BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3917
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V40|A Chain A, Human Adenylosuccinate Synthetase Isozyme 2 In Complex
With Gdp
Length = 459
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/181 (56%), Positives = 125/181 (69%), Gaps = 5/181 (2%)
Query: 38 PKLHKVTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPS 97
P ++VTVVLGAQWGDEGKGK CRCQGGNNAGHTVVVDS EYDFHL+PS
Sbjct: 28 PGGNRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPS 87
Query: 98 GIINPKAKSIIGNGVVIHLPGLFDELQKN--ENKGLTGWKDRLLISDRAHLVFDFHQQVD 155
GIINP + IGNGVVIHLPGLF+E +KN + KGL GW+ RL+ISDRAH+VFDFHQ D
Sbjct: 88 GIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAAD 147
Query: 156 GLQE---AEXXXXXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQR 212
G+QE E P YSSKA R+G+R+ DL+ DF+ F+E+ + ++ +
Sbjct: 148 GIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQYKS 207
Query: 213 I 213
I
Sbjct: 208 I 208
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 67/89 (75%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE+D+EIG+ LQ G E GVTT RKRRCGWLD+ LLKY M+NG+T L +TKLDILD F
Sbjct: 314 TEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFT 373
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIK+GVAYK G+ + + P+N L KVE
Sbjct: 374 EIKVGVAYKLDGEIIPHIPANQEVLNKVE 402
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/195 (56%), Positives = 128/195 (65%), Gaps = 5/195 (2%)
Query: 42 KVTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
+VTVVLGAQWGDEGKGK RCQGGNNAGHTVVVD EYDFHL+PSGIIN
Sbjct: 32 RVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIIN 91
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
KA S IGNGVVIHLPGLF+E +KNE KGL W+ RL+ISDRAHLVFDFHQ VDGLQE +
Sbjct: 92 TKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQ 151
Query: 162 XXXXXXXXXXXXXX---PAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGN--E 216
P YSSKA R G+RI DLL DF+ F+ + + + Q + E
Sbjct: 152 RQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPTLE 211
Query: 217 VGVTTKRKRRCGWLD 231
+ V + KR G+ +
Sbjct: 212 IDVEGQLKRLKGFAE 226
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 68/89 (76%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE+ +EIGD LQ G+E GVTT RKRRCGWLD+ +L+Y MVNG+T L +TKLDILD
Sbjct: 312 TEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLS 371
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIK+G++YK +GK + YFP+N L KVE
Sbjct: 372 EIKVGISYKLNGKRIPYFPANQEILQKVE 400
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 LHKVTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVV-VDSTEYDFHLVPSG 98
L +V+ VLG QWGDEGKGK RCQGG NAGHT+ + ++ HLVPSG
Sbjct: 18 LSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSG 77
Query: 99 IINPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQ 158
I+N +IGNGVV+HLPGLF E+ E+ G++ K R+L+SDRAHL+FDFHQ+VDGL+
Sbjct: 78 ILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVS-CKGRILVSDRAHLLFDFHQEVDGLR 136
Query: 159 EAEXXXXXXXXXXXXXXPAYSSKATRNGIRIADL 192
E+E PAYSSK RNGIR+ DL
Sbjct: 137 ESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDL 170
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE GD L+ G E G TT R RRCGWLDI LK++ +NG+ L +TKLD+L
Sbjct: 298 TENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLN 357
Query: 260 EIKIGVAYKRH-GKTLHYFPSNSSELAK--VEYYVL 292
EI++GVAYKR G + FP + L + VEY VL
Sbjct: 358 EIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVL 393
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 40 LHKVTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVV-VDSTEYDFHLVPSG 98
L V+ VLG+QWGDEGKGK RCQGG NAGHT+ + ++ HLVPSG
Sbjct: 17 LSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSG 76
Query: 99 IINPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQ 158
I++ ++GNG VIH+PG F E+ ++ G++ R+L+SDRAHL+FD HQ VDGL+
Sbjct: 77 ILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVS-CDGRILVSDRAHLLFDLHQTVDGLR 135
Query: 159 EAEXXXXXXXXXXXXXXPAYSSKATRNGIRIADL 192
EAE P YSSK TRNG+R+ DL
Sbjct: 136 EAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDL 169
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E GD L++ G E G TT R RRCGWLDI LKY +NG++ L +TKLD+L
Sbjct: 297 TELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLP 356
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE--YYVL 292
EIK+GV+Y + G+ L FP + L +V+ Y VL
Sbjct: 357 EIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVL 392
>pdb|1P9B|A Chain A, Structure Of Fully Ligated Adenylosuccinate Synthetase
From Plasmodium Falciparum
Length = 442
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 43 VTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINP 102
V +LGAQWGDEGKGK CR GG NAGHT+ V+ +Y HL+P G++
Sbjct: 16 VVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLYD 75
Query: 103 KAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEX 162
S++GNG+VIH+ L +E++ K L DRL +S++AH++FD HQ +D +QE +
Sbjct: 76 NNISVLGNGMVIHVKSLMEEIESVGGKLL----DRLYLSNKAHILFDIHQIIDSIQETKK 131
Query: 163 XXXXXX--XXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGN 215
P YS+KA+R GIR+ L +F F S++ D L + N
Sbjct: 132 LKEGKQIGTTKRGIGPCYSTKASRIGIRLGT-LKNFENFKNMYSKLIDHLMDLYN 185
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 199 FTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTF 258
TE ++++G L+ G+E G TTKR RRCGWLDIP+L Y +N + +TKLD+L
Sbjct: 287 LTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGL 346
Query: 259 EEIKIGVAYK 268
EEI + V +K
Sbjct: 347 EEILLCVNFK 356
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VVLG QWGDEGKGK R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKARGA 123
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
PAY K R G+R+ DL D F EK E+
Sbjct: 124 KAIGTTGRGIGPAYEDKVARRGLRVGDLF-DKETFAEKLKEV 164
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L + GNE G TT R+RR GWLD ++ +N + C+TKLD+LD +
Sbjct: 280 TELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLK 339
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE 288
E+K+ VAY+ G+ + P + + VE
Sbjct: 340 EVKLCVAYRMPDGREVTTTPLAADDWKGVE 369
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VVLG QWGDEGKGK R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 6 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 65
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 66 TSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKARGA 124
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
PAY K R G+R+ DL D F EK E+
Sbjct: 125 KAIGTTGRGIGPAYEDKVARRGLRVGDLF-DKETFAEKLKEV 165
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L + GNE G TT R+RR GWLD ++ +N + C+TKLD+LD +
Sbjct: 281 TELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLK 340
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE 288
E+K+ VAY+ G+ + P + + VE
Sbjct: 341 EVKLCVAYRMPDGREVTTTPLAADDWKGVE 370
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VVLG QWGDEGKGK R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKARGA 123
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
PAY K R G+R+ DL D F EK E+
Sbjct: 124 KAIGTTGRGIGPAYEDKVARRGLRVGDLF-DKETFAEKLKEV 164
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L + GNE G TT R+RR GWLD ++ +N + C+TKLD+LD +
Sbjct: 280 TELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLK 339
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE 288
E+K+ VAY+ G+ + P + + VE
Sbjct: 340 EVKLCVAYRMPDGREVTTTPLAADDWKGVE 369
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VVLG QWGDEGKGK R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKARGA 123
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
PAY K R G+R+ DL D F EK E+
Sbjct: 124 KAIGTTGRGIGPAYEDKVARRGLRVGDLF-DKETFAEKLKEV 164
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L + GNE G TT +RR GWLD ++ +N + C+TKLD+LD +
Sbjct: 280 TELFDETGEFLCKQGNEFGATTGLRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLK 339
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE 288
E+K+ VAY+ G+ + P + + VE
Sbjct: 340 EVKLCVAYRMPDGREVTTTPLAADDWKGVE 369
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VVLG QWGDEG+GK R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 5 VVLGTQWGDEGQGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKARGA 123
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
PAY K R G+R+ DL D F EK E+
Sbjct: 124 KAIGTTGRGIGPAYEDKVARRGLRVGDLF-DKETFAEKLKEV 164
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L + GNE G TT R+RR GWLD ++ +N + C+TKLD+LD +
Sbjct: 280 TELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLK 339
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE 288
E+K+ VAY+ G+ + P + + VE
Sbjct: 340 EVKLCVAYRMPDGREVTTTPLAADDWKGVE 369
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VVLG QWGDEGKGK R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKARGA 123
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
PAY K G+R+ DL D F EK E+
Sbjct: 124 KAIGTTGRGIGPAYEDKVALRGLRVGDLF-DKETFAEKLKEV 164
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L + GNE G TT R+RR GWLD ++ +N + C+TKLD+LD +
Sbjct: 280 TELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLK 339
Query: 260 EIKIGVAYKR-HGKTLHYFPSNSSELAKVE 288
E+K+ VAY+ G+ + P + + VE
Sbjct: 340 EVKLCVAYRMPDGREVTTTPLAADDWKGVE 369
>pdb|3HID|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Yersinia Pestis Co92
Length = 432
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 40 LHKVTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGI 99
+ K VVLG QWGDEGKGK R QGG+NAGHT+V++ + HL+PSGI
Sbjct: 1 MGKNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGI 60
Query: 100 INPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQE 159
+ SIIGNGVV+ L E+ + E +G+ ++RLL+S+ L+ +H +D +E
Sbjct: 61 LRENVISIIGNGVVLAPDALMKEMTELEARGVP-VRERLLLSEACPLILPYHVALDNARE 119
Query: 160 AEXXXXXXXXXXXXXXPAYSSKATRNGIRIADLL 193
PAY K R G+R++DL
Sbjct: 120 KARGAKAIGTTGRGIGPAYEDKVARRGLRVSDLF 153
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE + E G+ L++ GNE G TT R RR GWLDI ++ +N + C+TKLD+LD +
Sbjct: 281 TELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLDGLK 340
Query: 260 EIKIGVAYK 268
E+K+ V Y+
Sbjct: 341 EVKLCVGYR 349
>pdb|3R7T|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Campylobacter Jejuni
Length = 419
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 42 KVTVVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
K +++G QWGDEGKGK CR GG+NAGHT+ V+ Y HL PSG+++
Sbjct: 6 KADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTIWVNGVRYALHLXPSGVLH 65
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
P+ +IIGNGVV+ L E + EN K RL ISDRAHL H +D +E
Sbjct: 66 PRCINIIGNGVVVSPEVLIAEXAQFEN-----LKGRLYISDRAHLNLKHHSLIDIAKEKL 120
Query: 162 XXXXXXXXXXXXXXPAYSSKATRNGIRIADLL 193
P+Y+ K R G R+ +LL
Sbjct: 121 KGKNAIGTTGKGIGPSYADKINRTGHRVGELL 152
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 190 ADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCI 249
A +G+ TE E G+K+ +IG E+GV+T RKRRCGW D ++YT+ +NG L +
Sbjct: 269 ATRVGNGAFPTEDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSL 328
Query: 250 TKLDILDTFEEIKIGVAYKRHGKTLHYFPSN 280
KLD+LD FE+IKI AY+ G + Y PS+
Sbjct: 329 XKLDVLDGFEKIKICRAYEYKGXEIDYIPSD 359
>pdb|3UE9|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|B Chain B, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|C Chain C, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|D Chain D, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
Length = 452
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VV+G QWGDEGKGK R QGG+NAGHT+++ + L+PSGI+
Sbjct: 19 VVVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLIIGGKKTILRLIPSGIMREGV 78
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEXXX 164
IGNGVV+ LF E+ + E GL+ ++RL IS+ L+ +H +D +EA
Sbjct: 79 ACYIGNGVVLSPEALFKEIGELEEAGLS-VRERLFISEATTLILPYHIAIDQAREARKGA 137
Query: 165 XXXXXXXXXXXPAYSSKATRNGIRIADLLGDFNVFTEKDSE 205
PAY K R +R+ DL D F ++ E
Sbjct: 138 GKIGTTGRGIGPAYEDKVGRRALRVQDLF-DARTFADRLRE 177
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 202 KDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFEEI 261
+ +IG L +G E G T R RR GWLD L+ + +NG + LC+TKLD+LD +E+
Sbjct: 304 RQDQIGITLANVGKEFGSVTGRPRRTGWLDAAALRRSIQINGVSGLCMTKLDVLDGLDEV 363
Query: 262 KIGVAYKRHGKTLHYFPSNSSELAKVE 288
K+ V YK G+ P ++E+A+ E
Sbjct: 364 KLCVGYKIDGEDADLLPRGAAEVARCE 390
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 45 VVLGAQWGDEGKGKXXXXXXXXXXXXCRCQGG--NNAGHTVVVDSTEYDFHLVPSGIINP 102
+V+G QWGDEGKG +GG NAGH+VV++ +Y +P+G +
Sbjct: 5 IVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTGFMQT 64
Query: 103 KAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVD 155
KA+ +IG GV++ F EL++ ++ + KDR+ I R ++ + H+Q+D
Sbjct: 65 KARLLIGAGVLVDPEVFFHELEQLKDFNV---KDRVGIDYRCAIIEEKHKQLD 114
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILD 256
TE E D+L + E G T R+RR GW D + +Y++ +NG T L +T LD D
Sbjct: 235 TEMPMEEADRLGLV--EYGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLDKYD 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,216,259
Number of Sequences: 62578
Number of extensions: 318797
Number of successful extensions: 591
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 33
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)