Query psy3917
Match_columns 295
No_of_seqs 111 out of 1085
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:41:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj2_A Adenylosuccinate synthe 100.0 1E-103 5E-108 769.7 18.9 263 28-292 6-391 (443)
2 3hid_A Adenylosuccinate synthe 100.0 1E-102 3E-107 762.8 18.2 248 43-292 4-374 (432)
3 3ue9_A Adenylosuccinate synthe 100.0 7E-103 2E-107 766.8 16.0 252 39-292 13-394 (452)
4 2v40_A Adenylosuccinate synthe 100.0 4E-102 1E-106 761.5 19.1 257 36-292 26-406 (459)
5 1p9b_A Adenylosuccinate synthe 100.0 1E-101 5E-106 755.1 19.5 250 38-292 11-384 (442)
6 3r7t_A Adenylosuccinate synthe 100.0 6E-101 2E-105 747.7 19.7 244 40-292 3-368 (419)
7 2d7u_A Adenylosuccinate synthe 100.0 5.3E-87 1.8E-91 634.5 13.0 216 41-267 1-298 (339)
8 1qp2_A Protein (PSAE protein); 30.1 13 0.00046 27.9 0.5 32 51-82 18-49 (70)
9 2kca_A Bacteriophage SPP1 comp 27.7 75 0.0026 23.7 4.5 31 67-97 58-88 (109)
10 2wh6_B BCL-2-like protein 11; 20.2 22 0.00075 21.8 -0.0 16 206-221 8-23 (26)
No 1
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A {Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Probab=100.00 E-value=1.5e-103 Score=769.67 Aligned_cols=263 Identities=51% Similarity=0.890 Sum_probs=242.3
Q ss_pred ccCCCCCCCCCCCceEEEEEcCCcccCCchhhHHhhccCCcEEEecCCCCCCccEEE-ECCEEEEEeeccceeecCCcee
Q psy3917 28 TMNGNKTGENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVV-VDSTEYDFHLVPSGIINPKAKS 106 (295)
Q Consensus 28 ~~~~~~~~~~~~~m~~~vVvG~QwGDEGKGKivD~La~~~dvVvRfnGG~NAGHTVv-~~g~k~~l~llPSGil~~~~~~ 106 (295)
.||.+.+.+.+.++++++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+++|++.|
T Consensus 6 ~~~~~~~~~~~~~~~v~vVvG~QWGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~ 85 (443)
T 1dj2_A 6 SAATESLGRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTC 85 (443)
T ss_dssp ---------CTTSCSEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEECSSCCEEEESSSCGGGGSTTCEE
T ss_pred CCCCCCCCCCCCccceEEEEeCCcCCCCCceEEeeeccCCCEEEecCccCCCCcEEEEeCCEEEEEEccCccccCCCceE
Confidence 677777778777778889999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred EEcCCeEechHHHHHHHHHHHhCCCCCCCCCEEEeCCceecchhhhhhhchhhhhhCCCCcCCCCCCccccccccccccC
Q psy3917 107 IIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNG 186 (295)
Q Consensus 107 ~IG~GvVvdp~~l~~Ei~~L~~~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~g~~~IGTTg~GIGpay~dK~~R~g 186 (295)
+||||||+||++|++||+.|+++|++ +.+||+||+|||||+|||+++|+++|..+|.++||||||||||||+||++|+|
T Consensus 86 vIGnGvVvdp~~L~~Ei~~L~~~G~~-v~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~IGTTgrGIGPaY~dK~~R~g 164 (443)
T 1dj2_A 86 VIGNGVVVHLPGLFKEIDGLESNGVS-CKGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNG 164 (443)
T ss_dssp EECTTCEECHHHHHHHHHHHHTTTCC-CTTTEEEESSSEECCHHHHHHHHHHHHHSCSCCCCCCSCCHHHHHHHHHHTCC
T ss_pred EECCcEEEcHHHHHHHHHHHHHcCCC-CCCCEEEcCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCcHHHhHhhhhccC
Confidence 99999999999999999999999974 45899999999999999999999999999989999999999999999999999
Q ss_pred ceeeeccCChhhhhc-----------------------------------------------------------------
Q psy3917 187 IRIADLLGDFNVFTE----------------------------------------------------------------- 201 (295)
Q Consensus 187 iRv~DL~~~~~~~~~----------------------------------------------------------------- 201 (295)
||++||+ |++.|++
T Consensus 165 iRv~DL~-d~~~~~~kl~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~vLfEGAQG 243 (443)
T 1dj2_A 165 IRVGDLR-HMDTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQA 243 (443)
T ss_dssp CBGGGGG-CTTTHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHTTTEECHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cEeeccc-CHHHHHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCeEEEEecch
Confidence 9999998 4332211
Q ss_pred --------------------------------------------------------ccchHhHHHhhcCCccccccCCcc
Q psy3917 202 --------------------------------------------------------KDSEIGDKLQRIGNEVGVTTKRKR 225 (295)
Q Consensus 202 --------------------------------------------------------l~~e~g~~lr~~G~E~Gt~TgRpR 225 (295)
+++|+|+.||++|+||||||||||
T Consensus 244 ~lLDiD~GtYPyVTSSnttagga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~l~~~G~E~GttTGR~R 323 (443)
T 1dj2_A 244 TMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPR 323 (443)
T ss_dssp GGGCTTTSSTTSSCSSCCSTHHHHHTTTCCTTTCCCEEEEEESEEEESSSSCCTTBCCSHHHHHHHHHHTCBCTTTCCBC
T ss_pred hhhhhccCcCcCCCCCcchHhhhhhccCCCcccCCeEEEEEEecCCcccCCCCCCcCCchhhHHhhhcCCeeCCCCCCCc
Confidence 667889999999999999999999
Q ss_pred ccccchHHHHHHhhHhcCcceEEeecccccCCCCceeEEEEEee-CCEEeecCCCCccccCCcEEEEE
Q psy3917 226 RCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKR-HGKTLHYFPSNSSELAKVEYYVL 292 (295)
Q Consensus 226 R~GwlD~~~lrya~~ing~~~lalTklDvL~~~~~ikic~~Y~~-~G~~~~~~P~~~~~l~~~epvy~ 292 (295)
||||||++++|||+++||+|+||||||||||+|++||||++|++ ||+++++||++++.|++|||+|.
T Consensus 324 RcGWfD~v~lrya~~inG~t~lalTkLDvLd~~~~ikicv~Y~~~~G~~~~~~P~~~~~l~~~~PvYe 391 (443)
T 1dj2_A 324 RCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYE 391 (443)
T ss_dssp EEEEEEHHHHHHHHHHHTCSEEEEECGGGGGGCSEEEEEEEEECSSSCBCCSCCSCHHHHHHCEEEEE
T ss_pred cCCcchHHHHHHHHHHcCCCeEEEECcCcCCCCCceeEEEEEEcCCCeEeeeCCCChHHhccceEEEE
Confidence 99999999999999999999999999999999999999999999 99999999999999999999995
No 2
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence associated factor, PURA, purine ribonucleotide biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92} SCOP: c.37.1.10 PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A* 1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A* 1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A* ...
Probab=100.00 E-value=1e-102 Score=762.84 Aligned_cols=248 Identities=42% Similarity=0.757 Sum_probs=231.1
Q ss_pred EEEEEcCCcccCCchhhHHhhccCCcEEEecCCCCCCccEEEECCEEEEEeeccceeecCCceeEEcCCeEechHHHHHH
Q psy3917 43 VTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVIHLPGLFDE 122 (295)
Q Consensus 43 ~~vVvG~QwGDEGKGKivD~La~~~dvVvRfnGG~NAGHTVv~~g~k~~l~llPSGil~~~~~~~IG~GvVvdp~~l~~E 122 (295)
.++|||+|||||||||||||||+++|+|||||||+||||||+++|++|+|||||||+++|++.|+||||||+||++|++|
T Consensus 4 ~~vVvG~QwGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~g~k~~lhliPSGil~~~~~~vIGnGvVvdp~~l~~E 83 (432)
T 3hid_A 4 NVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVISIIGNGVVLAPDALMKE 83 (432)
T ss_dssp CEEEEESSSSCSCHHHHHHHHHTTCSEEEECSBCSCCCEEEEETTEEEEESSSCTTTTSTTCEEEECTTBCBCHHHHHHH
T ss_pred cEEEEcCCcccCCCceeeeeecCcCCEEEEcCCcCCCCCeEEECCEEEEEEecCceecCCCCeEEEcCCEEEcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCEEEeCCceecchhhhhhhchhhhhhCCCCcCCCCCCccccccccccccCceeeeccCChhhhhc-
Q psy3917 123 LQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTE- 201 (295)
Q Consensus 123 i~~L~~~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~g~~~IGTTg~GIGpay~dK~~R~giRv~DL~~~~~~~~~- 201 (295)
|+.|+++|++. .+||+||+|||||+|||+++|+++|..+|.++||||||||||||+||++|+|||++||+ |++.|++
T Consensus 84 i~~L~~~Gv~~-~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~iGTTgrGIGPaY~dK~~R~giRv~DL~-~~~~~~~k 161 (432)
T 3hid_A 84 MTELEARGVPV-RERLLLSEACPLILPYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVSDLF-NKETFAIK 161 (432)
T ss_dssp HHHHHHTTCCH-HHHEEECTTCBBCCHHHHHHHHHHHHTCC--------TTHHHHHHHHHHTCSCBGGGGG-SHHHHHHH
T ss_pred HHHHHHcCCCC-CCCEEECCCceECChHHHHhhhhhHhhcCCCCcCCCCCCcHHHhhhhccccCceeehhc-CHHHHHHH
Confidence 99999999964 37999999999999999999999999999999999999999999999999999999999 5555432
Q ss_pred --------------------------------------------------------------------------------
Q psy3917 202 -------------------------------------------------------------------------------- 201 (295)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (295)
T Consensus 162 l~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~iLfEGAQG~lLDiD~GtYP~VTS 241 (432)
T 3hid_A 162 LKEIVEYHNFQLVHYYKEAAVDYQKVLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYPYVTS 241 (432)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTSCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHCCCeEEEEecchhhhccccCcCCCcCC
Confidence
Q ss_pred -----------------------------------------ccchHhHHHhhcCCccccccCCccccccchHHHHHHhhH
Q psy3917 202 -----------------------------------------KDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSM 240 (295)
Q Consensus 202 -----------------------------------------l~~e~g~~lr~~G~E~Gt~TgRpRR~GwlD~~~lrya~~ 240 (295)
+++|+|+.||++|+|||+||||||||||||++++|||++
T Consensus 242 Snt~agga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~G~tTGR~RRcGW~D~v~lrya~~ 321 (432)
T 3hid_A 242 SNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQ 321 (432)
T ss_dssp SCCSGGGHHHHHCCCGGGCCEEEEEEESEEEECSSSCCTTBCCSHHHHHHHHHTTCCCSSTTCCCEEEEEEHHHHHHHHH
T ss_pred CCcchhhHhhccCCCchhcceEEEEEEECcccccCCCCCCccCcchHHHHHhcCCccCCcCCCCccccchhHHHHHHHHH
Confidence 667899999999999999999999999999999999999
Q ss_pred hcCcceEEeecccccCCCCceeEEEEEee-CCEEeecCCCCccccCCcEEEEE
Q psy3917 241 VNGYTKLCITKLDILDTFEEIKIGVAYKR-HGKTLHYFPSNSSELAKVEYYVL 292 (295)
Q Consensus 241 ing~~~lalTklDvL~~~~~ikic~~Y~~-~G~~~~~~P~~~~~l~~~epvy~ 292 (295)
+||+|+||||||||||+|++||||++|++ +|+++++||++++.|++|||+|.
T Consensus 322 inG~t~lalTkLDvLd~~~~ikvcv~Y~~~~G~~~~~~P~~~~~l~~~~pvYe 374 (432)
T 3hid_A 322 INSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYE 374 (432)
T ss_dssp HHTCCEEEEECGGGGTTCSEEEEEEEEECTTSCEESSCCCTTTCSTTCEEEEE
T ss_pred hcCCCeEEEecceecCCCCceeEEEEEEcCCCeEEeeCCCCHHHhCCceEEEE
Confidence 99999999999999999999999999999 99999999999999999999996
No 3
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245, IMP-aspartate ligase, struc genomics; 1.95A {Burkholderia thailandensis}
Probab=100.00 E-value=7.2e-103 Score=766.82 Aligned_cols=252 Identities=42% Similarity=0.730 Sum_probs=226.4
Q ss_pred CCceEEEEEcCCcccCCchhhHHhhccCCcEEEecCCCCCCccEEEECCEEEEEeeccceeecCCceeEEcCCeEechHH
Q psy3917 39 KLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVIHLPG 118 (295)
Q Consensus 39 ~~m~~~vVvG~QwGDEGKGKivD~La~~~dvVvRfnGG~NAGHTVv~~g~k~~l~llPSGil~~~~~~~IG~GvVvdp~~ 118 (295)
..|+.++|||+|||||||||||||||+++|+|||||||+||||||+++|++|+|||||||+++|++.|+||||||+||++
T Consensus 13 ~~M~~~vVvG~QwGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~g~k~~lhllPSGil~~~~~~vIGnGvVvdp~~ 92 (452)
T 3ue9_A 13 TPGRNVVVVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLIIGGKKTILRLIPSGIMREGVACYIGNGVVLSPEA 92 (452)
T ss_dssp CTTCCEEEEESSSSCSCHHHHHHHHHTTCSEEEECSBCCC--CC----CCCCCCSSSCGGGGSTTCEEEECTTBEECHHH
T ss_pred cccceEEEEeCCcccCCCceeeeeecCcCCEEEEcCCcCCCCceEEECCEEEEEEecCceeccCCCcEEEcCCEEEcHHH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEeCCceecchhhhhhhchhhhhhCCCCcCCCCCCccccccccccccCceeeeccCChhh
Q psy3917 119 LFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNV 198 (295)
Q Consensus 119 l~~Ei~~L~~~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~g~~~IGTTg~GIGpay~dK~~R~giRv~DL~~~~~~ 198 (295)
|++||+.|+++|++. .+||+||+|||||+|||+++|+++|..+|.++||||||||||||+||++|+|||++||+ |++.
T Consensus 93 l~~Ei~~L~~~Gv~~-~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~iGTTgrGIGPaY~dK~~R~giRv~DL~-d~~~ 170 (452)
T 3ue9_A 93 LFKEIGELEEAGLSV-RERLFISEATTLILPYHIAIDQAREARKGAGKIGTTGRGIGPAYEDKVGRRALRVQDLF-DART 170 (452)
T ss_dssp HHHHHHHHHHTTCCC-GGGEEEETTCEECCHHHHHHHHHHHHC----------CCHHHHHHHHHTTCCCBGGGGG-CHHH
T ss_pred HHHHHHHHHHcCCCC-CCCEEECCCceECCHHHHHhhhhhhhhccCCccccCCCCcHHHhhhhccccCceeehhc-CHHH
Confidence 999999999999964 48999999999999999999999999999999999999999999999999999999999 5555
Q ss_pred hhc-----------------------------------------------------------------------------
Q psy3917 199 FTE----------------------------------------------------------------------------- 201 (295)
Q Consensus 199 ~~~----------------------------------------------------------------------------- 201 (295)
|++
T Consensus 171 ~~~kl~~~~~~~~~~l~~~~~~~~~d~e~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~ILfEGAQG~lLDiD~GtYP 250 (452)
T 3ue9_A 171 FADRLRENLDFHNFVLTQYLGGAAVDFQATLDTMLGYADRLRPMVADVSRRLYEENHAGRNLLFEGAQGTLLDIDHGTYP 250 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHHHHHTTHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHcCCcEEEEecchhhhccccCcCC
Confidence 432
Q ss_pred ---------------------------------------------ccc--------hHhHHHhhcCCccccccCCccccc
Q psy3917 202 ---------------------------------------------KDS--------EIGDKLQRIGNEVGVTTKRKRRCG 228 (295)
Q Consensus 202 ---------------------------------------------l~~--------e~g~~lr~~G~E~Gt~TgRpRR~G 228 (295)
+++ |+|+.||++|+|||+|||||||||
T Consensus 251 yVTSSnt~agga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~~~~~~~~~e~g~~Lr~~G~E~GttTGR~RRcG 330 (452)
T 3ue9_A 251 FVTSSNCVAGAAAAGAGVGPQKLNYILGITKAYCTRVGSGPFPSELYDADNPSRQDQIGITLANVGKEFGSVTGRPRRTG 330 (452)
T ss_dssp SSCSSCCSTTHHHHHHTCCGGGCCEEEEEEESEEEECSSSCCTTEEECTTCTTCBCHHHHHHHHHTTCBCTTTCCBCEEE
T ss_pred CcCCCCcchhhHhhccCCCchhcceEEEEEEeccccccCCCCCccccccccccccccHHHHHhhcCCCcCCcCCCCccCc
Confidence 667 899999999999999999999999
Q ss_pred cchHHHHHHhhHhcCcceEEeecccccCCCCceeEEEEEeeCCEEeecCCCCccccCCcEEEEE
Q psy3917 229 WLDIPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKRHGKTLHYFPSNSSELAKVEYYVL 292 (295)
Q Consensus 229 wlD~~~lrya~~ing~~~lalTklDvL~~~~~ikic~~Y~~~G~~~~~~P~~~~~l~~~epvy~ 292 (295)
|||++++|||+++||+|+|||||||+||+|++||||++|+++|+++++||++++.|++|||+|.
T Consensus 331 W~D~v~lrya~~inG~t~lalTkLDvLd~~~~ikvcvaY~~~G~~~~~~P~~~~~l~~~~pvYe 394 (452)
T 3ue9_A 331 WLDAAALRRSIQINGVSGLCMTKLDVLDGLDEVKLCVGYKIDGEDADLLPRGAAEVARCEPVYE 394 (452)
T ss_dssp EEEHHHHHHHHHHHTCCEEEEECGGGGTTCSEEEEEEEEEETTEEECSCCSSHHHHHHCEEEEE
T ss_pred cccHHHHHHHHHHcCCCeEEEecchhhcCCCceeEEEEEecCCEEEecCCCCHHHhCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 4
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A*
Probab=100.00 E-value=4.2e-102 Score=761.54 Aligned_cols=257 Identities=67% Similarity=1.123 Sum_probs=232.3
Q ss_pred CCCCCceEEEEEcCCcccCCchhhHHhhccCCcEEEecCCCCCCccEEEECCEEEEEeeccceeecCCceeEEcCCeEec
Q psy3917 36 ENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVIH 115 (295)
Q Consensus 36 ~~~~~m~~~vVvG~QwGDEGKGKivD~La~~~dvVvRfnGG~NAGHTVv~~g~k~~l~llPSGil~~~~~~~IG~GvVvd 115 (295)
..+..+++++|||+|||||||||||||||+++|+|||||||+||||||+++|+||+|||||||+++|++.|+||||||||
T Consensus 26 ~~~~~~~v~vVvG~QWGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~g~k~~lhliPSGil~~~~~~vIGnGvVvd 105 (459)
T 2v40_A 26 ARPGGNRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGVVIH 105 (459)
T ss_dssp ---CCCCEEEEEESSSSCSSHHHHHHHHHTTCSEEEECSBCSCCCEEEEETTEEEEESSSCGGGGSTTCEEEECTTBEEE
T ss_pred cCCCCeeEEEEEecCcCCCCCceEEEEeccCCCEEeecCccCCCCcEEEECCEEEEEEccCccccCCCceEEECCcEEEc
Confidence 45566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh--CCCCCCCCCEEEeCCceecchhhhhhhchhhhhhCCCC---cCCCCCCccccccccccccCceee
Q psy3917 116 LPGLFDELQKNEN--KGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKKS---LGTTKKGIGPAYSSKATRNGIRIA 190 (295)
Q Consensus 116 p~~l~~Ei~~L~~--~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~g~~~---IGTTg~GIGpay~dK~~R~giRv~ 190 (295)
|++|++||+.|++ +|+..+.+||+||+|||||+|||+++|+++|..+|..+ ||||||||||||+||++|+|||++
T Consensus 106 p~~L~~Ei~~L~~~~~Gv~~~~~rL~IS~rahli~p~H~~lD~~~E~~~g~~~~~~IGTTgrGIGPaY~DK~~R~giRv~ 185 (459)
T 2v40_A 106 LPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMC 185 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGTTGGGSEEEETTCEEECHHHHHHHHHHHHC------------CCCHHHHHHHHHHTCCCBHH
T ss_pred HHHHHHHHHHHHhhhcCCCCCCCCEEEeCCccCCCccHHHhhHHHHHhcCCCCCCCcCCCCCCcHHHHHhhhhccccEee
Confidence 9999999999999 89754458999999999999999999999999998777 999999999999999999999999
Q ss_pred eccCChhhhh----------------------------------------------------c-----------------
Q psy3917 191 DLLGDFNVFT----------------------------------------------------E----------------- 201 (295)
Q Consensus 191 DL~~~~~~~~----------------------------------------------------~----------------- 201 (295)
||+.|++.|+ +
T Consensus 186 DL~~d~~~~~~kl~~~~~~~n~~l~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~~gk~VLfEGAQG~lLDiD 265 (459)
T 2v40_A 186 DLVSDFDGFSERFKVLANQYKSIYPTLEIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDID 265 (459)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHSSCCCEEEECCSCGGGCTT
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhCCCEEEEEechhhhhhcc
Confidence 9974433211 0
Q ss_pred --------------------------------------------------ccchHhHHHhhcCCccccccCCccccccch
Q psy3917 202 --------------------------------------------------KDSEIGDKLQRIGNEVGVTTKRKRRCGWLD 231 (295)
Q Consensus 202 --------------------------------------------------l~~e~g~~lr~~G~E~Gt~TgRpRR~GwlD 231 (295)
+++|+|+.||++|+||||||||||||||||
T Consensus 266 ~GTYPyVTSSnttagga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~L~~~G~E~GttTGR~RRcGWfD 345 (459)
T 2v40_A 266 FGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLD 345 (459)
T ss_dssp TSSTTSSCSSCCSTHHHHHHHTCCGGGEEEEEEEEESSEEESSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEE
T ss_pred cCcCcCCCCCcchHhhhhhccCCCcccCCeEEEEEeeccceecCCCCCcccChhHHHHhhhcCCcccCCCCCCcccccch
Confidence 667889999999999999999999999999
Q ss_pred HHHHHHhhHhcCcceEEeecccccCCCCceeEEEEEeeCCEEeecCCCCccccCCcEEEEE
Q psy3917 232 IPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKRHGKTLHYFPSNSSELAKVEYYVL 292 (295)
Q Consensus 232 ~~~lrya~~ing~~~lalTklDvL~~~~~ikic~~Y~~~G~~~~~~P~~~~~l~~~epvy~ 292 (295)
++++|||+++||+|+||||||||||+|++||||++|+++|+++++||++++.|++|||+|.
T Consensus 346 ~v~lrya~~inG~t~lalTKLDvLd~l~~ikvcvaY~~~G~~~~~~P~~~~~l~~~~PvYe 406 (459)
T 2v40_A 346 LVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYKLDGEIIPHIPANQEVLNKVEVQYK 406 (459)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGGGGCSEEEEEEEEEETTEEESSCCSSHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEECcCcCCCCCeeeEEEEEeeCCEEeeeCCCChHHhhcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 5
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10
Probab=100.00 E-value=1.4e-101 Score=755.09 Aligned_cols=250 Identities=45% Similarity=0.827 Sum_probs=236.0
Q ss_pred CCCceEEEEEcCCcccCCchhhHHhhccCCcEEEecCCCCCCccEEEECCEEEEEeeccceeecCCceeEEcCCeEechH
Q psy3917 38 PKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVIHLP 117 (295)
Q Consensus 38 ~~~m~~~vVvG~QwGDEGKGKivD~La~~~dvVvRfnGG~NAGHTVv~~g~k~~l~llPSGil~~~~~~~IG~GvVvdp~ 117 (295)
-.+|+.++|||+|||||||||||||||+++|+|||||||+||||||+++|++|+|||||||+++|++.|+||||||+||+
T Consensus 11 ~~~~~~vvVvG~QWGDEGKGKivD~La~~~d~VvR~qGG~NAGHTVv~~g~k~~lhliPSGil~~~~~~vIGnGvVvdp~ 90 (442)
T 1p9b_A 11 VDKGNVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLYDNNISVLGNGMVIHVK 90 (442)
T ss_dssp ---CCEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEEETTEEEEESSSCTTTTSTTCEEEECTTCEECHH
T ss_pred ccccCceEEEcCCcCCCCCceEEeeecccCCEEEEcCccCCCCcEEEECCEEEEEEecCccccCCCceEEECCcEEEcHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCceecchhhhhhhchhhhhh--CCCCcCCCCCCccccccccccccCceeeeccCC
Q psy3917 118 GLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEK--GKKSLGTTKKGIGPAYSSKATRNGIRIADLLGD 195 (295)
Q Consensus 118 ~l~~Ei~~L~~~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~--g~~~IGTTg~GIGpay~dK~~R~giRv~DL~~~ 195 (295)
+|++||+.|+++ + .+||+||+|||||+|||+++|+++|..+ |.++||||||||||||+||++|+|||++||+ |
T Consensus 91 ~L~~Ei~~L~~~-v---~~rL~IS~rahli~p~H~~lD~~~E~~~~~g~~~IGTTgrGIGPaY~dK~~R~giRv~DL~-d 165 (442)
T 1p9b_A 91 SLMEEIESVGGK-L---LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLK-N 165 (442)
T ss_dssp HHHHHHHHHCTT-G---GGGEEEETTSEECCHHHHHHHHHHHHHHHHTTCCCCCCSSSHHHHHHHHHTTCCCBGGGGG-S
T ss_pred HHHHHHHHHHhh-c---cCCEEECCCccCCChhHHHHHHHhHHhhhcCCCCCCCCCCCcHHHHHHHHhccccEehHhc-C
Confidence 999999999876 4 3799999999999999999999999999 8889999999999999999999999999998 5
Q ss_pred hhhhhc--------------------------------------------------------------------------
Q psy3917 196 FNVFTE-------------------------------------------------------------------------- 201 (295)
Q Consensus 196 ~~~~~~-------------------------------------------------------------------------- 201 (295)
++.|++
T Consensus 166 ~~~~~~kl~~~~~~~~~~y~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~vLfEGAQG~lLDiD~GtYPy 245 (442)
T 1p9b_A 166 FENFKNMYSKLIDHLMDLYNITEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPY 245 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTS
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCeEEEEeccHhhhhhcCCcCcC
Confidence 433211
Q ss_pred --------------------------------------------ccchHhHHHhhcCCccccccCCccccccchHHHHHH
Q psy3917 202 --------------------------------------------KDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKY 237 (295)
Q Consensus 202 --------------------------------------------l~~e~g~~lr~~G~E~Gt~TgRpRR~GwlD~~~lry 237 (295)
+++|+|++||++|+||||||||||||||||++++||
T Consensus 246 VTSSnttagga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~GttTGR~RRcGWfD~v~lry 325 (442)
T 1p9b_A 246 VTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLY 325 (442)
T ss_dssp SCSSCCSHHHHHHTTTCCGGGCCEEEEEEESSEEECSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHHHH
T ss_pred ccCccchHhHHHhccCCCcccCCeEEEEEeeccceecCCCCCcccchHHHHHHHhcCCeeCCcCCCCccCCcchHHHHHH
Confidence 667889999999999999999999999999999999
Q ss_pred hhHhcCcceEEeecccccCCCCceeEEEEEe--eCCEEee--cCCCCccccCCcEEEEE
Q psy3917 238 TSMVNGYTKLCITKLDILDTFEEIKIGVAYK--RHGKTLH--YFPSNSSELAKVEYYVL 292 (295)
Q Consensus 238 a~~ing~~~lalTklDvL~~~~~ikic~~Y~--~~G~~~~--~~P~~~~~l~~~epvy~ 292 (295)
|+++||+|+||||||||||+|++||||++|+ +||++++ +||++++.|++|||+|.
T Consensus 326 a~~inG~t~lalTkLDvLdgl~~ikicv~Y~~~~~G~~~~~~~~P~~~~~l~~~~PvYe 384 (442)
T 1p9b_A 326 VKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYEPVYE 384 (442)
T ss_dssp HHHHHCCSEEEEECGGGGTTCSEEEEEEEEEETTTCCBCCTTCCCCSHHHHTTEEEEEE
T ss_pred HHHHcCCCeEeeecccccCCCCceeEEEEEeeccCCEEeecCcCCCChHHhccceEEEE
Confidence 9999999999999999999999999999999 9999999 99999999999999995
No 6
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter jejuni} SCOP: c.37.1.0
Probab=100.00 E-value=5.9e-101 Score=747.67 Aligned_cols=244 Identities=47% Similarity=0.826 Sum_probs=224.1
Q ss_pred Cce-EEEEEcCCcccCCchhhHHhhccCCcEEEecCCCCCCccEEEECCEEEEEeeccceeecCCceeEEcCCeEechHH
Q psy3917 40 LHK-VTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVIHLPG 118 (295)
Q Consensus 40 ~m~-~~vVvG~QwGDEGKGKivD~La~~~dvVvRfnGG~NAGHTVv~~g~k~~l~llPSGil~~~~~~~IG~GvVvdp~~ 118 (295)
+|+ .++|||+|||||||||||||||+++|+|||||||+||||||+++|++|+|||||||+++|++.|+||||||+||++
T Consensus 3 ~M~~~~vVvG~QwGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~g~k~~lhliPSGil~~~~~~vIGnGvVvdp~~ 82 (419)
T 3r7t_A 3 AMSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTIWVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEV 82 (419)
T ss_dssp -CCCEEEEEECSSSCSCHHHHHHHHHTTCSEEEECSBCTTSSEEEEETTEEEEESSSCGGGGSTTCEEEECTTBEECHHH
T ss_pred CCcceeEEEeCCcccCCCceeeeeecccCCEEEEcCCcCCCCcEEEECCEEEEEEecCceEcCCCCeEEECCCEEEcHHH
Confidence 366 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEeCCceecchhhhhhhchhhhhhCCCCcCCCCCCccccccccccccCceeeeccCChhh
Q psy3917 119 LFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNV 198 (295)
Q Consensus 119 l~~Ei~~L~~~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~g~~~IGTTg~GIGpay~dK~~R~giRv~DL~~~~~~ 198 (295)
|++||+.|++ ++ +||+||+|||||+|||+++|+++|..+|.++||||||||||||+||++|+|||++||+ |++.
T Consensus 83 l~~Ei~~L~~--v~---~rL~Is~rahli~p~H~~~D~~~E~~~g~~~iGTTgrGIGPaY~dK~~R~giRv~DL~-~~~~ 156 (419)
T 3r7t_A 83 LIAEMAQFEN--LK---GRLYISDRAHLNLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELL-EPQR 156 (419)
T ss_dssp HHHHHTTSSC--CT---TTEEEETTSEECCHHHHHHHHHHHHHCCT--------THHHHHHHHHTTCCCBGGGGG-SHHH
T ss_pred HHHHHHHHhc--cC---CCEEECCCCCCCChHHHHhhhhhhhhcCCCCcCCCCCChHHhhhhhccccCceeehhc-CHHH
Confidence 9999999976 42 8999999999999999999999999999999999999999999999999999999998 5444
Q ss_pred hhc-----------------------------------------------------------------------------
Q psy3917 199 FTE----------------------------------------------------------------------------- 201 (295)
Q Consensus 199 ~~~----------------------------------------------------------------------------- 201 (295)
|++
T Consensus 157 ~~~kl~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~iLfEGAQG~lLDid~GtYP~ 236 (419)
T 3r7t_A 157 LCEALIKDFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEGAQGSMLDIDHGTYPY 236 (419)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCcEEEEecchhhhccccCcCCC
Confidence 321
Q ss_pred --------------------------------------------ccchHhHHHhhcCCccccccCCccccccchHHHHHH
Q psy3917 202 --------------------------------------------KDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKY 237 (295)
Q Consensus 202 --------------------------------------------l~~e~g~~lr~~G~E~Gt~TgRpRR~GwlD~~~lry 237 (295)
+++|+|+.||++|+|||+||||||||||||++++||
T Consensus 237 VTSSnt~a~ga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~GttTGR~RRcGw~D~v~lry 316 (419)
T 3r7t_A 237 VTSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPTEDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRY 316 (419)
T ss_dssp SCSSCCSHHHHHHHHTCCGGGEEEEEEEEESSEEESSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHHHH
T ss_pred cCCCCcchhhHhhccCCCchhcceEEEEEEeccccccCCCCCCcCCchhHHHHHhcCCCcCCcCCCCccccccHHHHHHH
Confidence 667889999999999999999999999999999999
Q ss_pred hhHhcCcceEEeecccccCCCCceeEEEEEeeCCEEeecCCCCccccCCcEEEEE
Q psy3917 238 TSMVNGYTKLCITKLDILDTFEEIKIGVAYKRHGKTLHYFPSNSSELAKVEYYVL 292 (295)
Q Consensus 238 a~~ing~~~lalTklDvL~~~~~ikic~~Y~~~G~~~~~~P~~~~~l~~~epvy~ 292 (295)
|+++||+|+||||||||||+|++||||++|+++|+++++||+++ ++|||+|.
T Consensus 317 a~~ing~t~lalTkLDvL~~~~~ikvcv~Y~~~G~~~~~~P~~~---~~~~pvYe 368 (419)
T 3r7t_A 317 TARLNGLDALSLMKLDVLDGFEKIKICRAYEYKGMEIDYIPSDL---ENVQPIYE 368 (419)
T ss_dssp HHHHHTCSEEEEECGGGGTTCSEEEEEEEEEETTEEESSCCSCG---GGEEEEEE
T ss_pred HHHhcCCCeEEEecchhhcCCCceeEEEEEeeCCEEEeeCCCCc---cccEEEEE
Confidence 99999999999999999999999999999999999999999986 89999996
No 7
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.3e-87 Score=634.45 Aligned_cols=216 Identities=33% Similarity=0.605 Sum_probs=182.3
Q ss_pred ceEEEEEcCCcccCCchhhHHhhccC--CcEEEecCCCCCCccEEEECCEEEEEeeccceeecCCceeEEcCCeEechHH
Q psy3917 41 HKVTVVLGAQWGDEGKGKVVDMLAVD--ADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVIHLPG 118 (295)
Q Consensus 41 m~~~vVvG~QwGDEGKGKivD~La~~--~dvVvRfnGG~NAGHTVv~~g~k~~l~llPSGil~~~~~~~IG~GvVvdp~~ 118 (295)
|+.++|||+|||||||||||||||++ +|+|||||||+||||||+++|++|+|||||||+++|++.|+||||||+||++
T Consensus 1 M~~vvVvG~qwGDEGKGKivD~La~~~~~d~VvR~qGG~NAGHTVv~~g~~~~lhllPSGi~~~~~~~vIGnGvVvdp~~ 80 (339)
T 2d7u_A 1 MPSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEV 80 (339)
T ss_dssp CCCEEEEESSSSCSSHHHHHHHHHHHTCCSEEEECSSSSSCCEEEEETTEEEEESSSCTTTTCSSSBEEECTTSCBCHHH
T ss_pred CceEEEEcCCcCCCCCceeEeeeccCCCCCEEEEcCccCCCCcEEEECCEEEEEEcCCccccCCCceEEECCcEEEcHHH
Confidence 67789999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEeCCceecchhhhhhhchhhhhhCCCCcCCCCCCccccccccccccCceeeeccCChhh
Q psy3917 119 LFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNV 198 (295)
Q Consensus 119 l~~Ei~~L~~~G~~~~~~rL~Is~rAhli~p~H~~lD~~~E~~~g~~~IGTTg~GIGpay~dK~~R~giRv~DL~~~~~~ 198 (295)
|++||+.|+++|+. +||+||+|||||+|||+++|+++|..+ ++||||||||||||+||++|+|||++||- ....
T Consensus 81 l~~Ei~~L~~~Gv~---~rL~Is~ra~li~p~H~~~D~~~E~~~--~~iGTTgrGIGPay~dK~~R~giRv~Dl~-~l~p 154 (339)
T 2d7u_A 81 FFHELEQLKDFNVK---DRVGIDYRCAIIEEKHKQLDRTNGYLH--GKIGTTGSGCGPANADRVMRKAKQAKDVK-ELEP 154 (339)
T ss_dssp HHHHHHHTGGGTGG---GTEEEETTCBBCCHHHHC------------------CCHHHHHHHHTTTCSCBGGGCS-SSST
T ss_pred HHHHHHHHHHCCCC---CCEEECCCccCCChhHHHHhHHhHHhh--ccCCCCCCCchHHHHHHHhccCccHHHHH-HHhc
Confidence 99999999999974 799999999999999999999999987 68999999999999999999999999972 1111
Q ss_pred --------hh----c-----------------------------------------------------------------
Q psy3917 199 --------FT----E----------------------------------------------------------------- 201 (295)
Q Consensus 199 --------~~----~----------------------------------------------------------------- 201 (295)
+. +
T Consensus 155 ~v~D~~~~l~~a~~~gk~vLfEGaQG~lLDid~GtYP~VTSSnt~a~g~~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFP 234 (339)
T 2d7u_A 155 YLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYPYVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFP 234 (339)
T ss_dssp TEECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTTSSCSSCCSHHHHHHHHTCCGGGCCEEEEEEESSCEECSSSCCT
T ss_pred cccCHHHHHHHHHHcCCeEEEEechHhhhhccCCcCCCccCCCchhhhhhhccCCCccccCeEEEEEeeccceecCCCCC
Confidence 11 0
Q ss_pred --ccchHhHHHhhcC-CccccccCCccccccchHHHHHHhhHhcCcceEEeecccccCCCCceeEEEEE
Q psy3917 202 --KDSEIGDKLQRIG-NEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAY 267 (295)
Q Consensus 202 --l~~e~g~~lr~~G-~E~Gt~TgRpRR~GwlD~~~lrya~~ing~~~lalTklDvL~~~~~ikic~~Y 267 (295)
+++|++++ +| +|||+||||||||||||++++|||+++||+|+|||||||+|++ .+.-|..|
T Consensus 235 TEl~~e~g~~---~G~~E~GttTGR~RRcGw~D~v~~rya~~ing~t~lalTkLDvLd~--~~~~~~~~ 298 (339)
T 2d7u_A 235 TEMPMEEADR---LGLVEYGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLDKYDK--EAFGVTDY 298 (339)
T ss_dssp TBCCHHHHHH---TTCCCBCTTTCCBCEEBCCCHHHHHHHHHHTTCSEEEEECGGGTCG--GGTTCCSG
T ss_pred chhhhhhhhh---cCCCcccCcCCCCcccCcchHHHHHHHHHhcCCCeEEEEcccccCC--ccccceeh
Confidence 44556666 89 9999999999999999999999999999999999999999996 55555555
No 8
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=30.15 E-value=13 Score=27.94 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=24.0
Q ss_pred cccCCchhhHHhhccCCcEEEecCCCCCCccE
Q psy3917 51 WGDEGKGKVVDMLAVDADLVCRCQGGNNAGHT 82 (295)
Q Consensus 51 wGDEGKGKivD~La~~~dvVvRfnGG~NAGHT 82 (295)
|+++|+---+|-=...|.++|||.+++=+|++
T Consensus 18 y~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~ 49 (70)
T 1qp2_A 18 FQDVGTVASVDQSGIKYPVIVRFEKVNYSGIN 49 (70)
T ss_dssp TTCEEEEEEECCSSCSCSEEEECSSCCSSCCS
T ss_pred ecceeEEEEEeCCCcEeeEEEEeccccccccc
Confidence 56777766666544478999999998878874
No 9
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=27.73 E-value=75 Score=23.74 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=27.6
Q ss_pred CcEEEecCCCCCCccEEEECCEEEEEeeccc
Q psy3917 67 ADLVCRCQGGNNAGHTVVVDSTEYDFHLVPS 97 (295)
Q Consensus 67 ~dvVvRfnGG~NAGHTVv~~g~k~~l~llPS 97 (295)
+.+.+||.-+-+++|-|.++|+.|...-+|.
T Consensus 58 ~~~~iR~~~~i~~~~ri~~~g~~y~I~~v~~ 88 (109)
T 2kca_A 58 YNIYTPYDDRIDKKMRVIYRGKIVTFIGDPV 88 (109)
T ss_dssp EEEEEESCCCSSSSEEEEETTEEEEEEEEEE
T ss_pred EEEEEEcCCCCCCccEEEECCEEEEEEEecc
Confidence 4679999999999999999999999988753
No 10
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=20.15 E-value=22 Score=21.84 Aligned_cols=16 Identities=38% Similarity=0.626 Sum_probs=12.9
Q ss_pred HhHHHhhcCCcccccc
Q psy3917 206 IGDKLQRIGNEVGVTT 221 (295)
Q Consensus 206 ~g~~lr~~G~E~Gt~T 221 (295)
++++||..|.||-...
T Consensus 8 iAqELRRIGDeFN~~y 23 (26)
T 2wh6_B 8 IAQELRRIGDEFNAYY 23 (26)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhHHHhhhc
Confidence 5789999999998754
Done!