RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3917
         (295 letters)



>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
           metal- binding, purine metabolism, nucleotide-binding,
           GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
           PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
           1mf0_A* 1mf1_A* 2dgn_A*
          Length = 459

 Score =  290 bits (745), Expect = 2e-96
 Identities = 121/182 (66%), Positives = 148/182 (81%), Gaps = 5/182 (2%)

Query: 37  NPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVP 96
            P  ++VTVVLGAQWGDEGKGKVVD+LA DAD+VCRCQGGNNAGHTVVVDS EYDFHL+P
Sbjct: 27  RPGGNRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLP 86

Query: 97  SGIINPKAKSIIGNGVVIHLPGLFDELQKNENKG--LTGWKDRLLISDRAHLVFDFHQQV 154
           SGIINP   + IGNGVVIHLPGLF+E +KN  KG  L GW+ RL+ISDRAH+VFDFHQ  
Sbjct: 87  SGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAA 146

Query: 155 DGLQEAEKGK---KSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQ 211
           DG+QE ++ +   K+LGTTKKGIGP YSSKA R+G+R+ DL+ DF+ F+E+   + ++ +
Sbjct: 147 DGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQYK 206

Query: 212 RI 213
            I
Sbjct: 207 SI 208



 Score =  151 bits (385), Expect = 6e-43
 Identities = 55/89 (61%), Positives = 67/89 (75%)

Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
           TE+D+EIG+ LQ  G E GVTT RKRRCGWLD+ LLKY  M+NG+T L +TKLDILD F 
Sbjct: 314 TEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFT 373

Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
           EIK+GVAYK  G+ + + P+N   L KVE
Sbjct: 374 EIKVGVAYKLDGEIIPHIPANQEVLNKVE 402


>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
           {Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
          Length = 443

 Score =  285 bits (733), Expect = 1e-94
 Identities = 96/178 (53%), Positives = 124/178 (69%), Gaps = 3/178 (1%)

Query: 26  KKTMNGNKTGENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVV- 84
             +      G    L +V+ VLG QWGDEGKGK+VD+LA   D+V RCQGG NAGHT+  
Sbjct: 4   ADSAATESLGRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYN 63

Query: 85  VDSTEYDFHLVPSGIINPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRA 144
            +  ++  HLVPSGI+N     +IGNGVV+HLPGLF E+   E+ G++  K R+L+SDRA
Sbjct: 64  SEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVS-CKGRILVSDRA 122

Query: 145 HLVFDFHQQVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
           HL+FDFHQ+VDGL+E+E  K  +GTTK+GIGPAYSSK  RNGIR+ DL    +   +K
Sbjct: 123 HLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLR-HMDTLPQK 179



 Score =  148 bits (375), Expect = 1e-41
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
           TE     GD L+  G E G TT R RRCGWLDI  LK++  +NG+  L +TKLD+L    
Sbjct: 298 TENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLN 357

Query: 260 EIKIGVAYKRH-GKTLHYFPSNSSELAKVE 288
           EI++GVAYKR  G  +  FP +   L ++ 
Sbjct: 358 EIQLGVAYKRSDGTPVKSFPGDLRLLEELH 387


>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
           {Plasmodium falciparum} SCOP: c.37.1.10
          Length = 442

 Score =  284 bits (729), Expect = 3e-94
 Identities = 81/184 (44%), Positives = 119/184 (64%), Gaps = 7/184 (3%)

Query: 32  NKTGENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYD 91
           +   +N     V  +LGAQWGDEGKGK++DML+  +D+ CR  GG NAGHT+ V+  +Y 
Sbjct: 5   DHQIKNVDKGNVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYA 64

Query: 92  FHLVPSGIINPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFH 151
            HL+P G++     S++GNG+VIH+  L +E++    K L    DRL +S++AH++FD H
Sbjct: 65  LHLLPCGVLYDNNISVLGNGMVIHVKSLMEEIESVGGKLL----DRLYLSNKAHILFDIH 120

Query: 152 QQVDGLQEAEK--GKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDK 209
           Q +D +QE +K    K +GTTK+GIGP YS+KA+R GIR+  L  +F  F    S++ D 
Sbjct: 121 QIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLK-NFENFKNMYSKLIDH 179

Query: 210 LQRI 213
           L  +
Sbjct: 180 LMDL 183



 Score =  141 bits (358), Expect = 3e-39
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
           TE ++++G  L+  G+E G TTKR RRCGWLDIP+L Y   +N    + +TKLD+L   E
Sbjct: 288 TELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLE 347

Query: 260 EIKIGVAY--KRHGKTLHY--FPSNSSELAKVE 288
           EI + V +  K+ G+ L    +P       + E
Sbjct: 348 EILLCVNFKNKKTGELLEKGCYPVEEEISEEYE 380


>3r7t_A Adenylosuccinate synthetase; structural genomics, center for
           structural genomics of infec diseases, csgid, alpha-beta
           fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter
           jejuni}
          Length = 419

 Score =  255 bits (653), Expect = 4e-83
 Identities = 75/161 (46%), Positives = 99/161 (61%), Gaps = 6/161 (3%)

Query: 42  KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
           K  +++G QWGDEGKGKVVD L  + D VCR  GG+NAGHT+ V+   Y  HL+PSG+++
Sbjct: 6   KADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTIWVNGVRYALHLMPSGVLH 65

Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
           P+  +IIGNGVV+    L  E+           K RL ISDRAHL    H  +D  +E  
Sbjct: 66  PRCINIIGNGVVVSPEVLIAEM-----AQFENLKGRLYISDRAHLNLKHHSLIDIAKEKL 120

Query: 162 KGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
           KGK ++GTT KGIGP+Y+ K  R G R+ +LL +     E 
Sbjct: 121 KGKNAIGTTGKGIGPSYADKINRTGHRVGELL-EPQRLCEA 160



 Score =  137 bits (349), Expect = 4e-38
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 3/89 (3%)

Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
           TE   E G+K+ +IG E+GV+T RKRRCGW D   ++YT+ +NG   L + KLD+LD FE
Sbjct: 279 TEDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGFE 338

Query: 260 EIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
           +IKI  AY+  G  + Y P   S+L  V+
Sbjct: 339 KIKICRAYEYKGMEIDYIP---SDLENVQ 364


>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
           IMP-aspartate ligase, struc genomics; 1.95A
           {Burkholderia thailandensis}
          Length = 452

 Score =  248 bits (637), Expect = 3e-80
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 33  KTGENPKLHKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDF 92
            +  N    +  VV+G QWGDEGKGK+VD L   A  V R QGG+NAGHT+++   +   
Sbjct: 7   ASAVNVTPGRNVVVVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLIIGGKKTIL 66

Query: 93  HLVPSGIINPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQ 152
            L+PSGI+       IGNGVV+    LF E+ + E  GL+  ++RL IS+   L+  +H 
Sbjct: 67  RLIPSGIMREGVACYIGNGVVLSPEALFKEIGELEEAGLS-VRERLFISEATTLILPYHI 125

Query: 153 QVDGLQEAEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
            +D  +EA KG   +GTT +GIGPAY  K  R  +R+ DL  D   F ++
Sbjct: 126 AIDQAREARKGAGKIGTTGRGIGPAYEDKVGRRALRVQDLF-DARTFADR 174



 Score =  138 bits (349), Expect = 7e-38
 Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 193 LGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKL 252
           L D +  + +D +IG  L  +G E G  T R RR GWLD   L+ +  +NG + LC+TKL
Sbjct: 296 LYDADNPSRQD-QIGITLANVGKEFGSVTGRPRRTGWLDAAALRRSIQINGVSGLCMTKL 354

Query: 253 DILDTFEEIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
           D+LD  +E+K+ V YK  G+     P  ++E+A+ E
Sbjct: 355 DVLDGLDEVKLCVGYKIDGEDADLLPRGAAEVARCE 390


>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
           associated factor, PURA, purine ribonucleotide
           biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
           PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
           1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
           1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
           ...
          Length = 432

 Score =  245 bits (628), Expect = 4e-79
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 2/161 (1%)

Query: 42  KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
           K  VVLG QWGDEGKGKVVD+L   A  V R QGG+NAGHT+V++  +   HL+PSGI+ 
Sbjct: 3   KNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILR 62

Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
               SIIGNGVV+    L  E+ + E +G+   ++RLL+S+   L+  +H  +D  +E  
Sbjct: 63  ENVISIIGNGVVLAPDALMKEMTELEARGVP-VRERLLLSEACPLILPYHVALDNAREKA 121

Query: 162 KGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEK 202
           +G K++GTT +GIGPAY  K  R G+R++DL  +   F  K
Sbjct: 122 RGAKAIGTTGRGIGPAYEDKVARRGLRVSDLF-NKETFAIK 161



 Score =  137 bits (347), Expect = 1e-37
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDTFE 259
           TE + E G+ L++ GNE G TT R RR GWLDI  ++    +N  +  C+TKLD+LD  +
Sbjct: 281 TELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLDGLK 340

Query: 260 EIKIGVAYK-RHGKTLHYFPSNSSELAKVE 288
           E+K+ V Y+   G+ +   P  +     +E
Sbjct: 341 EVKLCVGYRMPDGREVDTTPLAAEGWEGIE 370


>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved
           hypothetical protein, NPPSFA; 2.50A {Pyrococcus
           horikoshii}
          Length = 339

 Score =  231 bits (592), Expect = 7e-75
 Identities = 53/178 (29%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 42  KVTVVLGAQWGDEGKGKVVDMLAV--DADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGI 99
              +V+G QWGDEGKG +V  L++  + +++ R   G NAGH+VV++  +Y    +P+G 
Sbjct: 2   PSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTGF 61

Query: 100 INPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQE 159
           +  KA+ +IG GV++     F EL++ ++  +   KDR+ I  R  ++ + H+Q+D    
Sbjct: 62  MQTKARLLIGAGVLVDPEVFFHELEQLKDFNV---KDRVGIDYRCAIIEEKHKQLDRTNG 118

Query: 160 AEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEV 217
              GK  +GTT  G GPA + +  R   +  D + +   +    ++  +     G+ V
Sbjct: 119 YLHGK--IGTTGSGCGPANADRVMRKAKQAKD-VKELEPYLTDVAQEINDALDEGSLV 173



 Score = 90.0 bits (224), Expect = 7e-21
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 200 TEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDT 257
           TE   E  D+L     E G  T R+RR GW D  + +Y++ +NG T L +T LD  D 
Sbjct: 235 TEMPMEEADRLG--LVEYGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLDKYDK 290


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.60
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 158 QEAEKGKKSLGTTKKGIGPAYSSKAT 183
           Q  +K + SL        PA + KAT
Sbjct: 20  QALKKLQASLKLYADDSAPALAIKAT 45


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 1.3
 Identities = 38/210 (18%), Positives = 59/210 (28%), Gaps = 81/210 (38%)

Query: 100 INPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQE 159
            NP+  SII             E  ++       WK               H   D L  
Sbjct: 325 TNPRRLSIIA------------ESIRDGLATWDNWK---------------HVNCDKLTT 357

Query: 160 AEKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDK-LQRIGNEVG 218
               + SL      + PA          R   +    +VF    + I    L  I     
Sbjct: 358 II--ESSL----NVLEPAE--------YR--KMFDRLSVF-PPSAHIPTILLSLI----- 395

Query: 219 VTTKRKRRCGWLDIP----------LLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYK 268
                     W D+           L KY S+V    K   + + I   + E+K+ +  +
Sbjct: 396 ----------WFDVIKSDVMVVVNKLHKY-SLVEKQPKE--STISIPSIYLELKVKLENE 442

Query: 269 R--HGKTL-HY-----FPSNSSELAKVEYY 290
              H   + HY     F S+      ++ Y
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472


>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
           superfamily, protease hydrolase, stress response; 2.15A
           {Deinococcus radiodurans}
          Length = 190

 Score = 29.1 bits (66), Expect = 1.3
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 60  VDMLAVDADLVCRCQGGNNAGHTVVVDST-------EYDFHLVPSGIINP 102
            ++++++   +   +G         VD         +YD  L+P G +NP
Sbjct: 39  TELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP 88


>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
           X-RAY, structure, structural genomics, PSI-2; 2.40A
           {Bifidobacterium longum NCC2705}
          Length = 343

 Score = 29.1 bits (66), Expect = 1.5
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 100 INPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRA 144
           I+P    ++G G V+    +   + +          D  + S+  
Sbjct: 284 IHPGRIDVVGGGAVV-WSRVLARVSEAAKADHGEAIDSFVASEHG 327


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 3.0
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 49/100 (49%)

Query: 52   GDEGKGKVVDMLAVD----------------ADLVCRCQGG-------NNAGHTVVVDST 88
             DE       M+A++                 + V +  G        N      V    
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA--- 1855

Query: 89   EYDFHLVPSG----------IINP-KAKSIIGNGVVIHLP 117
                    +G          ++N  K + I     +I L 
Sbjct: 1856 --------AGDLRALDTVTNVLNFIKLQKI----DIIELQ 1883


>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur
           genomics/proteomics initiative, RSGI, structural
           genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP:
           d.79.1.2 PDB: 1ode_A* 1ui9_A*
          Length = 122

 Score = 27.0 bits (60), Expect = 3.5
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 225 RRCGWLDIPLLKYTSM-VNGYTKLCITKLDILDT 257
           R+ G   +PLL    + V G     I  L + +T
Sbjct: 63  RQIGMHRVPLLSAREVPVPGSLPRVIRVLALWNT 96


>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
           1B; SAM domain, tandem, signaling protein, alternative
           splicing, ANK repeat; NMR {Homo sapiens}
          Length = 148

 Score = 27.1 bits (59), Expect = 4.4
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 227 CGWLD-IPLLKYTS--MVNGYTKLCITKLDILDTFEEIKIGVAYKRHGKTLHYFPSN 280
             WL+ I L +Y +  M NG+  +     ++++  + ++IG+    H + +      
Sbjct: 18  GQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQL 74


>1xho_A Chorismate mutase; southeast collaboratory for structural genomics,
           secsg, protein structure initiative, PSI, structural
           genomics; 2.20A {Clostridium thermocellum} SCOP:
           d.79.1.2
          Length = 148

 Score = 26.7 bits (59), Expect = 6.5
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 225 RRCGWLDIPLLKYTSM-VNGYTKLCITKLDILDT 257
           R  GW    L+    + V G  + CI  +  ++T
Sbjct: 92  RNMGWTSTALMCMNEIDVPGSLEKCIRVMMHVNT 125


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0843    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,561,083
Number of extensions: 277018
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 26
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)