Query psy3916
Match_columns 103
No_of_seqs 113 out of 1014
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:40:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 99.9 3.9E-28 8.6E-33 180.2 4.7 93 1-95 53-150 (663)
2 KOG0102|consensus 99.9 4.6E-23 1E-27 156.5 6.0 96 1-96 44-139 (640)
3 PTZ00400 DnaK-type molecular c 99.8 5.2E-21 1.1E-25 150.5 10.0 95 1-95 58-152 (663)
4 PRK13410 molecular chaperone D 99.8 7.2E-20 1.6E-24 144.1 10.7 92 1-94 19-112 (668)
5 PRK00290 dnaK molecular chaper 99.8 7.5E-20 1.6E-24 143.1 10.7 93 1-95 19-111 (627)
6 PRK13411 molecular chaperone D 99.8 3.4E-19 7.3E-24 140.1 9.5 93 1-95 19-111 (653)
7 PTZ00186 heat shock 70 kDa pre 99.8 5.4E-19 1.2E-23 139.0 9.1 94 1-95 44-138 (657)
8 PTZ00009 heat shock 70 kDa pro 99.8 5.7E-19 1.2E-23 138.8 9.1 94 1-95 21-118 (653)
9 PLN03184 chloroplast Hsp70; Pr 99.8 1.3E-18 2.8E-23 137.2 9.1 93 1-95 56-150 (673)
10 TIGR02350 prok_dnaK chaperone 99.8 3.7E-18 8E-23 132.8 9.3 92 1-95 17-108 (595)
11 TIGR01991 HscA Fe-S protein as 99.8 3.7E-18 8.1E-23 133.1 9.1 92 1-95 16-107 (599)
12 CHL00094 dnaK heat shock prote 99.7 5.7E-18 1.2E-22 132.5 9.1 93 1-95 19-113 (621)
13 KOG0101|consensus 99.7 2.3E-18 5E-23 133.4 6.4 94 1-95 24-121 (620)
14 PRK05183 hscA chaperone protei 99.7 4.1E-17 9E-22 127.6 8.7 92 1-95 36-127 (616)
15 KOG0103|consensus 99.7 3.2E-18 6.9E-23 132.9 2.1 94 2-96 19-116 (727)
16 PF00012 HSP70: Hsp70 protein; 99.7 4.3E-17 9.4E-22 126.1 7.6 94 1-95 16-113 (602)
17 KOG0104|consensus 99.4 3E-13 6.4E-18 106.5 5.8 90 5-95 44-136 (902)
18 COG0443 DnaK Molecular chapero 99.3 1.3E-12 2.8E-17 102.0 5.7 58 1-58 22-80 (579)
19 PRK01433 hscA chaperone protei 99.3 2.7E-12 5.9E-17 100.4 6.3 84 1-95 36-119 (595)
20 PRK11678 putative chaperone; P 98.7 1.5E-08 3.3E-13 77.3 4.1 58 1-58 17-116 (450)
21 PRK13929 rod-share determining 94.9 0.04 8.7E-07 40.5 3.9 33 18-50 29-63 (335)
22 PRK13927 rod shape-determining 83.6 1.6 3.6E-05 31.7 3.6 32 17-48 29-62 (334)
23 TIGR00904 mreB cell shape dete 82.6 1.8 3.9E-05 31.6 3.4 38 17-56 26-69 (333)
24 PRK13928 rod shape-determining 80.2 3.1 6.7E-05 30.5 4.0 33 17-49 27-61 (336)
25 PRK13930 rod shape-determining 78.5 3.1 6.8E-05 30.2 3.6 30 18-47 33-64 (335)
26 PF03484 B5: tRNA synthetase B 78.1 3.4 7.3E-05 23.5 2.9 40 48-87 8-47 (70)
27 PF09154 DUF1939: Domain of un 71.5 2.4 5.2E-05 23.5 1.1 40 54-93 15-54 (57)
28 COG1077 MreB Actin-like ATPase 66.6 7.4 0.00016 29.2 3.1 32 17-48 30-65 (342)
29 smart00874 B5 tRNA synthetase 65.4 9.7 0.00021 21.3 2.9 40 48-87 8-48 (71)
30 PF06723 MreB_Mbl: MreB/Mbl pr 64.4 5.5 0.00012 29.6 2.1 30 17-46 25-56 (326)
31 PF08127 Propeptide_C1: Peptid 50.7 10 0.00022 19.5 1.1 19 43-61 22-40 (41)
32 PF13101 DUF3945: Protein of u 49.2 24 0.00051 19.4 2.6 50 17-75 2-51 (59)
33 KOG1004|consensus 46.6 34 0.00073 24.2 3.5 37 49-87 156-192 (230)
34 cd04476 RPA1_DBD_C RPA1_DBD_C: 43.2 8.3 0.00018 25.4 0.1 25 20-44 82-106 (166)
35 PRK04163 exosome complex RNA-b 39.9 33 0.00071 24.2 2.7 38 49-88 154-191 (235)
36 COG1097 RRP4 RNA-binding prote 38.0 33 0.00071 24.6 2.4 39 49-89 155-193 (239)
37 KOG0855|consensus 32.9 29 0.00062 23.9 1.4 26 54-79 127-155 (211)
38 COG3811 Uncharacterized protei 31.6 96 0.0021 18.4 3.3 57 2-77 16-72 (85)
39 PF14097 SpoVAE: Stage V sporu 28.6 82 0.0018 21.6 3.0 29 18-46 53-83 (180)
40 COG0072 PheT Phenylalanyl-tRNA 26.9 73 0.0016 26.0 3.0 34 48-81 271-304 (650)
41 PF13464 DUF4115: Domain of un 26.7 1.1E+02 0.0024 17.3 3.1 25 70-94 37-61 (77)
42 PF13098 Thioredoxin_2: Thiore 26.3 59 0.0013 19.2 2.0 26 14-39 79-107 (112)
43 COG4813 ThuA Trehalose utiliza 25.5 31 0.00068 24.2 0.6 18 43-60 100-117 (261)
44 PRK14645 hypothetical protein; 25.4 89 0.0019 20.7 2.8 45 44-91 90-134 (154)
45 PF01436 NHL: NHL repeat; Int 24.8 84 0.0018 14.2 2.1 17 18-34 3-19 (28)
46 PF12101 DUF3577: Protein of u 24.4 2.1E+02 0.0046 18.7 4.5 46 14-62 44-89 (137)
47 PF15533 Toxin_54: Putative to 23.4 1.5E+02 0.0033 16.9 3.0 35 44-89 19-53 (66)
48 COG0779 Uncharacterized protei 22.8 1.5E+02 0.0032 19.7 3.4 48 44-91 87-136 (153)
49 PF13322 DUF4092: Domain of un 22.3 1E+02 0.0022 20.9 2.6 29 70-102 134-164 (172)
50 PF11343 DUF3145: Protein of u 22.2 64 0.0014 21.6 1.6 58 5-62 68-139 (158)
51 COG1427 Predicted periplasmic 21.9 98 0.0021 22.4 2.6 32 27-58 132-167 (252)
No 1
>KOG0100|consensus
Probab=99.94 E-value=3.9e-28 Score=180.17 Aligned_cols=93 Identities=40% Similarity=0.705 Sum_probs=84.3
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|+||.++||+|++|+|.|||+|+|+++ ++|+|++|++|+..||+|||++.||||||+|+|+.||.++++|||+++. .+
T Consensus 53 ~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~-k~ 130 (663)
T KOG0100|consen 53 YKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVN-KD 130 (663)
T ss_pred EeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEc-CC
Confidence 579999999999999999999999965 9999999999999999999999999999999999999999999999994 45
Q ss_pred CCEEEEe--C-C--eEEcce
Q psy3916 81 GDAWVQG--K-N--IRISEV 95 (103)
Q Consensus 81 g~~~~~~--~-g--~~~sp~ 95 (103)
+++.+++ . | +.|+|+
T Consensus 131 ~kp~i~v~v~~g~~K~FtPe 150 (663)
T KOG0100|consen 131 GKPYIQVKVGGGETKVFTPE 150 (663)
T ss_pred CCccEEEEccCCcccccCHH
Confidence 6666664 3 3 688886
No 2
>KOG0102|consensus
Probab=99.88 E-value=4.6e-23 Score=156.47 Aligned_cols=96 Identities=72% Similarity=1.122 Sum_probs=92.9
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|+++++.++.|..|.|+|||+|+|+.++++|+|..|+.++..||.|+++..||||||+|+|+.+|++++..||++++..|
T Consensus 44 meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~n 123 (640)
T KOG0102|consen 44 MEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASN 123 (640)
T ss_pred EeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccC
Confidence 57899999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCeEEccee
Q psy3916 81 GDAWVQGKNIRISEVV 96 (103)
Q Consensus 81 g~~~~~~~g~~~sp~~ 96 (103)
|++|++..|++|+|+.
T Consensus 124 gdaw~e~~G~~~spsq 139 (640)
T KOG0102|consen 124 GDAWVEARGKQYSPSQ 139 (640)
T ss_pred CcEEEEeCCeEecHHH
Confidence 9999999999999985
No 3
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.85 E-value=5.2e-21 Score=150.46 Aligned_cols=95 Identities=67% Similarity=0.981 Sum_probs=88.7
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|+++||+|++|+|+|||+|+|++++++++|..|++++.++|.++++++|||||++++|+.++...+.|||+++.+.+
T Consensus 58 ~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~ 137 (663)
T PTZ00400 58 MEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASN 137 (663)
T ss_pred EeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCC
Confidence 46789999999999999999999986679999999999999999999999999999999999999888899999998889
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.+.++|+.|+|+
T Consensus 138 ~~~~~~~~~~~~spe 152 (663)
T PTZ00400 138 GDAWIEAQGKKYSPS 152 (663)
T ss_pred CceEEEECCEEECHH
Confidence 999999999999886
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.82 E-value=7.2e-20 Score=144.13 Aligned_cols=92 Identities=50% Similarity=0.772 Sum_probs=81.4
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++|+|+.|+|+|||+|+|+.++++++|..|++++..+|.|+++++|||||+++.| ++...+.+||++..+.+
T Consensus 19 ~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~ 96 (668)
T PRK13410 19 MEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQ 96 (668)
T ss_pred EECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCC
Confidence 4678999999999999999999998667999999999999999999999999999999977 55566789999998888
Q ss_pred CCEEEEe--CCeEEcc
Q psy3916 81 GDAWVQG--KNIRISE 94 (103)
Q Consensus 81 g~~~~~~--~g~~~sp 94 (103)
|.+.+.+ .++.|+|
T Consensus 97 g~~~i~~~~~~~~~sp 112 (668)
T PRK13410 97 GNVRIKCPRLEREFAP 112 (668)
T ss_pred CcEEEEEecCCeEEcH
Confidence 9888876 3567777
No 5
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.82 E-value=7.5e-20 Score=143.08 Aligned_cols=93 Identities=65% Similarity=0.997 Sum_probs=84.5
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++++|++|+|.|||+|+|..++++++|+.|++++.++|.++++++|||||++ ++.++...+.|||+++.+.+
T Consensus 19 ~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~ 96 (627)
T PRK00290 19 MEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADN 96 (627)
T ss_pred EECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCC
Confidence 4578999999999999999999997667999999999999999999999999999999 56688778899999998888
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|...+.++|+.|+|+
T Consensus 97 ~~~~~~~~~~~~~pe 111 (627)
T PRK00290 97 GDAWVEIDGKKYTPQ 111 (627)
T ss_pred CceEEEECCEEEcHH
Confidence 988898989888885
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=3.4e-19 Score=140.07 Aligned_cols=93 Identities=47% Similarity=0.725 Sum_probs=83.6
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++.+|+|++|+|+|||+|+|.+++++++|..|++++.++|.++++++|||||++++|+. ...+.+||+++.+.+
T Consensus 19 ~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~ 96 (653)
T PRK13411 19 LEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRD 96 (653)
T ss_pred EECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCC
Confidence 467899999999999999999999866799999999999999999999999999999999864 345789999998888
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.+.+.|+.|+|+
T Consensus 97 ~~~~~~i~~~~~~pe 111 (653)
T PRK13411 97 DTVNVQIRGRNYTPQ 111 (653)
T ss_pred CceEEEECCEEECHH
Confidence 988888888888875
No 7
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.79 E-value=5.4e-19 Score=138.99 Aligned_cols=94 Identities=64% Similarity=0.993 Sum_probs=85.2
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|+++++++++|..|+|+|||+|+|+ ++++++|..|++++..+|.++++++||+||++++|+.++...+.|||+++.+.+
T Consensus 44 ~~~~~~~ii~n~~g~r~tPS~V~f~-~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~ 122 (657)
T PTZ00186 44 MDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN 122 (657)
T ss_pred EeCCceEEeecCCCCcccceEEEEC-CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCC
Confidence 4678899999999999999999998 468899999999999999999999999999999999999988999999998888
Q ss_pred CCEEEEe-CCeEEcce
Q psy3916 81 GDAWVQG-KNIRISEV 95 (103)
Q Consensus 81 g~~~~~~-~g~~~sp~ 95 (103)
+.+.+.. +|+.|+|+
T Consensus 123 ~~~~i~~~~~~~~spe 138 (657)
T PTZ00186 123 GDAWVQDGNGKQYSPS 138 (657)
T ss_pred CceEEEeCCCeEEcHH
Confidence 8888775 46788875
No 8
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.78 E-value=5.7e-19 Score=138.77 Aligned_cols=94 Identities=37% Similarity=0.654 Sum_probs=83.0
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|+++||+|++|+|+|||+|+|. ++++++|++|++++.++|.++++++|||||++|+|+.++...+.|||+++.+.+
T Consensus 21 ~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~ 99 (653)
T PTZ00009 21 WKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGD 99 (653)
T ss_pred EeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCC
Confidence 4578999999999999999999998 468999999999999999999999999999999999999888899999988777
Q ss_pred CCEEEEe--CC--eEEcce
Q psy3916 81 GDAWVQG--KN--IRISEV 95 (103)
Q Consensus 81 g~~~~~~--~g--~~~sp~ 95 (103)
|...+.+ +| +.|+|+
T Consensus 100 ~~~~~~v~~~~~~~~~~pe 118 (653)
T PTZ00009 100 DKPMIEVTYQGEKKTFHPE 118 (653)
T ss_pred CceEEEEEeCCceEEECHH
Confidence 8776654 34 567664
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.77 E-value=1.3e-18 Score=137.20 Aligned_cols=93 Identities=45% Similarity=0.795 Sum_probs=82.1
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|+++||+|++|+|+|||+|+|.+++++++|..|++++.++|.|+++++|||||++++| ++...+.|||+++.+.+
T Consensus 56 ~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~ 133 (673)
T PLN03184 56 MEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDEN 133 (673)
T ss_pred EECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCC
Confidence 4678999999999999999999998667899999999999999999999999999999987 55556789999998888
Q ss_pred CCEEEEe--CCeEEcce
Q psy3916 81 GDAWVQG--KNIRISEV 95 (103)
Q Consensus 81 g~~~~~~--~g~~~sp~ 95 (103)
|.+.+.+ .|+.|+|+
T Consensus 134 ~~v~~~~~~~~~~~spe 150 (673)
T PLN03184 134 GNVKLDCPAIGKQFAAE 150 (673)
T ss_pred CcEEEEEecCCeEEcHH
Confidence 9888875 46778774
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.76 E-value=3.7e-18 Score=132.80 Aligned_cols=92 Identities=54% Similarity=0.853 Sum_probs=82.2
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++++|++|+|.|||+|+|.+++++++|..|++++.++|.++++++|||||+++++ ++...+.+||+ +...+
T Consensus 17 ~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~--~~~~~~~~~~~-v~~~~ 93 (595)
T TIGR02350 17 MEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDE--VTEEAKRVPYK-VVGDG 93 (595)
T ss_pred EECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchH--HHHHhhcCCee-EEcCC
Confidence 4678999999999999999999998667999999999999999999999999999999954 66667889999 45678
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.+.++|+.|+|+
T Consensus 94 ~~~~~~v~~~~~~pe 108 (595)
T TIGR02350 94 GDVRVKVDGKEYTPQ 108 (595)
T ss_pred CceEEEECCEEecHH
Confidence 899999999988886
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.75 E-value=3.7e-18 Score=133.11 Aligned_cols=92 Identities=29% Similarity=0.425 Sum_probs=80.8
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++|+|.+|++.|||+|+|.+++++++|..|++++.++|.++++++|||||+++.|. +. .+.+||+++...+
T Consensus 16 ~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~--~~-~~~~~~~~~~~~~ 92 (599)
T TIGR01991 16 VRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDI--KT-FSILPYRFVDGPG 92 (599)
T ss_pred EECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccch--hh-cccCCEEEEEcCC
Confidence 46789999999999999999999986679999999999999999999999999999999884 33 5679999988888
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.+++.+..|+|+
T Consensus 93 ~~~~~~~~~~~~~p~ 107 (599)
T TIGR01991 93 EMVRLRTVQGTVTPV 107 (599)
T ss_pred CceEEEeCCCEEcHH
Confidence 888888766667664
No 12
>CHL00094 dnaK heat shock protein 70
Probab=99.75 E-value=5.7e-18 Score=132.49 Aligned_cols=93 Identities=51% Similarity=0.772 Sum_probs=81.4
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|+++||+|++|+|++||+|+|.+++++++|+.|++++..+|.++++++||+||++++| ++...+.|||+++.+.+
T Consensus 19 ~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~ 96 (621)
T CHL00094 19 MEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSN 96 (621)
T ss_pred EECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCC
Confidence 4678999999999999999999998667899999999999999999999999999999976 55556789999998888
Q ss_pred CCEEEEe--CCeEEcce
Q psy3916 81 GDAWVQG--KNIRISEV 95 (103)
Q Consensus 81 g~~~~~~--~g~~~sp~ 95 (103)
|.+.+.+ .++.|+|+
T Consensus 97 g~i~~~~~~~~~~~s~e 113 (621)
T CHL00094 97 GNIKIECPALNKDFSPE 113 (621)
T ss_pred CCEEEEEecCCeEEcHH
Confidence 8888865 46677765
No 13
>KOG0101|consensus
Probab=99.74 E-value=2.3e-18 Score=133.42 Aligned_cols=94 Identities=43% Similarity=0.691 Sum_probs=83.4
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|.+++++++.|++|+|+|||+|+|++ .++++|.+|+++...+|.|+++++||||||.|+|+.++.++++|||++..+.+
T Consensus 24 ~~~~~v~iian~~g~rttPs~vaf~~-~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~ 102 (620)
T KOG0101|consen 24 YQSGKVEIIANDQGNRTTPSVVAFTD-TERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQG 102 (620)
T ss_pred EcCCcceeeeccccCccccceeeecc-cccchhhhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccC
Confidence 45789999999999999999999995 49999999999999999999999999999999999999999999999985556
Q ss_pred CCEEEEe--CC--eEEcce
Q psy3916 81 GDAWVQG--KN--IRISEV 95 (103)
Q Consensus 81 g~~~~~~--~g--~~~sp~ 95 (103)
+.+.+++ .| +.|+|+
T Consensus 103 ~~~~i~~~~~~~~~~f~pe 121 (620)
T KOG0101|consen 103 GKPKIQVTYKGETKSFNPE 121 (620)
T ss_pred CcceEEecccccceeeeee
Confidence 6666664 33 678875
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.71 E-value=4.1e-17 Score=127.64 Aligned_cols=92 Identities=32% Similarity=0.464 Sum_probs=79.2
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++|+|.+|++.+||+|+|+++ ++++|..|++++..+|.++++++|||||++++| ++...+.+||++....+
T Consensus 36 ~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~ 112 (616)
T PRK05183 36 VRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASEN 112 (616)
T ss_pred EECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCC
Confidence 467899999999999999999999854 699999999999999999999999999999987 44445779999987778
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.+++.+..|+|+
T Consensus 113 g~~~~~~~~~~~~p~ 127 (616)
T PRK05183 113 GMPLIRTAQGLKSPV 127 (616)
T ss_pred CceEEEecCCeEcHH
Confidence 888887765566654
No 15
>KOG0103|consensus
Probab=99.70 E-value=3.2e-18 Score=132.88 Aligned_cols=94 Identities=32% Similarity=0.549 Sum_probs=86.0
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCC
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG 81 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g 81 (103)
+.+.+++|.|+.++|.||++|+|.+ ..+++|.+|+++..+|+.|++..+|||+||.|+||.+|.+.+.+||.++++.+|
T Consensus 19 r~~gIe~i~nd~Snr~TPa~vsfg~-K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg 97 (727)
T KOG0103|consen 19 RQGGIEVVANDYSNRETPAIVSFGP-KNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDG 97 (727)
T ss_pred ccCCceeeeeccccccCcceeeecc-ccceeeeccccceeecccccchhhhhhhccccCChHhhhcccccchheeecCCC
Confidence 4577999999999999999999985 599999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeC--C--eEEccee
Q psy3916 82 DAWVQGK--N--IRISEVV 96 (103)
Q Consensus 82 ~~~~~~~--g--~~~sp~~ 96 (103)
.+.++++ | +.|+|+.
T Consensus 98 ~vgi~v~ylge~~~ft~~Q 116 (727)
T KOG0103|consen 98 DVGIKVEYLGEKHPFTPEQ 116 (727)
T ss_pred CcceeehcccCCCCCChHH
Confidence 9999864 4 5677754
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.70 E-value=4.3e-17 Score=126.08 Aligned_cols=94 Identities=41% Similarity=0.732 Sum_probs=82.0
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|+++++++|.|+.|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++++.++...+.+||+++.+.+
T Consensus 16 ~~~~~~~ii~~~~~~~~~ps~v~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~ 94 (602)
T PF00012_consen 16 FKNGKPEIILNEEGKRKTPSVVSFSD-NERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPD 94 (602)
T ss_dssp EETTEEEEE--TTS-SSEESEEEEES-SCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETT
T ss_pred EEeccccccccccccccccceeeEee-ecccCCcchhhhcccccccccccccccccccccccccchhhhccccccccccc
Confidence 35789999999999999999999995 59999999999999999999999999999999999999888899999998888
Q ss_pred CCEEEEeC--Ce--EEcce
Q psy3916 81 GDAWVQGK--NI--RISEV 95 (103)
Q Consensus 81 g~~~~~~~--g~--~~sp~ 95 (103)
|.+.+++. |+ .|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~ 113 (602)
T PF00012_consen 95 GKVYFEVDYDGKSKTYSPE 113 (602)
T ss_dssp TEEEEEEEETTEEEEEEHH
T ss_pred ccccccccccccceeeeee
Confidence 98888864 64 78775
No 17
>KOG0104|consensus
Probab=99.41 E-value=3e-13 Score=106.46 Aligned_cols=90 Identities=28% Similarity=0.451 Sum_probs=81.8
Q ss_pred eeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccc-eeEEEcC-CCC
Q psy3916 5 QAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLS-YKIVRAS-NGD 82 (103)
Q Consensus 5 ~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p-~~i~~~~-~g~ 82 (103)
.++|+.|+.++|++||+|+|. +|+|++|++|.++++++|.+++..+|.|+|++.+|+.++.+.+.+| |+++.+. ++.
T Consensus 44 PmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rst 122 (902)
T KOG0104|consen 44 PMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRST 122 (902)
T ss_pred CeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccce
Confidence 578999999999999999997 6799999999999999999999999999999999999988877776 5788774 999
Q ss_pred EEEEeCC-eEEcce
Q psy3916 83 AWVQGKN-IRISEV 95 (103)
Q Consensus 83 ~~~~~~g-~~~sp~ 95 (103)
+.|.+++ ..|+++
T Consensus 123 V~F~i~d~~~ysvE 136 (902)
T KOG0104|consen 123 VVFKISDQEEYSVE 136 (902)
T ss_pred EEEEeCCccccCHH
Confidence 9999987 888876
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-12 Score=101.95 Aligned_cols=58 Identities=62% Similarity=0.892 Sum_probs=54.0
Q ss_pred CCCC-eeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhccc
Q psy3916 1 MEGK-QAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRR 58 (103)
Q Consensus 1 ~~~~-~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~ 58 (103)
|+++ .++++.|..|+|+|||+|+|++++++++|..|++++..+|.|+++.+||+||++
T Consensus 22 ~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 22 MRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred EeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence 4556 799999999999999999998776899999999999999999999999999986
No 19
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.32 E-value=2.7e-12 Score=100.43 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=57.9
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|.+|+++||+|++|+++|||+|+|++ +++++|..| +++++|||||++++|...+..............+
T Consensus 36 ~~~~~~~ii~n~~g~~~tPS~V~f~~-~~~~vG~~A----------ti~~~KrliG~~~~~~~~~~~~~~~~k~~~~~~~ 104 (595)
T PRK01433 36 ATNRKVKVIKSIDDKELIPTTIDFTS-NNFTIGNNK----------GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNS 104 (595)
T ss_pred EeCCeeEEEECCCCCeecCeEEEEcC-CCEEECchh----------hHHHHHHHhCCCchhhccchhhHhhhhheeecCC
Confidence 46789999999999999999999984 579999987 7999999999999863211110001111122234
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
+.+.+.+.++.|+|+
T Consensus 105 ~~~~~~~~~~~~spe 119 (595)
T PRK01433 105 SELKLNFANKQLRIP 119 (595)
T ss_pred CeeEEEECCEEEcHH
Confidence 455566666666664
No 20
>PRK11678 putative chaperone; Provisional
Probab=98.70 E-value=1.5e-08 Score=77.26 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEe----------------------------------------cCCceeeCHHHHHHH
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFT----------------------------------------KDGERLVGTPARRQA 40 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~----------------------------------------~~~~~~vG~~A~~~~ 40 (103)
|++|++++|++++|++.+||+|+|. ++++.++|..|+++.
T Consensus 17 ~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~A~~~~ 96 (450)
T PRK11678 17 MRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDVTAQSVFFGLAALAQY 96 (450)
T ss_pred eeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccccccccchhHHHHHhh
Confidence 5688999999999999999999994 245789999999999
Q ss_pred hhCCCcc--hhhhhhhhccc
Q psy3916 41 VTNSANT--FYATKRLIGRR 58 (103)
Q Consensus 41 ~~~p~n~--i~~~KrliG~~ 58 (103)
..+|.++ +.++||+||..
T Consensus 97 ~~~p~~~r~i~s~Kr~lg~~ 116 (450)
T PRK11678 97 LEDPEEVYFVKSPKSFLGAS 116 (450)
T ss_pred ccCCCCceEEecchhhhccC
Confidence 9999999 77999999965
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=94.86 E-value=0.04 Score=40.53 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=27.4
Q ss_pred cceEEEEecCCc--eeeCHHHHHHHhhCCCcchhh
Q psy3916 18 TPSVVAFTKDGE--RLVGTPARRQAVTNSANTFYA 50 (103)
Q Consensus 18 ~pS~V~f~~~~~--~~vG~~A~~~~~~~p~n~i~~ 50 (103)
.||+|+|+.++. .++|++|+++..+.|.++...
T Consensus 29 ~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~ 63 (335)
T PRK13929 29 EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV 63 (335)
T ss_pred CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE
Confidence 599999985433 579999999999999887774
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=83.62 E-value=1.6 Score=31.74 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=24.9
Q ss_pred ccceEEEEecC-Cc-eeeCHHHHHHHhhCCCcch
Q psy3916 17 TTPSVVAFTKD-GE-RLVGTPARRQAVTNSANTF 48 (103)
Q Consensus 17 ~~pS~V~f~~~-~~-~~vG~~A~~~~~~~p~n~i 48 (103)
.+||+|+|.++ ++ .++|+.|+++..+.|.++.
T Consensus 29 ~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~ 62 (334)
T PRK13927 29 NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIV 62 (334)
T ss_pred ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEE
Confidence 49999999754 33 4899999999877776644
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=82.56 E-value=1.8 Score=31.64 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=27.4
Q ss_pred ccceEEEEecC----Cc--eeeCHHHHHHHhhCCCcchhhhhhhhc
Q psy3916 17 TTPSVVAFTKD----GE--RLVGTPARRQAVTNSANTFYATKRLIG 56 (103)
Q Consensus 17 ~~pS~V~f~~~----~~--~~vG~~A~~~~~~~p~n~i~~~KrliG 56 (103)
..||+|+|.++ .. .++|++|+.++.+.|.++. ++|-|.
T Consensus 26 ~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~ 69 (333)
T TIGR00904 26 NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK 69 (333)
T ss_pred ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC
Confidence 58999999744 12 6799999998777776654 355554
No 24
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=80.20 E-value=3.1 Score=30.47 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=25.7
Q ss_pred ccceEEEEecC-Cce-eeCHHHHHHHhhCCCcchh
Q psy3916 17 TTPSVVAFTKD-GER-LVGTPARRQAVTNSANTFY 49 (103)
Q Consensus 17 ~~pS~V~f~~~-~~~-~vG~~A~~~~~~~p~n~i~ 49 (103)
..||+|+|..+ +.. .+|+.|+++..+.|.+...
T Consensus 27 ~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~ 61 (336)
T PRK13928 27 NEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA 61 (336)
T ss_pred ccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE
Confidence 47999999853 234 7999999998777877664
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=78.53 E-value=3.1 Score=30.19 Aligned_cols=30 Identities=33% Similarity=0.397 Sum_probs=23.2
Q ss_pred cceEEEEecC-C-ceeeCHHHHHHHhhCCCcc
Q psy3916 18 TPSVVAFTKD-G-ERLVGTPARRQAVTNSANT 47 (103)
Q Consensus 18 ~pS~V~f~~~-~-~~~vG~~A~~~~~~~p~n~ 47 (103)
+||+|+|..+ + ..++|++|++...+.|.+.
T Consensus 33 ~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~ 64 (335)
T PRK13930 33 EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNI 64 (335)
T ss_pred cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCe
Confidence 7999999742 2 4689999998887667654
No 26
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=78.11 E-value=3.4 Score=23.49 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=26.1
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEe
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQG 87 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~ 87 (103)
...+++++|..++.+.+....+.+-|++....++...+.+
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~v 47 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTV 47 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEc
Confidence 4567899999999888888888899998875445545543
No 27
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=71.48 E-value=2.4 Score=23.51 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=24.8
Q ss_pred hhcccCCchHHHhhccccceeEEEcCCCCEEEEeCCeEEc
Q psy3916 54 LIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGKNIRIS 93 (103)
Q Consensus 54 liG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~g~~~s 93 (103)
.||..+....+....-+...++..+++|.+.|.+.++.||
T Consensus 15 ~Vgt~~ag~~~~D~tGn~~~~vtid~dG~~~f~v~~~s~S 54 (57)
T PF09154_consen 15 WVGTNWAGKTFYDYTGNSSETVTIDEDGWGEFPVPPGSVS 54 (57)
T ss_dssp EEEGGGTTEEEEETTSSSSSEEEE-TTSEEEEEE-TTEEE
T ss_pred EEccccCCCEEEEccCCCCCeEEECCCeEEEEEECCCEEE
Confidence 4555544433333444556678888999999999887665
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=66.57 E-value=7.4 Score=29.20 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=24.9
Q ss_pred ccceEEEEecC--C--ceeeCHHHHHHHhhCCCcch
Q psy3916 17 TTPSVVAFTKD--G--ERLVGTPARRQAVTNSANTF 48 (103)
Q Consensus 17 ~~pS~V~f~~~--~--~~~vG~~A~~~~~~~p~n~i 48 (103)
.-||+|++... . -..+|.+|++++-+.|.|..
T Consensus 30 ~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~ 65 (342)
T COG1077 30 NEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV 65 (342)
T ss_pred cCceEEEEeecCCCceEEEehHHHHHHhccCCCCce
Confidence 47999999752 2 23589999999988888754
No 29
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=65.43 E-value=9.7 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=28.2
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcC-CCCEEEEe
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRAS-NGDAWVQG 87 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~-~g~~~~~~ 87 (103)
...+.+++|..+++..+....+.+-|++...+ ++...+.+
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~~~~~v~~ 48 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEVEVSGDDDTLEVTV 48 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCCCeEEEEC
Confidence 35678999999998888877788888876533 34444443
No 30
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=64.43 E-value=5.5 Score=29.63 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=21.0
Q ss_pred ccceEEEEecCC-c-eeeCHHHHHHHhhCCCc
Q psy3916 17 TTPSVVAFTKDG-E-RLVGTPARRQAVTNSAN 46 (103)
Q Consensus 17 ~~pS~V~f~~~~-~-~~vG~~A~~~~~~~p~n 46 (103)
.-||+|+++.+. + ..+|++|+.+.-+.|.+
T Consensus 25 ~epSvVA~~~~~~~i~avG~~A~~m~gktp~~ 56 (326)
T PF06723_consen 25 NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDN 56 (326)
T ss_dssp EEES-EEEETTT--EEEESHHHHTTTTS-GTT
T ss_pred ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCc
Confidence 479999998542 3 35899999988777765
No 31
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=50.70 E-value=10 Score=19.55 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=11.6
Q ss_pred CCCcchhhhhhhhcccCCc
Q psy3916 43 NSANTFYATKRLIGRRFDD 61 (103)
Q Consensus 43 ~p~n~i~~~KrliG~~~~d 61 (103)
.+..++..+|||||..-+.
T Consensus 22 F~~~~~~~ik~LlGv~~~~ 40 (41)
T PF08127_consen 22 FENTSIEYIKRLLGVLPDP 40 (41)
T ss_dssp -SSB-HHHHHHCS-B-TTS
T ss_pred CCCCCHHHHHHHcCCCCCC
Confidence 3567789999999976543
No 32
>PF13101 DUF3945: Protein of unknown function (DUF3945)
Probab=49.23 E-value=24 Score=19.45 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=30.8
Q ss_pred ccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeE
Q psy3916 17 TTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKI 75 (103)
Q Consensus 17 ~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i 75 (103)
.+|++|++++..+.++-..+.. +.--.++-|..+++...+.+.+.-+-.+
T Consensus 2 ~~~~~vs~D~~Tn~l~~~~~~~---------i~ip~~i~g~~Ls~~q~~~L~~G~~v~l 51 (59)
T PF13101_consen 2 KFPSFVSIDKETNELVYMPVDK---------IRIPDKIKGVELSPEQKEDLREGKPVYL 51 (59)
T ss_pred cccEEEEEccccCceEEecccc---------ccccceecCccCCHHHHHHHHCCCeEEE
Confidence 5899999987655555444422 2222677788888776666654444433
No 33
>KOG1004|consensus
Probab=46.56 E-value=34 Score=24.23 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=27.4
Q ss_pred hhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEe
Q psy3916 49 YATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQG 87 (103)
Q Consensus 49 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~ 87 (103)
...++|+- -+.+.+|..-+++||+|.-+-||.+|++.
T Consensus 156 ~~~R~Ll~--p~~~iLq~vGk~~~FEia~GlNGriWV~a 192 (230)
T KOG1004|consen 156 GLCRKLLL--PDCPILQTVGKKYPFEIAFGLNGRIWVKA 192 (230)
T ss_pred HHHHHHHc--CCCcHHHHhhcccceEEEEecCceEEEec
Confidence 34445554 34556787778999999888899999974
No 34
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=43.22 E-value=8.3 Score=25.37 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=16.7
Q ss_pred eEEEEecCCceeeCHHHHHHHhhCC
Q psy3916 20 SVVAFTKDGERLVGTPARRQAVTNS 44 (103)
Q Consensus 20 S~V~f~~~~~~~vG~~A~~~~~~~p 44 (103)
.++.|++.++.++|..|........
T Consensus 82 ~~~~F~~~ae~l~G~sa~el~~~~~ 106 (166)
T cd04476 82 WLTLFDEVAEQIFGKSAEELLELKE 106 (166)
T ss_pred EEEEehHHHHHHhCCCHHHHHHHhh
Confidence 4666766667788888776655443
No 35
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=39.85 E-value=33 Score=24.20 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=27.7
Q ss_pred hhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeC
Q psy3916 49 YATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGK 88 (103)
Q Consensus 49 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~ 88 (103)
.-++||||..- ..++...+..+|+|.-+.||.+|+...
T Consensus 154 ~~i~~lig~~g--~~i~~l~~~~~~~I~ig~NG~VwI~~~ 191 (235)
T PRK04163 154 VKVPRVIGKKG--SMINMLKEETGCDIIVGQNGRIWIKGP 191 (235)
T ss_pred HHHHhhcCCCC--hhHhhhhhhhCcEEEEcCCcEEEEeeC
Confidence 45678888653 346655567899998888999999743
No 36
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=38.00 E-value=33 Score=24.60 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=29.6
Q ss_pred hhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeCC
Q psy3916 49 YATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGKN 89 (103)
Q Consensus 49 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~g 89 (103)
+.+-|++|+..+= ++..+++..|+|.=+.||.+|+....
T Consensus 155 ~kVpRvig~~~sm--~~~l~~~~~~~I~VG~NG~IWV~~~~ 193 (239)
T COG1097 155 SKVPRVIGKKGSM--LNMLKEKTGCEIIVGQNGRIWVDGEN 193 (239)
T ss_pred hhcceEecCCCcH--HHHhhhhcCeEEEEecCCEEEecCCC
Confidence 4566899998763 45555678999988899999997543
No 37
>KOG0855|consensus
Probab=32.91 E-value=29 Score=23.91 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=18.8
Q ss_pred hhcccCCchHHHhh---ccccceeEEEcC
Q psy3916 54 LIGRRFDDPEIKKD---MKNLSYKIVRAS 79 (103)
Q Consensus 54 liG~~~~d~~v~~~---~~~~p~~i~~~~ 79 (103)
.+|.+++|...|+. +.++||.+..+.
T Consensus 127 V~GlS~D~s~sqKaF~sKqnlPYhLLSDp 155 (211)
T KOG0855|consen 127 VIGLSGDDSASQKAFASKQNLPYHLLSDP 155 (211)
T ss_pred EEeeccCchHHHHHhhhhccCCeeeecCc
Confidence 78888888766654 357899887554
No 38
>COG3811 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=96 Score=18.40 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=34.9
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEE
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVR 77 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~ 77 (103)
.+|.+++..++.|. +.|+-+|+.+|-. .|.+++.-|++|--++.- +....-||.|..
T Consensus 16 qGGrIe~~rd~~gr--I~~v~C~tRdGw~------------l~dctlavF~kLKrK~li-----~S~~G~PYRIt~ 72 (85)
T COG3811 16 QGGRIEIERDASGR--ITSVECYTRDGWL------------LPDCTLAVFRKLKRKKLI-----KSSQGGPYRITR 72 (85)
T ss_pred cCCeEEEEecCCCc--EEEEEEecccccc------------cCCccHHHHHHHHhccce-----eccCCCceEeeH
Confidence 47889999876655 6778889877443 355666666665443321 111345787753
No 39
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=28.61 E-value=82 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=22.6
Q ss_pred cceEEEEecCCce--eeCHHHHHHHhhCCCc
Q psy3916 18 TPSVVAFTKDGER--LVGTPARRQAVTNSAN 46 (103)
Q Consensus 18 ~pS~V~f~~~~~~--~vG~~A~~~~~~~p~n 46 (103)
=|-+|.|+++|.. =-|+.|......+|.-
T Consensus 53 DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~I 83 (180)
T PF14097_consen 53 DPVLVMFDDKGFIGEGPGEQALEYVANHPDI 83 (180)
T ss_pred CCEEEEEeCCCCCCCCccHHHHHHHHcCCCc
Confidence 4889999876533 3699999999998864
No 40
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=26.92 E-value=73 Score=26.00 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=27.7
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcCCC
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG 81 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g 81 (103)
+..+.|++|..++.+.+....+++-|.+....++
T Consensus 271 ~~~i~~llG~~ls~eei~~iL~rLg~~~~~~~~~ 304 (650)
T COG0072 271 LERINRLLGLELSAEEIEKILKRLGFKVEVKGDG 304 (650)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCeeEecCCc
Confidence 4578899999999999988888899988765444
No 41
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=26.67 E-value=1.1e+02 Score=17.27 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=20.3
Q ss_pred ccceeEEEcCCCCEEEEeCCeEEcc
Q psy3916 70 NLSYKIVRASNGDAWVQGKNIRISE 94 (103)
Q Consensus 70 ~~p~~i~~~~~g~~~~~~~g~~~sp 94 (103)
.-||.|.-+.-+.+.+.++|+.+.+
T Consensus 37 ~~~~~i~iGna~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 37 KEPFRIRIGNAGAVEVTVNGKPVDL 61 (77)
T ss_pred CCCEEEEEeCCCcEEEEECCEECCC
Confidence 4678888777788889999988776
No 42
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=26.30 E-value=59 Score=19.16 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=15.7
Q ss_pred CCcccceEEEEecCCc---eeeCHHHHHH
Q psy3916 14 GSRTTPSVVAFTKDGE---RLVGTPARRQ 39 (103)
Q Consensus 14 g~r~~pS~V~f~~~~~---~~vG~~A~~~ 39 (103)
|-+.||+++.++.+|+ ++.|....++
T Consensus 79 ~v~gtPt~~~~d~~G~~v~~~~G~~~~~~ 107 (112)
T PF13098_consen 79 GVNGTPTIVFLDKDGKIVYRIPGYLSPEE 107 (112)
T ss_dssp T--SSSEEEECTTTSCEEEEEESS--HHH
T ss_pred CCCccCEEEEEcCCCCEEEEecCCCCHHH
Confidence 5567999999986666 5567654433
No 43
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=25.47 E-value=31 Score=24.23 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=13.0
Q ss_pred CCCcchhhhhhhhcccCC
Q psy3916 43 NSANTFYATKRLIGRRFD 60 (103)
Q Consensus 43 ~p~n~i~~~KrliG~~~~ 60 (103)
+....---||||||.+++
T Consensus 100 HSGHfSKiFkRLMGTpC~ 117 (261)
T COG4813 100 HSGHFSKIFKRLMGTPCA 117 (261)
T ss_pred eccchhHHHHHHcCCccc
Confidence 445545568999998865
No 44
>PRK14645 hypothetical protein; Provisional
Probab=25.37 E-value=89 Score=20.70 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=26.3
Q ss_pred CCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeCCeE
Q psy3916 44 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGKNIR 91 (103)
Q Consensus 44 p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~g~~ 91 (103)
|-....+|+|++|+... ++...+.+--.+..-.++.+.+.++|++
T Consensus 90 pL~~~~df~r~~G~~v~---v~~~~k~~~G~L~~~~d~~i~l~~~~~~ 134 (154)
T PRK14645 90 PLFTARHFERFAGLKAK---VRGPGENFTGRIKAVSGDQVTFDVGGED 134 (154)
T ss_pred CCCCHHHHHHhCCCEEE---EEcCCeEEEEEEEEEeCCEEEEEECCeE
Confidence 55667788888887633 2222234444455445566666666654
No 45
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.84 E-value=84 Score=14.19 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=12.9
Q ss_pred cceEEEEecCCceeeCH
Q psy3916 18 TPSVVAFTKDGERLVGT 34 (103)
Q Consensus 18 ~pS~V~f~~~~~~~vG~ 34 (103)
.|+-|+.+++|+.+|.+
T Consensus 3 ~P~gvav~~~g~i~VaD 19 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVAD 19 (28)
T ss_dssp SEEEEEEETTSEEEEEE
T ss_pred CCcEEEEeCCCCEEEEE
Confidence 57888888777877765
No 46
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=24.36 E-value=2.1e+02 Score=18.72 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCch
Q psy3916 14 GSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDP 62 (103)
Q Consensus 14 g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~ 62 (103)
|.---|+...|+ -+++|.+|..+..+.-..+=.+=|=|+|-...|.
T Consensus 44 G~~d~~ey~~fD---~~V~G~eA~~Lv~r~~~av~~~~KVli~FrlgDl 89 (137)
T PF12101_consen 44 GPADNPEYRYFD---CRVVGEEAKELVRRCQKAVDEDKKVLIGFRLGDL 89 (137)
T ss_pred cCCCCccEEEEE---EEEecHHHHHHHHHHHhhcccCCcEEEEEEecCC
Confidence 333446666664 5789999999888765555455555777666663
No 47
>PF15533 Toxin_54: Putative toxin 54
Probab=23.37 E-value=1.5e+02 Score=16.92 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeCC
Q psy3916 44 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGKN 89 (103)
Q Consensus 44 p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~g 89 (103)
-..-+..+|| ||.+ +..-|.+-.+.+|.+++.-.|
T Consensus 19 ~G~d~H~lK~-~g~~----------~~s~yDlykD~~gni~ik~KG 53 (66)
T PF15533_consen 19 NGIDAHELKR-LGKK----------NISNYDLYKDREGNIYIKPKG 53 (66)
T ss_pred cCCcHHHHHh-hccC----------CcccceeEEcCCCCEEEecCC
Confidence 3445677888 6654 224467777778999887654
No 48
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.81 E-value=1.5e+02 Score=19.73 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCcchhhhhhhhcccCCchH--HHhhccccceeEEEcCCCCEEEEeCCeE
Q psy3916 44 SANTFYATKRLIGRRFDDPE--IKKDMKNLSYKIVRASNGDAWVQGKNIR 91 (103)
Q Consensus 44 p~n~i~~~KrliG~~~~d~~--v~~~~~~~p~~i~~~~~g~~~~~~~g~~ 91 (103)
|-.+..+|+|++|+...=.. .....+.|.=++..-++..+.+.+++++
T Consensus 87 pL~~~~~f~r~~G~~Vkv~l~~~~~~~k~~~G~i~~~d~~~v~~~~~~k~ 136 (153)
T COG0779 87 PLKTAEHFARFIGEKVKVKLRLPIEGRKKFEGKIVAVDGETVTLEVDGKE 136 (153)
T ss_pred CcCCHHHHHHhcCcEEEEEEecccCCceEEEEEEEEEcCCeEEEEECCEE
Confidence 56778899999998643110 0112345555566555566777788877
No 49
>PF13322 DUF4092: Domain of unknown function (DUF4092)
Probab=22.33 E-value=1e+02 Score=20.94 Aligned_cols=29 Identities=24% Similarity=0.580 Sum_probs=17.8
Q ss_pred ccceeEEEc--CCCCEEEEeCCeEEcceeEEeccC
Q psy3916 70 NLSYKIVRA--SNGDAWVQGKNIRISEVVEVLCPN 102 (103)
Q Consensus 70 ~~p~~i~~~--~~g~~~~~~~g~~~sp~~~i~~p~ 102 (103)
.+|| |..+ ..|++.| .|+..-|.+ ..||.
T Consensus 134 nLPF-vs~GeIG~GKVm~--mGNs~Y~SI-L~CP~ 164 (172)
T PF13322_consen 134 NLPF-VSIGEIGKGKVMV--MGNSMYNSI-LVCPN 164 (172)
T ss_pred ecce-eeecccccceEEE--ecCCCCCce-EECCC
Confidence 4566 3322 3666544 676667777 89995
No 50
>PF11343 DUF3145: Protein of unknown function (DUF3145); InterPro: IPR021491 This family of proteins with unknown function appear to be restricted to Actinobacteria.
Probab=22.16 E-value=64 Score=21.64 Aligned_cols=58 Identities=26% Similarity=0.455 Sum_probs=40.6
Q ss_pred eeEEEeCC----CCCc--ccceEEEEe----cCCceeeCHHHHHHHhh----CCCcchhhhhhhhcccCCch
Q psy3916 5 QAKVIENS----EGSR--TTPSVVAFT----KDGERLVGTPARRQAVT----NSANTFYATKRLIGRRFDDP 62 (103)
Q Consensus 5 ~~~ii~n~----~g~r--~~pS~V~f~----~~~~~~vG~~A~~~~~~----~p~n~i~~~KrliG~~~~d~ 62 (103)
..||-.+. +|.| .||+.=-|. -+|+++||+...+.+.. ++...-..+-++||...|++
T Consensus 68 RfEVTEdps~g~DG~R~s~tP~LGi~~a~t~a~Gdvvv~E~rlRa~~~~a~~~~~~l~~el~~~LG~aWD~e 139 (158)
T PF11343_consen 68 RFEVTEDPSPGVDGERWSHTPDLGIFHAQTDANGDVVVPEDRLRAAMERARGDGEDLARELDRALGTAWDDE 139 (158)
T ss_pred EEEEEeCCCCCCCCceEecCCCCcceeeeecCCCCEecCHHHHHHHHHHhcCCHHHHHHHHHHHhCCchhhh
Confidence 45555542 4565 588765553 25799999998876554 56666778889999998763
No 51
>COG1427 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=21.94 E-value=98 Score=22.38 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCceeeCHHHHHHHhhCCCcchh----hhhhhhccc
Q psy3916 27 DGERLVGTPARRQAVTNSANTFY----ATKRLIGRR 58 (103)
Q Consensus 27 ~~~~~vG~~A~~~~~~~p~n~i~----~~KrliG~~ 58 (103)
++..++|++|.+...+.|.-.+. .++++-|.+
T Consensus 132 d~~LlIGDeAL~~~~~~~~~~~~DLg~~W~eltglp 167 (252)
T COG1427 132 DGALLIGDEALRAVYSLPGKLIYDLGELWYELTGLP 167 (252)
T ss_pred CceEEecHHHHHhhccCCCceehhHHHHHHHHHCCC
Confidence 46889999999977777776444 556666654
Done!