RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3916
(103 letters)
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 173 bits (440), Expect = 1e-54
Identities = 52/97 (53%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60
M+G +V+EN+EG RTTPS++A+T+DGE LVG PA+RQAVTN NT +A KRLIGRRF
Sbjct: 19 MDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQ 78
Query: 61 DPEIKKDMKNLSYKIVRASNGDAWVQ--GKNIRISEV 95
D E+++D+ + +KI+ A NGDAWV+ G+ + ++
Sbjct: 79 DEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI 115
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 167 bits (424), Expect = 1e-50
Identities = 51/86 (59%), Positives = 69/86 (80%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60
M+G +V+EN+EG RTTPS++A+T+DGE LVG PA+RQAVTN NT +A KRLIGRRF
Sbjct: 19 MDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQ 78
Query: 61 DPEIKKDMKNLSYKIVRASNGDAWVQ 86
D E+++D+ + +KI+ A NGDAWV+
Sbjct: 79 DEEVQRDVSIMPFKIIAADNGDAWVE 104
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 136 bits (346), Expect = 1e-39
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60
+ + ++I N +G+RTTPS VAFT D ERL+G A+ Q N NT + KRLIGRRFD
Sbjct: 21 FQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFD 79
Query: 61 DPEIKKDMKNLSYKIV-RASNGDAWVQGKN 89
D ++ DMK+ + +V A V+ K
Sbjct: 80 DAVVQSDMKHWPFMVVNDAGRPKVQVEYKG 109
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 133 bits (337), Expect = 3e-39
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60
M+ + +++ N +G+R TPS VAFT D ERL+G A+ Q N NT + KRLIG +++
Sbjct: 35 MKNGKTEILANEQGNRITPSYVAFT-DDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYN 93
Query: 61 DPEIKKDMKNLSYKIVRASNGDAWV 85
D ++KD+K+L + +V A
Sbjct: 94 DRSVQKDIKHLPFNVVNKDGKPAVE 118
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 131 bits (332), Expect = 2e-38
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60
+ + ++I N +G+RTTPS VAFT D ERL+G A+ Q N NT + KRLIGR+F+
Sbjct: 40 FQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFE 98
Query: 61 DPEIKKDMKNLSYKIV-RASNGDAWVQGK 88
D ++ DMK+ +++V V+ K
Sbjct: 99 DATVQSDMKHWPFRVVSEGGKPKVQVEYK 127
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 128 bits (324), Expect = 3e-36
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 60
+ ++ N +R+TPSVV F R +G + + +N NT KR+IG +
Sbjct: 19 ARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYH 77
Query: 61 DPEIKKDMKNLSYKIVRASNGDAWVQ 86
P+ +++ K+ + K+V + +
Sbjct: 78 HPDFEQESKHFTSKLVELDDKKTGAE 103
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus
kaustophilus HTA426}
Length = 509
Score = 109 bits (275), Expect = 9e-30
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 1 MEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRF 59
+EG + KVI N EG+RTTPSVVAF K+GERLVG A+RQA+TN NT + KR +G +
Sbjct: 19 LEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITN-PNTIISIKRHMGTDY 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.34
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 31 LVGTPARRQAVT--NSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVR--ASNGDAWVQ 86
+ V F+ + + + ++ L Y+I S D
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSD---H 219
Query: 87 GKNI--RISEVVEVL 99
NI RI + L
Sbjct: 220 SSNIKLRIHSIQAEL 234
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 28.2 bits (62), Expect = 0.40
Identities = 12/69 (17%), Positives = 18/69 (26%)
Query: 7 KVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKK 66
KVI PS A T+ +G + F K G P+
Sbjct: 34 KVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDG 93
Query: 67 DMKNLSYKI 75
+ +
Sbjct: 94 RLASKEAFP 102
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 26.7 bits (58), Expect = 1.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 54 LIGRRFDDPEIKKDMKNLS 72
L R++ D E+++D+ NL
Sbjct: 327 LSERKYSDEELRQDISNLK 345
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 26.0 bits (58), Expect = 2.7
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 13 EGSRTTPSVVAFTKDGERLVGTPARRQAVT-NSANTFYATKRLI--GRRFD-----DPEI 64
E S P R+VG A N+A F +RL+ G + D DP
Sbjct: 344 EVSLDAPKFTLIELQKGRIVG------ATCVNNARDFAPLRRLLAVGAKPDRAALADPAT 397
Query: 65 KKDMKNL 71
D++ L
Sbjct: 398 --DLRKL 402
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 26.0 bits (58), Expect = 2.8
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 13 EGSRTTPSVVAFTKDGERLVGTPARRQAVT-NSANTFYATKRLI--GRRFD-----DPEI 64
GS P F G+R++ T N F +K++I + D +
Sbjct: 353 RGSLAQPDFSVFYLQGDRVLA------VDTVNRPVEFNQSKQIITDRLPVEPNLLGDESV 406
Query: 65 KKDMKNL 71
+K +
Sbjct: 407 --PLKEI 411
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 25.6 bits (57), Expect = 3.6
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 16/67 (23%)
Query: 13 EGSRTTPSVVAFTKDGERLVGTPARRQAVT-NSANTFYATKRLI--GRRFD-----DPEI 64
G T S G ++V N + K+L+ + D +
Sbjct: 355 RGDPATRSFSVVYLKGGKVVA------LDCVNMVKDYVQGKKLVEARAQIAPEQLADAGV 408
Query: 65 KKDMKNL 71
+K +
Sbjct: 409 --PLKEM 413
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 25.5 bits (56), Expect = 3.9
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 33 GTPARRQAVTNSANTFYATKRLIGRRFDD-PEIKKDMKNLSYKIVRASNGDAWVQGKNIR 91
P + ++ ++ TK R ++ +K L Y++ ++G+ Q + I
Sbjct: 70 DLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDGNPVKQWEKIL 129
Query: 92 IS 93
Sbjct: 130 RL 131
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 25.4 bits (56), Expect = 3.9
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 11 NSEGSRTTPSVVAFTKDGERLVG 33
+ S+ F+ G+ L
Sbjct: 347 RDPNAAGIISLNKFSPTGDVLAS 369
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 24.8 bits (54), Expect = 6.8
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 6 AKVIENSEGSRTTPSVVAFTKDGERLVGTP 35
++ E +T + + VGT
Sbjct: 211 VTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 24.6 bits (54), Expect = 7.3
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 6 AKVIENSEGSRTTPSVVAFTKDGERLVGTP 35
++ E +T + + VGT
Sbjct: 165 VTAMDQDEEEQTVLTPMPAYARHTGQVGTK 194
>3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F
(pngase F), structural GENO joint center for structural
genomics; 2.30A {Bacteroides fragilis nctc 9343}
Length = 397
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 53 RLIGRRFDDPEIKKDMKNLSYKIVRASNGDAW 84
R+I ++ PE K+++ ++S K+ ASNGD W
Sbjct: 50 RIILKKITLPEYKRNV-SVSLKVTLASNGDRW 80
>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A
{Venezuelan equine encephalitis virus} SCOP: b.47.1.3
PDB: 1ep6_A 3j0c_C
Length = 157
Score = 23.9 bits (51), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 12 SEGSRTTPSVVAFTKDGERLVGTP 35
+EGSRT SVV + + G + TP
Sbjct: 128 NEGSRTALSVVMWNEKGVTVKYTP 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.365
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,549,022
Number of extensions: 81960
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 30
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.5 bits)