RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3917
(295 letters)
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 201 bits (512), Expect = 1e-62
Identities = 123/179 (68%), Positives = 142/179 (79%), Gaps = 3/179 (1%)
Query: 41 HKVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGII 100
+VTVVLGAQWGDEGKGKVVD+LA DAD+V RCQGGNNAGHTVVVD EYDFHL+PSGII
Sbjct: 4 SRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGII 63
Query: 101 NPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEA 160
N KA S IGNGVVIHLPGLF+E +KNE KGL W+ RL+ISDRAHLVFDFHQ VDGLQE
Sbjct: 64 NTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEV 123
Query: 161 EKG---KKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNE 216
++ K++GTTKKGIGP YSSKA R G+RI DLL DF+ F+ + + + Q +
Sbjct: 124 QRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPT 182
Score = 84.0 bits (207), Expect = 7e-19
Identities = 54/92 (58%), Positives = 68/92 (73%)
Query: 197 NVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILD 256
TE+ +EIGD LQ G+E GVTT RKRRCGWLD+ +L+Y MVNG+T L +TKLDILD
Sbjct: 282 AFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILD 341
Query: 257 TFEEIKIGVAYKRHGKTLHYFPSNSSELAKVE 288
EIK+G++YK +GK + YFP+N L KVE
Sbjct: 342 VLSEIKVGISYKLNGKRIPYFPANQEILQKVE 373
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 200 bits (509), Expect = 6e-62
Identities = 77/165 (46%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 42 KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
VVLG QWGDEGKGK+VD+L A V R QGG+NAGHT+V++ + HL+PSGI+
Sbjct: 2 NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILR 61
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
SIIGNGVV+ L E+++ E++G+ ++RLL+S+ L+ D+H +D +E
Sbjct: 62 ENVTSIIGNGVVLSPAALMKEMKELEDRGIP-VRERLLLSEACPLILDYHVALDNAREKA 120
Query: 162 KGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
+G K++GTT +GIGPAY K R G+R+ DL D F EK E+
Sbjct: 121 RGAKAIGTTGRGIGPAYEDKVARRGLRVGDLF-DKETFAEKLKEV 164
Score = 80.1 bits (197), Expect = 1e-17
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 173 GIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDI 232
G+GP Y + +G TE E G+ L + GNE G TT R+RR GWLD
Sbjct: 253 GLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDT 312
Query: 233 PLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKRH-GKTLHYFPSNSSELAKVE 288
++ +N + C+TKLD+LD +E+K+ VAY+ G+ + P + + VE
Sbjct: 313 VAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVE 369
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 190 bits (484), Expect = 2e-58
Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 7/167 (4%)
Query: 42 KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIIN 101
V +LGAQWGDEGKGK++DML+ +D+ CR GG NAGHT+ V+ +Y HL+P G++
Sbjct: 2 NVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLY 61
Query: 102 PKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEAE 161
S++GNG+VIH+ L +E++ K DRL +S++AH++FD HQ +D +QE +
Sbjct: 62 DNNISVLGNGMVIHVKSLMEEIESVGGK----LLDRLYLSNKAHILFDIHQIIDSIQETK 117
Query: 162 --KGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEI 206
K K +GTTK+GIGP YS+KA+R GIR+ L +F F S++
Sbjct: 118 KLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLK-NFENFKNMYSKL 163
Score = 66.6 bits (162), Expect = 4e-13
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 198 VFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDIPLLKYTSMVNGYTKLCITKLDILDT 257
TE ++++G L+ G+E G TTKR RRCGWLDIP+L Y +N + +TKLD+L
Sbjct: 273 FLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSG 332
Query: 258 FEEIKIGVAYKRHGK----TLHYFPSNSSELAKVE 288
EEI + V +K +P + E
Sbjct: 333 LEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYE 367
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 185 bits (471), Expect = 2e-56
Identities = 94/173 (54%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 42 KVTVVLGAQWGDEGKGKVVDMLAVDADLVCRCQGGNNAGHTVV-VDSTEYDFHLVPSGII 100
+V+ VLG QWGDEGKGK+VD+LA D+V RCQGG NAGHT+ + ++ HLVPSGI+
Sbjct: 6 QVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGIL 65
Query: 101 NPKAKSIIGNGVVIHLPGLFDELQKNENKGLTGWKDRLLISDRAHLVFDFHQQVDGLQEA 160
N +IGNGVV+HLPGLF E+ E+ G K R+L+SDRAHL+FDFHQ+VDGL+E+
Sbjct: 66 NEDTTCVIGNGVVVHLPGLFKEIDGLESNG-VSCKGRILVSDRAHLLFDFHQEVDGLRES 124
Query: 161 EKGKKSLGTTKKGIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRI 213
E K +GTTK+GIGPAYSSK RNGIR+ DL + +K +
Sbjct: 125 ELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLR-HMDTLPQKLDLLLSDAAAR 176
Score = 72.8 bits (178), Expect = 4e-15
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 173 GIGPAYSSKATRNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTTKRKRRCGWLDI 232
GI P+ +G TE GD L+ G E G TT R RRCGWLDI
Sbjct: 257 GIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDI 316
Query: 233 PLLKYTSMVNGYTKLCITKLDILDTFEEIKIGVAYKRH-GKTLHYFPSNSSELAKVE 288
LK++ +NG+ L +TKLD+L EI++GVAYKR G + FP + L ++
Sbjct: 317 VALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELH 373
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 29.0 bits (63), Expect = 0.68
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 184 RNGIRIADLLGDFNVFTEKDSEIGDKLQRIGNEVGVTT 221
+ A+L G + T ++S + L+++ + GVT
Sbjct: 35 WDQTVPAELRGKYLALTAQESNMVQHLKQL-SASGVTH 71
>d1ufya_ d.79.1.2 (A:) Chorismate mutase {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 26.2 bits (58), Expect = 2.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 225 RRCGWLDIPLLKYTSM-VNGYTKLCITKLDILDT 257
R+ G +PLL + V G I L + +T
Sbjct: 63 RQIGMHRVPLLSAREVPVPGSLPRVIRVLALWNT 96
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum
[TaxId: 1515]}
Length = 112
Score = 26.2 bits (58), Expect = 2.7
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 225 RRCGWLDIPLLKYTSM-VNGYTKLCI 249
R GW L+ + V G + CI
Sbjct: 61 RNMGWTSTALMCMNEIDVPGSLEKCI 86
>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate
adenylyltransferase small subunit, C-terminal domain
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 135
Score = 24.7 bits (53), Expect = 9.1
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 1/111 (0%)
Query: 4 SSIVTAVHFIMARSCETEQTTCKKTMNGNKTGENPKLHKVTVVLGAQWGDEGKGKVVDML 63
I +V + + E + G E K+ G+ GK +
Sbjct: 26 CKIHHSVVGLRSCISE-GAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRA 84
Query: 64 AVDADLVCRCQGGNNAGHTVVVDSTEYDFHLVPSGIINPKAKSIIGNGVVI 114
+D + V + E D + + SGI+ ++I +G++I
Sbjct: 85 IIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.402
Gapped
Lambda K H
0.267 0.0368 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,104,674
Number of extensions: 51364
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 12
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.8 bits)