = 174/582 (29%), Gaps = 215/582 (36%)
Query: 113 TLRHPSI----------------L--TFLDSVESPS---------KSLVYLAVEYVEPIF 145
TL H S+ L F + P+ + L +++
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG--- 66
Query: 146 YHLDNTLKENNEKKQIYISWGIFQITRALSFLINDAD---LRHNHVNHTSIFINSCGEWK 202
++ + ++ + Q + L+ + + + L N + H
Sbjct: 67 -YVSSLVEPSKVG----------QFDQVLNLCLTEFENCYLEGNDI-HA--LAAK----- 107
Query: 203 LGGLEYMEKISEASCIPMKRY--SRYEDQSTYQIPENS--LSHVTKCSTDMY----GLGI 254
L + I K Y +R + + NS V + + + G G
Sbjct: 108 LLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 255 -------L--IWEVFN---GPLQSTNRKSLSNIDNIPENLKRVY---LELIS--ERPNQR 297
L +++ ++ G L + ++LS + + ++V+ L ++ E P+
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 298 PNPADFIMRNRKPGGYFKNDLIDA-----LLFLEEIQM--------KDKIDKNKFFNGLA 344
P D+ L+ L+ + IQ+ + + L
Sbjct: 226 P-DKDY--------------LLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 345 SAIDKFPKLISCHKVLPQLINAFE-YGEAGASVLSPLFKIGQMLE-HEDY-QAKIVPCVV 401
A L++ V +++E + + ++ LF IG + +E Y + P ++
Sbjct: 269 GATGHSQGLVTA--VAIAETDSWESFFVSVRKAITVLFFIG--VRCYEAYPNTSLPPSIL 324
Query: 402 KLFGSNDRATRSRLLL-------QLEHFI----GHVPDAIVNEQIFQQVALGFLDTNPTI 450
+ N+ S +L Q++ ++ H+P +Q+ +++L N
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---GKQV--EISL----VN--- 372
Query: 451 REQTVKSIIHLAPKLNYNNLNV----ETLRHFA-RLQ-----AKDDQGGI----RTNTTV 496
K NL V ++L L+ + DQ I R
Sbjct: 373 -----------GAK----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER----- 412
Query: 497 CVGKIAHHLHPQIRQKVL-ISAFSRAMRDPF-----PPARNAGVLALAATQQYF----L- 545
+ + L +++ PF PA + L F +
Sbjct: 413 ---------KLKFSNRFLPVAS-------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 546 -----------LSEVAQRILPALC-QLSTDP---EKSVRDSA 572
L ++ I + + P E + + A
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 53.9 bits (129), Expect = 2e-07
Identities = 60/395 (15%), Positives = 108/395 (27%), Gaps = 122/395 (30%)
Query: 506 HPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPA-LCQLSTDP 564
H + +L+ P A A+Q L E +ILP + D
Sbjct: 13 HGSLEHVLLV-----------PTA-----SFFIASQ----LQEQFNKILPEPTEGFAADD 52
Query: 565 E-KSVRDSAFKTIKGFLGKLEQVSENPSLRESMEA-------------DVHTATPSLSNA 610
E + + K + G++ L + S+ + + D+H L
Sbjct: 53 EPTTPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 611 AATWADWAVTAVTSKFYRSQSETLKTSRGPTRPSGRFLSKPASLEASSASSMSTTTTASS 670
T + + ++ RP + S A A +
Sbjct: 112 NDT-TLVKTKELIKNYITARIMA-------KRPFDK-KSNSALFRAVGEGN--------- 153
Query: 671 VASLASSLEHEGEGGSASKGESMSDYDETPWE--SETWGDMESSSNDTTKV--GVLDPTS 726
A L + GG +G + + +E + + D K L
Sbjct: 154 -AQLVAIF-----GG---QGNT-----DDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 727 SQTTERQGGSDGGDGWDLDDW-RSLEDTPSP--------SMPP--PLQPSQSWAMSNSL- 774
T + + G ++ +W + +TP S P +Q + + L
Sbjct: 200 RTTLDAE--KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 775 ---SAMSLQENGLTSPSSDV------NSTGGWED-------------------TEWSPIE 806
+ G T S + T WE E P
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 807 ETEPSIKMEESRKRREEKK--M-----ARQKELEA 834
PSI +E+S + E M Q++++
Sbjct: 318 SLPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQD 351
Score = 51.2 bits (122), Expect = 1e-06
Identities = 86/546 (15%), Positives = 160/546 (29%), Gaps = 164/546 (30%)
Query: 1 FSRLYRLPKQFTVNKNKVKNIDDDKALTSEVVDIRLSSSPKMWA-FFG-----RDASKDF 54
F +L +QF K + + D ++ ++ F G + SK
Sbjct: 27 FFIASQLQEQFN------KILPE--PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 55 AY-EVGEPAV-SFSGCFTQK---HTF-WKFHGGKKKGSNEKVTIFLNDSADTYEPALSYV 108
+ +V + F C+ + H K + + N Y A
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-----YITARIMA 133
Query: 109 KKLKTLRHPSILTFLDSVESPSKSL-----------VYLAVE-------Y---VEPIFY- 146
K+ + S L +V + L Y E Y V +
Sbjct: 134 KRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVGDLIKF 190
Query: 147 ---HLDNTLKENNEKKQIY--------------------------ISWGIFQITRALSFL 177
L ++ + ++++ IS + + + ++
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 178 I-------NDADLRHN------HVNH--TSIFINSCGEWKLGGLEYMEKISEASCIPMKR 222
+ +LR H T++ I W+ + + +A I +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFVSVRKA--ITVLF 304
Query: 223 YSRYEDQSTYQIPENSLS-HVTKCSTD--------MYGLGI--LIWEVFNGPLQSTNRKS 271
+ Y P SL + + S + M L I L E + TN
Sbjct: 305 FIGVRCYEAY--PNTSLPPSILEDSLENNEGVPSPM--LSISNLTQEQVQDYVNKTNS-- 358
Query: 272 LSNIDNIPENLKRVYLELISERPNQRPN-PADFIMRNRKPGGYFKNDLIDALLFLEEIQM 330
++P K+V + L+ N + ++ G + L L L + +
Sbjct: 359 -----HLPAG-KQVEISLV--------NGAKNLVV-----SGPPQ-SLYGLNLTLRKAKA 398
Query: 331 KDKIDKNKFFNGLASAIDKFP--KLISCHKVLPQLINA-F--EY-GEAGASVLSPLFKIG 384
+D+++ F KL ++ LP + + F A + L K
Sbjct: 399 PSGLDQSRI---------PFSERKLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNN 447
Query: 385 QMLEHEDYQAKIVPCVVKLF-GSNDRATRSRLLLQLEHFIGHVPDAIVN-EQIFQQVALG 442
+D Q +P V F GS+ R + ++ I +P V E Q A
Sbjct: 448 VSFNAKDIQ---IP-VYDTFDGSDLRVLSGSISERIVDCIIRLP---VKWETTTQFKATH 500
Query: 443 FLDTNP 448
LD P
Sbjct: 501 ILDFGP 506
Score = 38.1 bits (88), Expect = 0.017
Identities = 65/364 (17%), Positives = 116/364 (31%), Gaps = 123/364 (33%)
Query: 18 VKNIDDDKALTSEVVDIRLSSSPKMWAFFGRDASKDFAYEVGEPAVSFSG-CFTQ-KH-- 73
++ D + + ++ ++I W + D Y + P +S Q H
Sbjct: 199 IRTTLDAEKVFTQGLNI------LEW-LENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYV 250
Query: 74 TFWKFHG---GKKKGSNEKVTIFLND--------SADT----YEPALSYVKKL------- 111
K G G+ + + T D+ + + L
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 112 -----KTLRHPSILTFLDSVE----SPSKSLVY-LAVEYV--EPIFYHLDNTLKENNEKK 159
T PSIL DS+E PS L++ + E + +++ T K
Sbjct: 311 YEAYPNTSLPPSILE--DSLENNEGVPS----PMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 160 QIYISWGIFQITRALSFLINDADLRHNHVNHTSIFINSCGEWK-LGGLE-YMEKIS---- 213
Q+ IS L+N A N V + G + L GL + K
Sbjct: 365 QVEIS------------LVNGAK---NLV----V----SGPPQSLYGLNLTLRKAKAPSG 401
Query: 214 -EASCIPM-KR----YSRYEDQSTYQIPENS--LSHVT-KCSTDMYG---------LGIL 255
+ S IP +R +R+ ++ P +S L + + D+ + I
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 256 IWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLELISER---PNQRPNPA----DFIMRNR 308
+++ F+G ++ + LS +I E + +I A DF
Sbjct: 459 VYDTFDG----SDLRVLS--GSISERIVDC---IIRLPVKWETTTQFKATHILDF----- 504
Query: 309 KPGG 312
PGG
Sbjct: 505 GPGG 508
Score = 34.6 bits (79), Expect = 0.19
Identities = 42/239 (17%), Positives = 70/239 (29%), Gaps = 100/239 (41%)
Query: 685 GSASKGESMSDYDETPWESETWGDMESSSNDTTKVGVLD-----PTSSQTTERQGGSDG- 738
GS +G M Y + + W ++ DT +LD P + T GG G
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN--LTIHFGGEKGK 1682
Query: 739 --------------GDGW--------DLDDWRSLEDTPSPSMPPP---L------QPSQS 767
DG +++ E + S + L QP
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEIN-----EHSTSYTFRSEKGLLSATQFTQP--- 1734
Query: 768 WAM-SNSLSAMS-LQENGLTSPSSDVN---STGGWEDTEWS---------PIEETEPSIK 813
A+ +A L+ GL P+ S G E++ IE ++
Sbjct: 1735 -ALTLMEKAAFEDLKSKGLI-PADATFAGHSLG-----EYAALASLADVMSIESL---VE 1784
Query: 814 MEESRKR---------REEK-------------KMARQKELEA-----KRAAKQSGGPL 845
+ R R+E ++A EA +R K++G +
Sbjct: 1785 V--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 52.3 bits (125), Expect = 1e-07
Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 20/203 (9%)
Query: 386 MLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNE--QIFQQVALGF 443
+L+ D +K+ R L LE + P E + +
Sbjct: 6 LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65
Query: 444 L-DTNPTIREQTVKSIIHLAPKLN-----YNNLNVETLRHFARLQAKDDQGGIRTNTTVC 497
D+N + K + LA L Y + V +L + K+ + + T
Sbjct: 66 TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLE----KFKEKKPNVVTALREA 121
Query: 498 VGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVL----ALAATQQYFLLSEVAQRI 553
+ I + + ++ + P ++ L AL TQ L ++ + +
Sbjct: 122 IDAIYASTSLE----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLL 177
Query: 554 LPALCQLSTDPEKSVRDSAFKTI 576
+L + +P+ +VRDS+ + +
Sbjct: 178 TTSLVKTLNEPDPTVRDSSAEAL 200
Score = 43.1 bits (101), Expect = 2e-04
Identities = 30/242 (12%), Positives = 73/242 (30%), Gaps = 63/242 (26%)
Query: 320 DALLFLEEIQMKDKIDKNKFFNGLAS--------AIDKFPKLISCH---------KVLPQ 362
+ L+ + + K+ K+ F++ L +++ KL++ H ++
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 363 LINAFEYGEAGASVLSPLFKIGQMLEH-----EDYQAKIVPCVVKLFGSNDRATRSRLLL 417
L V + + + +Y + VP +++ F + L
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 418 QLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRH 477
++ E + + + NP+++ +T I + LN + L
Sbjct: 121 AIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-- 174
Query: 478 FARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLAL 537
K+L ++ + + +P P R++ AL
Sbjct: 175 ----------------------------------KLLTTSLVKTLNEPDPTVRDSSAEAL 200
Query: 538 AA 539
Sbjct: 201 GT 202
Score = 36.9 bits (85), Expect = 0.019
Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 7/146 (4%)
Query: 453 QTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQ- 511
+ ++ ++ PKL + ++ KD + C+ +A L +
Sbjct: 37 EVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95
Query: 512 -KVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRD 570
+ + ++ P A A+ A L ++ + ++ SV+
Sbjct: 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA----QQESIVESLSNKNPSVKS 151
Query: 571 SAFKTIKGFLGKLEQVSENPSLRESM 596
I L + + + N L + +
Sbjct: 152 ETALFIARALTRTQPTALNKKLLKLL 177
Score = 28.4 bits (63), Expect = 7.9
Identities = 18/138 (13%), Positives = 50/138 (36%), Gaps = 8/138 (5%)
Query: 340 FNGLASAIDKFPKLISCH--KVLPQLINAFEYGEAGASVLSPLFKIGQMLEHEDYQAKIV 397
LA K S + +P L+ F E +V++ L + +
Sbjct: 78 GKCLALLAKGLAKRFSNYASACVPSLLEKF--KEKKPNVVTALREAIDAIYASTSLEAQQ 135
Query: 398 PCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQ----VALGFLDTNPTIREQ 453
+V+ + + + +S L + + +N+++ + + + +PT+R+
Sbjct: 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195
Query: 454 TVKSIIHLAPKLNYNNLN 471
+ +++ L + +
Sbjct: 196 SAEALGTLIKLMGDKAVT 213
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 51.2 bits (123), Expect = 6e-07
Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 54/268 (20%)
Query: 82 KKKGSNEKV---TIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDS----------VES 128
K K + I L + E + VK L L HP I+ + ++ S
Sbjct: 25 KNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84
Query: 129 PSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQI--YISWGIF-QITRALSFLINDADLRH 185
K +Y+ ++ +L + + ++ + IF QI A+ FL H
Sbjct: 85 SPKVYLYIQMQLCRKE--NLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFL-------H 135
Query: 186 -NHVNH----TS-IFINSCGEWKLG--GL-EYMEKISEASCIPMKRYSRYEDQST----- 231
+ H S IF K+G GL M++ E + +
Sbjct: 136 SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKL 195
Query: 232 YQIPE--NSLSHVTKCSTDMYGLGILIWEVFNGPLQSTNRKSLSNI----------DNIP 279
Y PE + S+ K D++ LG++++E+ R
Sbjct: 196 YMSPEQIHGNSYSHKV--DIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKY 253
Query: 280 ENLKRVYLELISERPNQRPNPADFIMRN 307
+ +++S P +RP + I+ N
Sbjct: 254 PCEYVMVQDMLSPSPMERPEAIN-IIEN 280
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 50.9 bits (120), Expect = 2e-06
Identities = 30/248 (12%), Positives = 78/248 (31%), Gaps = 21/248 (8%)
Query: 355 SCHKVLPQLINA-----FEYGEAGASVLSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDR 409
S KV+ ++ E L PL + E IV + S+
Sbjct: 45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK----EYQVETIVDTLCTNMLSDKE 100
Query: 410 ATRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFL---------DTNPTIREQTVKSIIH 460
R + L+ IG +P A + V + +++ + + +
Sbjct: 101 QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160
Query: 461 LAPKL-NYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFS 519
+ + ++ Q + +R T + +G + + ++ S
Sbjct: 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 220
Query: 520 RAMRDPFPPARNAGVLALAATQQYF--LLSEVAQRILPALCQLSTDPEKSVRDSAFKTIK 577
++ + +AA + + E ++I+P + + + +R+ + +
Sbjct: 221 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 280
Query: 578 GFLGKLEQ 585
F+ + +
Sbjct: 281 SFVRRCPK 288
Score = 42.8 bits (99), Expect = 5e-04
Identities = 54/383 (14%), Positives = 106/383 (27%), Gaps = 59/383 (15%)
Query: 356 CHKVLPQLINAFEYGEAGASVLSPLFKIGQMLEH-----EDYQAKIVPCVVKLFGSNDRA 410
C K+ +L +A E + L L + ML ++ I+ C++ S A
Sbjct: 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 190
Query: 411 TRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIRE---QTVKSIIHLAPKLNY 467
R R ++ L H + + + + I ++ + + + Q + +I A
Sbjct: 191 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 250
Query: 468 NNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKV-------------- 513
L E + D +R ++ V
Sbjct: 251 EYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 308
Query: 514 -------------------------LISAFSRAMRDPFPPARNAGVLALAA--TQQYFLL 546
D R A L A + ++ +L
Sbjct: 309 PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368
Query: 547 SEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESME------ADV 600
E + + PAL + E++V+ F L + V ++ME +
Sbjct: 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML 428
Query: 601 HTATPSLSNAAATWADWAVTAVTSKFYRSQSETLKTSRGPTRPSGRFLSKP--ASLEASS 658
+ P++ A + +E + G L SL S
Sbjct: 429 QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS 488
Query: 659 ASSMSTTTTASSVASLASSLEHE 681
+SS S + + + +
Sbjct: 489 SSSNLKIDALSCLYVILCNHSPQ 511
Score = 37.0 bits (84), Expect = 0.036
Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 25/197 (12%)
Query: 393 QAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIRE 452
Q ++ +++ F S +S L ++ N + L + + P +
Sbjct: 854 QLELKSVILEAFSSPSEEVKSAASYALGSI------SVGNLPEYLPFVLQEITSQPKRQY 907
Query: 453 QTVKSIIHLAPKLNYNNLNVETLRHFARLQ--AKDDQGGIRTNTTVCVGKIAHHLHPQIR 510
+ S+ + + L +A L + + G R C+GK+ +
Sbjct: 908 LLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLL 967
Query: 511 QKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRI-------LPALCQLSTD 563
++ + AR++ V A+ F +S+ Q I + + D
Sbjct: 968 PRLK-----GYLISGSSYARSSVVTAVK-----FTISDHPQPIDPLLKNCIGDFLKTLED 1017
Query: 564 PEKSVRDSAFKTIKGFL 580
P+ +VR A T
Sbjct: 1018 PDLNVRRVALVTFNSAA 1034
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 48.9 bits (116), Expect = 3e-06
Identities = 28/222 (12%), Positives = 74/222 (33%), Gaps = 14/222 (6%)
Query: 377 LSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIF 436
L+ + ++L Y ++ +++L + + + D +
Sbjct: 14 LANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-LK 72
Query: 437 QQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIRTNTTV 496
+ +L + ++ K+ +A + V+++ + + N +
Sbjct: 73 KLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPELVKSMIPVLFANYRIGDEKTKINVSY 129
Query: 497 CVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPA 556
+ +IA +P + + + F + + + + A + + LP
Sbjct: 130 ALEEIAKA-NPMLMASI-VRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPFLPR 185
Query: 557 LCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESMEA 598
+ L D ++ VR SA + L L + N LR+ +
Sbjct: 186 IINLLHDGDEIVRASAVEA----LVHL--ATLNDKLRKVVIK 221
Score = 31.2 bits (70), Expect = 1.2
Identities = 21/161 (13%), Positives = 49/161 (30%), Gaps = 6/161 (3%)
Query: 521 AMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFL 580
+M + R A ++ ++++ + +L L +L D +V +A I
Sbjct: 2 SMEEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 581 GKLEQVSENPSLRESMEADVHTATPSLSNAAATWADWAVTAVTSKFYRSQSETLKTSRGP 640
E + E + + + + + + A + + +S L +
Sbjct: 61 KTREDLYE--PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRI 118
Query: 641 TRPSGRFLSKPASLEASSASSMSTTTTASSVASLASSLEHE 681
+ S + + AS V S L +
Sbjct: 119 GDEKTK---INVSYALEEIAKANPMLMASIVRDFMSMLSSK 156
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 49.0 bits (116), Expect = 3e-06
Identities = 22/196 (11%), Positives = 61/196 (31%), Gaps = 12/196 (6%)
Query: 389 HEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVN--EQIFQQVALGFLDT 446
+ ++ D L L P ++++ + + + L F +T
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFET 99
Query: 447 NPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGG-----IRTNTTVCVGKI 501
NP + ++ + + + A + + G +RT+ V +
Sbjct: 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVL 159
Query: 502 AHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAAT-QQYFLLSEVAQRILPALCQL 560
+ + P + A++ R+ +L + + + + +
Sbjct: 160 SDVVGPLK----MTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 561 STDPEKSVRDSAFKTI 576
D + +VR++A +
Sbjct: 216 VGDKDVNVRNAAINVL 231
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 48.8 bits (117), Expect = 3e-06
Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 57/251 (22%)
Query: 97 SADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENN 156
+ + +S V L+ L+HP+I+ + D + + + +Y+ +EY E L + + +
Sbjct: 45 TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE--GGDLASVITKGT 102
Query: 157 EKKQIYIS----WGIF-QITRALSFLINDADLRHNHVNH-----TSIFINSCGEWKLG-- 204
+++Q Y+ + Q+T AL + + V H ++F++ KLG
Sbjct: 103 KERQ-YLDEEFVLRVMTQLTLALKEC-HRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160
Query: 205 GLEYMEKISEASCIPMKRYSRYEDQST-------YQIPE--NSLSHVTKCSTDMYGLGIL 255
G ++ + + + Y PE N +S+ K D++ LG L
Sbjct: 161 G------LA-------RILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKS--DIWSLGCL 205
Query: 256 IWEVFNG--PLQSTNRKSL------SNIDNIPEN----LKRVYLELISERPNQRPNPAD- 302
++E+ P + ++K L IP L + +++ + RP+ +
Sbjct: 206 LYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 265
Query: 303 ----FIMRNRK 309
I+ +
Sbjct: 266 LENPLILEHHH 276
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 47.2 bits (112), Expect = 1e-05
Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 47/283 (16%)
Query: 63 VSFSGCFTQKHTFWKFHGGKKKGSNEKVTIFLNDSADTYEPALSYVKKLKTLRHPSILTF 122
V + + + + ++ T + S + ++++ + +
Sbjct: 67 VRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQ 126
Query: 123 LDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQ--IYISWGIF-QITRALSFLIN 179
L S K +Y+ ++ +L + + + + IF QI A+ FL
Sbjct: 127 LQP--SSPKVYLYIQMQLCRK--ENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFL-- 180
Query: 180 DADLRHNH-VNH----TS-IFINSCGEWKLG--GLEYMEKISEASCIPMKRYSRYEDQST 231
H+ + H S IF K+G GL E + Y +
Sbjct: 181 -----HSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTG 235
Query: 232 ------YQIPE--NSLSHVTKCSTDMYGLGILIWEVFNGPLQSTNRKS-LSNIDN--IPE 280
Y PE + ++ K D++ LG++++E+ R ++++ N P
Sbjct: 236 QVGTKLYMSPEQIHGNNYSHKV--DIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPL 293
Query: 281 NLKRVYLE-------LISERPNQRPNPADFIMRNRKPGGYFKN 316
+ Y + ++S P +RP D I+ N F+N
Sbjct: 294 LFTQKYPQEHMMVQDMLSPSPTERPEATD-IIEN----AIFEN 331
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 46.3 bits (109), Expect = 4e-05
Identities = 39/209 (18%), Positives = 72/209 (34%), Gaps = 21/209 (10%)
Query: 385 QMLEHEDYQAKIVPCVVKLF---GSNDRATRSRLLLQLEHFIGHVPDAI---VNEQIFQQ 438
Q LE + ++ + S D TRS L L++ + V + I +
Sbjct: 35 QKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSE 94
Query: 439 VALGFLDTNPTIRE---QTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDD---QGGIRT 492
D++P IR + +I N+ +L + L + L ++D +G
Sbjct: 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKL--CSLLDSEDYNTCEGAFGA 151
Query: 493 NTTVCVGKIAHHLHPQIRQKVL---ISAFSRAMRDPFPPARNAGVLALAA--TQQYFLLS 547
+C A L + + L I F + + P R+ V + + L
Sbjct: 152 LQKIC-EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210
Query: 548 EVAQRILPALCQLSTDPEKSVRDSAFKTI 576
+ L L+ D E VR + + +
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRAL 239
Score = 42.1 bits (98), Expect = 8e-04
Identities = 30/252 (11%), Positives = 76/252 (30%), Gaps = 34/252 (13%)
Query: 396 IVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVN--EQIFQQVALGFLDTNPTIREQ 453
+ + L G + R + L + D ++ I + + D + + +
Sbjct: 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALE 275
Query: 454 TVKSIIHLAPKLNYNNLNVETLRHFARLQAK-------------------------DDQG 488
+ + LA + ++ V L +
Sbjct: 276 ACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335
Query: 489 GIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQY---FL 545
+R + + +A+ ++ ++ + + +G+L L A + +
Sbjct: 336 NLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394
Query: 546 LSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESMEADVHTATP 605
+ + + ++P L Q +D + VR T+ + + + L+ M +
Sbjct: 395 IPYLPE-LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453
Query: 606 SLSN--AAATWA 615
S AA A
Sbjct: 454 SNKRVQEAACSA 465
Score = 38.2 bits (88), Expect = 0.011
Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 26/231 (11%)
Query: 390 EDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVN-EQIFQQVALGFLDTNP 448
E +I+ + + S D + + +LE PD + ++ +
Sbjct: 9 EQGLQQILQLLKESQ-SPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKLK----SEDE 62
Query: 449 TIREQ---TVKSIIHLAPKLNYNNLNVETLRHFAR--LQA-KDDQGGIRTNTTVCVGKIA 502
R +K+ + K ++ N L D IR + + IA
Sbjct: 63 PTRSLSGLILKNNV----KAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 118
Query: 503 HHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAA---TQQYFLLSEVAQR----ILP 555
Q L+ + AL L S+V R ++P
Sbjct: 119 SKGELQNWPD-LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177
Query: 556 ALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESMEADVHTATPS 606
Q +R A + F+ Q + + +E A
Sbjct: 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQ-ALMLHIDSFIENLFALAGDE 227
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 44.5 bits (106), Expect = 9e-05
Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 81 GKKKGSNEKVTI--FLNDSADTYEP--ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYL 136
+ + + + V I FL D AL ++ LK L+HP+++ L+ + ++L
Sbjct: 22 CRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRR--LHL 79
Query: 137 AVEYVEPIFYHLDNTLKENNEKKQIYISWG-----IFQITRALSFLINDADLRHNH-VNH 190
EY D+T+ ++ Q + +Q +A++F H H H
Sbjct: 80 VFEY-------CDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFC-------HKHNCIH 125
Query: 191 -----TSIFINSCGEWKLG--GLEYMEKISEASCIPMKRYSRY 226
+I I KL G + P Y
Sbjct: 126 RDVKPENILITKHSVIKLCDFGF------ARLLTGPSDYYDDE 162
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 44.1 bits (105), Expect = 1e-04
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 47/206 (22%)
Query: 81 GKKKGSNEKVTI--FLNDSADTYEP--ALSYVKKLKTLRHPSILTFLDSVESPSKSLVYL 136
+ K + V I FL D A+ +K LK LRH +++ L+ K YL
Sbjct: 44 CRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVC--KKKKRWYL 101
Query: 137 AVEYVEPIFYHLDNTLKENNEKKQIYISWG-----IFQITRALSFLINDADLRHNH-VNH 190
E+ +D+T+ ++ E + + +FQI + F H+H + H
Sbjct: 102 VFEF-------VDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFC-------HSHNIIH 147
Query: 191 -----TSIFINSCGEWKLG--GLEYMEKISEASCIPMKRYSRYEDQST--YQIPENSLSH 241
+I ++ G KL G + P + Y +T Y+ PE L
Sbjct: 148 RDIKPENILVSQSGVVKLCDFGF------ARTLAAPGEVYDDE--VATRWYRAPE-LLVG 198
Query: 242 VTKCST--DMYGLGILIWEVFNG-PL 264
K D++ +G L+ E+F G PL
Sbjct: 199 DVKYGKAVDVWAIGCLVTEMFMGEPL 224
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 43.9 bits (104), Expect = 1e-04
Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 53/263 (20%)
Query: 92 IFLNDSADTYEPALSYVKKLKTLRHPSILTFLDS--VESPSKSLVYLAVEYVE--PIFYH 147
I ++ D E A + HP+IL + E +K +L + + + ++
Sbjct: 62 ILCHEQQDR-EEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNE 120
Query: 148 LDNTLKENNEK---KQIYISWGIF-QITRALSFLINDADLRH-NHVNH-----TSIFINS 197
+ LK+ QI + I R L + H H T+I +
Sbjct: 121 I-ERLKDKGNFLTEDQI---LWLLLGICRGLEAI-------HAKGYAHRDLKPTNILLGD 169
Query: 198 CGEWKLGGLEYMEKISEASCIPMKRYSRYEDQST-----YQIPE--NSLSHVTK-CSTDM 249
G+ L L M + + + + + Y+ PE + SH TD+
Sbjct: 170 EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDV 229
Query: 250 YGLGILIWEV------FNGPLQSTNRKSL--SNIDNIPEN------LKRVYLELISERPN 295
+ LG +++ + ++ Q + +L N +IP++ L ++ +++ P+
Sbjct: 230 WSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPH 289
Query: 296 QRPNPAD-----FIMRNRKPGGY 313
QRP+ ++ PG +
Sbjct: 290 QRPHIPLLLSQLEALQPPAPGQH 312
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 43.9 bits (103), Expect = 2e-04
Identities = 39/262 (14%), Positives = 79/262 (30%), Gaps = 18/262 (6%)
Query: 351 PKLISCHKVLPQLINAFEYGEAGASVLSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRA 410
L++ V A Y LS L + D +I+P +V+L ND
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247
Query: 411 TRSRLLLQLEHFIGHVPD---AIVNEQIFQQVALGFLDTNPTIREQTVKSIIHLA---PK 464
+ + + + +V + + Q+ T I +++I ++ +
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307
Query: 465 LNYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQ---IRQKVLISAFSRA 521
++ L F L + + I+ T + I Q + L+
Sbjct: 308 QTQKVIDAGALAVFPSL-LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366
Query: 522 MRDPFPPARNAGVLALAA------TQQYFLLSEVAQRILPALCQLSTDPEKSVRDSAFKT 575
+ + A+ +Q L V I+ L L + + +
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYL--VHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 576 IKGFLGKLEQVSENPSLRESME 597
I E++ E L +E
Sbjct: 425 ISNIFQAAEKLGETEKLSIMIE 446
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 43.5 bits (103), Expect = 2e-04
Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 69/294 (23%)
Query: 81 GKKKGSNEKVTI-FLNDSADTYEPALSYVKKLKTLRHPSILTFLDS-----------VES 128
+ + I + + + LS V L +L H ++ + +
Sbjct: 25 ARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84
Query: 129 PSKSLVYLAVEYV---EPIFYHLDNTLKENNEKKQIYISWGIF-QITRALSFLINDADLR 184
KS +++ +EY L + + N +Q W +F QI ALS++
Sbjct: 85 KKKSTLFIQMEYCENGT-----LYDLIHSENLNQQRDEYWRLFRQILEALSYI------- 132
Query: 185 HNH---------VNHTSIFINSCGEWKLG--GL--EYMEKISEASCIPMKRYSRYEDQST 231
H+ +N IFI+ K+G GL + ++ ++
Sbjct: 133 HSQGIIHRDLKPMN---IFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTS 189
Query: 232 ------YQIPE---NSLSHVTKCSTDMYGLGILIWEVFNGPLQSTNRKSLSNI------- 275
Y E + + K DMY LGI+ +E+ R ++
Sbjct: 190 AIGTAMYVATEVLDGTGHYNEKI--DMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIE 247
Query: 276 ------DNIPENLKRVYLELISERPNQRPNPADFIMRNRKPGGYFKNDLIDALL 323
DN + K++ LI PN+RP ++ + ++++I L
Sbjct: 248 FPPDFDDNKMKVEKKIIRLLIDHDPNKRPGART-LLNSGWLPVKHQDEVIKEAL 300
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 42.8 bits (101), Expect = 3e-04
Identities = 48/273 (17%), Positives = 95/273 (34%), Gaps = 74/273 (27%)
Query: 81 GKKKGSNEKVTI----FLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYL 136
K + I S+ E + V L ++HP+I+ + +S E +Y+
Sbjct: 43 VKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFE--ENGSLYI 100
Query: 137 AVEYVEPIFYHLDNTLKEN-NEKKQIYIS----WGIF-QITRALSFLINDADLRH-NHVN 189
++Y E L + N +K + F QI AL + H +
Sbjct: 101 VMDYCE------GGDLFKRINAQKGVLFQEDQILDWFVQICLALKHV-------HDRKIL 147
Query: 190 H-----TSIFINSCGEWKLG--GLEYMEKISEASCIPMKRYSRYEDQST-------YQIP 235
H +IF+ G +LG G I+ + + + + Y P
Sbjct: 148 HRDIKSQNIFLTKDGTVQLGDFG------IA-------RVLNSTVELARACIGTPYYLSP 194
Query: 236 E--NSLSHVTKCSTDMYGLGILIWEVFNG--PLQSTNRKSL------SNIDNIPEN---- 281
E + + K D++ LG +++E+ ++ + K+L + + +
Sbjct: 195 EICENKPYNNKS--DIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYD 252
Query: 282 LKRVYLELISERPNQRPNPAD-----FIMRNRK 309
L+ + +L P RP+ FI + +
Sbjct: 253 LRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIE 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 42.5 bits (100), Expect = 4e-04
Identities = 40/283 (14%), Positives = 78/283 (27%), Gaps = 60/283 (21%)
Query: 368 EYGEAGASVLSPLFKIGQMLEHEDYQ--------------AKIVPCVVKLFGSNDRATRS 413
Y + LF ++L+ + V ++ + R
Sbjct: 16 LYNQCKKLNDDELF---RLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRD 72
Query: 414 ---RLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNL 470
+L Q++ + I +AL D + +R ++S K N +
Sbjct: 73 IGAFILGQIKICKKCEDNVFN---ILNNMALN--DKSACVRATAIESTAQRCKK---NPI 124
Query: 471 NVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPAR 530
+ +++ A D +R T + I K I ++DP R
Sbjct: 125 YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVR 176
Query: 531 NAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENP 590
N A+ + I ++ D + VR A L +
Sbjct: 177 NWAAFAIN------INKYDNSDIRDCFVEMLQDKNEEVRIEAIIG----LSYRKDKRVLS 226
Query: 591 SLRESME-ADVH-------------TATPSLSNAAATWADWAV 619
L + ++ V+ T P L + D +
Sbjct: 227 VLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEI 269
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 42.2 bits (98), Expect = 7e-04
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 485 DDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAA---TQ 541
DD VC+ +A I ++ +++P R+A V+A
Sbjct: 339 DDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397
Query: 542 QYFLLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENP 590
+ L + + +P L +L DP VRD+A T+ L + + N
Sbjct: 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
Score = 35.6 bits (81), Expect = 0.091
Identities = 40/374 (10%), Positives = 98/374 (26%), Gaps = 34/374 (9%)
Query: 252 LGILIWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLELISERPNQRPNPADFIMRNRKPG 311
L + E + + + N+ + + +E RP + + G
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP--PEHTSKFYAKG 317
Query: 312 GYFKNDLIDALLFLEEIQMKDKIDKNKFFNGLASAIDKFPKLISCHKVLPQLINAFEYG- 370
L+ L Q ++ D + A ++P ++ +
Sbjct: 318 AL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375
Query: 371 --------EAGASVLSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHF 422
+A + + + + + + +P +++L R +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 423 IGHVPDAIVNEQIFQQV---ALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFA 479
+P+A +N+ + + L P + + LA + A
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495
Query: 480 RLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKV---LISAFSRAMRDPFPP-------- 528
I + H +R L+ + +D +P
Sbjct: 496 TYCLSSSFELIVQKLLETTDRPDGH-QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVI 554
Query: 529 -ARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKSVRDSAF-----KTIKGFLGK 582
R VL + + Q + LC + + V+ + L
Sbjct: 555 MERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRM 614
Query: 583 LEQVSENPSLRESM 596
+ + + ++E
Sbjct: 615 FQSTAGSGGVQEDA 628
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 41.5 bits (98), Expect = 8e-04
Identities = 37/245 (15%), Positives = 89/245 (36%), Gaps = 66/245 (26%)
Query: 108 VKKLKTLRHPSILTFLDSVE--------------SPSKSLVYLAVEYVE--PIFYHLDNT 151
VK L L H +I+ + + +++ +E+ + + ++
Sbjct: 55 VKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKR 114
Query: 152 LKENNEKKQIYISWGIF-QITRALSFLINDADLRH-NHVNH----TS-IFINSCGEWKLG 204
E +K +F QIT+ + ++ H + + S IF+ + K+G
Sbjct: 115 RGEKLDKVLA---LELFEQITKGVDYI-------HSKKLINRDLKPSNIFLVDTKQVKIG 164
Query: 205 --GL-EYMEKISEASCI---PMKRYSRYEDQSTYQIPE--NSLSHVTKCSTDMYGLGILI 256
GL ++ + + Y PE +S + + D+Y LG+++
Sbjct: 165 DFGLVTSLKNDGKRTRSKGTLR-----------YMSPEQISSQDYGKEV--DLYALGLIL 211
Query: 257 WEVFNGPLQSTNRKSL-SNIDNIP------ENLKRVYLELISERPNQRPNPAD-----FI 304
E+ + + +++ + + K + +L+S++P RPN ++ +
Sbjct: 212 AELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTV 271
Query: 305 MRNRK 309
+
Sbjct: 272 WKKSP 276
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.5 bits (94), Expect = 8e-04
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 808 TEPSIKMEES---RKRREEKKMARQKELEAKRAAKQSGGPLKLGAKK 851
+ +E RK REE++ R +EL+A + + AKK
Sbjct: 75 AQADRLTQEPESIRKWREEQR-KRLQELDAASKVMEQE--WREKAKK 118
Score = 33.2 bits (75), Expect = 0.20
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 801 EWSPIEETEPSI--KMEESRKRREEKKMARQKELEA--KRAAKQ 840
+W EE + S+ +E + +K+LE +R ++Q
Sbjct: 89 KWR--EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 41.7 bits (97), Expect = 0.001
Identities = 40/360 (11%), Positives = 101/360 (28%), Gaps = 52/360 (14%)
Query: 275 IDNIPENLKRVYLELISERPNQRPNPADFIMRNRKPGGYFKNDLIDALLFLEEIQMKDKI 334
+ + + + + +E S + + A + + + N + ++ + +
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334
Query: 335 DKNKF--------FNGLASAIDKFPKLISCHKVLPQLINAFE---------YGEAGASVL 377
+N+ + + F + + +L ++ E EA
Sbjct: 335 RQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAF 393
Query: 378 SPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQ 437
+ ++ Y + +P ++ L + + V ++I +Q
Sbjct: 394 GSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453
Query: 438 QVA---LGFLDTNPTIREQTVKSIIHLA---------PKLNYNNLNVETLRHFARLQAKD 485
V L L +P + +II+L P N+ V+ L D
Sbjct: 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL--IGAANRID 511
Query: 486 DQGGIRTNTTVCVGKIAHHLHPQIRQKV------LISAFSRAMRDPFPPARNAGVLALAA 539
++ R + + + + + + ++ + M +L
Sbjct: 512 NEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571
Query: 540 TQQYFL-------------LSEVAQRILPALCQ-LSTDPEKSVRDSAFKTIKGFLGKLEQ 585
Q L + VA ++ + L + D F I L +
Sbjct: 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK 631
Score = 34.0 bits (77), Expect = 0.26
Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 15/186 (8%)
Query: 402 KLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIREQTVKSIIHL 461
S D + + +I V N QI + P I + I +
Sbjct: 67 NELVSKDSVKTQQFA---QRWITQVSPEAKN-QIKTNALTALVSIEPRIANAAAQLIAAI 122
Query: 462 APKLNYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQ------KVLI 515
A + E ++ + ++ + + +G + PQ + +LI
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182
Query: 516 SAFSRAMRDPF-PPARNAGVLALAA----TQQYFLLSEVAQRILPALCQLSTDPEKSVRD 570
+ A R A + ALA + ++ +C+ + + V+
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242
Query: 571 SAFKTI 576
+AF +
Sbjct: 243 AAFGCL 248
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 39.6 bits (93), Expect = 0.003
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 28/140 (20%)
Query: 81 GKKKGSNEKV---TIFLNDSADTYE--PALSYVKKLKTLRHPSILTFLDSVESPSKSLVY 135
V + + D D + + LK L HP+++ + S ++ +
Sbjct: 51 AACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE--LN 108
Query: 136 LAVEYVEPIFYHLDNTLKENNEKKQIYIS----WGIF-QITRALSFLINDADLRH-NHVN 189
+ +E + L +K ++K+ I W F Q+ AL + H V
Sbjct: 109 IVLELAD--AGDLSRMIKHFKKQKR-LIPERTVWKYFVQLCSALEHM-------HSRRVM 158
Query: 190 H-----TSIFINSCGEWKLG 204
H ++FI + G KLG
Sbjct: 159 HRDIKPANVFITATGVVKLG 178
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 39.3 bits (91), Expect = 0.003
Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 445 DTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARL---QAKDDQGGIRTNTTVCVGKI 501
D N +S+ + KL + + + + K+ + + + I
Sbjct: 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTI 131
Query: 502 AHHLHPQIRQKVL---ISAFSRAMRDPFPPARNAGVLALAAT------QQYFLLSEVAQR 552
+ P + M+ P R A+ L +
Sbjct: 132 CKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDE 191
Query: 553 ILPALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENP 590
++P + Q+ D + ++R F++ L K+ N
Sbjct: 192 VVPIVIQIVNDTQPAIRTIGFESF-AILIKI--FGMNT 226
Score = 37.0 bits (85), Expect = 0.018
Identities = 27/246 (10%), Positives = 66/246 (26%), Gaps = 65/246 (26%)
Query: 324 FLEEIQMKDKIDKNKFFNGLASA----------------IDKFPKLISCHKVLPQLINA- 366
L E + DK+ K+ F + S+ + + KL S + L+
Sbjct: 7 MLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 367 ---------FEYGEAGASVLSPLFK-IGQMLEHEDYQAKIVPCVVKLFGSNDRATR---S 413
+ A + + + +DY + + ++ +
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 414 RLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVE 473
+ LL + + + + NE + + + P IR + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA------------- 172
Query: 474 TLRHFARLQAKDDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAG 533
++ K + + + ++ + + D P R G
Sbjct: 173 ---------------------SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211
Query: 534 VLALAA 539
+ A
Sbjct: 212 FESFAI 217
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 39.0 bits (92), Expect = 0.005
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 33/129 (25%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE----PIFYHLDNTLKENNEKKQIYI 163
+ LK L+H +I+ D + + + + L E+++ + + L+ K +
Sbjct: 51 ISILKELKHSNIVKLYDVIHTKKR--LVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLL- 107
Query: 164 SWGIFQITRALSFLINDADLRH-NHVNH-----TSIFINSCGEWKLG--GLEYMEKISEA 215
Q+ +++ H V H ++ IN GE K+ GL + A
Sbjct: 108 -----QLLNGIAYC-------HDRRVLHRDLKPQNLLINREGELKIADFGL------ARA 149
Query: 216 SCIPMKRYS 224
IP+++Y+
Sbjct: 150 FGIPVRKYT 158
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 39.0 bits (91), Expect = 0.005
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK L H +I+ E + L +E+
Sbjct: 61 LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCP 92
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 38.7 bits (91), Expect = 0.006
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE----PIFYHLDNTLKENNEKKQIYI 163
+ LK L+H +I+ D + S K + L E+ + F + L K ++
Sbjct: 52 ICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLF- 108
Query: 164 SWGIFQITRALSFLINDADLRH-NHVNH----TS-IFINSCGEWKLG--GLEYMEKISEA 215
Q+ + L F H +V H + IN GE KL GL + A
Sbjct: 109 -----QLLKGLGFC-------HSRNVLHRDLKPQNLLINRNGELKLANFGL------ARA 150
Query: 216 SCIPMKRYS 224
IP++ YS
Sbjct: 151 FGIPVRCYS 159
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 37.9 bits (89), Expect = 0.009
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 33/129 (25%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE----PIFYHLDNTLKENNEKKQIYI 163
+ LK L HP+I++ +D + S+ + L E++E + L+++ K +Y
Sbjct: 70 ISLLKELHHPNIVSLIDVI--HSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLY- 126
Query: 164 SWGIFQITRALSFLINDADLRH-NHVNH----TS-IFINSCGEWKLG--GLEYMEKISEA 215
Q+ R ++ H + + H + INS G KL GL + A
Sbjct: 127 -----QLLRGVAHC-------HQHRILHRDLKPQNLLINSDGALKLADFGL------ARA 168
Query: 216 SCIPMKRYS 224
IP++ Y+
Sbjct: 169 FGIPVRSYT 177
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 38.3 bits (88), Expect = 0.011
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 497 CVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQ---QYFLLSEVAQRI 553
C+ +A I ++ +++P R+A V+A + L + +
Sbjct: 351 CLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409
Query: 554 LPALCQLSTDPEKSVRDSAFKTI 576
+P L +L DP VRD+A T+
Sbjct: 410 MPTLIELMKDPSVVVRDTAAWTV 432
Score = 29.8 bits (66), Expect = 4.4
Identities = 14/133 (10%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 316 NDLIDALLFLEEIQMKDKIDKNKFFNGLASAIDKFPKLISCHKVLPQLINAFE------- 368
L+ L Q ++ D + A ++P ++ +
Sbjct: 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379
Query: 369 --YGEAGASVLSPLFKIGQMLEHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHV 426
Y +A + + + + + + +P +++L R + +
Sbjct: 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 427 PDAIVNEQIFQQV 439
P+A +N+ +
Sbjct: 440 PEAAINDVYLAPL 452
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 37.9 bits (88), Expect = 0.012
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK L H +I+ E + L +E+
Sbjct: 61 LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCP 92
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 35.7 bits (83), Expect = 0.012
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 28/129 (21%)
Query: 445 DTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQA-KDDQGGIRTNTTVCVGKIAH 503
D N +R ++ + + E L L++ ++ IR +G
Sbjct: 23 DENKWVRRDVSTALSRMGDE------AFEPL-----LESLSNEDWRIRGAAAWIIGNF-- 69
Query: 504 HLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTD 563
+ + + + + D R+ +L +R+ A+ +L+
Sbjct: 70 ------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAET 115
Query: 564 PEKSVRDSA 572
R A
Sbjct: 116 GTGFARKVA 124
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 37.7 bits (88), Expect = 0.013
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 105 LSYVKKLKTLRHPSILTFLDSVESPSKSL---VYLAV--EYVEPIFYH-LDNTLKENNEK 158
L ++ L L HP+I+ + + +YL V EYV + N +
Sbjct: 67 LQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAP 126
Query: 159 KQIYISWGIFQITRALSFL 177
I I +FQ+ R++ L
Sbjct: 127 PPILIKVFLFQLIRSIGCL 145
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 37.5 bits (88), Expect = 0.013
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 32/129 (24%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE----PIFYHLDNTLKENNEKKQIYI 163
+ LK L HP+I+ LD + + +K +YL E++ T K
Sbjct: 53 ISLLKELNHPNIVKLLDVIHTENK--LYLVFEFLHQDLKKFMDASALTGIPLPLIKSY-- 108
Query: 164 SWGIFQITRALSFLINDADLRH-NHVNH----TS-IFINSCGEWKLG--GLEYMEKISEA 215
+FQ+ + L+F H + V H + IN+ G KL GL + A
Sbjct: 109 ---LFQLLQGLAFC-------HSHRVLHRDLKPQNLLINTEGAIKLADFGL------ARA 152
Query: 216 SCIPMKRYS 224
+P++ Y+
Sbjct: 153 FGVPVRTYT 161
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85;
cyclin-dependent kinase, signaling protein,transfera
cycle complex; HET: MES AGS; 2.90A {Saccharomyces
cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 37.6 bits (88), Expect = 0.014
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 38/134 (28%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE---------PIFYHLDNTLKENNEK 158
+ +K L+H +I+ D + + +K + L E+++ + L+ N K
Sbjct: 54 ISLMKELKHENIVRLYDVIHTENK--LTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVK 111
Query: 159 KQIYISWGIFQITRALSFLINDADLRH-NHVNH----TS-IFINSCGEWKLG--GLEYME 210
+ Q+ + L+F H N + H + IN G+ KLG GL
Sbjct: 112 YFQW------QLLQGLAFC-------HENKILHRDLKPQNLLINKRGQLKLGDFGL---- 154
Query: 211 KISEASCIPMKRYS 224
+ A IP+ +S
Sbjct: 155 --ARAFGIPVNTFS 166
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 37.2 bits (87), Expect = 0.016
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 35/130 (26%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISWG- 166
V LK L+H +I+T D + ++ + L EY LD LK+ + I+
Sbjct: 51 VSLLKDLKHANIVTLHDII--HTEKSLTLVFEY-------LDKDLKQYLDDCGNIINMHN 101
Query: 167 ----IFQITRALSFLINDADLRH-NHVNH-----TSIFINSCGEWKLG--GLEYMEKISE 214
+FQ+ R L++ H V H ++ IN GE KL GL +
Sbjct: 102 VKLFLFQLLRGLAYC-------HRQKVLHRDLKPQNLLINERGELKLADFGL------AR 148
Query: 215 ASCIPMKRYS 224
A IP K Y
Sbjct: 149 AKSIPTKTYD 158
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 37.2 bits (87), Expect = 0.017
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDNTLKENNEKKQIYISWGIF 168
LRHP+IL ++ VYL +EY ++ L K + ++ YI+
Sbjct: 63 QSHLRHPNILRLYGYFHDATR--VYLILEYAPLGTVYRELQKLSKFDEQRTATYIT---- 116
Query: 169 QITRALSFL 177
++ ALS+
Sbjct: 117 ELANALSYC 125
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 36.5 bits (83), Expect = 0.021
Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 11/141 (7%)
Query: 432 NEQIFQQVALGFLDTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIR 491
E I + L + +R V +L+ E L +KD+ ++
Sbjct: 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDK-------EILIFMRDEVSKDNNWRVQ 121
Query: 492 TNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQ 551
+ + + ++ ++ R A L E
Sbjct: 122 EVLAKAFDEFCKKIEYKKALPII----DEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN 177
Query: 552 RILPALCQLSTDPEKSVRDSA 572
+ + L D + VR S
Sbjct: 178 EAIRRIADLKEDVSEYVRKSV 198
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 36.7 bits (86), Expect = 0.022
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEP--IFYHLDNTLKENNEKKQIYISWGIF 168
L+HPSIL + E + VYL +E + +L N +K +E + + +
Sbjct: 65 HCQLKHPSILELYNYFEDSNY--VYLVLEMCHNGEMNRYLKNRVKPFSENEARHF---MH 119
Query: 169 QITRALSFLINDADLRH-NHVNH-----TSIFINSCGEWKLG--GL 206
QI + +L H + + H +++ + K+ GL
Sbjct: 120 QIITGMLYL-------HSHGILHRDLTLSNLLLTRNMNIKIADFGL 158
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 37.0 bits (86), Expect = 0.023
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 82 KKKGSNEKVTIFLNDSADTYEPALSYVKK----LKTLRHPSILTFLDSVESPSKSLVYLA 137
K ++ N+ + + K + +++ LT + + + VY+
Sbjct: 64 KSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDE--VYII 121
Query: 138 VEYVE--PIFYHLDNTLKENNEKKQIYISWG----IFQITRALSFL 177
EY+E I + + I + + S++
Sbjct: 122 YEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI 167
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 36.8 bits (86), Expect = 0.024
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEP--IFYHLDNTLKENNEKKQIYISWGIF 168
LRHP+IL + + +YL +E+ ++ L + + ++ ++
Sbjct: 68 QSHLRHPNILRMYNYFHDRKR--IYLMLEFAPRGELYKELQKHGRFDEQRSATFME---- 121
Query: 169 QITRALSFL 177
++ AL +
Sbjct: 122 ELADALHYC 130
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 36.6 bits (85), Expect = 0.026
Identities = 46/216 (21%), Positives = 70/216 (32%), Gaps = 43/216 (19%)
Query: 108 VKKLKTLRHPSILTFLDS--VESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISW 165
+ LK L+HP+I+ F DS K + L E + L LK K +
Sbjct: 76 AEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTS--GTLKTYLKRFKVMKIKVLRS 133
Query: 166 GIFQITRALSFLINDADLRHNH---VNH-----TSIFINS-CGEWKLG--GLEYMEKISE 214
QI + L FL H + H +IFI G K+G GL
Sbjct: 134 WCRQILKGLQFL-------HTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL-------- 178
Query: 215 ASCIPMKRYSRYEDQST--YQIPENSLSHVTKCSTDMYGLGILIWEVFNGPLQSTNRKSL 272
+ T + PE S D+Y G+ + E+ T+
Sbjct: 179 --ATLKRASFAKAVIGTPEFMAPEMYEEKYD-ESVDVYAFGMCMLEMA------TSEYPY 229
Query: 273 SNIDNIPENLKRVYLELISERPNQRPNPA--DFIMR 306
S N + +RV + ++ P + I
Sbjct: 230 SECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEG 265
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas;
spindle assembly checkpoint, mitosis, kinase,
activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo
sapiens}
Length = 365
Score = 36.5 bits (84), Expect = 0.029
Identities = 26/197 (13%), Positives = 61/197 (30%), Gaps = 31/197 (15%)
Query: 109 KKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDNTLKENNEKK--QIYIS 164
++LK + F + + S L E + + N K EK Q +
Sbjct: 119 ERLKPSMQHMFMKFYSAHLFQNGS--VLVGELYSYGTLLNAI-NLYKNTPEKVMPQGLVI 175
Query: 165 WGIFQITRALSFL----INDADLR-HNHVNHTSIFINSCGEWKLGGLEYMEKISE-ASCI 218
++ + + I D++ N + + GL + + I
Sbjct: 176 SFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGL----ALIDLGQSI 231
Query: 219 PMKRYSRYEDQST------YQIPE--NSLSHVTKCSTDMYGLGILIWE-VFNGPLQSTNR 269
MK + + + +Q E ++ + D +G+ ++ +F ++ N
Sbjct: 232 DMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQI--DYFGVAATVYCMLFGTYMKVKNE 289
Query: 270 KSLSNIDNIPENLKRVY 286
+ +R+
Sbjct: 290 GGECKPE---GLFRRLP 303
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 36.6 bits (84), Expect = 0.035
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 246 STDMYGLGILIWEV------FNGP-LQSTNRKSLSNIDNIPENLKRVYLELISERPNQRP 298
+ D + LG+ I+ + + + NIP+ ++ + + R
Sbjct: 297 AFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRL 356
Query: 299 NPAD 302
P
Sbjct: 357 LPLQ 360
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo
sapiens}
Length = 405
Score = 36.3 bits (84), Expect = 0.035
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYH-----LDNTLKENNEKKQIYISW 165
L+ L+HP++++ S + V+L +Y E H + KK + +
Sbjct: 72 LRELKHPNVISLQKVFLSHADRKVWLLFDYAE----HDLWHIIKFHRASKANKKPVQLPR 127
Query: 166 G-----IFQITRALSFL 177
G ++QI + +L
Sbjct: 128 GMVKSLLYQILDGIHYL 144
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 35.7 bits (83), Expect = 0.035
Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 54/220 (24%)
Query: 388 EHEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFLDTN 447
H D + V +K + R L G + D E + + AL D +
Sbjct: 9 HHTD--PEKVEMYIKNLQDDSYYVRRAAAYAL----GKIGDERAVEPLIK--ALK--DED 58
Query: 448 PTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIA----- 502
+R ++ + + VE L KD+ G +R + V +G+I
Sbjct: 59 AWVRRAAADALGQIGDERA-----VEPLIKAL----KDEDGWVRQSAAVALGQIGDERAV 109
Query: 503 -------HHLHPQIRQKVL-----------ISAFSRAMRDPFPPARNAGVLALAATQQYF 544
+R + +A++D R + AL
Sbjct: 110 EPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG--- 166
Query: 545 LLSEVAQRILPALCQLSTDPEKSVRDSAFKTIKGFLGKLE 584
+R+ A+ +L+ R A L +
Sbjct: 167 -----GERVRAAMEKLAETGTGFARKVAVNY----LETHK 197
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 35.4 bits (82), Expect = 0.041
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 508 QIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKS 567
+I + + +A++D R A AL +R + L + D +
Sbjct: 45 KIGDERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGW 96
Query: 568 VRDSAFKTIKGFLGKL 583
VR SA LG++
Sbjct: 97 VRQSAAVA----LGQI 108
Score = 35.4 bits (82), Expect = 0.043
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 14/83 (16%)
Query: 508 QIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKS 567
+I + + +A++D R + AL +R+ A+ +L+
Sbjct: 138 EIGDERAVEPLIKALKDEDGWVRQSAADALGEIG--------GERVRAAMEKLAETGTGF 189
Query: 568 VRDSAFKTIKGFLGKLEQVSENP 590
R A L + S N
Sbjct: 190 ARKVAVNY----LETHK--SFNH 206
Score = 29.6 bits (67), Expect = 3.3
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 508 QIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQRILPALCQLSTDPEKS 567
QI + + +A++D R + +AL +R + L + D +
Sbjct: 76 QIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWF 127
Query: 568 VRDSA 572
VR +A
Sbjct: 128 VRIAA 132
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 36.1 bits (84), Expect = 0.046
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 108 VKKLKTLR-HPSILTFLDSVESPSKSLVYLAVEYVEPI-FYHLDNTLKENNEKKQIYISW 165
+K L+ LR P+I+T D V+ P L E+V F L TL + + Y
Sbjct: 81 IKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTL--TDYDIRFY--- 135
Query: 166 GIFQITRALSF 176
+++I +AL +
Sbjct: 136 -MYEILKALDY 145
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 36.0 bits (84), Expect = 0.049
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 33/129 (25%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE----PIFYHLDNTLKENNEKKQIYI 163
+K L+ L HP+I+ LD+ KS + L +++E I L ++ K
Sbjct: 63 IKLLQELSHPNIIGLLDAF--GHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIK----- 115
Query: 164 SWGIFQITRALSFLINDADLRHNH-VNH----TS-IFINSCGEWKLG--GLEYMEKISEA 215
++ + + L +L H H + H + + ++ G KL GL +++
Sbjct: 116 AY-MLMTLQGLEYL-------HQHWILHRDLKPNNLLLDENGVLKLADFGL------AKS 161
Query: 216 SCIPMKRYS 224
P + Y+
Sbjct: 162 FGSPNRAYT 170
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 35.3 bits (82), Expect = 0.063
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK L HP+++ ++ ++ P++ +Y+ E V
Sbjct: 90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVN 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 34.9 bits (80), Expect = 0.074
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 8/68 (11%)
Query: 517 AFSRAMRDPFPPARNAGVLALAATQQYFLLS--------EVAQRILPALCQLSTDPEKSV 568
+ +DP P R L LL + + +P+ V
Sbjct: 174 SLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEV 233
Query: 569 RDSAFKTI 576
R + +
Sbjct: 234 RLAIAGRL 241
Score = 31.4 bits (71), Expect = 0.99
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 40/137 (29%)
Query: 445 DTNPTIREQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGIRTNTTVCVGKIAHH 504
D++ +R L E L D+ +R +A
Sbjct: 85 DSDEVVRRAVAY------------RLPREQLSALM----FDEDREVRIT-------VADR 121
Query: 505 LHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLS--------EVAQRI-LP 555
L + + D R V + + + + VA+R+
Sbjct: 122 LPLE--------QLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEE 173
Query: 556 ALCQLSTDPEKSVRDSA 572
+L ++ DPE VR
Sbjct: 174 SLGLMTQDPEPEVRRIV 190
Score = 30.6 bits (69), Expect = 1.9
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 529 ARNAGVLALAATQQYFLLSEVAQRILP--ALCQLSTDPEKSVRDSA 572
N + ++ +A R P AL L D ++ VR +
Sbjct: 49 RNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAV 94
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 34.9 bits (81), Expect = 0.093
Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 80/236 (33%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHL-DNTLKENNEKKQIYIS 164
+L+ HP++L L + +SP L ++ ++ L + T ++ + + +
Sbjct: 58 CPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFA 117
Query: 165 WGIFQITRALSFL--------------------------INDADLRHNHVNHTSIFINSC 198
+ R ++FL I+ AD+ S
Sbjct: 118 ---LDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADV--------KFSFQSP 166
Query: 199 GEWKLGGLEYM--EKISEASCIPMKRYSRYEDQSTYQIPENSLSHVTKCSTDMYGLGILI 256
G ++ ++ E + K DM+ +L+
Sbjct: 167 G--RMYAPAWVAPEALQ------KKPEDTN---------------RRSA--DMWSFAVLL 201
Query: 257 WEVFNG--------PLQSTNRKSLSNID-NIPENLKRVYLELI----SERPNQRPN 299
WE+ ++ + +L + IP + +L+ +E P +RP
Sbjct: 202 WELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPK 257
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 35.0 bits (80), Expect = 0.10
Identities = 29/234 (12%), Positives = 71/234 (30%), Gaps = 36/234 (15%)
Query: 97 SADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENN 156
A + + +K + ++ + ++ L ++
Sbjct: 138 QAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHS 197
Query: 157 EKKQIYISW---GIF-QITRALSFLINDADLRHNH-VNHT-----SIFINSCGEWKLGGL 206
+ + + Q+ R L+ L H++ + HT I ++ G L G
Sbjct: 198 STHKSLVHHARLQLTLQVIRLLASL-------HHYGLVHTYLRPVDIVLDQRGGVFLTGF 250
Query: 207 EYMEKISEASCIPMKRY-------SRYEDQSTYQIPENSLSHVTKCSTDMYGLGILIWEV 259
E++ + + R +R S ++ ++ S D + LG++I+ +
Sbjct: 251 EHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTF----SFDAWALGLVIYWI 306
Query: 260 ------FNGP-LQSTNRKSLSNIDNIPENLKRVYLELISERPNQRPNPADFIMR 306
+ + NIP+ ++ + + R P M
Sbjct: 307 WCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQ-AME 359
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 34.1 bits (79), Expect = 0.14
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
K L H +++ F + YL +EY
Sbjct: 59 NKMLNHENVVKFYGHRREGNI--QYLFLEYCS 88
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 34.1 bits (79), Expect = 0.15
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
+ ++L H ++ F E V++ +E
Sbjct: 66 ISIHRSLAHQHVVGFHGFFEDNDF--VFVVLELC 97
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 34.1 bits (79), Expect = 0.17
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK ++H +I+T D ES + YL ++ V
Sbjct: 60 LKKIKHENIVTLEDIYESTTH--YYLVMQLVS 89
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 33.8 bits (78), Expect = 0.19
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
K L H +++ F + YL +EY
Sbjct: 59 NKMLNHENVVKFYGHRREGNI--QYLFLEYCS 88
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 33.8 bits (78), Expect = 0.24
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
++L H ++ F E V++ +E
Sbjct: 95 HRSLAHQHVVGFHGFFEDNDF--VFVVLELC 123
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 33.5 bits (77), Expect = 0.24
Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 64/221 (28%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAV--EYVEPIFYH--LDNTLKENNEKKQIYI 163
+ + LRH +IL F+ + + + L + +Y E H L + L + I
Sbjct: 48 IYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHE----HGSLFDYLNRYTVTVEGMI 103
Query: 164 SWGIFQITRALSFLINDADLRHNHVNHTS--------------IFINSCGEWKLG--GLE 207
+ L+ L H + T I + G + GL
Sbjct: 104 KLAL-STASGLAHL-------HMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL- 154
Query: 208 YMEKISEASCIPMKRYSRYEDQSTYQI-------PE---NSLSHVTKCST---DMYGLGI 254
+ + +++ PE +S++ S D+Y +G+
Sbjct: 155 --------AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL 206
Query: 255 LIWEVFNGPLQSTNRKSLSNIDNIPENLKRVYLELISERPN 295
+ WE+ +I I E+ + Y +L+ P+
Sbjct: 207 VFWEIA----------RRCSIGGIHEDYQLPYYDLVPSDPS 237
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 33.4 bits (77), Expect = 0.26
Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 59/227 (25%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDNTLKENNEKKQIYISW 165
V L+ RH +IL F+ +P ++V ++ E +++HL + + KK I I+
Sbjct: 71 VGVLRKTRHVNILLFMGYSTAPQLAIV---TQWCEGSSLYHHLHASETKFEMKKLIDIA- 126
Query: 166 GIFQITRALSFL----INDADLR-HNHVNHTSIFINSCGEWKLG--GLEYMEKISEASCI 218
Q R + +L I DL+ +N IF++ K+G GL +
Sbjct: 127 --RQTARGMDYLHAKSIIHRDLKSNN------IFLHEDNTVKIGDFGL---------ATE 169
Query: 219 PMKRYSRYEDQS---TYQ------IPENSLSHVT-KCSTDMYGLGILIWEVFNG------ 262
+ ++ + + I + + + D+Y GI+++E+ G
Sbjct: 170 KSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS--DVYAFGIVLYELMTGQLPYSN 227
Query: 263 --PLQS--------TNRKSLSNI-DNIPENLKRVYLELISERPNQRP 298
+ LS + N P+ +KR+ E + ++ ++RP
Sbjct: 228 INNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERP 274
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 33.5 bits (77), Expect = 0.28
Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ ++LRHP+I+ F + + +P+ + + +EY
Sbjct: 67 IINHRSLRHPNIVRFKEVILTPTH--LAIIMEYAS 99
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 33.4 bits (77), Expect = 0.33
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 27/128 (21%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYHLDNTLKENNEKKQIYISWGI 167
V LK L+H +I+ + + ++L EY E L + +N + I +
Sbjct: 84 VSLLKELQHRNIIELKSVIHHNHR--LHLIFEYAE---NDLKKYMDKNPDVSMRVIKSFL 138
Query: 168 FQITRALSFLINDADLRHNH-VNH-----TSIFINSCGEWKLGGLEYMEKI-----SEAS 216
+Q+ ++F H+ H ++ ++ + L KI + A
Sbjct: 139 YQLINGVNFC-------HSRRCLHRDLKPQNLLLSVSDASETPVL----KIGDFGLARAF 187
Query: 217 CIPMKRYS 224
IP+++++
Sbjct: 188 GIPIRQFT 195
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 32.9 bits (76), Expect = 0.33
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
++ LK RHP I+ + +P+ ++ +EYV
Sbjct: 62 IQNLKLFRHPHIIKLYQVISTPTD--FFMVMEYVS 94
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 33.0 bits (76), Expect = 0.36
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK L HP I+ + ++ Y+ +E +E
Sbjct: 69 LKKLNHPCIIKIKNFFDAED---YYIVLELME 97
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 33.1 bits (76), Expect = 0.37
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK L HP I+ + ++ Y+ +E +E
Sbjct: 194 LKKLNHPCIIKIKNFFDAED---YYIVLELME 222
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 33.0 bits (76), Expect = 0.39
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L+ LRH +++ +D + + K +Y+ +EY
Sbjct: 60 LRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCV 91
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 32.9 bits (76), Expect = 0.39
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ L+HP+I+ DS++ S YL + V
Sbjct: 59 CRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 88
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 32.8 bits (75), Expect = 0.45
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
++ LK RHP I+ + +PS +++ +EYV
Sbjct: 67 IQNLKLFRHPHIIKLYQVISTPSD--IFMVMEYVS 99
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 32.6 bits (75), Expect = 0.45
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
+ LK LRHP I+ D + +P+ + + +EY
Sbjct: 60 ISYLKLLRHPHIIKLYDVITTPTD--IVMVIEYA 91
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 32.6 bits (75), Expect = 0.47
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
+ L+ LRHP I+ D ++S + + + +EY
Sbjct: 64 ISYLRLLRHPHIIKLYDVIKSKDE--IIMVIEYA 95
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 32.5 bits (75), Expect = 0.48
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 33/116 (28%)
Query: 109 KKLKTLRHPSILTFLD---SVESPSKSLVYLAVEYVEPIFYH-----LDNTLKENNEKKQ 160
++L+ HP+++ +D + + + V L E+V+ LD +
Sbjct: 66 RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD----QDLRTYLDKAPPPGLPAET 121
Query: 161 I--YISWGIFQITRALSFLINDADLRHNH-VNH----TS-IFINSCGEWKLG--GL 206
I + Q R L FL H + + H I + S G KL GL
Sbjct: 122 IKDL----MRQFLRGLDFL-------HANCIVHRDLKPENILVTSGGTVKLADFGL 166
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 32.2 bits (72), Expect = 0.49
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 16/139 (11%)
Query: 707 GDMESSSNDTTKVGVLDPTS---SQTTERQGGSDGGDGWDLDDWRSLEDTPSPSMPPPLQ 763
G SS + + DP + +Q G + +G+ + + P
Sbjct: 6 GFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPA--GSQGGLAQPGPASGA 63
Query: 764 PSQSWAMSNSLSAMSLQENGLTSPSSDVNSTGGWEDTEWSPIEETEPSIKMEESRKRREE 823
A N + + NG + + +E E K E +++R +
Sbjct: 64 SEDMGATVNG--DVFQEANGPADGYAAIAQAD-------RLTQEPESIRKWREEQRKRLQ 114
Query: 824 KKMA--RQKELEAKRAAKQ 840
+ A + E E + AK+
Sbjct: 115 ELDAASKVMEQEWREKAKK 133
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 32.6 bits (75), Expect = 0.50
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
++ +K+L HP+I+ ++ E + +YL +E
Sbjct: 57 IEIMKSLDHPNIIRLYETFEDNTD--IYLVMELCT 89
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 32.7 bits (75), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ L+HP+I+ DS+ YL + V
Sbjct: 64 CRLLKHPNIVRLHDSISEEGH--HYLIFDLVT 93
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 32.7 bits (75), Expect = 0.54
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ L+HP+I+ DS++ S YL + V
Sbjct: 82 CRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 111
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 32.6 bits (75), Expect = 0.54
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 33/116 (28%)
Query: 109 KKLKTLRHPSILTFLD---SVESPSKSLVYLAVEYVEPIFYH-----LDNTLKENNEKKQ 160
+ L+T HP+++ D + ++ + L E+V+ LD + +
Sbjct: 66 RHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD----QDLTTYLDKVPEPGVPTET 121
Query: 161 I--YISWGIFQITRALSFLINDADLRHNH-VNH----TS-IFINSCGEWKLG--GL 206
I +FQ+ R L FL H+H V H I + S G+ KL GL
Sbjct: 122 IKDM----MFQLLRGLDFL-------HSHRVVHRDLKPQNILVTSSGQIKLADFGL 166
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 32.3 bits (74), Expect = 0.59
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
V+ +K L HP+I+ + +E+ +YL +EY
Sbjct: 65 VRIMKILNHPNIVKLFEVIETEKT--LYLIMEYAS 97
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 32.3 bits (74), Expect = 0.60
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L L HP+I+ + E+P++ + L +E V
Sbjct: 102 LLRLSHPNIIKLKEIFETPTE--ISLVLELVT 131
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K
1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 31.0 bits (71), Expect = 0.66
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQSGGPLKLGAK 850
IE T ++K E++K++E+++ A + K + + + AK
Sbjct: 37 IEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLTVTIPAK 82
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 32.2 bits (74), Expect = 0.72
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L RH +IL +S ES + + + E++
Sbjct: 55 LNIARHRNILHLHESFESMEE--LVMIFEFIS 84
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 31.9 bits (73), Expect = 0.75
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L+HP I+ L++ S +Y+ E+++
Sbjct: 80 CHMLKHPHIVELLETYSSDGM--LYMVFEFMD 109
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 31.8 bits (73), Expect = 0.79
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
++ LK+L HP+I+ + E +Y+ +E E
Sbjct: 71 IEVLKSLDHPNIIKIFEVFEDYHN--MYIVMETCE 103
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 32.0 bits (73), Expect = 0.81
Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 48/230 (20%)
Query: 108 VKKLKTLR-HPSILTFLDSV-----ESPSKSLVYLAVEYVEP--IFYHLDNTLKENN-EK 158
V +K L HP+I+ F + ES + +L + + + L
Sbjct: 76 VCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSC 135
Query: 159 KQIYISWGIF-QITRALSFLINDADLRHNH---VNH-----TSIFINSCGEWKLG--GLE 207
+ IF Q RA+ + H + H ++ +++ G KL G
Sbjct: 136 DTV---LKIFYQTCRAVQHM-------HRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSA 185
Query: 208 YMEKISEASCIPMKRYSRYEDQST------YQIPE--NSLSHVTK-CSTDMYGLGILIWE 258
+R + E++ T Y+ PE + S+ D++ LG +++
Sbjct: 186 TTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYL 245
Query: 259 --VFNGPLQSTNRKSLSN-------IDNIPENLKRVYLELISERPNQRPN 299
P + + + N D + ++ P +R +
Sbjct: 246 LCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLS 295
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I
1vou_I 1vow_I 1voy_I 1vp0_I
Length = 146
Score = 30.6 bits (70), Expect = 0.85
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQSGGPLKLGAK 850
+ T ++K E++ R EK+ A++K + A++ +G ++L +
Sbjct: 36 VSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELSVR 81
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I
2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I
3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 30.6 bits (70), Expect = 0.95
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQSGGPLKLGAK 850
+ TE ++K E+R R + K++A +K + L + +
Sbjct: 37 VLATESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVR 82
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 31.4 bits (72), Expect = 0.98
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
V+ LK L HP+I+ + +E S Y+ E
Sbjct: 72 VELLKKLDHPNIMKLFEILEDSSS--FYIVGELYT 104
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 32.0 bits (72), Expect = 1.0
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 111 LKTLRHPSILTFLDSVESPSK----SLVYLAVEYVE 142
+K L HP++++ + + K L LA+EY E
Sbjct: 66 MKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCE 101
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 31.6 bits (72), Expect = 1.1
Identities = 36/215 (16%), Positives = 71/215 (33%), Gaps = 52/215 (24%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKS-----LVYLAVEYVEP--IFYHL-DNTLKENNEKK 159
V L ++H +IL F+ + + + L+ + E + L N + N E
Sbjct: 69 VYSLPGMKHENILQFIGAEKRGTSVDVDLWLIT---AFHEKGSLSDFLKANVVSWN-ELC 124
Query: 160 QIYISWGIFQITRALSFLINDADLRHNHVN----H-----TSIFINSCGEWKLG--GLEY 208
I + + R L++L D + H ++ + + + GL
Sbjct: 125 HIAET-----MARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA- 178
Query: 209 MEKISEASCIPMKRYSRYEDQST--YQIPE------NSLSHVTKCSTDMYGLGILIWEVF 260
++ + S T Y PE N DMY +G+++WE+
Sbjct: 179 LKFEAGKSAGDTHG-----QVGTRRYMAPEVLEGAINFQRDAFLRI-DMYAMGLVLWELA 232
Query: 261 NGPLQSTNRKSLSNIDNIPENLKRVYLELISERPN 295
+ + D + + E I + P+
Sbjct: 233 SR---------CTAADGPVDEYMLPFEEEIGQHPS 258
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 31.7 bits (72), Expect = 1.1
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ LRHP+++ D+ E ++ + + E++
Sbjct: 208 MSVLRHPTLVNLHDAFEDDNE--MVMIYEFMS 237
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 31.6 bits (72), Expect = 1.2
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ L HP ++ D+ E + + L +E++
Sbjct: 102 MNQLHHPKLINLHDAFEDKYE--MVLILEFLS 131
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 31.7 bits (71), Expect = 1.2
Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 4/101 (3%)
Query: 484 KDDQGGIRTNTTVCVGKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAA---T 540
KD + + + + ++ + + +
Sbjct: 772 KDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSNQTKLQLAFIQHFLSA 831
Query: 541 QQYFLLSEVAQRILPALCQ-LSTDPEKSVRDSAFKTIKGFL 580
+ L E +IL + L + VR A + +
Sbjct: 832 ELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIV 872
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 31.4 bits (72), Expect = 1.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 444 LDTNPTIR-----EQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGI 490
+ TNP +R V+++++ AP L + L+ E+ HFA L + GI
Sbjct: 199 MYTNP-LRVLDSKNPEVQALLNDAPAL-GDYLDEESREHFAGLCKLLESAGI 248
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 31.2 bits (70), Expect = 1.5
Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 46/224 (20%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE----PIFYHLDNTLKENNEKKQIYISWG 166
+ P + + + L + +F LD ++ + +
Sbjct: 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHIL 199
Query: 167 IFQITRALSFLINDADLRH-NHVNHT-----SIFINSCGEWKLGGLEYMEKISEASCIPM 220
Q+ R + L + H ++FI G LG + + K+
Sbjct: 200 TAQLIRLAANL-------QSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT------ 246
Query: 221 KRYSRYEDQSTYQIPENSLSHVTKCS--TDMYGLGILIWEVFNGPL-------------- 264
R TY E + + + + LG+ I+ V+ L
Sbjct: 247 -RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWK 305
Query: 265 ------QSTNRKSLSNIDNIPENLKRVYLELISERPNQRPNPAD 302
T+ + + +P+ +K + ++ +R P +
Sbjct: 306 RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLE 349
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 31.1 bits (71), Expect = 1.5
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 444 LDTNPTIR-----EQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGI 490
L TNP +R ++ I+ APKL + L + HF LQ +
Sbjct: 227 LYTNP-LRVLDTKNPALQEIVRNAPKL-IDFLGDVSRAHFEGLQRLLKANNV 276
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 30.8 bits (70), Expect = 1.6
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 31/133 (23%)
Query: 74 TFWKFHGGKKKGSNEKVTI------FLNDSADTYEPALSYVKK----LKTLRHPSILTFL 123
F K N++V + + + +P L V L + H +I+ L
Sbjct: 36 AFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVL 95
Query: 124 DSVESPSKSLVYLAVEYVEP---IFYHLDN--TLKENNEKKQIYISWGIF-QITRALSFL 177
D E+ L +E +F +D L E IF Q+ A+ +
Sbjct: 96 DIFENQGF--FQLVMEKHGSGLDLFAFIDRHPRLDEPLASY-------IFRQLVSAVGY- 145
Query: 178 INDADLRHNHVNH 190
LR + H
Sbjct: 146 -----LRLKDIIH 153
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 31.2 bits (71), Expect = 1.6
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
+ L H +++ D+ ES + + L +EYV+
Sbjct: 140 MNQLDHANLIQLYDAFESKND--IVLVMEYVD 169
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 31.0 bits (71), Expect = 1.7
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 444 LDTNPTIR-----EQTVKSIIHLAPKLNYNNLNVETLRHFARLQAKDDQGGI 490
L T+P +R K I AP++ + LN E+ ++ +++A D GI
Sbjct: 198 LHTDP-MRILDCKVDRDKEAIKTAPRI-TDFLNEESKAYYEQVKAYLDDLGI 247
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.2 bits (70), Expect = 1.8
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 499 GKIAHHLHPQIRQKVLISAFSRAMRDPFPPARNAGVLALAATQQYFLLSEVAQ----RIL 554
G I H P+ ++ ++D A A+A LS + +++
Sbjct: 44 GNIIEHDVPE----HFFGELAKGIKDKKTAANAMQ--AVAHIANQSNLSPSVEPYIVQLV 97
Query: 555 PALCQLSTDPEKSVRDSAFKTIKGFLGKL 583
PA+C + + +K ++ A +T+ + +
Sbjct: 98 PAICTNAGNKDKEIQSVASETLISIVNAV 126
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 30.2 bits (69), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L+ +RHP+I+T D E+ + V L +E V
Sbjct: 62 LREIRHPNIITLHDIFENKTD--VVLILELVS 91
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 30.7 bits (70), Expect = 2.2
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L+ + H +++T D E+ + V L +E V
Sbjct: 69 LRQVLHHNVITLHDVYENRTD--VVLILELVS 98
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 30.4 bits (69), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L+ + HP+I+T D E+ + V L +E V
Sbjct: 69 LRQVLHPNIITLHDVYENRTD--VVLILELVS 98
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 30.3 bits (69), Expect = 2.4
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
LK ++HP+++T + E+ + V L +E V
Sbjct: 68 LKEIQHPNVITLHEVYENKTD--VILILELVA 97
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 30.4 bits (69), Expect = 3.0
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 82 KKKGSNEKVTIFLNDSADTYEPALSYVKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYV 141
K + + + + +E + + LK+L HP+I+ D E YL E+
Sbjct: 71 KSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKY--FYLVTEFY 128
Query: 142 E 142
E
Sbjct: 129 E 129
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 30.0 bits (68), Expect = 3.1
Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 81/236 (34%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDNTLKENNEKKQIYISW 165
+++L + HP+I+ + +P V L +EY E ++ L +SW
Sbjct: 52 LRQLSRVNHPNIVKLYGACLNP----VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW 107
Query: 166 GIFQITRALSFLINDADLRHNHVNHT---------SIFINSCGEW-KLG--GLEYMEKIS 213
+ Q ++ +++L H+ ++ + + G K+ G
Sbjct: 108 CL-QCSQGVAYL-------HSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT------- 152
Query: 214 EASCIPMKRYSRYEDQS------TYQ--IPE--NSLSHVTKCSTDMYGLGILIWEVFNGP 263
+ + PE ++ KC D++ GI++WEV
Sbjct: 153 ----------ACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKC--DVFSWGIILWEVI--- 197
Query: 264 LQSTNRKSLSNIDN----------------IPENLKRVYLELI----SERPNQRPN 299
T RK I + +NL + L+ S+ P+QRP+
Sbjct: 198 ---TRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPS 250
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 29.9 bits (67), Expect = 3.9
Identities = 26/246 (10%), Positives = 71/246 (28%), Gaps = 29/246 (11%)
Query: 500 KIAHHLHPQIRQKVLISAFSRAMRDPFPPAR----NAGVLALAATQQYFLLSEVAQRILP 555
++ H +++ + + + G L + A + + +P
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 460
Query: 556 ALCQLSTDPEKSVRDSAFKTIKGFLGKLEQVSENPSLRESMEAD---------VHTATPS 606
QL P ++++ A G L +++++ E++EA+ +H+
Sbjct: 461 LFVQLLYSPIENIQRVA-------AGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 513
Query: 607 LSNAAATWADWAVTAVTSKFYRSQSETLKTSRGPTRP---SGRFLSKPASLEASSASSMS 663
++ AA + ++ + Q + S T + + +
Sbjct: 514 VATYAA----AVLFRMSED--KPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQG 567
Query: 664 TTTTASSVASLASSLEHEGEGGSASKGESMSDYDETPWESETWGDMESSSNDTTKVGVLD 723
S G G A + M +++ ++ + ++D
Sbjct: 568 EPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGGHHPGADYPVDGLPDLGHAQDLMD 627
Query: 724 PTSSQT 729
Sbjct: 628 GLPPGD 633
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 29.9 bits (68), Expect = 4.0
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 39/121 (32%)
Query: 108 VKKLKTLRHPSILTFLD------SVESPSKSLVYLAVEYVEPIFYH-----LDN---TLK 153
+K L+ L+H +++ ++ S + K +YL ++ E H L N
Sbjct: 67 IKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE----HDLAGLLSNVLVKFT 122
Query: 154 ENNEKKQIYISWGIFQITRALSFLINDADLRH-NHVNH----TS-IFINSCGEWKLG--G 205
+ K+ + + L ++ H N + H + + I G KL G
Sbjct: 123 LSEIKRVMQ------MLLNGLYYI-------HRNKILHRDMKAANVLITRDGVLKLADFG 169
Query: 206 L 206
L
Sbjct: 170 L 170
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F
1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H
2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H
2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 28.7 bits (65), Expect = 4.0
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQSG-GPLKLGAK 850
+ T+ +I+ E+R+ E K+A RA K + + + +K
Sbjct: 37 VPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASK 83
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 29.6 bits (67), Expect = 4.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
K L+H +I+ +L S +++ E V
Sbjct: 73 HKHLKHKNIVQYLGSFSENGFIKIFM--EQVP 102
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 29.4 bits (66), Expect = 4.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
V+ +K L HP+I + E + L +E
Sbjct: 79 VRLMKKLHHPNIARLYEVYEDEQY--ICLVMELCH 111
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 29.3 bits (66), Expect = 5.0
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVE 142
L P I+ +V V + +E +E
Sbjct: 104 CAGLSSPRIVPLYGAVREGPW--VNIFMELLE 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 29.8 bits (67), Expect = 5.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 114 LRHPSILTFLDSVESPSKS---LVYLAVEYVE 142
+ HPSI+ + VE + + Y+ +EYV
Sbjct: 136 VVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVG 167
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
structure initiati midwest center for structural
genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Length = 382
Score = 29.6 bits (67), Expect = 5.4
Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 289 LISE-RPNQRPNPADFIMRNR 308
ISE P DF RNR
Sbjct: 211 AISEMPLGHVPRGKDFPRRNR 231
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 29.2 bits (66), Expect = 5.7
Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 71/232 (30%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAVEYVE--PIFYHLDNTLKENNEKKQIYISW 165
V +K LRHP+I+ F+ +V P + + EY+ ++ L + ++ +S
Sbjct: 85 VAIMKRLRHPNIVLFMGAVTQPPN--LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSM 142
Query: 166 GIFQITRALSFLINDADLRHNHVNHTSI----------FINSCGEWKLG--GLEYMEKIS 213
+ + +++L H + I ++ K+ GL
Sbjct: 143 AY-DVAKGMNYL---------HNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGL------- 185
Query: 214 EASCIPMKRYSRYEDQSTYQI-----------PE--NSLSHVTKCSTDMYGLGILIWEVF 260
SR + + PE K D+Y G+++WE+
Sbjct: 186 ----------SRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKS--DVYSFGVILWELA 233
Query: 261 NG--------PLQ-----STNRKSLSNIDNIPENLKRVYLELISERPNQRPN 299
P Q K L N+ + + + P +RP+
Sbjct: 234 TLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPS 285
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 5.9
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 27/53 (50%)
Query: 15 KNKVKNIDDDKALTSEVVDIRLSSSPKMWAFFGRDASKDFAYEVGEPAVSFSG 67
K +K +L +S K++A D A PA++
Sbjct: 19 KQALK---------------KLQASLKLYA-------DDSA-----PALAIKA 44
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 197
Score = 28.5 bits (64), Expect = 6.3
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 805 IEETEPSIKMEESRKRREEKKMARQKELEAKRAAKQ--SGGPLKLGAK 850
T +K + R E + R KE EA++ A + G K+ K
Sbjct: 86 QLMTPLLLKELKMEDERIEAEKQRVKE-EAQQLAMVFQTVGAFKVKRK 132
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 28.9 bits (65), Expect = 6.5
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 44/183 (24%)
Query: 108 VKKLKTLRHPSILTFLDSVESPSKSLVYLAV--EYVEPIFYH--LDNTLKENNEKKQIYI 163
+ + +RH +IL F+ + + S L + +Y E + L + LK + +
Sbjct: 82 IYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHE----NGSLYDYLKSTTLDAKSML 137
Query: 164 SWGIFQITRALSFL--INDADLRHNHVNH-----TSIFINSCGEWKLG--GLEYMEKISE 214
L L + + H +I + G + GL
Sbjct: 138 KLAY-SSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL-------- 188
Query: 215 ASCIPMKRYSRYEDQSTYQI-------PE--------NSLSHVTKCSTDMYGLGILIWEV 259
+ + + + ++ PE N DMY G+++WEV
Sbjct: 189 -AVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMA--DMYSFGLILWEV 245
Query: 260 FNG 262
Sbjct: 246 ARR 248
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 28.6 bits (63), Expect = 7.2
Identities = 5/38 (13%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 807 ETEPSIKMEES----RKRREEKKMARQKELEAKRAAKQ 840
+ + E R+R E +++++ A++
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAA 40
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 28.9 bits (65), Expect = 8.2
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYH--LDNTLKEN----NEKKQIYIS 164
LK+L+H +I+ + S + + L +EY+ + L + L+++ + K + +
Sbjct: 96 LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP----YGSLRDYLQKHKERIDHIKLLQYT 151
Query: 165 WGIFQITRALSFL 177
QI + + +L
Sbjct: 152 S---QICKGMEYL 161
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 28.4 bits (64), Expect = 8.6
Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 47/244 (19%)
Query: 389 HEDYQAKIVPCVVKLFGSNDRATRSRLLLQLEHFIGHVPDAIVNEQIFQQVALGFL---- 444
H + +P + + S+D + + + + I + + AL L
Sbjct: 6 HHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQI--QAVIDAGALPALVQLL 63
Query: 445 -DTNPTIREQTVKSIIHLAPKLNYNNLNVET------LRHFARLQAKDDQGGIRTNTTVC 497
N I ++ + ++ ++A + N ++ L +L I
Sbjct: 64 SSPNEQILQEALWALSNIA---SGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWA 119
Query: 498 VGKIAHHLHPQIRQKVL----ISAFSRAMRDPFPPARNAGVLALA-----ATQQYFLLSE 548
+ IA + Q V+ + A + + P + AL+ +Q +
Sbjct: 120 LSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-- 176
Query: 549 VAQRILPALCQLSTDPEKSVRDSAFKTIK----------------GFLGKLEQV--SENP 590
+ LPAL QL + P + + A + G L KLEQ+ EN
Sbjct: 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236
Query: 591 SLRE 594
+++
Sbjct: 237 KIQK 240
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Length = 99
Score = 27.3 bits (60), Expect = 8.6
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 542 QYFLLSEVAQRILPALCQLSTDPEKSVRD---SAFKTIKGFLGKLEQVSENPS 591
Y L + + L + + T+ + ++ A + + L +LEQ + PS
Sbjct: 45 NYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNASGPS 97
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 28.4 bits (64), Expect = 9.3
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 111 LKTLRHPSILTFLDSVESPSKSLVYLAVEYVEPIFYH--LDNTLKEN----NEKKQIYIS 164
LK+L+H +I+ + S + + L +EY+ + L + L+++ + K + +
Sbjct: 65 LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP----YGSLRDYLQKHKERIDHIKLLQYT 120
Query: 165 WGIFQITRALSFL 177
QI + + +L
Sbjct: 121 S---QICKGMEYL 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,415,083
Number of extensions: 731105
Number of successful extensions: 1454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 165
Length of query: 852
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 750
Effective length of database: 3,853,851
Effective search space: 2890388250
Effective search space used: 2890388250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.8 bits)