Query psy3916
Match_columns 103
No_of_seqs 113 out of 1014
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:40:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9q_A Chaperone protein DNAK; 99.8 3.3E-20 1.1E-24 143.3 7.5 95 1-95 19-113 (605)
2 2kho_A Heat shock protein 70; 99.8 1E-19 3.6E-24 140.5 6.5 95 1-95 19-113 (605)
3 3d2f_A Heat shock protein homo 99.8 4.8E-19 1.6E-23 138.5 7.1 94 1-95 19-116 (675)
4 1yuw_A Heat shock cognate 71 k 99.7 9.1E-19 3.1E-23 134.1 6.0 93 1-95 21-117 (554)
5 1dkg_D Molecular chaperone DNA 99.7 1.4E-17 4.7E-22 121.4 7.4 94 2-95 20-113 (383)
6 3i33_A Heat shock-related 70 k 99.7 7.8E-17 2.7E-21 118.2 6.9 91 2-94 41-135 (404)
7 3qfu_A 78 kDa glucose-regulate 99.7 1.2E-16 4.2E-21 116.4 6.7 84 2-87 36-119 (394)
8 4gni_A Putative heat shock pro 99.4 6.7E-13 2.3E-17 97.5 6.0 83 2-88 31-113 (409)
9 2v7y_A Chaperone protein DNAK; 99.2 1.8E-11 6E-16 92.8 5.3 57 2-60 20-76 (509)
10 1jce_A ROD shape-determining p 92.5 0.061 2.1E-06 38.0 2.2 32 18-49 28-61 (344)
11 2ja9_A Exosome complex exonucl 59.6 7 0.00024 25.5 2.7 40 48-88 99-138 (175)
12 2ba0_A Archeal exosome RNA bin 58.4 7.1 0.00024 26.4 2.7 38 47-86 143-180 (229)
13 2nn6_G Exosome complex exonucl 55.9 6.7 0.00023 27.7 2.3 38 48-87 218-255 (289)
14 2je6_I RRP4, exosome complex R 49.3 8.5 0.00029 26.5 2.0 39 48-88 163-201 (251)
15 2z0s_A Probable exosome comple 40.9 19 0.00065 24.3 2.6 39 48-88 156-194 (235)
16 3mgb_A TEG12; sulfotransferase 29.6 12 0.00042 26.7 0.2 37 38-74 202-240 (319)
17 3osj_A Phycobilisome LCM core- 23.7 30 0.001 22.0 1.2 13 50-62 93-105 (147)
18 3ohw_B Phycobilisome LCM core- 22.3 34 0.0012 21.8 1.3 13 49-61 93-105 (148)
19 4hci_A Cupredoxin 1; structura 22.1 58 0.002 18.3 2.2 20 82-102 15-34 (100)
20 2jtd_A Myomesin-1, skelemin; i 21.9 30 0.001 21.7 0.9 45 49-96 22-68 (142)
21 2ky4_A Phycobilisome linker po 21.7 36 0.0012 21.7 1.2 13 49-61 84-96 (149)
22 3pru_C Phycobilisome 32.1 kDa 21.3 36 0.0012 21.8 1.2 13 49-61 86-98 (154)
23 3nph_B Phycobilisome 32.1 kDa 21.2 37 0.0013 21.6 1.3 13 49-61 81-93 (148)
24 3dml_A Putative uncharacterize 20.6 86 0.0029 18.6 2.8 22 14-36 73-97 (116)
25 1aqu_A EST, estrogen sulfotran 20.4 21 0.00072 24.6 -0.0 31 39-69 197-227 (297)
26 2qgv_A Hydrogenase-1 operon pr 20.3 56 0.0019 20.3 2.0 24 13-37 87-113 (140)
No 1
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.81 E-value=3.3e-20 Score=143.33 Aligned_cols=95 Identities=54% Similarity=0.938 Sum_probs=89.0
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++++|..|++++||+|+|++++++++|..|++++..+|.|+++++|||||++|+|+.++...+.+||+++...+
T Consensus 19 ~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~ 98 (605)
T 4b9q_A 19 MDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN 98 (605)
T ss_dssp EETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTT
T ss_pred EECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCC
Confidence 36789999999999999999999987779999999999999999999999999999999999999999999999999889
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.+.++|+.|+|+
T Consensus 99 g~~~~~~~~~~~~p~ 113 (605)
T 4b9q_A 99 GDAWVEVKGQKMAPP 113 (605)
T ss_dssp SBEEEEETTEEECHH
T ss_pred CceEEEECCEEECHH
Confidence 999999988888875
No 2
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.79 E-value=1e-19 Score=140.54 Aligned_cols=95 Identities=55% Similarity=0.961 Sum_probs=87.4
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|+++|++|..|++++||+|+|++++++++|..|++++..+|.++++++||+||++++|+.++...+.+||+++.+.+
T Consensus 19 ~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~ 98 (605)
T 2kho_A 19 MDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN 98 (605)
T ss_dssp EETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTT
T ss_pred EECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCC
Confidence 35788999999999999999999976789999999999999999999999999999999999898888889999988889
Q ss_pred CCEEEEeCCeEEcce
Q psy3916 81 GDAWVQGKNIRISEV 95 (103)
Q Consensus 81 g~~~~~~~g~~~sp~ 95 (103)
|.+.++++|+.|+|+
T Consensus 99 g~~~i~~~g~~~~~~ 113 (605)
T 2kho_A 99 GDAWVEVKGQKMAPP 113 (605)
T ss_dssp SBEEEEETTEEECHH
T ss_pred CceEEEECCEEEcHH
Confidence 999999988888775
No 3
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.77 E-value=4.8e-19 Score=138.47 Aligned_cols=94 Identities=23% Similarity=0.418 Sum_probs=83.6
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|+++||+|+.|+|+|||+|+|++ +++++|..|++++..+|.|+++++|||||++++|+.++.+.++|||+++...+
T Consensus 19 ~~~g~~~ii~n~~g~r~tPS~Vaf~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~ 97 (675)
T 3d2f_A 19 ARNRGIDIVVNEVSNRSTPSVVGFGP-KNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDD 97 (675)
T ss_dssp EETTEEEEECCTTSCSSEECCEEECS-SSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTT
T ss_pred EECCeeEEEECCCCCcccceEEEECC-CcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCC
Confidence 35788999999999999999999984 58999999999999999999999999999999999999888999999998878
Q ss_pred CCEEEEeC--C--eEEcce
Q psy3916 81 GDAWVQGK--N--IRISEV 95 (103)
Q Consensus 81 g~~~~~~~--g--~~~sp~ 95 (103)
|.+.+++. | +.|+|+
T Consensus 98 g~~~~~~~~~g~~~~~spe 116 (675)
T 3d2f_A 98 KKTGAEVRFAGEKHVFSAT 116 (675)
T ss_dssp SBEEEEEEETTEEEEEEHH
T ss_pred CceEEEEEeCCCCceEcHH
Confidence 98887653 4 456653
No 4
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.75 E-value=9.1e-19 Score=134.09 Aligned_cols=93 Identities=42% Similarity=0.656 Sum_probs=80.4
Q ss_pred CCCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCC
Q psy3916 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN 80 (103)
Q Consensus 1 ~~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~ 80 (103)
|++|++++|+|+.|+++|||+|+|++ +++++|..|++++..+|.|+++++|||||++++|+.++..++.|||+++. .+
T Consensus 21 ~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~-~~ 98 (554)
T 1yuw_A 21 FQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVN-DA 98 (554)
T ss_dssp ECSSSEEECCCTTSCSEEECCEEECS-SCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEE-ET
T ss_pred EECCEEEEEECCCCCeecceEEEEcC-CcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEe-cC
Confidence 35788999999999999999999985 58999999999999999999999999999999999999888999999984 36
Q ss_pred CCEEEEe--CC--eEEcce
Q psy3916 81 GDAWVQG--KN--IRISEV 95 (103)
Q Consensus 81 g~~~~~~--~g--~~~sp~ 95 (103)
|.+.+.+ .| +.|+|+
T Consensus 99 g~~~~~v~~~~~~~~~sp~ 117 (554)
T 1yuw_A 99 GRPKVQVEYKGETKSFYPE 117 (554)
T ss_dssp TEEEEEEEETTEEEEECHH
T ss_pred CceEEEEEECCCceEEcHH
Confidence 7777664 34 455553
No 5
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.71 E-value=1.4e-17 Score=121.44 Aligned_cols=94 Identities=54% Similarity=0.956 Sum_probs=85.8
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCC
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG 81 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g 81 (103)
++|+++++.|.+|++++||+|+|++++++++|..|+++...+|.++++++||+||++++|+.++...+.+||+++.+.+|
T Consensus 20 ~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~ 99 (383)
T 1dkg_D 20 DGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNG 99 (383)
T ss_dssp ETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSS
T ss_pred ECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCC
Confidence 46789999999999999999999766789999999999999999999999999999999998888888899999888889
Q ss_pred CEEEEeCCeEEcce
Q psy3916 82 DAWVQGKNIRISEV 95 (103)
Q Consensus 82 ~~~~~~~g~~~sp~ 95 (103)
.+.++++|+.|+|+
T Consensus 100 ~~~~~~~g~~~~~~ 113 (383)
T 1dkg_D 100 DAWVEVKGQKMAPP 113 (383)
T ss_dssp BEEEEETTEEECHH
T ss_pred cEEEEECCEEEcHH
Confidence 99898888888775
No 6
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.67 E-value=7.8e-17 Score=118.16 Aligned_cols=91 Identities=41% Similarity=0.681 Sum_probs=79.1
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCC
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG 81 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g 81 (103)
++|++++++|..|++++||+|+|.+ +++++|..|++++..+|.++++.+||+||++++|+.++...+.|||++.. .+|
T Consensus 41 ~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~-~~g 118 (404)
T 3i33_A 41 QHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVS-EGG 118 (404)
T ss_dssp ETTEEEECCCTTSCSSEECCEEECS-SCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEE-ETT
T ss_pred ECCeeEEEECCCCCcccceEEEECC-CCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEc-cCC
Confidence 4688999999999999999999985 58999999999999999999999999999999999999988999999885 456
Q ss_pred CEEEEe--CC--eEEcc
Q psy3916 82 DAWVQG--KN--IRISE 94 (103)
Q Consensus 82 ~~~~~~--~g--~~~sp 94 (103)
...+.+ .| +.|+|
T Consensus 119 ~~~~~v~~~~~~~~~~~ 135 (404)
T 3i33_A 119 KPKVQVEYKGETKTFFP 135 (404)
T ss_dssp EEEEEEEETTEEEEECH
T ss_pred ceEEEEEeCCCceEEcH
Confidence 666654 45 45544
No 7
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.66 E-value=1.2e-16 Score=116.40 Aligned_cols=84 Identities=38% Similarity=0.710 Sum_probs=76.0
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCC
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG 81 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g 81 (103)
++|++++++|..|++++||+|+|.+ +++++|..|+++...+|.++++.+||+||++++|+.++...+.|||+++ +.+|
T Consensus 36 ~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 113 (394)
T 3qfu_A 36 KNGKTEILANEQGNRITPSYVAFTD-DERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVV-NKDG 113 (394)
T ss_dssp CSSCEEECCCTTSCSSEECCEEECS-SCEEESHHHHHTGGGCGGGEECCGGGTTTCCTTCHHHHHHHTTCSSEEE-EETT
T ss_pred ECCeeEEEECCCCCEeeceEEEEeC-CcEEecHHHHHhhHhCcccCHHHHHHHhCCCCCcHHHHHHhhcCCeEEE-cCCC
Confidence 5688999999999999999999985 5899999999999999999999999999999999999999899999988 4567
Q ss_pred CEEEEe
Q psy3916 82 DAWVQG 87 (103)
Q Consensus 82 ~~~~~~ 87 (103)
...+.+
T Consensus 114 ~~~~~~ 119 (394)
T 3qfu_A 114 KPAVEV 119 (394)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 766664
No 8
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.37 E-value=6.7e-13 Score=97.51 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCCchHHHhhccccceeEEEcCCC
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG 81 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g 81 (103)
+++++++++|..|++++||+|+|. ++++++|..|++++.++|.+++..+||+||++++++.++.. .+++.+. ..+|
T Consensus 31 ~~g~~~ii~~~~g~~~~PS~v~~~-~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~~~~--~~~~~~~-~~~g 106 (409)
T 4gni_A 31 VDDKAEVIANEDGDRQIPTILSYV-DGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHN--HASAHPQ-EAGD 106 (409)
T ss_dssp ETTEEEEECCTTSCSSEECEEEEE-TTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCCGGG--TTSCCCE-EETT
T ss_pred eCCceEEEECCCCCccCceEEEEC-CCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhhhhh--cccccee-cCCC
Confidence 468899999999999999999998 56999999999999999999999999999999998766543 3455544 3467
Q ss_pred CEEEEeC
Q psy3916 82 DAWVQGK 88 (103)
Q Consensus 82 ~~~~~~~ 88 (103)
.+.+++.
T Consensus 107 ~~~~~v~ 113 (409)
T 4gni_A 107 NVVFTIK 113 (409)
T ss_dssp EEEEEEC
T ss_pred cEEEEEe
Confidence 7777754
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.19 E-value=1.8e-11 Score=92.81 Aligned_cols=57 Identities=60% Similarity=0.896 Sum_probs=52.6
Q ss_pred CCCeeEEEeCCCCCcccceEEEEecCCceeeCHHHHHHHhhCCCcchhhhhhhhcccCC
Q psy3916 2 EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60 (103)
Q Consensus 2 ~~~~~~ii~n~~g~r~~pS~V~f~~~~~~~vG~~A~~~~~~~p~n~i~~~KrliG~~~~ 60 (103)
++|++++++|..|++++||+|+|. ++++++|..|+++...+| ++++++||+||++|.
T Consensus 20 ~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~ 76 (509)
T 2v7y_A 20 EGGEVKVIPNPEGNRTTPSVVAFK-NGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK 76 (509)
T ss_dssp ETTEEEECCCTTSCSSEECEEEES-SSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC
T ss_pred ECCEEEEEECCCCCcccceEEEEC-CCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE
Confidence 468899999999999999999995 679999999999999999 999999999998764
No 10
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=92.48 E-value=0.061 Score=38.03 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=26.4
Q ss_pred cceEEEEecC-Cce-eeCHHHHHHHhhCCCcchh
Q psy3916 18 TPSVVAFTKD-GER-LVGTPARRQAVTNSANTFY 49 (103)
Q Consensus 18 ~pS~V~f~~~-~~~-~vG~~A~~~~~~~p~n~i~ 49 (103)
+||+|+|+++ ++. ++|++|+++..++|.++..
T Consensus 28 ~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~ 61 (344)
T 1jce_A 28 EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA 61 (344)
T ss_dssp EESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE
T ss_pred eCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE
Confidence 8999999865 444 7999999999888888653
No 11
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=59.63 E-value=7 Score=25.50 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=28.4
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeC
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGK 88 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~ 88 (103)
..-++|++|++-. ..++...+.++|++.-+.||.+|+...
T Consensus 99 ~~~v~rl~~~~~~-~~l~~l~~~~~~ei~vG~NG~IWi~~~ 138 (175)
T 2ja9_A 99 LNFARQLLFNNDF-PLLKVLAAHTKFEVAIGLNGKIWVKCE 138 (175)
T ss_dssp HHHHHHHHHCTTC-CHHHHHHTTCCCEEEEETTTEEEEECS
T ss_pred HHHhhHHhcCCCc-chHHhhhccCCeEEEEECCcEEEEecC
Confidence 3467899985322 235555567899998889999998753
No 12
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=58.42 E-value=7.1 Score=26.45 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=27.8
Q ss_pred chhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEE
Q psy3916 47 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQ 86 (103)
Q Consensus 47 ~i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~ 86 (103)
.-..++|++|+.. ..++...+.++|++.-+.||.+|+.
T Consensus 143 s~~~v~rl~~~~~--~~l~~l~~~~~~ei~vG~NG~IWi~ 180 (229)
T 2ba0_A 143 NPARVPRVIGKKG--SMIKLLKSELDVQIVVGQNGLIWVN 180 (229)
T ss_dssp CGGGHHHHHCGGG--HHHHHHHHHHTCEEEECTTSEEEEE
T ss_pred CHHHhHHHhcCCc--hHHHHhcccCCeEEEEECCcEEEEe
Confidence 3456889998652 2345444578999977899999987
No 13
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=55.94 E-value=6.7 Score=27.70 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=28.6
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEe
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQG 87 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~ 87 (103)
...++||+|+... .++...+.++|+|.-+.||.+|+..
T Consensus 218 ~~lvrrl~~~~~~--~l~~L~~~~~~eI~vG~NG~IWI~~ 255 (289)
T 2nn6_G 218 LGLIRKLLAPDCE--IIQEVGKLYPLEIVFGMNGRIWVKA 255 (289)
T ss_dssp HHHHHHHHCTTCS--HHHHTTCSSSCCCEEETTTEEEECC
T ss_pred hHHhhhhhcCchh--HHHHhcccCCeEEEEECCcEEEEec
Confidence 4578899987642 4555556789999878999999864
No 14
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=49.32 E-value=8.5 Score=26.45 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=23.7
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeC
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGK 88 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~ 88 (103)
-..++|+||++- ..++...+.++|++.-+.||.+|+...
T Consensus 163 ~~~v~rl~~~~~--~~l~~l~~~~~~ei~vG~NG~IWi~~~ 201 (251)
T 2je6_I 163 PVKVPRVIGKNK--SMYETLTSKSGCSIFVANNGRIWATCP 201 (251)
T ss_dssp GGGHHHHHCGGG--HHHHHHHTTC---CEECTTSEEEC---
T ss_pred HHHhHHHhcCcc--hHHHHhcccCCeEEEEECCcEEEEeCC
Confidence 457889999652 235555457899987788999998743
No 15
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=40.87 E-value=19 Score=24.29 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=27.3
Q ss_pred hhhhhhhhcccCCchHHHhhccccceeEEEcCCCCEEEEeC
Q psy3916 48 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGK 88 (103)
Q Consensus 48 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~~g~~~~~~~ 88 (103)
-..++|++|++. ..++...+.++|++.-+.||.+|+...
T Consensus 156 ~~~~~rl~~~~~--~~l~~l~~~~~~~i~vG~NG~IWi~~~ 194 (235)
T 2z0s_A 156 PAKVPRVIGRKM--SMLKTLEEKTECKIFVARNGRIHLECP 194 (235)
T ss_dssp GGGSGGGTCGGG--HHHHHHHHHHCCEEEEETTTEEEEECS
T ss_pred HHHhHHHhcCcc--hHHHHhcccCCeEEEEeCCCEEEEecC
Confidence 357889998652 234443446899987678999998754
No 16
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Probab=29.56 E-value=12 Score=26.66 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHhhCCCcchhhhhhhh--cccCCchHHHhhcccccee
Q psy3916 38 RQAVTNSANTFYATKRLI--GRRFDDPEIKKDMKNLSYK 74 (103)
Q Consensus 38 ~~~~~~p~n~i~~~Krli--G~~~~d~~v~~~~~~~p~~ 74 (103)
..+..+|..++..+-++| |.+++++.++...+...|+
T Consensus 202 EDL~~Dp~~~v~kI~~FL~~G~~~~~e~l~~iv~~~SFe 240 (319)
T 3mgb_A 202 EDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLE 240 (319)
T ss_dssp HHHHHCHHHHHHHHHHHHTCSSCCCHHHHHHHHHTTSHH
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCHH
Confidence 346678888899999999 9999988777665555554
No 17
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=23.68 E-value=30 Score=22.01 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.4
Q ss_pred hhhhhhcccCCch
Q psy3916 50 ATKRLIGRRFDDP 62 (103)
Q Consensus 50 ~~KrliG~~~~d~ 62 (103)
.+||||||...+.
T Consensus 93 ~~khlLGR~p~~~ 105 (147)
T 3osj_A 93 AFRHILGRGPSSR 105 (147)
T ss_dssp HHHHHHSSCCCCH
T ss_pred HhhhhcCCCCCCH
Confidence 7999999986543
No 18
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=22.34 E-value=34 Score=21.77 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=10.3
Q ss_pred hhhhhhhcccCCc
Q psy3916 49 YATKRLIGRRFDD 61 (103)
Q Consensus 49 ~~~KrliG~~~~d 61 (103)
..+||||||...+
T Consensus 93 l~~khlLGRap~~ 105 (148)
T 3ohw_B 93 MGTKHFLGRAPLN 105 (148)
T ss_dssp HHHHHHTSSCCSC
T ss_pred HHhhhhcCCCCCC
Confidence 3789999998554
No 19
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=22.10 E-value=58 Score=18.29 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=14.3
Q ss_pred CEEEEeCCeEEcceeEEeccC
Q psy3916 82 DAWVQGKNIRISEVVEVLCPN 102 (103)
Q Consensus 82 ~~~~~~~g~~~sp~~~i~~p~ 102 (103)
.+.+++.+..|+|.. |++|+
T Consensus 15 ~v~V~~~~~~F~P~~-i~v~~ 34 (100)
T 4hci_A 15 VIEVELNDDYFNPNV-ITIPI 34 (100)
T ss_dssp CEEEEEETTEEESSE-EEECT
T ss_pred EEEEEEECCEEeCCE-EEECC
Confidence 455666677888886 88774
No 20
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=21.89 E-value=30 Score=21.71 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=28.0
Q ss_pred hhhhhhhcccCCc--hHHHhhccccceeEEEcCCCCEEEEeCCeEEccee
Q psy3916 49 YATKRLIGRRFDD--PEIKKDMKNLSYKIVRASNGDAWVQGKNIRISEVV 96 (103)
Q Consensus 49 ~~~KrliG~~~~d--~~v~~~~~~~p~~i~~~~~g~~~~~~~g~~~sp~~ 96 (103)
-.+|||+-++.+- |.+ ..+..|.|+|.+ +|.|.|-..-+.+||..
T Consensus 22 eeL~rLl~lSheik~P~I-pLksel~vEiLE--kG~VRfWlQaeklS~~a 68 (142)
T 2jtd_A 22 EEMKRLLALSQEHKFPTV-PTKSELAVEILE--KGQVRFWMQAEKLSSNA 68 (142)
T ss_dssp CCSHHHHHCCCCCCCSSC-SSSCEEEEEEET--TTEEEEEEECSCCTTCC
T ss_pred HHHHHHHHhhhhccCCcc-cchhhhhHHHHh--cCcEEEEEEhhhcCCCc
Confidence 3789999888653 323 344668888764 56666655545555543
No 21
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=21.68 E-value=36 Score=21.71 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=10.3
Q ss_pred hhhhhhhcccCCc
Q psy3916 49 YATKRLIGRRFDD 61 (103)
Q Consensus 49 ~~~KrliG~~~~d 61 (103)
..+||||||...+
T Consensus 84 l~~khlLGRap~~ 96 (149)
T 2ky4_A 84 LGTKHFLGRAPID 96 (149)
T ss_dssp HHHHHHTSSCCCS
T ss_pred HhhhhccCCCCCC
Confidence 3899999998554
No 22
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=21.27 E-value=36 Score=21.80 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=10.3
Q ss_pred hhhhhhhcccCCc
Q psy3916 49 YATKRLIGRRFDD 61 (103)
Q Consensus 49 ~~~KrliG~~~~d 61 (103)
..+||||||...+
T Consensus 86 l~~khlLGR~p~~ 98 (154)
T 3pru_C 86 LNYKHLLGRAPFS 98 (154)
T ss_dssp HHHHHHHSSCCSC
T ss_pred HHHHHhhCCCCCC
Confidence 3799999998554
No 23
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=21.24 E-value=37 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=10.3
Q ss_pred hhhhhhhcccCCc
Q psy3916 49 YATKRLIGRRFDD 61 (103)
Q Consensus 49 ~~~KrliG~~~~d 61 (103)
..+||||||...+
T Consensus 81 l~~khlLGRap~~ 93 (148)
T 3nph_B 81 LNYKHLLGRAPYD 93 (148)
T ss_dssp HHHHHHTSSCCSS
T ss_pred HHhhhhcCCCCCC
Confidence 3899999998554
No 24
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=20.63 E-value=86 Score=18.65 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=15.0
Q ss_pred CCcccceEEEEecCC---ceeeCHHH
Q psy3916 14 GSRTTPSVVAFTKDG---ERLVGTPA 36 (103)
Q Consensus 14 g~r~~pS~V~f~~~~---~~~vG~~A 36 (103)
+=+.+|++|.|. +| .+++|...
T Consensus 73 ~V~g~PT~i~f~-~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 73 PVTFTPTFVLMA-GDVESGRLEGYPG 97 (116)
T ss_dssp CCCSSSEEEEEE-TTEEEEEEECCCC
T ss_pred CCCCCCEEEEEE-CCEEEeeecCCCC
Confidence 335789999998 66 34566443
No 25
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*
Probab=20.38 E-value=21 Score=24.57 Aligned_cols=31 Identities=3% Similarity=0.056 Sum_probs=23.4
Q ss_pred HHhhCCCcchhhhhhhhcccCCchHHHhhcc
Q psy3916 39 QAVTNSANTFYATKRLIGRRFDDPEIKKDMK 69 (103)
Q Consensus 39 ~~~~~p~n~i~~~KrliG~~~~d~~v~~~~~ 69 (103)
.+..+|..++..+-++||.+++++.++...+
T Consensus 197 dL~~dp~~~~~~i~~FLG~~~~~~~l~~iv~ 227 (297)
T 1aqu_A 197 DMKEDIRREVVKLIEFLERKPSAELVDRIIQ 227 (297)
T ss_dssp HHHHCHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3566788888888889999998876655433
No 26
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=20.33 E-value=56 Score=20.27 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCCcccceEEEEecCC---ceeeCHHHH
Q psy3916 13 EGSRTTPSVVAFTKDG---ERLVGTPAR 37 (103)
Q Consensus 13 ~g~r~~pS~V~f~~~~---~~~vG~~A~ 37 (103)
.|=+.+|+.+.|. +| .+++|...+
T Consensus 87 ygV~sIPTlilFk-~G~~v~~~~G~~~k 113 (140)
T 2qgv_A 87 FGAFRFPATLVFT-GGNYRGVLNGIHPW 113 (140)
T ss_dssp HTCCSSSEEEEEE-TTEEEEEEESCCCH
T ss_pred cCCccCCEEEEEE-CCEEEEEEecCCCH
Confidence 3557899999997 56 445775443
Done!