RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3917
(295 letters)
>gnl|CDD|239382 cd03108, AdSS, Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the r-phosphate
group of GTP is transferred to the 6-oxygen atom of IMP.
An aspartate then displaces this 6-phosphate group to
form the product adenylosuccinate. Because of its
critical role in purine biosynthesis, AdSS is a target
of antibiotics, herbicides and antitumor drugs.
Length = 363
Score = 276 bits (709), Expect = 6e-92
Identities = 94/150 (62%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
Query: 43 VTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINP 102
VTVV+GAQWGDEGKGK+VD+LA AD+V R QGGNNAGHTVVV+ ++ HL+PSGI+NP
Sbjct: 1 VTVVVGAQWGDEGKGKIVDLLAERADIVVRFQGGNNAGHTVVVNGKKFKLHLLPSGILNP 60
Query: 103 KAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEK 162
+IGNGVVI P LF+E+ + E KG RL ISDRAHLVF +H +DGL+E +
Sbjct: 61 GVTCVIGNGVVIDPPALFEEIDELEKKGG-DVTGRLFISDRAHLVFPYHILLDGLREEAR 119
Query: 163 GKKSLGTTKKGIGPAYSSKATRNGIRIADL 192
GKK +GTTK+GIGPAY KA R GIR+ DL
Sbjct: 120 GKKKIGTTKRGIGPAYEDKAARRGIRVGDL 149
Score = 149 bits (378), Expect = 2e-42
Identities = 56/116 (48%), Positives = 72/116 (62%), Gaps = 11/116 (9%)
Query: 173 GIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDI 232
G+ AY+ TR G G F TE E GDKL+ G+E G TT R RRCGWLD+
Sbjct: 211 GVVKAYT---TRVGS------GPF--PTELFDETGDKLREAGHEFGTTTGRPRRCGWLDL 259
Query: 233 PLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
LKY +NG T+L +TKLD+LD +EIK+ VAY+ GK + YFP++ +L KVE
Sbjct: 260 VALKYAVRINGVTELALTKLDVLDGLDEIKVCVAYELDGKEIDYFPADLEDLEKVE 315
>gnl|CDD|216073 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 262 bits (671), Expect = 2e-85
Identities = 93/160 (58%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
Query: 43 VTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINP 102
V VV+GAQWGDEGKGK+VD+LA DAD+V R QGGNNAGHTVVVD +Y HL+PSGI+NP
Sbjct: 1 VIVVVGAQWGDEGKGKIVDLLAEDADVVVRFQGGNNAGHTVVVDGKKYKLHLLPSGILNP 60
Query: 103 KAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEK 162
++IGNGVV+ L +E+++ E KG+ DRL ISDRAHL+ +H+ +D L+E +
Sbjct: 61 GVINVIGNGVVVDPEALLEEIEELEKKGVDVL-DRLFISDRAHLILPYHRALDRLREEAR 119
Query: 163 GKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
GK +GTT +GIGPAY+ K R GIR+ DLL D V EK
Sbjct: 120 GKGKIGTTGRGIGPAYADKVARRGIRVGDLL-DEEVLREK 158
Score = 148 bits (376), Expect = 9e-42
Identities = 46/89 (51%), Positives = 63/89 (70%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E+G+KL+ G+E G TT R RRCGWLD+ L+Y + +NG T L +TKLD+LD +
Sbjct: 278 TELFDELGEKLREKGHEFGTTTGRPRRCGWLDLVALRYAARINGVTSLALTKLDVLDGLD 337
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIK+ VAY+ GK + YFP++ +L KVE
Sbjct: 338 EIKVCVAYRYDGKEIDYFPASLEDLEKVE 366
>gnl|CDD|197875 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
Adenylosuccinate synthetase plays an important role in
purine biosynthesis, by catalyzing the GTP-dependent
conversion of IMP and aspartic acid to AMP.
Adenylosuccinate synthetase has been characterized from
various sources ranging from Escherichia coli (gene
purA) to vertebrate tissues. In vertebrates, two
isozymes are present - one involved in purine
biosynthesis and the other in the purine nucleotide
cycle. The crystal structure of adenylosuccinate
synthetase from E. coli reveals that the dominant
structural element of each monomer of the homodimer is a
central beta-sheet of 10 strands. The first nine strands
of the sheet are mutually parallel with right-handed
crossover connections between the strands. The 10th
strand is antiparallel with respect to the first nine
strands. In addition, the enzyme has two antiparallel
beta-sheets, comprised of two strands and three strands
each, 11 alpha-helices and two short 3/10-helices.
Further, it has been suggested that the similarities in
the GTP-binding domains of the synthetase and the p21ras
protein are an example of convergent evolution of two
distinct families of GTP-binding proteins. Structures of
adenylosuccinate synthetase from Triticum aestivum and
Arabidopsis thaliana when compared with the known
structures from E. coli reveals that the overall fold is
very similar to that of the E. coli protein.
Length = 417
Score = 257 bits (659), Expect = 1e-83
Identities = 92/160 (57%), Positives = 112/160 (70%), Gaps = 6/160 (3%)
Query: 43 VTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINP 102
V VV+GAQWGDEGKGK+VD LA AD+V R QGGNNAGHTVVV+ +Y HL+PSGI+NP
Sbjct: 1 VVVVVGAQWGDEGKGKIVDYLAEKADVVVRFQGGNNAGHTVVVNGKKYKLHLLPSGILNP 60
Query: 103 KAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEK 162
K++IGNGVVI LF E+++ E KG+ KDRL ISDRAHL+ +H +D +E
Sbjct: 61 NKKNVIGNGVVIDPEALFKEIEELEAKGV-DVKDRLFISDRAHLILPYHIALDKARE--- 116
Query: 163 GKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
K +GTT +GIGPAY K R GIR+ DL D V EK
Sbjct: 117 -KARIGTTGRGIGPAYEDKVARRGIRVGDLF-DEEVLREK 154
Score = 148 bits (376), Expect = 9e-42
Identities = 56/124 (45%), Positives = 70/124 (56%), Gaps = 16/124 (12%)
Query: 173 GIGPAYSS------KA--TRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRK 224
GIGP KA TR G G F TE E G+KL+ G+E G TT R
Sbjct: 247 GIGPTRIDRVIGVVKAYTTRVGE------GPF--PTELFDETGEKLRERGHEFGTTTGRP 298
Query: 225 RRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKRHGKTLHYFPSNSSEL 284
RRCGW D LL+Y +NG T L +TKLD+LD +EIK+ VAYK GK + YFP++ +L
Sbjct: 299 RRCGWFDAVLLRYAVRINGITGLALTKLDVLDGLDEIKVCVAYKLDGKIIDYFPADLEDL 358
Query: 285 AKVE 288
+ E
Sbjct: 359 ERCE 362
>gnl|CDD|240376 PTZ00350, PTZ00350, adenylosuccinate synthetase; Provisional.
Length = 436
Score = 246 bits (631), Expect = 2e-79
Identities = 99/176 (56%), Positives = 130/176 (73%), Gaps = 4/176 (2%)
Query: 42 KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
KV V+LGAQWGDEGKGK+VD+L+ AD+V R GG NAGHT+VVD +Y HL+P GI+
Sbjct: 13 KVVVILGAQWGDEGKGKLVDILSEKADIVARFNGGANAGHTIVVDGKKYALHLLPCGILY 72
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
P +++GNGVVIHLP L +E+++ KG+ RL ISDRAHLVFD HQ +DG+QE+E
Sbjct: 73 PNCINVLGNGVVIHLPSLLEEIEQLTKKGIN-LLGRLYISDRAHLVFDLHQAIDGIQESE 131
Query: 162 KGK--KSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGN 215
KGK +GTTK+GIGP YS+KA+R G+R+ DLL +F F +K ++ +KLQ N
Sbjct: 132 KGKGGTQIGTTKRGIGPCYSTKASRTGLRVGDLL-NFETFEKKYRKLVEKLQEQYN 186
Score = 125 bits (315), Expect = 5e-33
Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E GD L++ G+E G TT R RRCGWLDIP L+Y M+NG+ + +TKLD+L +
Sbjct: 289 TELFDENGDYLRKKGHEYGTTTGRPRRCGWLDIPALRYVQMINGFDSINLTKLDVLSGLK 348
Query: 260 EIKIGVAYKRHGKTL--HYFPSNSSELAKVE 288
EIKI V YK G L +PS+ EL + E
Sbjct: 349 EIKICVNYKNKGTGLEIGRYPSSIEELEEYE 379
>gnl|CDD|178129 PLN02513, PLN02513, adenylosuccinate synthase.
Length = 427
Score = 245 bits (628), Expect = 4e-79
Identities = 99/164 (60%), Positives = 126/164 (76%), Gaps = 3/164 (1%)
Query: 40 LHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVV-VDSTEYDFHLVPSG 98
L +V+ VLG QWGDEGKGK+VD+LA D+V RCQGG NAGHT+ + ++ HLVPSG
Sbjct: 1 LSQVSAVLGTQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNDEGKKFALHLVPSG 60
Query: 99 IINPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQ 158
I+N K +IGNGVV+HLPGLF+E+ E+ G++ + RLL+SDRAHL+FDFHQ+VDGL+
Sbjct: 61 ILNEKTTCVIGNGVVVHLPGLFEEIDGLESNGVS-CEGRLLVSDRAHLLFDFHQEVDGLR 119
Query: 159 EAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
EAE +GTTK+GIGPAYSSKATRNG+R+ DL + F EK
Sbjct: 120 EAELAGSKIGTTKRGIGPAYSSKATRNGLRVGDLR-HMDTFAEK 162
Score = 117 bits (295), Expect = 3e-30
Identities = 50/96 (52%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E+GD L+ G E G TT R RRCGWLDI LKY+ +NG+T L +TKLD+L
Sbjct: 281 TELFGELGDLLREAGQEFGTTTGRPRRCGWLDIVALKYSCQINGFTSLNLTKLDVLSGLP 340
Query: 260 EIKIGVAYKRH-GKTLHYFPSNSSELA--KVEYYVL 292
EIKIGVAYK GK + FP++ L +V Y VL
Sbjct: 341 EIKIGVAYKTPDGKVVKSFPADLDTLEQVEVVYEVL 376
>gnl|CDD|234904 PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.
Length = 430
Score = 234 bits (601), Expect = 7e-75
Identities = 83/161 (51%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 42 KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
K VV+G QWGDEGKGK+VD+L+ AD+V R QGG+NAGHT+V+D +Y HL+PSGI+
Sbjct: 2 KNVVVVGTQWGDEGKGKIVDLLSERADVVVRFQGGHNAGHTLVIDGKKYKLHLIPSGILR 61
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
P +IGNGVV+ L E+ + E +G+ ++RL IS+RAHL+ +H+ +D +E
Sbjct: 62 PGKTCVIGNGVVLDPEALLKEIDELEARGVDV-RERLRISERAHLILPYHRALDKAREKA 120
Query: 162 KGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
+GKK +GTT +GIGPAY K R GIR+ DLL D F EK
Sbjct: 121 RGKKKIGTTGRGIGPAYEDKVARRGIRVGDLL-DPETFAEK 160
Score = 145 bits (369), Expect = 1e-40
Identities = 46/89 (51%), Positives = 59/89 (66%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E+G+ L+ G+E G TT R RRCGW D L+Y VNG T L +TKLD+LD E
Sbjct: 280 TELFDEVGEHLRERGHEFGTTTGRPRRCGWFDAVALRYAVRVNGLTGLALTKLDVLDGLE 339
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIKI VAY+ GK + YFP++ +LA+ E
Sbjct: 340 EIKICVAYELDGKRIDYFPASLEDLARCE 368
>gnl|CDD|223182 COG0104, PurA, Adenylosuccinate synthase [Nucleotide transport and
metabolism].
Length = 430
Score = 230 bits (590), Expect = 3e-73
Identities = 87/161 (54%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 42 KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
VV+GAQWGDEGKGK+VD LA AD+V R QGG+NAGHTVVV+ +Y HL+PSGI+
Sbjct: 2 MNVVVVGAQWGDEGKGKIVDYLADRADVVVRYQGGHNAGHTVVVNGEKYKLHLIPSGILR 61
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
P A +IGNGVV+ L E+++ E +G+ +DRL ISDRAHL+ +H ++D +E
Sbjct: 62 PGATLVIGNGVVVDPEVLLKEIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREKA 121
Query: 162 KGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
GKK +GTT +GIGPAY K R GIR+ DLL D EK
Sbjct: 122 LGKKKIGTTGRGIGPAYEDKVARRGIRVGDLL-DPETLREK 161
Score = 133 bits (338), Expect = 3e-36
Identities = 47/89 (52%), Positives = 62/89 (69%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E+G+KL+ +G+E G TT R RRCGW D LL+Y +NG T L ITKLD+LD +
Sbjct: 281 TELFDEVGEKLREVGHEYGTTTGRPRRCGWFDAVLLRYAVRINGITGLAITKLDVLDGLD 340
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIKI VAY+ GK + YFP++ +LA+ E
Sbjct: 341 EIKICVAYEIDGKRIDYFPADLDDLARCE 369
>gnl|CDD|232863 TIGR00184, purA, adenylosuccinate synthase. Alternate name
IMP--aspartate ligase [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 425
Score = 198 bits (505), Expect = 8e-61
Identities = 83/168 (49%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 45 VVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
VV+G QWGDEGKGK+VD+LA D+V R QGG+NAGHT+V+D +Y HL+PSG + P A
Sbjct: 1 VVVGGQWGDEGKGKIVDLLADKPDIVARYQGGHNAGHTIVIDGVKYGLHLIPSGFLYPDA 60
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGK 164
K +IGNGVV+ L E++ E +G++ +DRL +S R HL+ +H+++D +E K
Sbjct: 61 KLLIGNGVVVDPEVLLKEMEYLEKRGISV-RDRLFVSYRCHLILPYHKKLDKAREKSKLA 119
Query: 165 KSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQR 212
K +GTT KGIGPAY K R+G+R+ DLL D F EK I + L
Sbjct: 120 KKIGTTGKGIGPAYEDKVARSGLRVGDLLDD-EAFAEKAKNILEYLNE 166
Score = 115 bits (290), Expect = 2e-29
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+KL G E G TT R+RRCGW D+ +Y +NG T+L +TKLD+LD +
Sbjct: 276 TELSDEEGEKLGTKGAEFGTTTGRRRRCGWFDLVAARYACRLNGATQLALTKLDVLDGID 335
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIK+ VAY+ G+ L FP + +L VE
Sbjct: 336 EIKVCVAYRMKGEILELFPLDLKDLKGVE 364
>gnl|CDD|184326 PRK13788, PRK13788, adenylosuccinate synthetase; Provisional.
Length = 404
Score = 162 bits (411), Expect = 5e-47
Identities = 76/150 (50%), Positives = 98/150 (65%), Gaps = 9/150 (6%)
Query: 46 VLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAK 105
++GAQWGDEGKGKVVD LA +AD V R QGG NAGHTVV + +L+PSG+++P A
Sbjct: 6 IIGAQWGDEGKGKVVDALAPEADFVVRYQGGANAGHTVVAKGKTFKLNLLPSGVLHPHAT 65
Query: 106 SIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGKK 165
S++G+G+VI +E + GL +LLIS+RAHLV H+ VDG K
Sbjct: 66 SVLGDGMVIDPFRFAEERENLRAGGLNP---KLLISERAHLVLPHHKYVDG------RKN 116
Query: 166 SLGTTKKGIGPAYSSKATRNGIRIADLLGD 195
+GTT +GIGPAYS +A R GIR DLL +
Sbjct: 117 FVGTTGRGIGPAYSDRARRVGIRFGDLLDE 146
Score = 74.1 bits (182), Expect = 6e-15
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 200 TEKDSEIGDKLQRIG----NEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDIL 255
TE E+ +L+ G +E G TT R RR GWLD+ LLKY VNG+ L +TKLD+L
Sbjct: 269 TEVFGEMAIRLRGKGGNPWDEFGTTTGRARRVGWLDLVLLKYACEVNGFDGLVLTKLDVL 328
Query: 256 DTFEEIKIGVAYKRHGK 272
E++K+ V Y G+
Sbjct: 329 SGLEKVKVCVEYDDDGQ 345
>gnl|CDD|237506 PRK13785, PRK13785, adenylosuccinate synthetase; Provisional.
Length = 454
Score = 155 bits (394), Expect = 3e-44
Identities = 71/153 (46%), Positives = 97/153 (63%), Gaps = 7/153 (4%)
Query: 43 VTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINP 102
VT+V G+Q GDEGKG VVD+ AD+V R QGG+NAGHTVV EY LVPSG +
Sbjct: 3 VTIV-GSQLGDEGKGGVVDLYGDAADVVVRYQGGDNAGHTVVHGGEEYKLSLVPSGAVRG 61
Query: 103 KAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEK 162
K ++GNG V++ LFDE+ +GL + +++RAH++ +H+ +DG++E K
Sbjct: 62 KI-GVLGNGCVVNPETLFDEIDALRERGLD---PDVRVAERAHVILPYHRVLDGIEEEAK 117
Query: 163 GKKSL--GTTKKGIGPAYSSKATRNGIRIADLL 193
L GTT +GIGP Y KA R G+R+ DLL
Sbjct: 118 SDSDLEVGTTGRGIGPTYEDKAGRRGVRVGDLL 150
Score = 74.0 bits (182), Expect = 6e-15
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 201 EKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFEE 260
+ E+ ++ G E G T R RR GWLD+P+L++ + +G+T L I +D+L +E
Sbjct: 304 PDEEELATYIREEGGEYGTVTGRPRRVGWLDMPMLRHAARASGFTGLAINHIDVLAGLDE 363
Query: 261 IKIGVAYKRHGKTLHYFPSNSSELAKVE 288
+K+G +Y+ G+ L P+ + A+ E
Sbjct: 364 VKVGHSYELDGEELLTMPATTERWARCE 391
>gnl|CDD|172324 PRK13787, PRK13787, adenylosuccinate synthetase; Provisional.
Length = 423
Score = 152 bits (385), Expect = 3e-43
Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 23/225 (10%)
Query: 44 TVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPK 103
++V+G QWGDEGK KV+D L+ D D++ R QGG NAGHTVVV +Y FHLVPSG+I +
Sbjct: 4 SLVVGTQWGDEGKAKVIDFLSKDTDIIVRYQGGANAGHTVVVHGKKYVFHLVPSGVIYDQ 63
Query: 104 AKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKG 163
+IGNGVV+ +E + + +G KD+LL+SD HL+F +H Q+D +E
Sbjct: 64 TICVIGNGVVLDPLFFIEECDRLQKEGFP-VKDKLLLSDACHLLFPYHSQIDSARETTSS 122
Query: 164 -KKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTK 222
+ +GTTKKGIG Y+ K R G+R+ DLL D +L+ + V K
Sbjct: 123 QEHKIGTTKKGIGICYADKMMRTGLRVGDLL---------DKSYKRRLKHL-----VDEK 168
Query: 223 RKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAY 267
+ +P + Y + +G L + I AY
Sbjct: 169 NRELDKLYGMPPVSYNDINDGL-------KFFLSKVGKNIINTAY 206
Score = 87.3 bits (216), Expect = 2e-19
Identities = 40/90 (44%), Positives = 56/90 (62%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ L++ G E G TT R RRCGW D+ +LK++ +NG T + +TK+DIL ++
Sbjct: 280 TELLGEAGEVLRQKGGEFGATTGRPRRCGWFDVEMLKHSVRINGITSIALTKIDILSDYD 339
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVEY 289
I + V YK +GKTL FPS E + Y
Sbjct: 340 TIPVAVGYKLNGKTLDCFPSQGLEKVEPLY 369
>gnl|CDD|237505 PRK13783, PRK13783, adenylosuccinate synthetase; Provisional.
Length = 404
Score = 145 bits (368), Expect = 9e-41
Identities = 74/175 (42%), Positives = 105/175 (60%), Gaps = 4/175 (2%)
Query: 45 VVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
V++G QWGDEGKGKVV L+ D+V R GG NAGHTV + HL+PS
Sbjct: 4 VIVGLQWGDEGKGKVVTYLSRYYDIVVRYSGGANAGHTVNYGDFKVVHHLLPSADFKKNV 63
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGK 164
+ IGNGVV+ L L +EL++ + K + R+ IS+ AH+V H+++D + E+ + K
Sbjct: 64 GAAIGNGVVLDLEVLVEELEELKEKF-PDYSGRIFISELAHVVLPVHKELDEIIESVR-K 121
Query: 165 KSLGTTKKGIGPAYSSKATRNGIRIADLLGD--FNVFTEKDSEIGDKLQRIGNEV 217
++GTTK+GIGPAY+ K R G+R+ADL + F EK + KL I +V
Sbjct: 122 NAIGTTKRGIGPAYADKVMRVGVRLADLFDEEKLREFLEKILSLYKKLYGIEFDV 176
Score = 95.2 bits (237), Expect = 3e-22
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+KL++ G+E G TT R RRCGWLD+PLL+Y V+G L +TK D+L+ FE
Sbjct: 270 TELFGEEGEKLRKAGHEYGATTGRPRRCGWLDLPLLRYAIEVSGVDSLVMTKADVLNGFE 329
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
+IK+ V Y+ GK + PS+ +L K E
Sbjct: 330 KIKVCVRYEIGGKEVRD-PSSLRDLEKAE 357
>gnl|CDD|184325 PRK13786, PRK13786, adenylosuccinate synthetase; Provisional.
Length = 424
Score = 143 bits (362), Expect = 8e-40
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 3/163 (1%)
Query: 44 TVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPK 103
T++ GAQ+GDEGKGK+VD+LA D D+V R QGG+NAGHTV V Y HL+PSG +
Sbjct: 3 TIITGAQFGDEGKGKIVDLLAKDYDIVARFQGGDNAGHTVKVGDEVYKLHLIPSGFL-LD 61
Query: 104 AKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKG 163
A+ +IG GVV++ L +E+ E G+ ++L I + ++ +H ++DGL+E+ +
Sbjct: 62 ARVLIGPGVVLNPEVLAEEIDMLEKHGVKVDAEKLGIDAKTSIIMPYHIELDGLRESART 121
Query: 164 KKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
+K +GTTK+GIG AY K R+ +R++DL+ D + E+
Sbjct: 122 EK-IGTTKRGIGFAYIDKIARDEVRMSDLV-DKERLMRRLEEL 162
Score = 99.5 bits (248), Expect = 9e-24
Identities = 43/89 (48%), Positives = 57/89 (64%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE E G+ LQ +G E G TT R RRCGW D+PLLK +NGYT++ +TKLD+L +
Sbjct: 279 TELKDEAGEHLQDVGGEFGTTTGRPRRCGWFDLPLLKKAIYLNGYTEIALTKLDVLTGLD 338
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
IKI V Y+ G+ L Y P +S+LA+
Sbjct: 339 PIKICVGYELDGEILDYPPELTSDLARCV 367
>gnl|CDD|172322 PRK13784, PRK13784, adenylosuccinate synthetase; Provisional.
Length = 428
Score = 137 bits (346), Expect = 2e-37
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 45 VVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKA 104
V++GAQWGDEGKGK+ D LA ADLV R QGGNNAGHT+VV+ + HL+PSG+++
Sbjct: 5 VIVGAQWGDEGKGKIADTLAEKADLVVRYQGGNNAGHTLVVNGKKTFLHLIPSGVLHQHT 64
Query: 105 KSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAEKGK 164
K +IG+GVV+ L +E+ + + KG+ + L +S+ ++ +H+ +D ++E+ +
Sbjct: 65 KCVIGHGVVLDPVALDEEITRLQAKGIAISAENLFVSESCTIITSYHKLLDAVRESNTSE 124
Query: 165 KSLGTTKKGIGPAYSSKATRNGIRIADLL 193
K +GTT KGIGPAY K +R GI+ L
Sbjct: 125 K-IGTTGKGIGPAYEDKVSRKGIKFKHLF 152
Score = 76.2 bits (187), Expect = 1e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
TE ++G +Q G E+GVTT R RRCGWLD+PLLKY++ + T + +TK+D+L +
Sbjct: 280 TELFDDVGKFIQHKGGEIGVTTGRIRRCGWLDLPLLKYSAKCSNLTSIALTKVDVLSDMD 339
Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
+K+ + YK GK + Y +L KVE
Sbjct: 340 TLKVCIGYKYEGKEI-YCAYPGIDLYKVE 367
>gnl|CDD|179812 PRK04293, PRK04293, adenylosuccinate synthetase; Provisional.
Length = 333
Score = 98.8 bits (247), Expect = 6e-24
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 43 VTVVLGAQWGDEGKGKVVDMLAV--DADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGII 100
T+V+G +GDEGKGK++ LA+ ++ R G NAGHTV + +Y ++PSG +
Sbjct: 3 CTIVVGGFFGDEGKGKIIAYLALKDKPSIIARGGVGPNAGHTVEYNGKKYGLRMIPSGFV 62
Query: 101 NPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEA 160
N AK IG GV++ L E+++ R+ + R ++ + H + D +
Sbjct: 63 NKDAKLAIGAGVLVDPEVLLKEVEE------LNVGGRVFVDYRCGIIEEKHVEED--RSD 114
Query: 161 EKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDF 196
E K +G+T G GPA + + +R L D
Sbjct: 115 EHLSKKIGSTGTGCGPANADRV----LRRLKLAKDV 146
Score = 51.8 bits (125), Expect = 1e-07
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 216 EVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILD 256
E G T R+RR G D L + + +NG T++ ITKLD LD
Sbjct: 246 EYGTVTGRRRRVGPFDFELARRAARINGATQIAITKLDKLD 286
>gnl|CDD|173544 PTZ00351, PTZ00351, adenylosuccinate synthetase; Provisional.
Length = 710
Score = 77.0 bits (189), Expect = 1e-15
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 14/182 (7%)
Query: 41 HKVTVVLGAQWGDEGKGKVVDMLAVDADLVC--RCQGGNNAGHTVVVDS-TEYDFHLVPS 97
H V +V GA +GDEGKGK VD +A C R G NAGHTV + ++ F+L PS
Sbjct: 169 HDVIMVAGAFFGDEGKGKTVDAVAHHPLCTCIARVNSGENAGHTVYDKAGRKFVFNLAPS 228
Query: 98 GIINPKAKSIIGNGVVIHLPGLFD-ELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDG 156
G++ P ++ IG V+ + E+ + + G+ ++DRL I + +V +H+ +D
Sbjct: 229 GLLLPGKRNYIGPECVMDPVSFMEKEIIQLIDAGID-YRDRLFIGNVC-IVTPYHKLLDL 286
Query: 157 LQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFT---EKDSEIGDKLQRI 213
L G + +T KG+ P + SK + GIR+ + D EKD + L ++
Sbjct: 287 L-----GSAANSSTLKGMAPVHGSKVMKRGIRLDHIFNDDETLRKRLEKDMDTYLGLLKV 341
Query: 214 GN 215
N
Sbjct: 342 KN 343
Score = 35.4 bits (81), Expect = 0.032
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 176 PAYSSKATRNGI----RIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLD 231
P + KA NGI +D GD+N+ Q G E G TK+ R CG+ D
Sbjct: 520 PHSNDKARHNGIMAPVEYSDETGDYNIGVAMAIA---SAQHHG-ECGAVTKKPRVCGFFD 575
Query: 232 IPLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAY 267
L + + G L I+ LD D ++++ + +AY
Sbjct: 576 CVLQHEVNSIQG-PYLTISALDRGDEYDKVGVTIAY 610
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase.
Length = 534
Score = 36.2 bits (83), Expect = 0.018
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 56 KGKVVDMLAVDADLVCRCQ--GGNNAGHTVVVDSTEYDFHLVPSGI--INPKAKSIIGNG 111
KGKV + A++ D R Q GG++A +V ++TE H++ + + ++PK S++ N
Sbjct: 278 KGKVPVLEAMEKDQRVRSQFRGGSSA---IVANNTEKP-HVIAAKLQALSPKYNSVM-NH 332
Query: 112 VVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLV-FDFHQQVDGLQEAEKGKKSLGTT 170
+ IHLP LF L NK + D ++ +D + L D + +V+G E +G+ +
Sbjct: 333 IRIHLPELFPSL----NKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMS 388
Query: 171 KK 172
KK
Sbjct: 389 KK 390
>gnl|CDD|147951 pfam06072, Herpes_US9, Alphaherpesvirus tegument protein US9. This
family consists of several US9 and related proteins from
the Alphaherpesviruses. The function of the US9 protein
is unknown although in Bovine herpesvirus 5 Us9 is
essential for the anterograde spread of the virus from
the olfactory mucosa to the bulb.
Length = 60
Score = 27.0 bits (60), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 199 FTEKDSEI-GDKLQRIGNEVGVTTKRKRRCG 228
++E D+E + L+R+G +R+RRCG
Sbjct: 3 YSESDNETATEFLRRVGRRQHAIRRRRRRCG 33
>gnl|CDD|226491 COG4002, COG4002, Predicted phosphotransacetylase [General function
prediction only].
Length = 256
Score = 28.6 bits (64), Expect = 3.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 33 KTGENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGN--NAGH-TVVVDST- 88
+TG PK V V+ G + GD G+ K VD D + V GN + H ++++
Sbjct: 133 RTGIEPK---VAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGILIEEAL 189
Query: 89 -EYDFHLVPSGI 99
+ + + GI
Sbjct: 190 KDGNVIIAVDGI 201
>gnl|CDD|199985 TIGR00009, L28, ribosomal protein L28. This model describes
bacterial and chloroplast forms of the 50S ribosomal
protein L28, a polypeptide about 60 amino acids in
length. Mitochondrial homologs differ substantially in
architecture and are not included [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 56
Score = 26.1 bits (58), Expect = 4.6
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 14 MARSCETEQTTCKKTMNGN-------KTGE--NPKLHKVTVVLGAQW 51
M+R C Q T K ++GN KT P L K V + ++
Sbjct: 1 MSRKC---QLTGKGPLSGNNVSHSHRKTKRRFKPNLQKKRVWVDGRF 44
>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
polymerase delta, subunit B [DNA replication,
recombination, and repair].
Length = 481
Score = 28.1 bits (63), Expect = 5.5
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 159 EAEKGKKSLGTTKKG------IGPAYSSKATRNG---IRIADLLGDFNVFTEKDSEIGDK 209
E + + +G IG + T+NG I + D G V KD E G
Sbjct: 123 EEARYVSPIKKDLEGGSDVKIIGEVNDVRETKNGHFIISLEDTTGVVTVVLGKDREAGRF 182
Query: 210 LQRI 213
+ +
Sbjct: 183 VVDV 186
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional.
Length = 264
Score = 28.0 bits (63), Expect = 5.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 196 FNVFTEKDSEIGDKL 210
FNVFT++D E+ K
Sbjct: 244 FNVFTDEDLELYQKA 258
>gnl|CDD|234153 TIGR03270, methan_mark_4, putative methanogen marker protein 4.
Members of this protein family, to date, are found in a
completed prokaryotic genome if and only if the species
is one of the archaeal methanogens. The exact function
is unknown, but likely is linked to methanogenesis or a
process closely linked to it. Some members have been
suggested to be a methyltransferase, based on the
proximity of its gene to genes of the multi-subunit
complex, N5-methyl-tetrahydromethanopterin--coenzyme M
methyltransferase. That context is not conserved,
however. The family shows similarity to various
phosphate acyltranferases [Energy metabolism,
Methanogenesis].
Length = 202
Score = 27.3 bits (61), Expect = 7.3
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 33 KTGENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGN 77
+ G PK V V+ G + GD G+ VD D +L+ R
Sbjct: 86 RLGREPK---VAVLSGGRLGDVGRSPEVDRSIADGELIARLLKDG 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.402
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,716,342
Number of extensions: 1399027
Number of successful extensions: 1001
Number of sequences better than 10.0: 1
Number of HSP's gapped: 972
Number of HSP's successfully gapped: 42
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)