Query psy3918
Match_columns 668
No_of_seqs 382 out of 2746
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:42:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 5E-123 1E-127 932.6 52.2 539 55-636 34-645 (663)
2 KOG0102|consensus 100.0 7E-104 1E-108 822.9 43.0 550 54-641 24-634 (640)
3 PTZ00186 heat shock 70 kDa pre 100.0 7.7E-97 2E-101 839.5 65.3 541 56-636 26-627 (657)
4 PTZ00400 DnaK-type molecular c 100.0 6.5E-95 1.4E-99 830.0 66.7 547 56-643 40-647 (663)
5 PLN03184 chloroplast Hsp70; Pr 100.0 9.8E-94 2.1E-98 820.6 68.1 545 56-642 38-644 (673)
6 PTZ00009 heat shock 70 kDa pro 100.0 4.5E-94 9.7E-99 823.7 65.3 552 54-647 1-628 (653)
7 PRK13411 molecular chaperone D 100.0 1.1E-93 2.4E-98 819.6 66.3 539 57-636 2-603 (653)
8 PRK00290 dnaK molecular chaper 100.0 8.4E-93 1.8E-97 813.0 69.6 539 57-638 2-601 (627)
9 PRK13410 molecular chaperone D 100.0 5.5E-93 1.2E-97 811.6 67.1 538 57-636 2-605 (668)
10 KOG0101|consensus 100.0 7.4E-93 1.6E-97 771.4 44.2 540 54-635 4-615 (620)
11 CHL00094 dnaK heat shock prote 100.0 1E-89 2.2E-94 785.3 66.4 537 57-635 2-600 (621)
12 TIGR02350 prok_dnaK chaperone 100.0 1.6E-89 3.5E-94 783.4 67.1 532 58-633 1-594 (595)
13 TIGR01991 HscA Fe-S protein as 100.0 1E-88 2.2E-93 772.3 66.8 526 59-634 1-585 (599)
14 PRK05183 hscA chaperone protei 100.0 6.9E-88 1.5E-92 767.0 65.0 525 56-634 18-601 (616)
15 PRK01433 hscA chaperone protei 100.0 1.8E-84 3.8E-89 732.7 63.0 510 57-638 19-587 (595)
16 COG0443 DnaK Molecular chapero 100.0 1.1E-81 2.5E-86 705.9 53.8 512 56-634 4-578 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 1.4E-80 3E-85 715.0 55.4 532 59-634 1-602 (602)
18 KOG0103|consensus 100.0 1.5E-75 3.2E-80 628.2 47.6 522 58-625 2-639 (727)
19 KOG0104|consensus 100.0 9.6E-67 2.1E-71 560.3 45.2 533 55-637 20-740 (902)
20 PRK11678 putative chaperone; P 100.0 8.9E-45 1.9E-49 396.7 28.2 277 59-372 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.5E-28 3.3E-33 262.3 26.7 267 60-372 6-324 (336)
22 PRK13929 rod-share determining 100.0 3.2E-28 6.9E-33 259.2 27.3 265 59-369 6-324 (335)
23 TIGR00904 mreB cell shape dete 99.9 1E-25 2.2E-30 240.4 26.7 266 60-371 5-327 (333)
24 PRK13927 rod shape-determining 99.9 1.7E-25 3.7E-30 238.9 25.5 265 58-371 6-324 (334)
25 PRK13930 rod shape-determining 99.9 1E-24 2.3E-29 233.0 25.8 268 59-372 10-329 (335)
26 TIGR02529 EutJ ethanolamine ut 99.8 1.9E-20 4.1E-25 189.5 17.2 167 169-367 39-238 (239)
27 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 4E-19 8.7E-24 185.7 17.1 265 59-370 3-320 (326)
28 PRK15080 ethanolamine utilizat 99.8 4.1E-18 8.8E-23 175.5 21.6 169 169-369 66-267 (267)
29 COG1077 MreB Actin-like ATPase 99.7 2.4E-16 5.1E-21 158.9 21.6 270 58-373 7-333 (342)
30 TIGR01174 ftsA cell division p 99.5 3.3E-13 7.2E-18 146.2 21.2 127 234-368 225-371 (371)
31 PRK09472 ftsA cell division pr 99.5 7.3E-12 1.6E-16 137.6 23.0 129 235-370 234-387 (420)
32 COG0849 ftsA Cell division ATP 99.0 3.7E-08 8.1E-13 106.2 23.8 284 58-372 7-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.0 2.7E-09 5.8E-14 115.9 12.1 265 59-371 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 98.7 1.3E-07 2.9E-12 102.7 14.7 264 58-371 2-347 (373)
35 PTZ00280 Actin-related protein 98.3 2.8E-05 6E-10 85.7 18.6 65 285-349 263-338 (414)
36 PF00022 Actin: Actin; InterP 98.2 1.6E-05 3.5E-10 86.9 14.0 68 305-372 290-368 (393)
37 PTZ00452 actin; Provisional 98.1 3.1E-05 6.7E-10 84.0 14.4 85 286-370 246-348 (375)
38 PRK13917 plasmid segregation p 98.1 0.0004 8.7E-09 74.5 21.4 77 292-375 264-340 (344)
39 COG4820 EutJ Ethanolamine util 98.1 5.3E-05 1.1E-09 72.0 11.8 162 175-368 77-271 (277)
40 PTZ00281 actin; Provisional 98.0 7E-05 1.5E-09 81.4 14.0 84 287-370 248-349 (376)
41 PTZ00004 actin-2; Provisional 97.9 0.00014 3.1E-09 79.1 14.0 84 287-370 249-351 (378)
42 PTZ00466 actin-like protein; P 97.9 0.00015 3.2E-09 78.9 13.9 85 286-370 251-353 (380)
43 PF11104 PilM_2: Type IV pilus 97.9 0.00015 3.3E-09 77.7 12.9 74 296-369 245-339 (340)
44 TIGR03739 PRTRC_D PRTRC system 97.0 0.018 3.9E-07 61.2 15.0 46 322-369 272-318 (320)
45 PF02782 FGGY_C: FGGY family o 96.7 0.0024 5.3E-08 62.6 5.2 48 323-371 149-196 (198)
46 COG4972 PilM Tfp pilus assembl 96.5 0.43 9.3E-06 49.6 20.3 53 298-350 260-314 (354)
47 TIGR00241 CoA_E_activ CoA-subs 96.5 0.0074 1.6E-07 61.7 7.6 68 296-368 180-248 (248)
48 TIGR03192 benz_CoA_bzdQ benzoy 96.5 0.01 2.2E-07 61.4 8.3 47 325-371 241-288 (293)
49 PRK15027 xylulokinase; Provisi 96.1 0.012 2.7E-07 66.2 7.6 52 323-374 386-437 (484)
50 PLN02669 xylulokinase 96.0 0.02 4.4E-07 65.5 8.4 72 298-371 421-492 (556)
51 TIGR01315 5C_CHO_kinase FGGY-f 95.9 0.02 4.2E-07 65.5 8.1 83 291-374 411-493 (541)
52 TIGR03286 methan_mark_15 putat 95.7 0.029 6.2E-07 60.4 7.5 46 325-370 357-402 (404)
53 TIGR02261 benz_CoA_red_D benzo 95.4 0.062 1.4E-06 54.8 8.4 45 325-369 213-262 (262)
54 PRK00047 glpK glycerol kinase; 95.3 0.044 9.6E-07 62.0 7.8 78 296-374 375-453 (498)
55 COG1924 Activator of 2-hydroxy 95.3 0.057 1.2E-06 57.0 7.8 73 295-371 317-390 (396)
56 TIGR01311 glycerol_kin glycero 95.3 0.039 8.4E-07 62.4 7.3 78 296-374 371-449 (493)
57 TIGR02259 benz_CoA_red_A benzo 95.2 0.059 1.3E-06 57.6 7.8 45 325-369 383-432 (432)
58 TIGR01312 XylB D-xylulose kina 95.2 0.053 1.1E-06 61.0 8.1 51 323-374 390-440 (481)
59 PTZ00186 heat shock 70 kDa pre 95.1 0.23 5.1E-06 57.9 13.3 40 419-458 403-442 (657)
60 TIGR02628 fuculo_kin_coli L-fu 95.1 0.045 9.7E-07 61.4 7.1 78 296-374 365-443 (465)
61 PTZ00294 glycerol kinase-like 95.1 0.057 1.2E-06 61.2 8.0 77 297-374 379-456 (504)
62 TIGR01234 L-ribulokinase L-rib 95.0 0.056 1.2E-06 61.7 7.7 51 323-374 435-486 (536)
63 PRK04123 ribulokinase; Provisi 95.0 0.053 1.1E-06 62.1 7.4 77 297-374 412-489 (548)
64 TIGR01175 pilM type IV pilus a 95.0 0.057 1.2E-06 58.0 7.2 73 297-369 254-347 (348)
65 PRK10331 L-fuculokinase; Provi 94.8 0.063 1.4E-06 60.3 7.2 76 298-374 363-439 (470)
66 TIGR02627 rhamnulo_kin rhamnul 94.7 0.071 1.5E-06 59.6 7.4 51 323-375 387-437 (454)
67 PLN02295 glycerol kinase 94.7 0.073 1.6E-06 60.4 7.5 79 295-374 378-462 (512)
68 TIGR01314 gntK_FGGY gluconate 94.4 0.09 1.9E-06 59.6 7.4 51 323-374 401-451 (505)
69 COG5277 Actin and related prot 94.2 0.94 2E-05 50.1 14.5 48 323-370 362-417 (444)
70 PRK10640 rhaB rhamnulokinase; 94.2 0.1 2.2E-06 58.5 7.1 50 323-374 375-424 (471)
71 PRK10939 autoinducer-2 (AI-2) 94.1 0.1 2.2E-06 59.4 7.1 51 323-374 409-459 (520)
72 PF07520 SrfB: Virulence facto 94.1 3.7 8.1E-05 49.1 19.6 90 285-379 730-842 (1002)
73 PRK13317 pantothenate kinase; 94.1 0.099 2.1E-06 54.2 6.1 48 323-370 222-273 (277)
74 KOG2517|consensus 93.9 0.19 4.2E-06 55.8 8.3 70 302-375 396-465 (516)
75 PTZ00009 heat shock 70 kDa pro 93.9 8.4 0.00018 45.2 22.4 37 422-458 390-426 (653)
76 KOG0102|consensus 93.5 0.025 5.3E-07 61.9 0.6 47 414-460 398-444 (640)
77 KOG2531|consensus 93.1 0.27 5.9E-06 52.9 7.4 55 315-370 434-488 (545)
78 PLN03184 chloroplast Hsp70; Pr 92.3 3.9 8.5E-05 48.1 16.4 39 420-458 416-454 (673)
79 KOG0100|consensus 91.8 0.11 2.4E-06 54.8 2.6 42 420-461 416-457 (663)
80 COG1070 XylB Sugar (pentulose 91.3 0.53 1.1E-05 53.3 7.7 50 322-372 400-449 (502)
81 smart00842 FtsA Cell division 89.2 1.5 3.3E-05 42.5 8.0 35 166-201 43-77 (187)
82 KOG0676|consensus 89.1 3.4 7.4E-05 44.4 11.0 31 317-347 284-314 (372)
83 PTZ00400 DnaK-type molecular c 87.7 15 0.00033 43.1 16.3 39 420-458 418-456 (663)
84 PF06406 StbA: StbA protein; 86.5 1.7 3.8E-05 46.1 7.0 67 294-366 247-316 (318)
85 PF01869 BcrAD_BadFG: BadF/Bad 86.4 2.9 6.3E-05 43.1 8.5 69 298-369 198-271 (271)
86 PRK01433 hscA chaperone protei 85.3 22 0.00048 41.2 15.7 39 420-458 359-397 (595)
87 PRK13410 molecular chaperone D 85.3 40 0.00086 39.7 17.9 41 419-459 378-418 (668)
88 COG1069 AraB Ribulose kinase [ 85.1 1.9 4.2E-05 47.9 6.5 59 312-374 423-481 (544)
89 KOG0681|consensus 84.4 1.2 2.6E-05 49.2 4.4 67 306-372 539-615 (645)
90 TIGR03281 methan_mark_12 putat 84.1 4.8 0.0001 41.7 8.4 55 324-380 263-320 (326)
91 KOG0679|consensus 83.9 33 0.00071 36.8 14.5 24 324-347 342-365 (426)
92 CHL00094 dnaK heat shock prote 82.4 37 0.00081 39.6 16.2 39 420-458 379-417 (621)
93 PRK13411 molecular chaperone D 82.4 36 0.00077 40.0 16.0 40 419-458 378-417 (653)
94 PRK00976 hypothetical protein; 80.8 6.3 0.00014 41.6 8.0 56 323-380 263-320 (326)
95 PRK00290 dnaK molecular chaper 80.2 45 0.00097 39.0 15.8 40 419-458 376-415 (627)
96 COG0554 GlpK Glycerol kinase [ 79.8 5.7 0.00012 43.7 7.5 83 288-374 365-452 (499)
97 TIGR02350 prok_dnaK chaperone 79.0 30 0.00066 40.1 13.9 39 420-458 375-413 (595)
98 TIGR00555 panK_eukar pantothen 78.7 4 8.8E-05 42.3 5.8 46 322-367 229-278 (279)
99 TIGR01991 HscA Fe-S protein as 78.4 41 0.0009 39.0 14.7 37 423-459 368-404 (599)
100 PRK05183 hscA chaperone protei 77.7 85 0.0018 36.6 17.0 38 422-459 383-420 (616)
101 PF00370 FGGY_N: FGGY family o 77.1 2.4 5.2E-05 42.9 3.7 18 58-75 1-18 (245)
102 PF06277 EutA: Ethanolamine ut 76.1 41 0.00088 37.4 12.8 47 289-335 209-265 (473)
103 KOG0101|consensus 72.6 2.9 6.3E-05 47.7 3.1 47 420-466 390-436 (620)
104 PLN00130 succinate dehydrogena 72.4 0.42 9.1E-06 44.9 -2.9 41 37-77 36-77 (213)
105 smart00732 YqgFc Likely ribonu 72.2 3.5 7.7E-05 35.0 3.0 18 58-75 2-19 (99)
106 COG1070 XylB Sugar (pentulose 69.8 4.8 0.00011 45.6 4.2 23 55-77 2-24 (502)
107 PF07318 DUF1464: Protein of u 69.3 15 0.00033 39.0 7.3 53 322-374 259-318 (343)
108 PF03652 UPF0081: Uncharacteri 68.6 5.7 0.00012 36.5 3.6 21 57-77 1-21 (135)
109 PRK03011 butyrate kinase; Prov 67.9 9.4 0.0002 41.2 5.7 45 323-367 295-343 (358)
110 TIGR00241 CoA_E_activ CoA-subs 64.9 5.4 0.00012 40.6 3.0 19 59-77 2-20 (248)
111 PF03702 UPF0075: Uncharacteri 64.8 22 0.00047 38.4 7.6 70 296-370 260-336 (364)
112 PRK09585 anmK anhydro-N-acetyl 64.6 34 0.00074 36.9 9.0 66 302-370 268-337 (365)
113 cd06007 R3H_DEXH_helicase R3H 63.6 22 0.00048 27.5 5.4 38 181-220 6-43 (59)
114 PF08841 DDR: Diol dehydratase 63.3 6 0.00013 40.5 2.8 48 321-368 273-328 (332)
115 PRK10331 L-fuculokinase; Provi 62.1 6.4 0.00014 44.2 3.2 18 58-75 3-20 (470)
116 PF14450 FtsA: Cell division p 61.7 11 0.00023 33.7 4.0 21 59-79 1-21 (120)
117 PRK00109 Holliday junction res 61.3 9.3 0.0002 35.2 3.6 20 57-76 4-23 (138)
118 cd00529 RuvC_resolvase Hollida 59.8 11 0.00023 35.4 3.8 18 58-75 1-18 (154)
119 PRK10939 autoinducer-2 (AI-2) 59.5 8.7 0.00019 43.7 3.7 20 57-76 3-22 (520)
120 PTZ00294 glycerol kinase-like 58.8 8.8 0.00019 43.5 3.6 19 58-76 3-21 (504)
121 PRK00047 glpK glycerol kinase; 56.6 11 0.00023 42.7 3.8 19 57-75 5-23 (498)
122 TIGR02628 fuculo_kin_coli L-fu 56.3 10 0.00022 42.5 3.5 19 58-76 2-20 (465)
123 PRK04123 ribulokinase; Provisi 54.7 11 0.00024 43.2 3.6 19 57-75 3-21 (548)
124 COG0816 Predicted endonuclease 54.4 13 0.00028 34.4 3.2 21 57-77 2-22 (141)
125 TIGR01234 L-ribulokinase L-rib 54.1 11 0.00024 43.1 3.4 18 58-75 2-19 (536)
126 PRK15027 xylulokinase; Provisi 53.7 11 0.00024 42.5 3.2 19 58-76 1-19 (484)
127 TIGR01314 gntK_FGGY gluconate 52.8 12 0.00025 42.6 3.3 19 58-76 1-19 (505)
128 TIGR00143 hypF [NiFe] hydrogen 52.3 27 0.00059 41.2 6.3 48 323-370 658-711 (711)
129 cd02640 R3H_NRF R3H domain of 52.0 49 0.0011 25.8 5.6 40 180-220 5-44 (60)
130 TIGR03192 benz_CoA_bzdQ benzoy 51.7 14 0.00031 38.5 3.4 21 57-77 32-52 (293)
131 PLN02295 glycerol kinase 51.1 13 0.00028 42.3 3.3 18 58-75 1-18 (512)
132 TIGR01311 glycerol_kin glycero 50.8 14 0.0003 41.8 3.5 18 58-75 2-19 (493)
133 TIGR01315 5C_CHO_kinase FGGY-f 49.3 14 0.00031 42.2 3.3 17 59-75 2-18 (541)
134 PF02543 CmcH_NodU: Carbamoylt 48.2 48 0.001 35.8 6.9 82 288-374 131-216 (360)
135 TIGR02259 benz_CoA_red_A benzo 47.0 17 0.00036 39.5 3.0 22 57-78 2-23 (432)
136 TIGR03286 methan_mark_15 putat 46.9 19 0.00041 39.2 3.5 28 53-82 140-167 (404)
137 PRK00039 ruvC Holliday junctio 45.7 15 0.00033 34.9 2.3 19 57-75 2-20 (164)
138 cd02641 R3H_Smubp-2_like R3H d 44.9 66 0.0014 25.0 5.4 41 179-220 4-44 (60)
139 COG1382 GimC Prefoldin, chaper 44.1 2.4E+02 0.0052 25.3 12.8 49 587-639 66-114 (119)
140 TIGR03042 PS_II_psbQ_bact phot 43.7 1.9E+02 0.0042 26.7 9.0 73 533-605 29-110 (142)
141 PRK09604 UGMP family protein; 43.6 53 0.0011 35.0 6.4 59 306-369 242-306 (332)
142 PLN02669 xylulokinase 43.4 25 0.00053 40.5 4.0 20 56-75 7-26 (556)
143 PRK13317 pantothenate kinase; 42.8 22 0.00047 36.9 3.2 21 57-77 2-22 (277)
144 PF14574 DUF4445: Domain of un 42.8 42 0.00091 36.9 5.5 59 287-364 292-350 (412)
145 cd02646 R3H_G-patch R3H domain 42.2 63 0.0014 24.8 4.9 40 178-220 3-42 (58)
146 KOG0797|consensus 41.7 9.7 0.00021 42.0 0.4 51 323-373 526-591 (618)
147 PF13941 MutL: MutL protein 41.6 20 0.00044 39.8 2.8 43 59-108 2-46 (457)
148 PF02075 RuvC: Crossover junct 40.2 40 0.00086 31.4 4.2 17 59-75 1-17 (149)
149 COG5185 HEC1 Protein involved 40.1 3.5E+02 0.0077 29.9 11.5 81 536-617 280-373 (622)
150 PLN03170 chalcone synthase; Pr 39.5 73 0.0016 35.0 6.8 50 302-351 106-156 (401)
151 PLN03173 chalcone synthase; Pr 39.2 83 0.0018 34.4 7.1 59 293-351 92-152 (391)
152 PRK10719 eutA reactivating fac 39.0 1.6E+02 0.0035 32.8 9.2 106 60-218 9-115 (475)
153 PRK13321 pantothenate kinase; 38.9 31 0.00068 35.3 3.6 19 59-77 2-20 (256)
154 PF03646 FlaG: FlaG protein; 38.7 46 0.00099 29.0 4.1 45 498-549 54-99 (107)
155 TIGR03723 bact_gcp putative gl 38.4 76 0.0017 33.5 6.5 56 306-366 247-308 (314)
156 TIGR02261 benz_CoA_red_D benzo 38.2 37 0.0008 34.9 3.9 19 58-76 2-20 (262)
157 KOG1029|consensus 38.0 2.2E+02 0.0048 33.5 10.1 54 588-641 564-617 (1118)
158 PRK13318 pantothenate kinase; 37.6 32 0.0007 35.1 3.5 45 291-335 182-226 (258)
159 PLN03172 chalcone synthase fam 37.4 85 0.0018 34.4 6.9 50 302-351 102-152 (393)
160 PF00349 Hexokinase_1: Hexokin 37.3 33 0.00072 33.9 3.4 22 54-75 60-81 (206)
161 COG4457 SrfB Uncharacterized p 37.0 1.1E+02 0.0025 35.2 7.6 88 287-379 744-854 (1014)
162 COG3426 Butyrate kinase [Energ 36.9 53 0.0011 33.9 4.6 48 319-366 292-343 (358)
163 PF08006 DUF1700: Protein of u 36.9 1.3E+02 0.0029 28.7 7.5 56 569-631 6-63 (181)
164 PLN02377 3-ketoacyl-CoA syntha 36.3 86 0.0019 35.5 6.8 52 299-350 169-221 (502)
165 PF08614 ATG16: Autophagy prot 36.0 3E+02 0.0065 26.8 9.8 86 549-640 104-189 (194)
166 PLN03168 chalcone synthase; Pr 35.6 91 0.002 34.1 6.8 58 294-351 92-151 (389)
167 PRK10780 periplasmic chaperone 35.3 3.9E+02 0.0084 25.2 11.3 45 559-603 52-99 (165)
168 COG0145 HyuA N-methylhydantoin 34.5 4.2E+02 0.0091 31.3 12.1 27 58-84 279-305 (674)
169 COG5026 Hexokinase [Carbohydra 34.4 49 0.0011 36.2 4.2 27 55-81 73-102 (466)
170 COG1924 Activator of 2-hydroxy 34.4 35 0.00076 36.6 3.1 27 52-78 130-156 (396)
171 TIGR00250 RNAse_H_YqgF RNAse H 34.0 27 0.00059 31.8 2.0 17 60-76 1-17 (130)
172 COG4296 Uncharacterized protei 33.1 1.2E+02 0.0026 27.5 5.7 22 598-619 90-112 (156)
173 cd07313 terB_like_2 tellurium 32.8 3.1E+02 0.0066 23.3 9.7 68 531-598 13-81 (104)
174 KOG2517|consensus 32.5 97 0.0021 35.0 6.3 39 56-98 5-43 (516)
175 PRK13326 pantothenate kinase; 32.3 57 0.0012 33.5 4.2 23 56-78 5-27 (262)
176 KOG0103|consensus 32.2 1.4E+02 0.0031 34.6 7.6 43 588-630 671-724 (727)
177 TIGR02707 butyr_kinase butyrat 32.1 64 0.0014 34.7 4.8 44 323-366 293-340 (351)
178 COG5293 Predicted ATPase [Gene 30.9 4.3E+02 0.0094 29.2 10.4 64 572-639 373-436 (591)
179 COG4020 Uncharacterized protei 30.6 5.2E+02 0.011 26.4 10.2 57 321-379 266-325 (332)
180 PF08392 FAE1_CUT1_RppA: FAE1/ 30.6 1.1E+02 0.0024 31.8 6.0 45 306-350 87-132 (290)
181 PF07865 DUF1652: Protein of u 30.6 2.1E+02 0.0046 23.0 6.2 50 499-548 15-66 (69)
182 PRK14101 bifunctional glucokin 30.3 36 0.00078 39.9 2.7 26 50-75 11-36 (638)
183 PRK09557 fructokinase; Reviewe 30.3 93 0.002 32.4 5.6 47 323-369 244-299 (301)
184 PTZ00340 O-sialoglycoprotein e 30.1 1.3E+02 0.0029 32.2 6.6 39 304-347 249-287 (345)
185 PF02801 Ketoacyl-synt_C: Beta 29.7 57 0.0012 28.9 3.3 46 304-349 25-72 (119)
186 PLN02854 3-ketoacyl-CoA syntha 29.5 1.1E+02 0.0024 34.7 6.2 57 287-350 180-237 (521)
187 COG0443 DnaK Molecular chapero 29.5 28 0.0006 40.2 1.5 42 419-460 359-400 (579)
188 PRK13310 N-acetyl-D-glucosamin 29.0 92 0.002 32.4 5.3 47 323-369 245-300 (303)
189 cd02639 R3H_RRM R3H domain of 28.8 90 0.0019 24.3 3.8 28 193-220 17-44 (60)
190 PRK05082 N-acetylmannosamine k 28.7 2.1E+02 0.0046 29.5 7.9 48 323-370 233-287 (291)
191 PRK07515 3-oxoacyl-(acyl carri 28.7 89 0.0019 33.8 5.3 49 299-349 266-314 (372)
192 PRK09605 bifunctional UGMP fam 28.6 1.5E+02 0.0033 33.8 7.4 64 306-374 233-302 (535)
193 KOG0680|consensus 28.5 74 0.0016 33.4 4.2 27 58-84 4-30 (400)
194 PRK00292 glk glucokinase; Prov 27.8 55 0.0012 34.5 3.4 18 58-75 3-20 (316)
195 PLN02362 hexokinase 27.7 80 0.0017 35.8 4.7 22 54-75 92-113 (509)
196 PRK10869 recombination and rep 27.5 7.6E+02 0.016 28.4 12.7 40 585-625 318-357 (553)
197 PRK08868 flagellar protein Fla 27.2 1.4E+02 0.003 27.7 5.3 44 499-549 89-133 (144)
198 COG0533 QRI7 Metal-dependent p 27.2 1.7E+02 0.0037 31.2 6.7 75 291-370 233-310 (342)
199 TIGR01312 XylB D-xylulose kina 27.0 36 0.00078 38.1 1.9 16 60-75 1-16 (481)
200 PF10158 LOH1CR12: Tumour supp 26.8 3E+02 0.0064 25.1 7.4 20 569-588 102-121 (131)
201 KOG1794|consensus 26.8 1.6E+02 0.0034 30.7 6.1 50 325-374 265-319 (336)
202 TIGR00744 ROK_glcA_fam ROK fam 26.5 1E+02 0.0022 32.3 5.2 48 323-370 251-309 (318)
203 PF03978 Borrelia_REV: Borreli 26.3 4E+02 0.0086 25.0 8.0 12 538-549 29-40 (160)
204 KOG3758|consensus 25.9 7.2E+02 0.016 28.7 11.4 96 534-631 27-128 (655)
205 TIGR02627 rhamnulo_kin rhamnul 25.2 34 0.00074 38.1 1.3 16 60-75 1-16 (454)
206 TIGR00370 conserved hypothetic 25.1 1.2E+02 0.0025 30.0 4.8 67 173-239 56-134 (202)
207 PRK07738 flagellar protein Fla 24.9 1.7E+02 0.0036 26.2 5.2 44 499-549 64-108 (117)
208 COG3028 Uncharacterized protei 24.8 6.2E+02 0.013 24.2 9.9 47 576-624 133-179 (187)
209 COG1334 FlaG Uncharacterized f 24.7 1.7E+02 0.0037 26.2 5.3 42 499-547 67-109 (120)
210 KOG2002|consensus 24.7 4.7E+02 0.01 31.8 10.2 22 353-374 596-617 (1018)
211 PRK13320 pantothenate kinase; 24.5 82 0.0018 32.0 3.8 21 58-78 3-23 (244)
212 KOG0104|consensus 24.2 8.1E+02 0.018 29.1 11.6 51 583-633 774-836 (902)
213 TIGR00067 glut_race glutamate 23.7 1.5E+02 0.0033 30.1 5.6 41 323-366 172-212 (251)
214 cd00327 cond_enzymes Condensin 23.6 2.3E+02 0.0049 28.2 6.9 45 306-350 11-57 (254)
215 PLN02192 3-ketoacyl-CoA syntha 23.6 1.6E+02 0.0035 33.4 6.1 51 300-350 174-225 (511)
216 TIGR01175 pilM type IV pilus a 23.5 90 0.002 33.2 4.1 19 57-75 3-21 (348)
217 PF11932 DUF3450: Protein of u 23.5 7.8E+02 0.017 24.9 11.5 88 540-627 49-142 (251)
218 PRK00488 pheS phenylalanyl-tRN 23.4 5.4E+02 0.012 27.5 9.7 37 582-625 47-83 (339)
219 PRK06065 acetyl-CoA acetyltran 23.4 1.5E+02 0.0033 32.4 5.9 44 306-350 33-80 (392)
220 PLN02405 hexokinase 22.8 90 0.002 35.2 4.0 22 54-75 92-113 (497)
221 PRK13331 pantothenate kinase; 22.3 1.1E+02 0.0023 31.4 4.0 23 56-78 6-28 (251)
222 PRK06840 hypothetical protein; 22.3 1.3E+02 0.0029 31.8 5.1 48 303-350 54-104 (339)
223 PLN03171 chalcone synthase-lik 22.2 3.3E+02 0.0072 29.8 8.2 51 301-351 107-158 (399)
224 PLN02939 transferase, transfer 21.8 6.4E+02 0.014 31.0 10.8 45 534-578 237-281 (977)
225 PRK09258 3-oxoacyl-(acyl carri 21.6 2.7E+02 0.0057 29.4 7.2 48 303-350 62-111 (338)
226 PRK14158 heat shock protein Gr 21.5 7.7E+02 0.017 24.1 12.8 69 561-629 65-133 (194)
227 COG4709 Predicted membrane pro 21.2 4E+02 0.0086 25.9 7.2 52 582-636 15-68 (195)
228 COG0332 FabH 3-oxoacyl-[acyl-c 21.2 2.6E+02 0.0056 29.7 6.8 52 302-353 52-105 (323)
229 PF03484 B5: tRNA synthetase B 21.0 2.3E+02 0.0049 22.5 5.0 57 121-177 8-66 (70)
230 PRK12408 glucokinase; Provisio 20.9 78 0.0017 33.8 2.9 19 58-76 17-35 (336)
231 TIGR01865 cas_Csn1 CRISPR-asso 20.7 74 0.0016 38.4 2.9 19 58-76 2-20 (805)
232 KOG0243|consensus 20.3 1.3E+03 0.028 28.6 12.8 10 538-547 412-421 (1041)
233 TIGR00016 ackA acetate kinase. 20.2 5.7E+02 0.012 28.1 9.2 43 302-347 309-352 (404)
234 PF04848 Pox_A22: Poxvirus A22 20.1 1.2E+02 0.0025 28.2 3.4 20 57-76 1-20 (143)
No 1
>KOG0100|consensus
Probab=100.00 E-value=5.1e-123 Score=932.62 Aligned_cols=539 Identities=51% Similarity=0.808 Sum_probs=515.9
Q ss_pred CCceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCC
Q psy3918 55 VKGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDD 134 (668)
Q Consensus 55 ~~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d 134 (668)
..+.|||||||||||||+++.+|.++||.|++|+|.+||+|+|+++ +|++|++|++++..||+||+++.||||||.|+|
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d 112 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFND 112 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCC
Confidence 4678999999999999999999999999999999999999999965 999999999999999999999999999999999
Q ss_pred hHHHHhhccCceEEEEcCCCCeeEe--C--CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHH
Q psy3918 135 PEIKKDMKNLSYKIVRASNGDAWVQ--G--SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQAT 210 (668)
Q Consensus 135 ~~v~~~~~~~p~~~~~~~~~~~~i~--~--~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~ 210 (668)
+.+|+++++|||+++...+ .++++ . ...+.|+|+||++|+|.+||++||.|+|.+++++|+|||||||++||+|+
T Consensus 113 ~~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQAT 191 (663)
T KOG0100|consen 113 KSVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQAT 191 (663)
T ss_pred hhhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhh
Confidence 9999999999999997543 34433 2 34688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC--------------------------------------------CCeEEEEeccCCCcccccccC-----
Q psy3918 211 KDAGQIAGLN--------------------------------------------KGVFEVKSTNGDTLLGGEGLD----- 241 (668)
Q Consensus 211 ~~Aa~~AGl~--------------------------------------------~g~~~V~~~~gd~~lGG~~iD----- 241 (668)
++|+.+|||+ +|+|+|++++||++|||++||
T Consensus 192 KDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 192 KDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 9999999998 788999999999999999776
Q ss_pred -------------ccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHH
Q psy3918 242 -------------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVN 308 (668)
Q Consensus 242 -------------~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~ 308 (668)
++++.+++++|+++||+||+.||++.++.|.+++++++ .||+-++||+.||+|.-++|+.++.
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~Tlk 347 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLK 347 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhH
Confidence 46788999999999999999999999999999999876 6899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHh-CCCCCCCCCchhHHHhhHHHhhhhhcCC--CCceEEeeec
Q psy3918 309 PCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF-GKVPSRAVNPDEAVAIGAAVQGGVLAGD--VTDVLLLDVT 385 (668)
Q Consensus 309 ~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~F-g~~~~~~~npdeaVA~GAai~aa~ls~~--~~~~~~~d~~ 385 (668)
+++++|+++++.+++|+.|+|||||+|||.||++|+++| |+++++.+|||||||+|||+||+.||+. ..++++.|++
T Consensus 348 Pv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~ 427 (663)
T KOG0100|consen 348 PVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVN 427 (663)
T ss_pred HHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeec
Confidence 999999999999999999999999999999999999999 8899999999999999999999999994 4689999999
Q ss_pred cceeEEEEeCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEE
Q psy3918 386 PLSLGIETLGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEI 465 (668)
Q Consensus 386 ~~slgi~~~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i 465 (668)
|+++||++.+|.|+++||||+.||+++++. |+| +.|+|..+.|
T Consensus 428 pLtlGIETvGGVMTklI~RNTviPTkKSQv----------------------------FsT---------a~DnQ~tV~I 470 (663)
T KOG0100|consen 428 PLTLGIETVGGVMTKLIPRNTVIPTKKSQV----------------------------FST---------AQDNQPTVTI 470 (663)
T ss_pred cccceeeeecceeeccccCCcccCccccce----------------------------eee---------cccCCceEEE
Confidence 999999999999999999999999999998 999 9999999999
Q ss_pred EEeecCccccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccC-CCCCHHHHHHHHH
Q psy3918 466 KVHQGEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSS-GGLSKDEIENMVK 544 (668)
Q Consensus 466 ~i~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~ 544 (668)
.+|+||+.+.++|++||.|.++||||+|+|.|+|+|||++|.||||+|+|.|+++|+..+++|.+. +.|++|+|++|++
T Consensus 471 ~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~ 550 (663)
T KOG0100|consen 471 QVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVN 550 (663)
T ss_pred EEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 6799999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy3918 545 NAEQYATEDKVKRDRVEALNQAESIVHDTESKME---EFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTL 621 (668)
Q Consensus 545 ~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~---~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L 621 (668)
.+++|+++|+..+++.++||+||+|.|.+++.+. .+...+++++++++..++++..+||+.+..++.++|+++.++|
T Consensus 551 eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kel 630 (663)
T KOG0100|consen 551 EAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKEL 630 (663)
T ss_pred HHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3918 622 QQASLKLFEMAYKKM 636 (668)
Q Consensus 622 ~~~~~~i~~r~~~~~ 636 (668)
+..+.||....|...
T Consensus 631 e~vv~PiisklY~~a 645 (663)
T KOG0100|consen 631 EAVVQPIISKLYGGA 645 (663)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999999864
No 2
>KOG0102|consensus
Probab=100.00 E-value=6.7e-104 Score=822.86 Aligned_cols=550 Identities=74% Similarity=1.084 Sum_probs=534.8
Q ss_pred CCCceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCC
Q psy3918 54 GVKGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 133 (668)
Q Consensus 54 ~~~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 133 (668)
.....|+|||+||||||||++.+++|.++.|.+|.|.+||+|+|+.|+++++|..|++++..||.|+++.-||+|||+|+
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHH
Q psy3918 134 DPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDA 213 (668)
Q Consensus 134 d~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~A 213 (668)
|+++|++++.+||++++..+|+.|++. .|+.++|+++.+++|.+++++|+.|++..+.++|+|||||||+.||++|++|
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkda 182 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDA 182 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhh
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-------------------------------------------CCeEEEEeccCCCcccccccC---------
Q psy3918 214 GQIAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLD--------- 241 (668)
Q Consensus 214 a~~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD--------- 241 (668)
.++|||+ .|+|+|.++.||++|||++||
T Consensus 183 g~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 183 GQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred hhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 9999998 788999999999999999655
Q ss_pred ---------ccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHH
Q psy3918 242 ---------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQK 312 (668)
Q Consensus 242 ---------~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~ 312 (668)
+..+.++++||++++|++|+.||+..+++|++|++..|..|+.++++++||.+||+++.++++|++++|++
T Consensus 263 ~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~ 342 (640)
T KOG0102|consen 263 EFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKK 342 (640)
T ss_pred hhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEE
Q psy3918 313 ALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIE 392 (668)
Q Consensus 313 ~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~ 392 (668)
+|++|++..+||+.|+||||++|||+|++.++++||+.+...+||||+||.|||++++.+++++++++|+||+|++|||+
T Consensus 343 aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgie 422 (640)
T KOG0102|consen 343 ALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIE 422 (640)
T ss_pred HHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCc
Q psy3918 393 TLGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGER 472 (668)
Q Consensus 393 ~~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~ 472 (668)
+.+|.|+++|+||+.||+++++. |+| ..|+|+.+.|.++|||+
T Consensus 423 tlggvft~Li~rnttIptkksqv----------------------------fst---------aadgqt~V~ikv~qger 465 (640)
T KOG0102|consen 423 TLGGVFTKLIPRNTTIPTKKSQV----------------------------FST---------AADGQTQVEIKVFQGER 465 (640)
T ss_pred hhhhhheecccCCcccCchhhhh----------------------------eee---------cccCCceEEEEeeechh
Confidence 99999999999999999999998 999 99999999999999999
Q ss_pred cccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q psy3918 473 EMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATE 552 (668)
Q Consensus 473 ~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~ 552 (668)
+++.+|.+||+|.+.||||+|+|.|+|+|+|+||.|||++|+|.++.+++++++++..+++||+++++.|+..++.+...
T Consensus 466 e~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~ 545 (640)
T KOG0102|consen 466 EMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLAST 545 (640)
T ss_pred hhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 553 DKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMA 632 (668)
Q Consensus 553 D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~ 632 (668)
|+.++++.+..|..|+++|++...+.+|.+.++.+++.+|+..+..+.+.+.+.+..+.++++.+...|++...++|+.+
T Consensus 546 d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 546 DKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESA 625 (640)
T ss_pred hHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976555567999999999999999999999
Q ss_pred HHHHHhccc
Q psy3918 633 YKKMAAEKE 641 (668)
Q Consensus 633 ~~~~~~~~~ 641 (668)
|+.++....
T Consensus 626 ~k~~~~~~~ 634 (640)
T KOG0102|consen 626 YKNMGAGGE 634 (640)
T ss_pred HhhhcccCC
Confidence 999877766
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=7.7e-97 Score=839.55 Aligned_cols=541 Identities=61% Similarity=0.948 Sum_probs=509.0
Q ss_pred CceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCCh
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDP 135 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 135 (668)
.+.+|||||||||||||+++++.+++|+|..|.+.+||+|+|. ++.++||..|+.++..+|.++++++||+||+.+.|+
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~-~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEEC-CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 3469999999999999999999999999999999999999997 557899999999999999999999999999999999
Q ss_pred HHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 136 EIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 136 ~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
.++..++.|||.++...++..++....++.|+|++|++++|++|++.|+.++|.++.++||||||||++.||++|++||+
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 99999999999999988888888756678999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-------------------------------------------CCeEEEEeccCCCcccccccC-----------
Q psy3918 216 IAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLD----------- 241 (668)
Q Consensus 216 ~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD----------- 241 (668)
+|||+ +|.|+|+++.||.+|||++||
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f 264 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 99998 566788999999999999886
Q ss_pred -------ccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 242 -------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKAL 314 (668)
Q Consensus 242 -------~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L 314 (668)
+..+++++.+|+.+||++|+.||.+.++.+.++++..+.+++.++.++|||++|+++|+|+++++..+|+++|
T Consensus 265 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L 344 (657)
T PTZ00186 265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCM 344 (657)
T ss_pred hhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345788899999999999999999999999998765544445789999999999999999999999999999
Q ss_pred HHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEe
Q psy3918 315 QDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETL 394 (668)
Q Consensus 315 ~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~ 394 (668)
+++++++.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++.++++.+.|++|++|||++.
T Consensus 345 ~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~~ 424 (657)
T PTZ00186 345 KDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETL 424 (657)
T ss_pred HHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccceec
Confidence 99999999999999999999999999999999999888999999999999999999999988899999999999999999
Q ss_pred CCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccc
Q psy3918 395 GGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREM 474 (668)
Q Consensus 395 ~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~ 474 (668)
++.|.+||+||++||++++.. |+| ..|+|+.+.|.|||||+..
T Consensus 425 ~g~~~~iI~rnt~iP~~~~~~----------------------------f~t---------~~dnQ~~v~i~i~qGe~~~ 467 (657)
T PTZ00186 425 GGVFTRMIPKNTTIPTKKSQT----------------------------FST---------AADNQTQVGIKVFQGEREM 467 (657)
T ss_pred CCEEEEEEeCCCEeeEEEeec----------------------------ccc---------ccCCCceEEEEEEEecccc
Confidence 999999999999999999988 998 8999999999999999999
Q ss_pred cccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhH
Q psy3918 475 AADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDK 554 (668)
Q Consensus 475 ~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~ 554 (668)
+.+|..||+|+|.|+||.|+|.++|+|+|++|.||+|+|+|.+..||++..++|....+|+++++++|++.++++..+|+
T Consensus 468 ~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~ 547 (657)
T PTZ00186 468 AADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADR 547 (657)
T ss_pred cccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 555 VKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634 (668)
Q Consensus 555 ~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~ 634 (668)
..+++.+++|++|.+++.++..+++. ..++.++++.+.+.++.+++||++++ .+.+++++++++|++.+.++..++|+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 625 (657)
T PTZ00186 548 VKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMENPN-VAKDDLAAATDKLQKAVMECGRTEYQ 625 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999764 57899999999999999999998543 36799999999999999999998876
Q ss_pred HH
Q psy3918 635 KM 636 (668)
Q Consensus 635 ~~ 636 (668)
+.
T Consensus 626 ~~ 627 (657)
T PTZ00186 626 QA 627 (657)
T ss_pred hc
Confidence 55
No 4
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=6.5e-95 Score=829.99 Aligned_cols=547 Identities=64% Similarity=0.991 Sum_probs=516.8
Q ss_pred CceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCCh
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDP 135 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 135 (668)
++.+|||||||||||||++.++.+++|+|..|+|++||+|+|+.+++++||..|+.++.++|.++++++|||||+.++|+
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 34699999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 136 EIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 136 ~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
.++...+.+||.++...++..++. ..+..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||+
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 198 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIE-AQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGK 198 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEE-ECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999888888877 5678999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-------------------------------------------CCeEEEEeccCCCcccccccCc----------
Q psy3918 216 IAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI---------- 242 (668)
Q Consensus 216 ~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~---------- 242 (668)
+|||+ +|.|+|+++.||.+|||++||.
T Consensus 199 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f 278 (663)
T PTZ00400 199 IAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278 (663)
T ss_pred HcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHh
Confidence 99998 4567788899999999998773
Q ss_pred --------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 --------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKAL 314 (668)
Q Consensus 243 --------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L 314 (668)
..+++++.+|+.+||++|+.||.+.++.+.++.+..+..|+.++.++|||++|+++|+|+++++.++|+++|
T Consensus 279 ~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L 358 (663)
T PTZ00400 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCI 358 (663)
T ss_pred hhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999998876655556889999999999999999999999999999
Q ss_pred HHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEe
Q psy3918 315 QDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETL 394 (668)
Q Consensus 315 ~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~ 394 (668)
+++++.+.+|+.|+||||+||||+|+++|+++||.++...+|||+|||+|||++|+++++..+++.+.|++|++||+++.
T Consensus 359 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 438 (663)
T PTZ00400 359 KDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETL 438 (663)
T ss_pred HHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEec
Confidence 99999999999999999999999999999999999889999999999999999999999988899999999999999999
Q ss_pred CCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccc
Q psy3918 395 GGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREM 474 (668)
Q Consensus 395 ~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~ 474 (668)
++.|.++|+||+++|++++.. |++ ..|+|+.+.|.||||++..
T Consensus 439 ~g~~~~ii~~~t~iP~~~~~~----------------------------f~~---------~~d~q~~~~i~i~ege~~~ 481 (663)
T PTZ00400 439 GGVFTRLINRNTTIPTKKSQV----------------------------FST---------AADNQTQVGIKVFQGEREM 481 (663)
T ss_pred CCeeEEEEecCccCCccceee----------------------------eee---------ccCCCceEEEEEEEecCcc
Confidence 999999999999999999887 888 8899999999999999999
Q ss_pred cccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhH
Q psy3918 475 AADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDK 554 (668)
Q Consensus 475 ~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~ 554 (668)
+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..++++..+.+....+|++++++++++.+.+|..+|+
T Consensus 482 ~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~ 561 (663)
T PTZ00400 482 AADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDE 561 (663)
T ss_pred CCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999987788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 555 VKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634 (668)
Q Consensus 555 ~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~ 634 (668)
..+++.+++|+||+|||.+++.|+++...+++++++++.+.++++++||+.+ +.++|++++++|++.+.++..++|+
T Consensus 562 ~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~ 638 (663)
T PTZ00400 562 KKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYK 638 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988999999999999999999999999976 6899999999999999999999998
Q ss_pred HHHhcccCC
Q psy3918 635 KMAAEKESS 643 (668)
Q Consensus 635 ~~~~~~~~~ 643 (668)
+.+++++..
T Consensus 639 ~~~~~~~~~ 647 (663)
T PTZ00400 639 QGNSDNQQS 647 (663)
T ss_pred hhccccccc
Confidence 888877753
No 5
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=9.8e-94 Score=820.56 Aligned_cols=545 Identities=54% Similarity=0.834 Sum_probs=509.3
Q ss_pred CceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCCh
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDP 135 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 135 (668)
.+.+|||||||||||||++.+|.|++|+|..|++++||+|+|..+++++||..|+.++.++|.++++++|||||+++.|
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 3469999999999999999999999999999999999999998677899999999999999999999999999999876
Q ss_pred HHHHhhccCceEEEEcCCCCeeEeC-CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHH
Q psy3918 136 EIKKDMKNLSYKIVRASNGDAWVQG-SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAG 214 (668)
Q Consensus 136 ~v~~~~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa 214 (668)
++...+.+||.++...++.+.+.. ..+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++||
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456778899999988888877653 357789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-------------------------------------------CCeEEEEeccCCCcccccccCc---------
Q psy3918 215 QIAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI--------- 242 (668)
Q Consensus 215 ~~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~--------- 242 (668)
++|||+ ++.|+|+++.||.+|||++||.
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~ 275 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 275 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHH
Confidence 999998 4567789999999999998873
Q ss_pred ---------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 ---------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKA 313 (668)
Q Consensus 243 ---------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~ 313 (668)
..+++++.+|+.+||++|+.||.+.++.+.++++..+..++.++++.|||++|+++|.|+++++..+|+++
T Consensus 276 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~ 355 (673)
T PLN03184 276 FKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENA 355 (673)
T ss_pred HHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 24567889999999999999999999999998775544444678999999999999999999999999999
Q ss_pred HHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEE
Q psy3918 314 LQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIET 393 (668)
Q Consensus 314 L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~ 393 (668)
|+++++++.+|+.|+||||+||||.|+++|+++||..+...+|||+|||+|||++|+++++.++++.+.|++|++||+++
T Consensus 356 L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~slgi~~ 435 (673)
T PLN03184 356 LRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLET 435 (673)
T ss_pred HHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccceEEe
Confidence 99999999999999999999999999999999999988899999999999999999999998889999999999999999
Q ss_pred eCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCcc
Q psy3918 394 LGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGERE 473 (668)
Q Consensus 394 ~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~ 473 (668)
.++.+.++||||++||++++.. |++ ..|+|+.+.|.||||++.
T Consensus 436 ~~~~~~~ii~r~t~iP~~~~~~----------------------------f~t---------~~d~q~~v~i~i~~ge~~ 478 (673)
T PLN03184 436 LGGVMTKIIPRNTTLPTSKSEV----------------------------FST---------AADGQTSVEINVLQGERE 478 (673)
T ss_pred cCCeeEEEEeCCCccceecceE----------------------------eee---------ecCCCcEEEEEEEeeccc
Confidence 9999999999999999999888 988 889999999999999999
Q ss_pred ccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q psy3918 474 MAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATED 553 (668)
Q Consensus 474 ~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D 553 (668)
.+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..++++..+++....+|++++++++++.+.+|..+|
T Consensus 479 ~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D 558 (673)
T PLN03184 479 FVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKED 558 (673)
T ss_pred ccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999998778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 554 KVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAY 633 (668)
Q Consensus 554 ~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~ 633 (668)
+..+++.+++|++|+|||.++++|+++.+++++++++++++.|+++++||+++ +.+++++++++|.+.+.++..++|
T Consensus 559 ~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 559 KEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999976 678999999999999999999999
Q ss_pred HHHHhcccC
Q psy3918 634 KKMAAEKES 642 (668)
Q Consensus 634 ~~~~~~~~~ 642 (668)
+++++++++
T Consensus 636 ~~~~~~~~~ 644 (673)
T PLN03184 636 NQPGAGGAG 644 (673)
T ss_pred hcCCCCCCC
Confidence 888766654
No 6
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=4.5e-94 Score=823.74 Aligned_cols=552 Identities=49% Similarity=0.769 Sum_probs=509.1
Q ss_pred CCCceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCC
Q psy3918 54 GVKGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 133 (668)
Q Consensus 54 ~~~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 133 (668)
|.++.+||||||||||+||++.++.+++|+|..|+|++||+|+|. +++++||..|+.++.++|.++++++|||||+.++
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 79 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFD 79 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCC
Confidence 456789999999999999999999999999999999999999997 5679999999999999999999999999999999
Q ss_pred ChHHHHhhccCceEEEEcCCCCeeEeC---CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHH
Q psy3918 134 DPEIKKDMKNLSYKIVRASNGDAWVQG---SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQAT 210 (668)
Q Consensus 134 d~~v~~~~~~~p~~~~~~~~~~~~i~~---~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~ 210 (668)
|+.++...+.|||.++...++...+.. .....|+|++|++++|++|++.|+.++|.++.++|||||+||++.||++|
T Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~ 159 (653)
T PTZ00009 80 DSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQAT 159 (653)
T ss_pred chhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHH
Confidence 999999999999999988777665542 33478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC---------------------------------------------CCeEEEEeccCCCcccccccCc---
Q psy3918 211 KDAGQIAGLN---------------------------------------------KGVFEVKSTNGDTLLGGEGLDI--- 242 (668)
Q Consensus 211 ~~Aa~~AGl~---------------------------------------------~g~~~V~~~~gd~~lGG~~iD~--- 242 (668)
++||++|||+ ++.|+|+++.||.+|||++||.
T Consensus 160 ~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 160 KDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHH
Confidence 9999999998 4567788999999999998873
Q ss_pred ----------------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHH
Q psy3918 243 ----------------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKT 306 (668)
Q Consensus 243 ----------------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i 306 (668)
..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .+++++|||++|+++|+|+++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~ 315 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNT 315 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHH
Confidence 2357788999999999999999999999999887655 57999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhC-CCCCCCCCchhHHHhhHHHhhhhhcCC----CCceEE
Q psy3918 307 VNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFG-KVPSRAVNPDEAVAIGAAVQGGVLAGD----VTDVLL 381 (668)
Q Consensus 307 ~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg-~~~~~~~npdeaVA~GAai~aa~ls~~----~~~~~~ 381 (668)
..+|+++|+++++++.+|+.|+||||+||||+|+++|+++|+ ..+..++|||+|||+|||++|+++++. ++++.+
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~ 395 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLL 395 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEE
Confidence 999999999999999999999999999999999999999996 567889999999999999999999873 568899
Q ss_pred eeeccceeEEEEeCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcc
Q psy3918 382 LDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQT 461 (668)
Q Consensus 382 ~d~~~~slgi~~~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~ 461 (668)
.|++|++||++..++.+.++|++|++||++++.. |++ ..++|+
T Consensus 396 ~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~----------------------------f~t---------~~d~q~ 438 (653)
T PTZ00009 396 LDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQI----------------------------FTT---------YADNQP 438 (653)
T ss_pred EeecccccCccccCCceEEEEeCCCcCCccceeE----------------------------eEe---------ecCCCc
Confidence 9999999999999999999999999999999887 988 889999
Q ss_pred eEEEEEeecCccccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccC-CCCCHHHHH
Q psy3918 462 QVEIKVHQGEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSS-GGLSKDEIE 540 (668)
Q Consensus 462 ~~~i~i~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~-~~ls~~ei~ 540 (668)
.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..++++..+.+... ..|++++++
T Consensus 439 ~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~ 518 (653)
T PTZ00009 439 GVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADID 518 (653)
T ss_pred eEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHH
Confidence 9999999999999999999999999999999999989999999999999999999999999988888644 679999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy3918 541 NMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEE--FKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKAT 618 (668)
Q Consensus 541 ~~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~~--~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~ 618 (668)
++++.+.+|..+|+..+++.+++|+||+|||++|++|++ |..++++++++++++.++++++||++++.++.++|++++
T Consensus 519 ~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl 598 (653)
T PTZ00009 519 RMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQ 598 (653)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999999999999999999999963 899999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcccCCCCCC
Q psy3918 619 TTLQQASLKLFEMAYKKMA-AEKESSSGSS 647 (668)
Q Consensus 619 ~~L~~~~~~i~~r~~~~~~-~~~~~~~~~~ 647 (668)
++|++.+.++..|+|.+.. +++++|+||.
T Consensus 599 ~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~ 628 (653)
T PTZ00009 599 KEVESVCNPIMTKMYQAAGGGMPGGMPGGM 628 (653)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 9999999999999876543 4444444433
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-93 Score=819.58 Aligned_cols=539 Identities=56% Similarity=0.867 Sum_probs=504.9
Q ss_pred ceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
+.+|||||||||||||++.+|.+.+|+|..|+|.+||+|+|.++++++||..|+.++.++|.++++++|||||+.++|+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 36899999999999999999999999999999999999999867789999999999999999999999999999998864
Q ss_pred HHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQI 216 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~ 216 (668)
...+++||.++...++.+.+. ..+..++|+++++++|++|++.|+.++|.++.++||||||||++.||++|++||++
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~-i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 158 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQ-IRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTI 158 (653)
T ss_pred --HHhhcCCceEEecCCCceEEE-ECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999998888877666 46788999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--------------------------------------------CCeEEEEeccCCCcccccccCc----------
Q psy3918 217 AGLN--------------------------------------------KGVFEVKSTNGDTLLGGEGLDI---------- 242 (668)
Q Consensus 217 AGl~--------------------------------------------~g~~~V~~~~gd~~lGG~~iD~---------- 242 (668)
|||+ +|.|+|+++.||.+|||++||.
T Consensus 159 AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f 238 (653)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238 (653)
T ss_pred cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHH
Confidence 9998 4567888999999999998773
Q ss_pred --------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 --------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKAL 314 (668)
Q Consensus 243 --------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L 314 (668)
..+++++.+|+.+||++|+.||.+.++.++++++..+..++.++.+.|||++|+++|.|+++++.++|+++|
T Consensus 239 ~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L 318 (653)
T PRK13411 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQAL 318 (653)
T ss_pred HHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999998765544556889999999999999999999999999999
Q ss_pred HHcCCCCCCCceEEEecCccCcHHHHHHHHHHhC-CCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEE
Q psy3918 315 QDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFG-KVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIET 393 (668)
Q Consensus 315 ~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg-~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~ 393 (668)
+++++.+.+|+.|+||||+||||+|+++|+++|| ..+..++|||+|||+|||++|+++++.++++.+.|++|++||+++
T Consensus 319 ~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~ 398 (653)
T PRK13411 319 KDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIET 398 (653)
T ss_pred HHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEe
Confidence 9999999999999999999999999999999997 567889999999999999999999998899999999999999999
Q ss_pred eCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCcc
Q psy3918 394 LGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGERE 473 (668)
Q Consensus 394 ~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~ 473 (668)
.++.|.+||+||++||++++.. |++ ..++|+.+.|.||||++.
T Consensus 399 ~~~~~~~ii~r~t~iP~~~~~~----------------------------f~t---------~~d~q~~v~i~v~~ge~~ 441 (653)
T PRK13411 399 LGEVFTKIIERNTTIPTSKSQV----------------------------FST---------ATDGQTSVEIHVLQGERA 441 (653)
T ss_pred cCCceEEEEECCCcccceeeEE----------------------------EEe---------ccCCCeEEEEEEEEecCc
Confidence 9999999999999999999988 988 899999999999999999
Q ss_pred ccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q psy3918 474 MAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATED 553 (668)
Q Consensus 474 ~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D 553 (668)
.+.+|..||+|.+.++|+.+.|.++|+|+|++|.||+|+|++.+..+|++..+.+....+|++++++++++++.+|.++|
T Consensus 442 ~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D 521 (653)
T PRK13411 442 MAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEED 521 (653)
T ss_pred ccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988888777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 554 KVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAY 633 (668)
Q Consensus 554 ~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~ 633 (668)
+.++++.+++|+||+|||.+++.|+++...+++++++++++.++++++||+++ .++.++|++++++|++.+.++..+.|
T Consensus 522 ~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 522 RRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999984 45899999999999999999999998
Q ss_pred HHH
Q psy3918 634 KKM 636 (668)
Q Consensus 634 ~~~ 636 (668)
++.
T Consensus 601 ~~~ 603 (653)
T PRK13411 601 QQG 603 (653)
T ss_pred hhc
Confidence 653
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.4e-93 Score=813.04 Aligned_cols=539 Identities=66% Similarity=0.987 Sum_probs=507.4
Q ss_pred ceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
+.+|||||||||||||++.+|.+++++|..|++.+||+|+|..+++++||..|+.++.++|.++++++|||||++ ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 368999999999999999999999999999999999999998677999999999999999999999999999998 677
Q ss_pred HHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQI 216 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~ 216 (668)
++.+.+.+||.++...++...+. .+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||++
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 158 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVE-IDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKI 158 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEE-ECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 88889999999999888877776 56789999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-------------------------------------------CCeEEEEeccCCCcccccccCc-----------
Q psy3918 217 AGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI----------- 242 (668)
Q Consensus 217 AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~----------- 242 (668)
|||+ ++.|+|+++.||..|||++||.
T Consensus 159 AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 238 (627)
T PRK00290 159 AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFK 238 (627)
T ss_pred cCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHH
Confidence 9998 4467788999999999997763
Q ss_pred -------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 -------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQ 315 (668)
Q Consensus 243 -------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~ 315 (668)
..+++++.+|+.+||++|+.||.+..+.++++.+..+..|+.++.++|||++|+++|+|+++++..+|+++|+
T Consensus 239 ~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~ 318 (627)
T PRK00290 239 KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALK 318 (627)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999988765445568899999999999999999999999999999
Q ss_pred HcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEeC
Q psy3918 316 DADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLG 395 (668)
Q Consensus 316 ~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~~ 395 (668)
++++++.+|+.|+||||+||||+|+++|+++||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.+
T Consensus 319 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~ 398 (627)
T PRK00290 319 DAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLG 398 (627)
T ss_pred HcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecC
Confidence 99999999999999999999999999999999998899999999999999999999999889999999999999999999
Q ss_pred CEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCcccc
Q psy3918 396 GVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMA 475 (668)
Q Consensus 396 ~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~~ 475 (668)
+.|.+||+||+++|++++.. |++ ..++|+.+.|.+|||++..+
T Consensus 399 ~~~~~ii~~~t~~P~~~~~~----------------------------f~~---------~~d~q~~~~i~v~~ge~~~~ 441 (627)
T PRK00290 399 GVMTKLIERNTTIPTKKSQV----------------------------FST---------AADNQPAVTIHVLQGEREMA 441 (627)
T ss_pred CeEEEEecCCCcCCccceEE----------------------------EEe---------cCCCcceEEEEEEEeccccc
Confidence 99999999999999999888 988 89999999999999999999
Q ss_pred ccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhHH
Q psy3918 476 ADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKV 555 (668)
Q Consensus 476 ~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~ 555 (668)
.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..+|++..+++....+|++++++++++.+.++..+|+.
T Consensus 442 ~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~ 521 (627)
T PRK00290 442 ADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKK 521 (627)
T ss_pred CcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchh
Confidence 99999999999999999999989999999999999999999999999999999877889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 556 KRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKK 635 (668)
Q Consensus 556 ~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~~ 635 (668)
.+++.+++|+||+|+|.++++|+++...+++++++++.+.|+++++||+.+ +.++|++++++|++.+.++..++|++
T Consensus 522 ~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~ 598 (627)
T PRK00290 522 RKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQ 598 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988889999999999999999999999976 68999999999999999999998875
Q ss_pred HHh
Q psy3918 636 MAA 638 (668)
Q Consensus 636 ~~~ 638 (668)
.++
T Consensus 599 ~~~ 601 (627)
T PRK00290 599 AQA 601 (627)
T ss_pred ccc
Confidence 543
No 9
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.5e-93 Score=811.59 Aligned_cols=538 Identities=51% Similarity=0.830 Sum_probs=496.5
Q ss_pred ceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
+.+|||||||||||||++.+|.|.+|+|..|++++||+|+|.++++++||..|+.++..+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 469999999999999999999999999999999999999998778999999999999999999999999999999866
Q ss_pred HHHhhccCceEEEEcCCCCeeEeC-CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQG-SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
++...+.+||.+....+|.+.+.. ..++.|+|+++++++|++|++.|+.++|.++.++||||||||++.||++|++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 159 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGR 159 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 556678899999988888877653 3467899999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-------------------------------------------CCeEEEEeccCCCcccccccCc----------
Q psy3918 216 IAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI---------- 242 (668)
Q Consensus 216 ~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~---------- 242 (668)
+|||+ ++.|+|+++.||.+|||++||.
T Consensus 160 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f 239 (668)
T PRK13410 160 IAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQF 239 (668)
T ss_pred HcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHH
Confidence 99998 5567888999999999998773
Q ss_pred --------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 --------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKAL 314 (668)
Q Consensus 243 --------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L 314 (668)
..+++++.+|+.+||++|+.||.+..+.++++++..+..++.++.+.|||++|+++|.|+++++..+|+++|
T Consensus 240 ~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L 319 (668)
T PRK13410 240 LEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRAL 319 (668)
T ss_pred HhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235678889999999999999999999999998865544556889999999999999999999999999999
Q ss_pred HHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEe
Q psy3918 315 QDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETL 394 (668)
Q Consensus 315 ~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~ 394 (668)
+++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.
T Consensus 320 ~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~ 399 (668)
T PRK13410 320 KDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETI 399 (668)
T ss_pred HHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceec
Confidence 99999999999999999999999999999999999899999999999999999999999988999999999999999999
Q ss_pred CCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccc
Q psy3918 395 GGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREM 474 (668)
Q Consensus 395 ~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~ 474 (668)
++.+.++||||++||++++.. |++ ..++|+.+.|.||||++..
T Consensus 400 ~g~~~~li~rnt~iP~~~~~~----------------------------f~t---------~~dnq~~v~i~v~qGe~~~ 442 (668)
T PRK13410 400 GGVMKKLIPRNTTIPVRRSDV----------------------------FST---------SENNQSSVEIHVWQGEREM 442 (668)
T ss_pred CCeeEEEEeCCCccccccccc----------------------------cee---------ccCCCcEEEEEEEeecccc
Confidence 999999999999999999887 988 8999999999999999999
Q ss_pred cccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhH
Q psy3918 475 AADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDK 554 (668)
Q Consensus 475 ~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~ 554 (668)
+.+|..||+|.|.|+|++|.|.++|+|+|++|.||+|+|++.+..||++..+++....+|++++++++++++.+|..+|+
T Consensus 443 ~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~ 522 (668)
T PRK13410 443 ASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDR 522 (668)
T ss_pred ccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3918 555 VKRDRVEALNQAESIVHDTESKMEE----FKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFE 630 (668)
Q Consensus 555 ~~~~~~ea~N~lE~~i~~~~~~l~~----~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~ 630 (668)
.++++.+++|++|+|||+++++|.+ |..+++++++++++..|+++++||+.+ +.+++++++++|++...++..
T Consensus 523 ~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~---~~~~~~~~~~~~~~~l~~~~~ 599 (668)
T PRK13410 523 RRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD---DDRELDLAVADLQEALYGLNR 599 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999953 789999999999999999999999976 456677777766666666655
Q ss_pred HHHHHH
Q psy3918 631 MAYKKM 636 (668)
Q Consensus 631 r~~~~~ 636 (668)
.++...
T Consensus 600 ~~~~~~ 605 (668)
T PRK13410 600 EVRAEY 605 (668)
T ss_pred HHHHHH
Confidence 544433
No 10
>KOG0101|consensus
Probab=100.00 E-value=7.4e-93 Score=771.44 Aligned_cols=540 Identities=50% Similarity=0.775 Sum_probs=510.2
Q ss_pred CCCceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCC
Q psy3918 54 GVKGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 133 (668)
Q Consensus 54 ~~~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 133 (668)
+..+.+||||||||||||+++.++..+++.|+.|++.+||+|+|.+ .++++|.+|+.+...+|.++++++||++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~-~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTD-TERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecc-cccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 3456789999999999999999999999999999999999999984 489999999999999999999999999999999
Q ss_pred ChHHHHhhccCceEEEEcCCCCeeEeC---CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHH
Q psy3918 134 DPEIKKDMKNLSYKIVRASNGDAWVQG---SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQAT 210 (668)
Q Consensus 134 d~~v~~~~~~~p~~~~~~~~~~~~i~~---~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~ 210 (668)
|+.++.++++|||.+....++.+.+.. ...+.|+|+++++++|.++++.|+.++|..+.++|+|||+||++.||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 999999999999999966666666653 34578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC---------------------------------------------CCeEEEEeccCCCcccccccC----
Q psy3918 211 KDAGQIAGLN---------------------------------------------KGVFEVKSTNGDTLLGGEGLD---- 241 (668)
Q Consensus 211 ~~Aa~~AGl~---------------------------------------------~g~~~V~~~~gd~~lGG~~iD---- 241 (668)
++||.+|||+ +|.|.|+++.||++|||+++|
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 9999999998 456678899999999999765
Q ss_pred --------------ccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHH
Q psy3918 242 --------------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTV 307 (668)
Q Consensus 242 --------------~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~ 307 (668)
+..+++++.||+.+||.+|+.||+..++++.+.+|.++ .++...|||.+|+.++.+++.++.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHH
Confidence 56788999999999999999999999999999999876 589999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhC-CCCCCCCCchhHHHhhHHHhhhhhcCC----CCceEEe
Q psy3918 308 NPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFG-KVPSRAVNPDEAVAIGAAVQGGVLAGD----VTDVLLL 382 (668)
Q Consensus 308 ~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg-~~~~~~~npdeaVA~GAai~aa~ls~~----~~~~~~~ 382 (668)
+++.++|+++.+++.+|+.|+||||+||+|.+|..++++|+ +....++||||+||+|||+|||.+++. +.++++.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 99999999999999999999999999999999999999995 566889999999999999999999983 4689999
Q ss_pred eeccceeEEEEeCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcce
Q psy3918 383 DVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQ 462 (668)
Q Consensus 383 d~~~~slgi~~~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~ 462 (668)
|+.|+++||++.++.|.++|+||+++|++++++ |+| +.|+|..
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~----------------------------ftt---------~~dnQp~ 441 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQT----------------------------FTT---------YSDNQPG 441 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeee----------------------------eee---------ecCCCCc
Confidence 999999999999999999999999999999998 999 9999999
Q ss_pred EEEEEeecCccccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccC-CCCCHHHHHH
Q psy3918 463 VEIKVHQGEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSS-GGLSKDEIEN 541 (668)
Q Consensus 463 ~~i~i~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~-~~ls~~ei~~ 541 (668)
+.|.||+||+.++++|.+||.|.|.||||+|+|+|+|+++|.+|.||+|.|+|.++.||+...++|.+. +.|++++|++
T Consensus 442 V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ier 521 (620)
T KOG0101|consen 442 VLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIER 521 (620)
T ss_pred eeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998877 6799999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy3918 542 MVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTL 621 (668)
Q Consensus 542 ~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L 621 (668)
|...++.+..+|...+++.+++|.||+|+|+++..+++-.+.++++++.++.+.++++..||+.+..+..++|++|.++|
T Consensus 522 m~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el 601 (620)
T KOG0101|consen 522 MVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKEL 601 (620)
T ss_pred hhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999987669999999999999999999999998777899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3918 622 QQASLKLFEMAYKK 635 (668)
Q Consensus 622 ~~~~~~i~~r~~~~ 635 (668)
+..|.|++.+.|..
T Consensus 602 ~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 602 ELVCNPIISKLYQG 615 (620)
T ss_pred HhhccHHHHhhhcc
Confidence 99999999998874
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1e-89 Score=785.26 Aligned_cols=537 Identities=57% Similarity=0.862 Sum_probs=501.6
Q ss_pred ceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
+.+|||||||||||||++.+|.|++|+|..|.+.+||+|+|.++++++||..|+.++..+|.++++++||+||+.+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 369999999999999999999999999999999999999998777899999999999999999999999999999865
Q ss_pred HHHhhccCceEEEEcCCCCeeEeC-CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQG-SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
++...+.+||.++...++.+.+.. ..+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 159 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGK 159 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 556678899999988878776653 4567899999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-------------------------------------------CCeEEEEeccCCCcccccccCc----------
Q psy3918 216 IAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI---------- 242 (668)
Q Consensus 216 ~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~---------- 242 (668)
+|||+ ++.|+|+++.||..|||++||.
T Consensus 160 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~ 239 (621)
T CHL00094 160 IAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239 (621)
T ss_pred HcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHH
Confidence 99998 4567788999999999998773
Q ss_pred --------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 --------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKAL 314 (668)
Q Consensus 243 --------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L 314 (668)
..+++++.+|+.+||++|+.||.+.++.+.++++..+..++.++...|||++|++++.|+++++..+|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (621)
T CHL00094 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENAL 319 (621)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235678899999999999999999999999998765443456788999999999999999999999999999
Q ss_pred HHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEe
Q psy3918 315 QDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETL 394 (668)
Q Consensus 315 ~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~ 394 (668)
+++++.+.+|+.|+||||+||||.|+++|+++||.++..++||++|||+|||++|+++++..+++.+.|++|++||+++.
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~ 399 (621)
T CHL00094 320 KDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETL 399 (621)
T ss_pred HHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeecc
Confidence 99999999999999999999999999999999999888999999999999999999999988899999999999999999
Q ss_pred CCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccc
Q psy3918 395 GGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREM 474 (668)
Q Consensus 395 ~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~ 474 (668)
++.+.++||||+++|++++.. |++ ..++|+.+.|.||||++..
T Consensus 400 ~~~~~~ii~~~t~iP~~~~~~----------------------------~~~---------~~~~q~~v~i~i~~ge~~~ 442 (621)
T CHL00094 400 GGVMTKIIPRNTTIPTKKSEV----------------------------FST---------AVDNQTNVEIHVLQGEREL 442 (621)
T ss_pred CCEEEEEEeCCCccceeeeEE----------------------------EEe---------ccCCCcEEEEEEEeecccc
Confidence 999999999999999999888 988 8899999999999999999
Q ss_pred cccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhH
Q psy3918 475 AADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDK 554 (668)
Q Consensus 475 ~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~ 554 (668)
+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..++++..+.+....+|++++++++++++.++..+|+
T Consensus 443 ~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~ 522 (621)
T CHL00094 443 AKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDK 522 (621)
T ss_pred CCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcch
Confidence 99999999999999999999999999999999999999999999999999998887778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 555 VKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634 (668)
Q Consensus 555 ~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~ 634 (668)
..+++.+++|.||+|||.+|++|+++..++++++++++++.++++++||+.+ +.+++++++++|++.+.++..+.|.
T Consensus 523 ~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 523 EKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988889999999999999999999999976 5689999999999999999988877
Q ss_pred H
Q psy3918 635 K 635 (668)
Q Consensus 635 ~ 635 (668)
.
T Consensus 600 ~ 600 (621)
T CHL00094 600 S 600 (621)
T ss_pred h
Confidence 4
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.6e-89 Score=783.44 Aligned_cols=532 Identities=63% Similarity=0.948 Sum_probs=497.9
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChHH
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEI 137 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~v 137 (668)
.||||||||||||||++.+|.+++++|..|++.+||+|+|..++++++|..|+.++.++|.++++++||+||+++. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999877789999999999999999999999999999983 47
Q ss_pred HHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHc
Q psy3918 138 KKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIA 217 (668)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~A 217 (668)
+...+.+||. +...++...+. ..++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||++|
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~-v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 156 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVK-VDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 156 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEE-ECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 7778899999 55667777776 457889999999999999999999999999999999999999999999999999999
Q ss_pred CCC--------------------------------------------CCeEEEEeccCCCcccccccCc-----------
Q psy3918 218 GLN--------------------------------------------KGVFEVKSTNGDTLLGGEGLDI----------- 242 (668)
Q Consensus 218 Gl~--------------------------------------------~g~~~V~~~~gd~~lGG~~iD~----------- 242 (668)
||+ ++.|+|+++.||..|||++||.
T Consensus 157 Gl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~ 236 (595)
T TIGR02350 157 GLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFK 236 (595)
T ss_pred CCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHH
Confidence 998 4567788999999999998874
Q ss_pred -------cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 -------RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQ 315 (668)
Q Consensus 243 -------~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~ 315 (668)
..+++++.+|+.+||++|+.||.+.++.++++++..+..|+.++.++|||++|+++|+|+++++.++|+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~ 316 (595)
T TIGR02350 237 KEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALK 316 (595)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999987665445567899999999999999999999999999999
Q ss_pred HcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEeC
Q psy3918 316 DADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLG 395 (668)
Q Consensus 316 ~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~~ 395 (668)
++++++.+|+.|+||||+||||+|++.|+++||.++..++||++|||+|||++|+++++.++++.+.|++|++||+++.+
T Consensus 317 ~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~ 396 (595)
T TIGR02350 317 DAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLG 396 (595)
T ss_pred HcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecC
Confidence 99999999999999999999999999999999988889999999999999999999999889999999999999999999
Q ss_pred CEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCcccc
Q psy3918 396 GVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMA 475 (668)
Q Consensus 396 ~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~~ 475 (668)
+.+.++|++|+++|++++.. |++ ..++|+.+.|.||||++..+
T Consensus 397 ~~~~~ii~~~~~iP~~~~~~----------------------------~~~---------~~d~q~~v~i~i~~ge~~~~ 439 (595)
T TIGR02350 397 GVMTKLIERNTTIPTKKSQV----------------------------FST---------AADNQPAVDIHVLQGERPMA 439 (595)
T ss_pred CceEEEEeCCCcCCccceEe----------------------------eec---------cCCCCcEEEEEEEeeccccc
Confidence 99999999999999999887 888 89999999999999999999
Q ss_pred ccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhHH
Q psy3918 476 ADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKV 555 (668)
Q Consensus 476 ~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~ 555 (668)
.+|..||++.+.++|+.+.|.++|+|+|++|.||+|+|++.+..++++..+++....+|++++++++++.+.++..+|+.
T Consensus 440 ~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~ 519 (595)
T TIGR02350 440 ADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKK 519 (595)
T ss_pred ccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchh
Confidence 99999999999999999999989999999999999999999999999999999877889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 556 KRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAY 633 (668)
Q Consensus 556 ~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~ 633 (668)
.+++.+++|.||+|||.+|+.|+++..++++++++++++.++++++||+.+ +.+++++++++|++.+.++..+.|
T Consensus 520 ~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 520 RKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987889999999999999999999999976 678999999999999999887654
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1e-88 Score=772.33 Aligned_cols=526 Identities=41% Similarity=0.621 Sum_probs=490.5
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChHHH
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIK 138 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~v~ 138 (668)
+|||||||||||||++.+|.+++|+|..|++.+||+|+|..+++++||..|+.++.++|.++++++|||||+.+.|...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999998777899999999999999999999999999999877532
Q ss_pred HhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcC
Q psy3918 139 KDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAG 218 (668)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AG 218 (668)
.+.+||.++...++.+.+... +..++|+++++++|++|++.|+.++|.++.++||||||||++.||++|++||++||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 156 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV-QGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAG 156 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC-CCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 577899999888888877743 34899999999999999999999999999999999999999999999999999999
Q ss_pred CC-------------------------------------------CCeEEEEeccCCCcccccccCc-------------
Q psy3918 219 LN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI------------- 242 (668)
Q Consensus 219 l~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~------------- 242 (668)
|+ ++.|+|+++.||.+|||++||.
T Consensus 157 l~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~ 236 (599)
T TIGR01991 157 LNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGIS 236 (599)
T ss_pred CCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCC
Confidence 98 4567788999999999998773
Q ss_pred -cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy3918 243 -RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKN 321 (668)
Q Consensus 243 -~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~ 321 (668)
..++..+.+|+.+||++|+.||.+.++.+.++. .+ .++.++|||++|+++|+|+++++.++|+++|+++++++
T Consensus 237 ~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~ 310 (599)
T TIGR01991 237 ADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSV 310 (599)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 346778889999999999999999998888865 22 57899999999999999999999999999999999999
Q ss_pred CCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCC--CCceEEeeeccceeEEEEeCCEEE
Q psy3918 322 SDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGD--VTDVLLLDVTPLSLGIETLGGVFT 399 (668)
Q Consensus 322 ~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~--~~~~~~~d~~~~slgi~~~~~~~~ 399 (668)
.+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+.+++. .+++++.|++|++||+++.++.+.
T Consensus 311 ~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g~~~ 390 (599)
T TIGR01991 311 EEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVE 390 (599)
T ss_pred hhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCCEEE
Confidence 999999999999999999999999999988889999999999999999999875 357999999999999999999999
Q ss_pred EEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccccccCc
Q psy3918 400 RLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAADNK 479 (668)
Q Consensus 400 ~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~~~~n~ 479 (668)
++||||++||++++.. |++ ..++|+.+.|.||||++..+.+|.
T Consensus 391 ~ii~rnt~iP~~~~~~----------------------------~~t---------~~d~q~~v~i~i~qGe~~~~~~n~ 433 (599)
T TIGR01991 391 KIIPRNTPIPVARAQE----------------------------FTT---------YKDGQTAMVIHVVQGERELVEDCR 433 (599)
T ss_pred EEEeCCCcCCccceEE----------------------------EEE---------ccCCCeEEEEEEEeecccccccCc
Confidence 9999999999999888 998 899999999999999999999999
Q ss_pred eeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Q psy3918 480 LLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDR 559 (668)
Q Consensus 480 ~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~ 559 (668)
.||+|.|.++|+.|.|.++|+|+|++|.||+|+|++.+..+|++..+.+....+|++++++++++.+.++..+|+..++.
T Consensus 434 ~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~ 513 (599)
T TIGR01991 434 SLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARAL 513 (599)
T ss_pred eEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999988778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 560 VEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634 (668)
Q Consensus 560 ~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~ 634 (668)
.+++|++|+|+|.++..++++...+++++++++...++++++||+++ +.++++++.++|++.+.++..+.++
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 514 AEQKVEAERILEALQAALAADGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888999999999999999999999876 6789999999999999888875554
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=6.9e-88 Score=767.01 Aligned_cols=525 Identities=40% Similarity=0.637 Sum_probs=488.0
Q ss_pred CceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCCh
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDP 135 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 135 (668)
...+|||||||||||||++.+|.+++|+|..|++.+||+|+|.++ .++||..|+.++.++|.++++++|||||+.+.|
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 95 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD- 95 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh-
Confidence 447999999999999999999999999999999999999999855 599999999999999999999999999999876
Q ss_pred HHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 136 EIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 136 ~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
++...+.+||.+....+|.+.+.. ....++|+++++++|++|++.|+.++|.++.++||||||||++.||++|++||+
T Consensus 96 -~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 96 -IQQRYPHLPYQFVASENGMPLIRT-AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred -hhhhhhcCCeEEEecCCCceEEEe-cCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 345567899999988788888774 345899999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-------------------------------------------CCeEEEEeccCCCcccccccCc----------
Q psy3918 216 IAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDI---------- 242 (668)
Q Consensus 216 ~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~---------- 242 (668)
+|||+ ++.|+|+++.||.+|||++||.
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~ 253 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQA 253 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHc
Confidence 99998 4567789999999999998873
Q ss_pred ----cccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3918 243 ----RKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDAD 318 (668)
Q Consensus 243 ----~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~ 318 (668)
..++.++.+|+.+||++|+.||.+.++.+.++.+ ...|||++|+++|+|+++++..+|+++|++++
T Consensus 254 ~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~ 323 (616)
T PRK05183 254 GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALRDAG 323 (616)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2456788899999999999999999888888532 12499999999999999999999999999999
Q ss_pred CCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCC--CCceEEeeeccceeEEEEeCC
Q psy3918 319 CKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGD--VTDVLLLDVTPLSLGIETLGG 396 (668)
Q Consensus 319 ~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~--~~~~~~~d~~~~slgi~~~~~ 396 (668)
+.+.+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+.+++. .+++.+.|++|++|||++.+|
T Consensus 324 ~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 403 (616)
T PRK05183 324 VEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGG 403 (616)
T ss_pred CCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccceecCC
Confidence 999999999999999999999999999999888889999999999999999999885 468999999999999999999
Q ss_pred EEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccccc
Q psy3918 397 VFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAA 476 (668)
Q Consensus 397 ~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~~~ 476 (668)
.+.++||||++||++++.. |++ ..++|+.+.|.||||++..+.
T Consensus 404 ~~~~ii~r~t~iP~~~~~~----------------------------~~t---------~~d~q~~v~i~v~qGe~~~~~ 446 (616)
T PRK05183 404 LVEKIIPRNTTIPVARAQE----------------------------FTT---------FKDGQTAMAIHVVQGERELVA 446 (616)
T ss_pred eEEEEEeCCCcccccccEE----------------------------EEe---------ccCCCeEEEEEEecccccccc
Confidence 9999999999999999888 998 899999999999999999999
Q ss_pred cCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhHHH
Q psy3918 477 DNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVK 556 (668)
Q Consensus 477 ~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~ 556 (668)
+|..||+|.|.|+|+.|.|.++|+|+|++|.||+|+|++.+..+|++..+++....+|++++++++++.+.++..+|+..
T Consensus 447 ~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~ 526 (616)
T PRK05183 447 DCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQA 526 (616)
T ss_pred cccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 557 RDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634 (668)
Q Consensus 557 ~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~ 634 (668)
+++.+++|++|.|+|.+++.++++...+++++++++.+.++++++||+.+ +.+++++++++|++.+.+++.+.|+
T Consensus 527 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 527 RALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987778899999999999999999999865 7889999999999999999986665
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.8e-84 Score=732.75 Aligned_cols=510 Identities=32% Similarity=0.499 Sum_probs=451.1
Q ss_pred ceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCCh-
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDP- 135 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~- 135 (668)
..+|||||||||||||++.++.+++|+|..|++++||+|+|.+ +.++||..| +++++||+||+.+++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~-~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTS-NNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcC-CCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 4689999999999999999999999999999999999999974 469999987 7999999999998762
Q ss_pred ---HHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHH
Q psy3918 136 ---EIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKD 212 (668)
Q Consensus 136 ---~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~ 212 (668)
.+....+. .....++...+. ..++.++|+++++++|++|++.|+.++|.++.++||||||||++.||++|++
T Consensus 88 ~~~~~~~~~k~----~~~~~~~~~~~~-~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~ 162 (595)
T PRK01433 88 NTPALFSLVKD----YLDVNSSELKLN-FANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVML 162 (595)
T ss_pred cchhhHhhhhh----eeecCCCeeEEE-ECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 22222111 122222333444 4567899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC-------------------------------------------CCeEEEEeccCCCcccccccCccccHHHH
Q psy3918 213 AGQIAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLDIRKDQMAM 249 (668)
Q Consensus 213 Aa~~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD~~~~~~~~ 249 (668)
||++|||+ +|.|+|++++||.+|||++||........
T Consensus 163 Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~ 242 (595)
T PRK01433 163 AAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLC 242 (595)
T ss_pred HHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHH
Confidence 99999998 45677899999999999999854322222
Q ss_pred H--------HHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy3918 250 Q--------RLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKN 321 (668)
Q Consensus 250 ~--------rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~ 321 (668)
. +.++.||++|+.||.+.... ...++|||++|+++|+|+++++..+|+++|++++ .
T Consensus 243 ~~~~~~~~~~~~~~~ekaK~~LS~~~~~~--------------~~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~ 306 (595)
T PRK01433 243 NKFDLPNSIDTLQLAKKAKETLTYKDSFN--------------NDNISINKQTLEQLILPLVERTINIAQECLEQAG--N 306 (595)
T ss_pred HhcCCCCCHHHHHHHHHHHHhcCCCcccc--------------cceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--c
Confidence 1 23456999999999876421 1268999999999999999999999999999998 5
Q ss_pred CCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEEEeCCEEEEE
Q psy3918 322 SDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRL 401 (668)
Q Consensus 322 ~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~~~~~~~~~i 401 (668)
.+|+.|+||||+||||+|+++|+++||.++..++|||+|||+|||++|+.+++...++++.|++|++|||++.+|.|.++
T Consensus 307 ~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~~~g~~~~i 386 (595)
T PRK01433 307 PNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKI 386 (595)
T ss_pred ccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEecCCEEEEE
Confidence 78999999999999999999999999998888999999999999999999998878899999999999999999999999
Q ss_pred eeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCccccccCcee
Q psy3918 402 ITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAADNKLL 481 (668)
Q Consensus 402 i~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~~~~n~~l 481 (668)
|+||++||++++.. |+| ..++|+.+.|.|||||+..+.+|..|
T Consensus 387 i~rnt~iP~~~~~~----------------------------f~t---------~~d~q~~v~i~v~qGe~~~~~~n~~l 429 (595)
T PRK01433 387 IMRNTPIPISVVKE----------------------------FTT---------YADNQTGIQFHILQGEREMAADCRSL 429 (595)
T ss_pred EECCCcccceeeEE----------------------------eEe---------ecCCCeEEEEEEEeccccccCCCcEE
Confidence 99999999998888 999 89999999999999999999999999
Q ss_pred eeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3918 482 GQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVE 561 (668)
Q Consensus 482 g~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~e 561 (668)
|+|.|.|+|+.|+|.++|+|+|++|.||+|+|++.+..||++.++.|..+.+|+++|+++|+++++++..+|...++..+
T Consensus 430 g~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~ 509 (595)
T PRK01433 430 ARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQE 509 (595)
T ss_pred EEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy3918 562 ALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLK----LFEMAYKKMA 637 (668)
Q Consensus 562 a~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~----i~~r~~~~~~ 637 (668)
++|++|.+++.+++.++++...+++++++++.+.+++.++||+.+ +...+++++++|++...+ .+..+.+|+.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 586 (595)
T PRK01433 510 AVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKKSMDTKLNIIINDLL 586 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 999999999999999988888899999999999999999999865 567788888887777766 2444555554
Q ss_pred h
Q psy3918 638 A 638 (668)
Q Consensus 638 ~ 638 (668)
+
T Consensus 587 ~ 587 (595)
T PRK01433 587 K 587 (595)
T ss_pred c
Confidence 4
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-81 Score=705.89 Aligned_cols=512 Identities=58% Similarity=0.853 Sum_probs=482.3
Q ss_pred CceEEEEEcCCceEEEEEEeCC-eeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCC
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGK-QAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDD 134 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d 134 (668)
.+.+|||||||||||||+++++ .+.++.|..|.|.+||+|+|.+++++++|..|++++..+|.++++.+||++|+.-.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 4578999999999999999988 79999999999999999999977789999999999999999999999999998611
Q ss_pred hHHHHhhccCceEEEEcCCCC-eeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHH
Q psy3918 135 PEIKKDMKNLSYKIVRASNGD-AWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDA 213 (668)
Q Consensus 135 ~~v~~~~~~~p~~~~~~~~~~-~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~A 213 (668)
+. ..+. ..++.++|+++++++|.+||+.|+.+++..++++||||||||++.||++|++|
T Consensus 83 -------------------~~~~~~~-~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -------------------GLKISVE-VDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -------------------CCcceee-eCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 11 1222 45588999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-------------------------------------------CCeEEEEeccCCCcccccccC---------
Q psy3918 214 GQIAGLN-------------------------------------------KGVFEVKSTNGDTLLGGEGLD--------- 241 (668)
Q Consensus 214 a~~AGl~-------------------------------------------~g~~~V~~~~gd~~lGG~~iD--------- 241 (668)
|++|||+ +|.|+|++++||++|||++||
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 9999998 567889999999999999776
Q ss_pred ---------ccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHH
Q psy3918 242 ---------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQK 312 (668)
Q Consensus 242 ---------~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~ 312 (668)
+..++++++||+.+||++|+.||+..++.++++++..+ .++..+|||++||+++.+++.++..++++
T Consensus 223 ~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~ 298 (579)
T COG0443 223 EFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQ 298 (579)
T ss_pred HhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999887655 57889999999999999999999999999
Q ss_pred HHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceEEeeeccceeEEE
Q psy3918 313 ALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIE 392 (668)
Q Consensus 313 ~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~~~d~~~~slgi~ 392 (668)
+|.++++++.+|+.|+||||+||||.|++.++++||+++..++|||++||.|||++|+.+++...+++++|++|+++|++
T Consensus 299 al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie 378 (579)
T COG0443 299 ALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIE 378 (579)
T ss_pred HHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred EeCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEeecCc
Q psy3918 393 TLGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGER 472 (668)
Q Consensus 393 ~~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~ 472 (668)
+.++.+.++|++|+++|.++... |++ ..|+|+.+.+++++|++
T Consensus 379 ~~~~~~~~ii~rn~~iP~~~~~~----------------------------f~t---------~~d~q~~~~i~v~qge~ 421 (579)
T COG0443 379 TLGGVRTPIIERNTTIPVKKSQE----------------------------FST---------AADGQTAVAIHVFQGER 421 (579)
T ss_pred cCcchhhhHHhcCCCCCcccceE----------------------------EEe---------ecCCCceeEEEEEecch
Confidence 99999999999999999999887 999 99999999999999999
Q ss_pred cccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q psy3918 473 EMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATE 552 (668)
Q Consensus 473 ~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~ 552 (668)
.++.+|..+|.|.+.++||.|+|.++|+|+|.+|.||+++|++.++.+|++..+.|..+.+|++++++.|++.++.+.+.
T Consensus 422 ~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~ 501 (579)
T COG0443 422 EMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAAL 501 (579)
T ss_pred hhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988779999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 553 DKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMA 632 (668)
Q Consensus 553 D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~ 632 (668)
|+..++..+.+|.++.+++.++..|.+.. .++++++.++...+.++++||++ + .++++.+.++|+....++..+.
T Consensus 502 d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~ 576 (579)
T COG0443 502 DKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKK 576 (579)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876 99999999999999999999998 2 8899999999999999999888
Q ss_pred HH
Q psy3918 633 YK 634 (668)
Q Consensus 633 ~~ 634 (668)
|+
T Consensus 577 ~~ 578 (579)
T COG0443 577 YQ 578 (579)
T ss_pred hc
Confidence 75
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.4e-80 Score=715.00 Aligned_cols=532 Identities=45% Similarity=0.723 Sum_probs=479.5
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChHHH
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIK 138 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~v~ 138 (668)
|||||||||||+||++.++.+++|.|..|+|++||+|+|.++ +++||..|...+.++|.++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999854 8999999999999999999999999999999999999
Q ss_pred HhhccCceEEEEcCCCCeeEeC-CCC--ceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 139 KDMKNLSYKIVRASNGDAWVQG-SDE--KVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~i~~-~~~--~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
.+.+.+||.++...+|...+.. ..+ ..++|+++++++|++|++.|+.+++..+.++||||||+|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 9999999999998888777653 223 5899999999999999999999999999999999999999999999999999
Q ss_pred HcCCC--------------------------------------------CCeEEEEeccCCCcccccccCc---------
Q psy3918 216 IAGLN--------------------------------------------KGVFEVKSTNGDTLLGGEGLDI--------- 242 (668)
Q Consensus 216 ~AGl~--------------------------------------------~g~~~V~~~~gd~~lGG~~iD~--------- 242 (668)
+|||+ .|.++|+++.|+..+||++||.
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99998 5567788899999999997763
Q ss_pred ---------cccHHHHHHHHHHHHHHHHHhCC--CcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHH
Q psy3918 243 ---------RKDQMAMQRLKEAAEKAKIELSS--SVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQ 311 (668)
Q Consensus 243 ---------~~~~~~~~rL~~~aE~~K~~LS~--~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~ 311 (668)
..+++.+.+|+.+||++|+.||. +....+.++.+..+. .++.+.|||++|++++.|+++++..+|+
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~---~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDG---EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTT---EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccceecccccccccccccccc
Confidence 45678889999999999999999 566666777665521 6899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC--CCCceEEeeecccee
Q psy3918 312 KALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG--DVTDVLLLDVTPLSL 389 (668)
Q Consensus 312 ~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~--~~~~~~~~d~~~~sl 389 (668)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999988889999999999999999999988 567899999999999
Q ss_pred EEEEeCCEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEEEee
Q psy3918 390 GIETLGGVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQ 469 (668)
Q Consensus 390 gi~~~~~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~i~~ 469 (668)
||++.++.+.+++++|+++|...+.. |.+ ..++|+.+.|.||+
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~----------------------------~~t---------~~~~~~~i~i~i~~ 439 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKS----------------------------FKT---------VTDNQTSISIDIYE 439 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEE----------------------------EEE---------SSTTCSEEEEEEEE
T ss_pred cccccccccccccccccccccccccc----------------------------cch---------hccccccccceeee
Confidence 99999999999999999999988866 888 88999999999999
Q ss_pred cCccccccCceeeeEEEeCCCCCCCCCCceEEEEEeCCCceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHH
Q psy3918 470 GEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQY 549 (668)
Q Consensus 470 ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~ 549 (668)
|++....+|..||++.|.++++.+.|.++|+|+|++|.||+|+|++.+..++.+..+.+.....+++++++++.++++++
T Consensus 440 g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 519 (602)
T PF00012_consen 440 GESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEM 519 (602)
T ss_dssp SSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999988888777669999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Q psy3918 550 ATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANK-DSVDPEELRKATTTLQQASLKL 628 (668)
Q Consensus 550 ~~~D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~-~~~~~~~~~~~~~~L~~~~~~i 628 (668)
..+|+.+++..+++|++|+++|.+|+.+++..+.++++++ .+.+++..+||++. +.++.++|++++++|++...++
T Consensus 520 ~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i 596 (602)
T PF00012_consen 520 DEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPI 596 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876778887776 78899999999874 5678999999999999999999
Q ss_pred HHHHHH
Q psy3918 629 FEMAYK 634 (668)
Q Consensus 629 ~~r~~~ 634 (668)
..|+|+
T Consensus 597 ~~r~~~ 602 (602)
T PF00012_consen 597 KKRYMQ 602 (602)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999873
No 18
>KOG0103|consensus
Probab=100.00 E-value=1.5e-75 Score=628.17 Aligned_cols=522 Identities=31% Similarity=0.516 Sum_probs=467.3
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChHH
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEI 137 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~v 137 (668)
.++|||||..||.+|+++.+..++|.|+.++|.||++|+|. ...|++|.+|+.+..+|+.|++..+||++||.|.||.+
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg-~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFG-PKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeec-cccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 38999999999999999999999999999999999999997 55899999999999999999999999999999999999
Q ss_pred HHhhccCceEEEEcCCCCeeEeC---CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHH
Q psy3918 138 KKDMKNLSYKIVRASNGDAWVQG---SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAG 214 (668)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~i~~---~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa 214 (668)
|.+.+++||.++...+|.+.+.. +..+.|+|++|+||+|.+|+.+|++.+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999887664 567889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC--------------------------------------------------CCeEEEEeccCCCcccccccC---
Q psy3918 215 QIAGLN--------------------------------------------------KGVFEVKSTNGDTLLGGEGLD--- 241 (668)
Q Consensus 215 ~~AGl~--------------------------------------------------~g~~~V~~~~gd~~lGG~~iD--- 241 (668)
++|||+ .|.+.++++.+|..+||++||
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999998 677789999999999999766
Q ss_pred ---------------ccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHH
Q psy3918 242 ---------------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKT 306 (668)
Q Consensus 242 ---------------~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i 306 (668)
+..++++..||+.+||++|+.||++.....+|++++.| .|.+..|+|+|||+||.|+++|+
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999877 68899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC--CCCceEEeee
Q psy3918 307 VNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG--DVTDVLLLDV 384 (668)
Q Consensus 307 ~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~--~~~~~~~~d~ 384 (668)
..++.++|++++++.+||+.|.+|||+||||.|.++|.++||+++.+++|.|||||+|||+++|++|+ +++++.+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 6788999999
Q ss_pred ccceeEEEEeC-----CEEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCC
Q psy3918 385 TPLSLGIETLG-----GVFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS 459 (668)
Q Consensus 385 ~~~slgi~~~~-----~~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~ 459 (668)
.||++.+.|.. +....+||+|.++|..+..+ |.+
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT----------------------------~~R------------- 435 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLT----------------------------FNR------------- 435 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEE----------------------------EEe-------------
Confidence 99999998752 44578999999999888776 544
Q ss_pred cceEEEEEeecC-ccccccCceeeeEEEeCCCCCCCC-CCceEEEEEeCCCceEEEEeee------cC------------
Q psy3918 460 QTQVEIKVHQGE-REMAADNKLLGQFTLVGIPPAPRG-VPQIEVTFDIDANGIVHVSARD------KG------------ 519 (668)
Q Consensus 460 q~~~~i~i~~ge-~~~~~~n~~lg~~~l~~i~~~~~g-~~~i~v~f~id~~Gil~v~a~~------~~------------ 519 (668)
...+.+.++++. .........|+++++.++.+...| ..++.|...++.+|+++|...- ..
T Consensus 436 k~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~ 515 (727)
T KOG0103|consen 436 KGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDA 515 (727)
T ss_pred cCceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcc
Confidence 234556666654 334445578999999999887774 4579999999999999985220 00
Q ss_pred ----------CCc-ee---E--EEEccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc
Q psy3918 520 ----------TGK-EQ---Q--IVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKME-EFKA 582 (668)
Q Consensus 520 ----------t~~-~~---~--~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~-~~~~ 582 (668)
.++ +. . +.....++|+.++++..++++.+|..+|+...++.+++|.||+|||++|++|. .|.+
T Consensus 516 ~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~ 595 (727)
T KOG0103|consen 516 AKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYED 595 (727)
T ss_pred hhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhh
Confidence 010 00 1 11223367999999999999999999999999999999999999999999997 5999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHH
Q psy3918 583 QLPAEECAKLKEQIAELQKLIAN-KDSVDPEELRKATTTLQQAS 625 (668)
Q Consensus 583 ~~~~~e~~~i~~~l~~~~~wl~~-~~~~~~~~~~~~~~~L~~~~ 625 (668)
+++++++++++..|+++++|||. +++.++..|..|+.+|+...
T Consensus 596 f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g 639 (727)
T KOG0103|consen 596 FITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLG 639 (727)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhh
Confidence 99999999999999999999987 47789999999999998876
No 19
>KOG0104|consensus
Probab=100.00 E-value=9.6e-67 Score=560.34 Aligned_cols=533 Identities=29% Similarity=0.417 Sum_probs=449.8
Q ss_pred CCceEEEEEcCCceEEEEEEeCCee-eEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCC
Q psy3918 55 VKGQVIGIDLGTTNSCVAVMEGKQA-KVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFD 133 (668)
Q Consensus 55 ~~~~vvGIDlGTt~s~vA~~~~~~~-~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 133 (668)
...+|++|||||.++.||++..|-| +|+.|..++|++|++|+|. +++|++|.+|..++.++|.+++.+++.|||+..+
T Consensus 20 ~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~ 98 (902)
T KOG0104|consen 20 SALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLD 98 (902)
T ss_pred chhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccC
Confidence 3457999999999999999987765 9999999999999999996 8899999999999999999999999999999999
Q ss_pred ChHHHHhhccCce-EEEEcC-CCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHH
Q psy3918 134 DPEIKKDMKNLSY-KIVRAS-NGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATK 211 (668)
Q Consensus 134 d~~v~~~~~~~p~-~~~~~~-~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~ 211 (668)
+|.++.+.+.+|| .++.++ .+.+.+...+...|++++++||+|.+.+..|+.+...+|+++|||||.||+++||+++.
T Consensus 99 ~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 99 DPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred CcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 9999988888774 555553 45566664556899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-------------------------------------------------------C---CeEEEEeccCCC
Q psy3918 212 DAGQIAGLN-------------------------------------------------------K---GVFEVKSTNGDT 233 (668)
Q Consensus 212 ~Aa~~AGl~-------------------------------------------------------~---g~~~V~~~~gd~ 233 (668)
+||++||++ + .+++|++.++|.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999998 1 467889999999
Q ss_pred ccccc--------------------ccCccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHH
Q psy3918 234 LLGGE--------------------GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRS 293 (668)
Q Consensus 234 ~lGG~--------------------~iD~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~ 293 (668)
.|||. ..|+..++++|.||.++|+++|..||.|..+.++|+.+.+| .||+.+|||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe 334 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTRE 334 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----cccccceeHH
Confidence 99998 23677899999999999999999999999999999999988 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCC-CCCCCCCchhHHHhhHHHhhhhh
Q psy3918 294 KFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGK-VPSRAVNPDEAVAIGAAVQGGVL 372 (668)
Q Consensus 294 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~-~~~~~~npdeaVA~GAai~aa~l 372 (668)
+||++|.++..|+..+|+++|..++++.++|+.|+|+||+||+|.||+.|.++.|. ++.+.+|+|||++.||+++||.|
T Consensus 335 ~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~L 414 (902)
T KOG0104|consen 335 EFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHL 414 (902)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999986 57899999999999999999999
Q ss_pred cC--CCCceEEeeeccceeEEEEeCC--------EEEEEeeCCCCCCccceecccccCCccceeeeeccccccccccccc
Q psy3918 373 AG--DVTDVLLLDVTPLSLGIETLGG--------VFTRLITRNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGG 442 (668)
Q Consensus 373 s~--~~~~~~~~d~~~~slgi~~~~~--------~~~~ii~r~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 442 (668)
|. +++++.+.|.++|+|-++..+. ....+|+++.++|.++..+
T Consensus 415 SksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~--------------------------- 467 (902)
T KOG0104|consen 415 SKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVIT--------------------------- 467 (902)
T ss_pred cccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceee---------------------------
Confidence 98 4679999999999998876432 1234789999999887444
Q ss_pred eeEEeeecCcccCCCCCcceEEEEEeecCccccccCceeeeEEEeCCCCCC----C---CCCceEEEEEeCCCceEEEEe
Q psy3918 443 VFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAADNKLLGQFTLVGIPPAP----R---GVPQIEVTFDIDANGIVHVSA 515 (668)
Q Consensus 443 ~f~~~~~~n~~~p~~~~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~i~~~~----~---g~~~i~v~f~id~~Gil~v~a 515 (668)
|+. ++|+ +.+.+-.|.-. ..+-.+++.|+...- . ....|.++|.+|..|++.|+.
T Consensus 468 -~~~---------ysdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~ 529 (902)
T KOG0104|consen 468 -FTS---------YSDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSR 529 (902)
T ss_pred -ccc---------cCCc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEee
Confidence 222 2211 22222111100 123466777665322 1 123499999999999998863
Q ss_pred eec------------------C--------------------------CCc--e--------------------------
Q psy3918 516 RDK------------------G--------------------------TGK--E-------------------------- 523 (668)
Q Consensus 516 ~~~------------------~--------------------------t~~--~-------------------------- 523 (668)
.+. + .++ +
T Consensus 530 ~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~ 609 (902)
T KOG0104|consen 530 VEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPT 609 (902)
T ss_pred eeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcc
Confidence 210 0 000 0
Q ss_pred ----------eEEEEccC----CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccCCHH
Q psy3918 524 ----------QQIVIQSS----GGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKME--EFKAQLPAE 587 (668)
Q Consensus 524 ----------~~~~i~~~----~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~--~~~~~~~~~ 587 (668)
..+.|+.. ..|++..++....+++.+...|+.+.++++|.|+||+|+|.++.+|+ +|.++.+++
T Consensus 610 ~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~E 689 (902)
T KOG0104|consen 610 EKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEE 689 (902)
T ss_pred hhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHH
Confidence 01233322 35899999999999999999999999999999999999999999996 599999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 588 ECAKLKEQIAELQKLIANK-DSVDPEELRKATTTLQQASLKLFEMAYKKMA 637 (668)
Q Consensus 588 e~~~i~~~l~~~~~wl~~~-~~~~~~~~~~~~~~L~~~~~~i~~r~~~~~~ 637 (668)
|+..|++.+..+.+||+++ .....+++.+++.+|++.+..++.|..+...
T Consensus 690 Ek~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq 740 (902)
T KOG0104|consen 690 EKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQ 740 (902)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 9999999999999999875 5567899999999999999999988776554
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=8.9e-45 Score=396.73 Aligned_cols=277 Identities=25% Similarity=0.369 Sum_probs=239.7
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEe----------------------------------------
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFT---------------------------------------- 98 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~---------------------------------------- 98 (668)
++|||||||||+||++.++++++|++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred cCCcEEEcHHHHHhhhhCCCch--hhHhhhhhCCCCCChHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHH
Q psy3918 99 KDGERLVGTPARRQAVTNSANT--FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVL 176 (668)
Q Consensus 99 ~~~~~~vG~~A~~~~~~~p~~~--i~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL 176 (668)
.++..+||..|+.++..+|.++ ++.+||+||...- ..+....++++++++|
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~---------------------------~~~~~~~~e~l~a~iL 134 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGL---------------------------KPQQVALFEDLVCAMM 134 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCC---------------------------CccceeCHHHHHHHHH
Confidence 2457889999999999999998 6799999997521 1112234899999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEeeCCCCC-----HHHHHH---HHHHHHHcCCC----------------------------
Q psy3918 177 MKMKETSEAFLNTSVKNAVITVPAYFN-----DSQRQA---TKDAGQIAGLN---------------------------- 220 (668)
Q Consensus 177 ~~lk~~ae~~l~~~~~~~VITVPa~f~-----~~qR~a---~~~Aa~~AGl~---------------------------- 220 (668)
++||+.|+.++|.++.++|||||+||+ +.||++ +++||++|||+
T Consensus 135 ~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~ 214 (450)
T PRK11678 135 LHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVV 214 (450)
T ss_pred HHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEE
Confidence 999999999999999999999999999 888876 69999999998
Q ss_pred ---CCe-------------------EEEEeccCCCcccccccCcccc---------------------------------
Q psy3918 221 ---KGV-------------------FEVKSTNGDTLLGGEGLDIRKD--------------------------------- 245 (668)
Q Consensus 221 ---~g~-------------------~~V~~~~gd~~lGG~~iD~~~~--------------------------------- 245 (668)
+|+ ++|+++.| ..|||++||....
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 333 35666677 4799999985321
Q ss_pred -------------------------HHHH------------HHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEE
Q psy3918 246 -------------------------QMAM------------QRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNL 288 (668)
Q Consensus 246 -------------------------~~~~------------~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~ 288 (668)
+..+ .+|+.+||++|+.||.+.++.+.++++. .++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcce
Confidence 1111 2678899999999999999999998764 34779
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHh
Q psy3918 289 KLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQ 368 (668)
Q Consensus 289 ~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~ 368 (668)
+|||++|+++++|+++++.++|+++|+++++. ++.|+||||+|+||.|++.|++.||..+....+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999976 489999999999999999999999988888899999999999999
Q ss_pred hhhh
Q psy3918 369 GGVL 372 (668)
Q Consensus 369 aa~l 372 (668)
|..+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 9753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=1.5e-28 Score=262.30 Aligned_cols=267 Identities=20% Similarity=0.260 Sum_probs=195.9
Q ss_pred EEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCC-c-EEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChHH
Q psy3918 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDG-E-RLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEI 137 (668)
Q Consensus 60 vGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~-~-~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~v 137 (668)
+||||||+||+|+.. ++..++. .||+|+|..++ . ..+|..|+.++.+.|.+.... +++
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~pi----- 65 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------RPL----- 65 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------ccC-----
Confidence 899999999999876 4445554 69999998542 3 479999988776666554321 111
Q ss_pred HHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHc
Q psy3918 138 KKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIA 217 (668)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~A 217 (668)
....+...++...+|+++.+.+..........+|||||++|++.||+++++|++.|
T Consensus 66 ------------------------~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~a 121 (336)
T PRK13928 66 ------------------------RDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQA 121 (336)
T ss_pred ------------------------CCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 11123344667777888776554332233447999999999999999999999999
Q ss_pred CCC-------------------------------CCeEEEE-------eccCCCcccccccCccccHHHHHHH-----HH
Q psy3918 218 GLN-------------------------------KGVFEVK-------STNGDTLLGGEGLDIRKDQMAMQRL-----KE 254 (668)
Q Consensus 218 Gl~-------------------------------~g~~~V~-------~~~gd~~lGG~~iD~~~~~~~~~rL-----~~ 254 (668)
|++ +|++++. ...++..+||+++|.........+. ..
T Consensus 122 g~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i~~~l~~~~~~~~~~~ 201 (336)
T PRK13928 122 GAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKLLIGER 201 (336)
T ss_pred CCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHHHHHHHHHhchhcCHH
Confidence 998 3444331 1345677999999865433332222 35
Q ss_pred HHHHHHHHhCCCc----ceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCc-eE
Q psy3918 255 AAEKAKIELSSSV----QTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDAD--CKNSDIG-EV 327 (668)
Q Consensus 255 ~aE~~K~~LS~~~----~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~I~-~V 327 (668)
.||++|+.++... ...+.+.. .+...+....++|||++|++++.++++++.+.|+++|+.++ +..+.++ .|
T Consensus 202 ~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~I 279 (336)
T PRK13928 202 TAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGI 279 (336)
T ss_pred HHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCE
Confidence 7999999987541 12233221 11111135678999999999999999999999999999986 4456677 79
Q ss_pred EEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhh
Q psy3918 328 LLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVL 372 (668)
Q Consensus 328 iLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~l 372 (668)
+|+||+|++|.|+++|++.|+.++....||++|||+|||+++..+
T Consensus 280 vL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 280 IMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred EEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999999999999999988888899999999999998765
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.96 E-value=3.2e-28 Score=259.21 Aligned_cols=265 Identities=22% Similarity=0.286 Sum_probs=198.7
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCc--EEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGE--RLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
.|||||||+|++| +.+++.. +.| .||+|+|+.++. ..||..|+.+..++|.++... + ++.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~--- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMK--- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCC---
Confidence 5999999999985 5555544 443 499999985443 689999999998888876542 1 111
Q ss_pred HHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCC--cEEEeeCCCCCHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVK--NAVITVPAYFNDSQRQATKDAG 214 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~--~~VITVPa~f~~~qR~a~~~Aa 214 (668)
.| .+.--++++.+|++++..++..++..+. .+|||||++|++.||+++.+|+
T Consensus 68 -------------------------~G-~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~ 121 (335)
T PRK13929 68 -------------------------DG-VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV 121 (335)
T ss_pred -------------------------CC-ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 11 1223378899999999999888876554 7999999999999999999999
Q ss_pred HHcCCC-------------------------------CCeEEEE-------eccCCCcccccccCccccHHHHHHH----
Q psy3918 215 QIAGLN-------------------------------KGVFEVK-------STNGDTLLGGEGLDIRKDQMAMQRL---- 252 (668)
Q Consensus 215 ~~AGl~-------------------------------~g~~~V~-------~~~gd~~lGG~~iD~~~~~~~~~rL---- 252 (668)
+.||++ +|++++. ...++..+||+++|...........
T Consensus 122 ~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l~~~l~~~~~~~~ 201 (335)
T PRK13929 122 KNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNLLI 201 (335)
T ss_pred HHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 999998 2333321 1335667999998854333222111
Q ss_pred -HHHHHHHHHHhCCCc----ceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCc
Q psy3918 253 -KEAAEKAKIELSSSV----QTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCK--NSDIG 325 (668)
Q Consensus 253 -~~~aE~~K~~LS~~~----~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~ 325 (668)
...||++|+.++... ...+.+... +...+....+.|++++|++++.+++.++.+.|.++|+++... .+.++
T Consensus 202 ~~~~AE~iK~~l~~~~~~~~~~~~~v~g~--~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~ 279 (335)
T PRK13929 202 GERTAEQVKMEIGYALIEHEPETMEVRGR--DLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVD 279 (335)
T ss_pred CHHHHHHHHHHHcCCCCCCCCceEEEeCC--ccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcC
Confidence 358999999998632 122222211 111113467899999999999999999999999999998643 35677
Q ss_pred -eEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhh
Q psy3918 326 -EVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 326 -~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~a 369 (668)
+|+|+||+|++|.+.++|++.|+.++....||+++||+||+..-
T Consensus 280 ~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 280 RGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999988888999999999998763
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.95 E-value=1e-25 Score=240.36 Aligned_cols=266 Identities=22% Similarity=0.253 Sum_probs=184.7
Q ss_pred EEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecC----Cc--EEEcHHHHHhhhhCCCchhhHhhhhhCCCCC
Q psy3918 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKD----GE--RLVGTPARRQAVTNSANTFYATKRLIGRRFD 133 (668)
Q Consensus 60 vGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~----~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 133 (668)
|||||||+||+|++...+ .++ ..||+|+|.++ .. ..||..|+.++.+.|.+.- +++-|.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC----
Confidence 999999999998875333 344 37999999844 22 7799999887666665542 122221
Q ss_pred ChHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHH
Q psy3918 134 DPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDA 213 (668)
Q Consensus 134 d~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~A 213 (668)
+|..... +....+++++........+.....+|||||++|+..||+++++|
T Consensus 70 ----------------------------~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~ 120 (333)
T TIGR00904 70 ----------------------------DGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKES 120 (333)
T ss_pred ----------------------------CCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 1111111 33444555555443322222223899999999999999999999
Q ss_pred HHHcCCC-------------------------------CCeEEEEe-------ccCCCcccccccCccccHHHHHHH---
Q psy3918 214 GQIAGLN-------------------------------KGVFEVKS-------TNGDTLLGGEGLDIRKDQMAMQRL--- 252 (668)
Q Consensus 214 a~~AGl~-------------------------------~g~~~V~~-------~~gd~~lGG~~iD~~~~~~~~~rL--- 252 (668)
++.||++ +|++++.- ..++..+||+++|.........+.
T Consensus 121 ~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l~~~l~~~~~~~ 200 (333)
T TIGR00904 121 ALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYNLL 200 (333)
T ss_pred HHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHHHHHHHHHhccc
Confidence 9999998 33333321 234566999999865433322222
Q ss_pred --HHHHHHHHHHhCCCcc-----eeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC
Q psy3918 253 --KEAAEKAKIELSSSVQ-----TDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKN-SDI 324 (668)
Q Consensus 253 --~~~aE~~K~~LS~~~~-----~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~I 324 (668)
+..||++|+.++.... ..+.+.. .+...+....+.|++++|.+++.+.++++.+.+.+.|+.++... .++
T Consensus 201 ~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l 278 (333)
T TIGR00904 201 IGEQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADI 278 (333)
T ss_pred CCHHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhh
Confidence 4589999999976322 1222211 11001123457899999999999999999999999999887542 233
Q ss_pred -c-eEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhh
Q psy3918 325 -G-EVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 325 -~-~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ 371 (668)
+ .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 279 ~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 279 VERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred ccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 3 7999999999999999999999998888899999999999999754
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=1.7e-25 Score=238.86 Aligned_cols=265 Identities=22% Similarity=0.270 Sum_probs=185.0
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecC-Cc-EEEcHHHHHhhhhCCCchhhHhhhhhCCCCCCh
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKD-GE-RLVGTPARRQAVTNSANTFYATKRLIGRRFDDP 135 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~-~~-~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~ 135 (668)
..|||||||++++++.. +...++ .+||+|+|.++ +. .++|..|+.+..++|.++... +-|
T Consensus 6 ~~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~pi------- 67 (334)
T PRK13927 6 NDLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RPM------- 67 (334)
T ss_pred ceeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ecC-------
Confidence 35999999999998443 222233 27999999755 33 589999998877766654211 111
Q ss_pred HHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHH
Q psy3918 136 EIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQ 215 (668)
Q Consensus 136 ~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~ 215 (668)
..|..... +....+++++........ ..-..+|||||++|++.||+++++|++
T Consensus 68 -------------------------~~G~i~d~-~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~ 120 (334)
T PRK13927 68 -------------------------KDGVIADF-DVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESAL 120 (334)
T ss_pred -------------------------CCCeecCH-HHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 01111111 334445555554433322 122489999999999999999999999
Q ss_pred HcCCC-------------------------------CCeEEEEe-------ccCCCcccccccCccccHHHHHHH-----
Q psy3918 216 IAGLN-------------------------------KGVFEVKS-------TNGDTLLGGEGLDIRKDQMAMQRL----- 252 (668)
Q Consensus 216 ~AGl~-------------------------------~g~~~V~~-------~~gd~~lGG~~iD~~~~~~~~~rL----- 252 (668)
.||++ +|++++.- ..++..+||+++|.........+.
T Consensus 121 ~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~ 200 (334)
T PRK13927 121 GAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYNLLIG 200 (334)
T ss_pred HcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHHHHHHHHHHHHHhCcCcC
Confidence 99987 33333321 234567999999864433222221
Q ss_pred HHHHHHHHHHhCCCcc----eeeec--ccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCC
Q psy3918 253 KEAAEKAKIELSSSVQ----TDINL--PYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCK--NSDI 324 (668)
Q Consensus 253 ~~~aE~~K~~LS~~~~----~~i~i--~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I 324 (668)
...||++|+.++.... ..+.+ +.+.. +.+..+.|+|++|++++.++++++.+.|.++|++++.. ...+
T Consensus 201 ~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~ 276 (334)
T PRK13927 201 ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVT----GLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIV 276 (334)
T ss_pred HHHHHHHHHHhhccCCCCCCceEEEeCcccCC----CCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhh
Confidence 3569999999985432 22322 11111 13457899999999999999999999999999988643 2334
Q ss_pred c-eEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhh
Q psy3918 325 G-EVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 325 ~-~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ 371 (668)
+ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..
T Consensus 277 ~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 277 DRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred cCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 4 5999999999999999999999988888899999999999999865
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.93 E-value=1e-24 Score=232.99 Aligned_cols=268 Identities=22% Similarity=0.249 Sum_probs=189.3
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecC-C-cEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKD-G-ERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~-~-~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
.+||||||++++++++..+ .++ .+||+|+|..+ + ..+||.+|+....+.|.+.- +++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee----------
Confidence 3999999999999887332 233 26999999742 2 36899999887665554421 111
Q ss_pred HHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQI 216 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~ 216 (668)
|+ .+|. +...+....+++++.+.+..........+|||||++|+..+|+++.+|++.
T Consensus 69 --------pi--------------~~G~-i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~ 125 (335)
T PRK13930 69 --------PL--------------KDGV-IADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEH 125 (335)
T ss_pred --------cC--------------CCCe-EcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 11 1111 112345677778877665554444567899999999999999999999999
Q ss_pred cCCC-------------------------------CCeEEEE-------eccCCCcccccccCccccHHHHHHH-----H
Q psy3918 217 AGLN-------------------------------KGVFEVK-------STNGDTLLGGEGLDIRKDQMAMQRL-----K 253 (668)
Q Consensus 217 AGl~-------------------------------~g~~~V~-------~~~gd~~lGG~~iD~~~~~~~~~rL-----~ 253 (668)
+|++ +|++++. ...+...+||.++|.........+. .
T Consensus 126 ~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 205 (335)
T PRK13930 126 AGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKYNLLIGE 205 (335)
T ss_pred cCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHHHHHHHHHHHHhCCCCCH
Confidence 9988 2233321 1234556899998854433322221 3
Q ss_pred HHHHHHHHHhCCCcce----eeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCc-e
Q psy3918 254 EAAEKAKIELSSSVQT----DINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCK--NSDIG-E 326 (668)
Q Consensus 254 ~~aE~~K~~LS~~~~~----~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~-~ 326 (668)
..||++|+.++..... .+.+... +...+....+.|++++|++++.+.++++.+.|.++|+.+... .+.++ +
T Consensus 206 ~~ae~~K~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 283 (335)
T PRK13930 206 RTAEEIKIEIGSAYPLDEEESMEVRGR--DLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRG 283 (335)
T ss_pred HHHHHHHHHhhcCcCCCCCceEEEECc--cCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCC
Confidence 6799999999864321 2222211 111113457899999999999999999999999999987533 23345 4
Q ss_pred EEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhh
Q psy3918 327 VLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVL 372 (668)
Q Consensus 327 ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~l 372 (668)
|+|+||+|++|.++++|++.|+.++....+|+++||+|||+.+...
T Consensus 284 IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 284 IVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred EEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999888888899999999999998643
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.85 E-value=1.9e-20 Score=189.51 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC--------------------------CC
Q psy3918 169 SQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------------------KG 222 (668)
Q Consensus 169 ~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~--------------------------~g 222 (668)
-+..+++|+++++.++.++|.++.++|||||++|++.||+++.+|++.|||+ ++
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGgg 118 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGG 118 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCCCcEEEEeCCC
Confidence 4788899999999999999999999999999999999999999999999998 22
Q ss_pred eEEEEe-------ccCCCcccccccCccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHH
Q psy3918 223 VFEVKS-------TNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKF 295 (668)
Q Consensus 223 ~~~V~~-------~~gd~~lGG~~iD~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~ef 295 (668)
++++.- ...+..+||+++|..... .+.--..+||++|+.++. .+++
T Consensus 119 tt~i~i~~~G~i~~~~~~~~GG~~it~~Ia~-~~~i~~~~AE~~K~~~~~--------------------------~~~~ 171 (239)
T TIGR02529 119 TTGISILKKGKVIYSADEPTGGTHMSLVLAG-AYGISFEEAEEYKRGHKD--------------------------EEEI 171 (239)
T ss_pred cEEEEEEECCeEEEEEeeecchHHHHHHHHH-HhCCCHHHHHHHHHhcCC--------------------------HHHH
Confidence 332211 123445888887743211 111124789999987541 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHH
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAV 367 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai 367 (668)
.+++.++++++...+++.|++. .++.|+|+||++++|.+++.+++.|+.++..+.||+++||+|||+
T Consensus 172 ~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 172 FPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 7899999999999999999864 357999999999999999999999999888899999999999986
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.81 E-value=4e-19 Score=185.73 Aligned_cols=265 Identities=25% Similarity=0.282 Sum_probs=171.6
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCC--cEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChH
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDG--ERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~--~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~ 136 (668)
-|||||||+|+.|+.-..| .++ ..||+|+|+.+. -..+|.+|+.+..+.|.+..
T Consensus 3 ~igIDLGT~~t~i~~~~~G--iv~-------~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~--------------- 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG--IVL-------NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE--------------- 58 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE--EEE-------EEES-EEEETTT--EEEESHHHHTTTTS-GTTEE---------------
T ss_pred ceEEecCcccEEEEECCCC--EEE-------ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccE---------------
Confidence 4899999999988433322 222 249999998543 35689999876655554321
Q ss_pred HHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHH
Q psy3918 137 IKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQI 216 (668)
Q Consensus 137 v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~ 216 (668)
+ +.+.....+.=-++...+|+++.+.+.......-..++|+||+..++-+|+++.+|+..
T Consensus 59 -----------~---------~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~ 118 (326)
T PF06723_consen 59 -----------V---------VRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ 118 (326)
T ss_dssp -----------E---------E-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH
T ss_pred -----------E---------EccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 0 00111112222366777788877766553233456899999999999999999999999
Q ss_pred cCCC----------------------CCeEEEEeccCC-----------------CcccccccCccccHHHHHHH-----
Q psy3918 217 AGLN----------------------KGVFEVKSTNGD-----------------TLLGGEGLDIRKDQMAMQRL----- 252 (668)
Q Consensus 217 AGl~----------------------~g~~~V~~~~gd-----------------~~lGG~~iD~~~~~~~~~rL----- 252 (668)
||.. .|.+. .+.+++ ...||+.+|...-....++-
T Consensus 119 aGa~~V~li~ep~AaAiGaGl~i~~~~g~mi-VDIG~GtTdiavislggiv~s~si~~gG~~~DeaI~~~ir~~y~l~Ig 197 (326)
T PF06723_consen 119 AGARKVYLIEEPIAAAIGAGLDIFEPRGSMI-VDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEAIIRYIREKYNLLIG 197 (326)
T ss_dssp TT-SEEEEEEHHHHHHHHTT--TTSSS-EEE-EEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--
T ss_pred cCCCEEEEecchHHHHhcCCCCCCCCCceEE-EEECCCeEEEEEEECCCEEEEEEEEecCcchhHHHHHHHHHhhCcccC
Confidence 9977 22232 122222 23677777754333333321
Q ss_pred HHHHHHHHHHhCCCcc----eeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC--c
Q psy3918 253 KEAAEKAKIELSSSVQ----TDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKN-SDI--G 325 (668)
Q Consensus 253 ~~~aE~~K~~LS~~~~----~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~I--~ 325 (668)
...||++|+.+++... ..+.+. +.|...+....+.|+-+++.+.+.+.+.++.+.|+++|+...-.. .|| +
T Consensus 198 ~~tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~ 275 (326)
T PF06723_consen 198 ERTAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILEN 275 (326)
T ss_dssp HHHHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 3679999999986422 223332 223223356789999999999999999999999999999763221 133 5
Q ss_pred eEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhh
Q psy3918 326 EVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 326 ~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa 370 (668)
+|+|+||+++++.+.++|++.++.++...-||..+||.||.....
T Consensus 276 GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp -EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred CEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999987654
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.80 E-value=4.1e-18 Score=175.51 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=137.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC--------------------------CC
Q psy3918 169 SQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------------------KG 222 (668)
Q Consensus 169 ~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~--------------------------~g 222 (668)
-+.....|+++++.++.++|.++..++++||++|+..+|+++.+|++.|||+ +|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGgg 145 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGG 145 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCC
Confidence 3566778899999999999989999999999999999999999999999998 23
Q ss_pred eEEEE-------eccCCCcccccccCccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHH
Q psy3918 223 VFEVK-------STNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKF 295 (668)
Q Consensus 223 ~~~V~-------~~~gd~~lGG~~iD~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~ef 295 (668)
++++. -..++..+||++||..... .+..-+.+||++|+.++ +++++
T Consensus 146 tt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~-~l~i~~~eAE~lK~~~~--------------------------~~~~~ 198 (267)
T PRK15080 146 TTGISILKDGKVVYSADEPTGGTHMSLVLAG-AYGISFEEAEQYKRDPK--------------------------HHKEI 198 (267)
T ss_pred cEEEEEEECCeEEEEecccCchHHHHHHHHH-HhCCCHHHHHHHHhccC--------------------------CHHHH
Confidence 33321 1123556899888753221 11123578899988753 24678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhh
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~a 369 (668)
.++++|+++++.+.+++.|+.. .++.|+|+||+|++|.+++.+++.||.++....||+.++|+|||+++
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 8999999999999999999864 57899999999999999999999999988889999999999999875
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.74 E-value=2.4e-16 Score=158.95 Aligned_cols=270 Identities=23% Similarity=0.267 Sum_probs=189.2
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecC--C--cEEEcHHHHHhhhhCCCchhhHhhhhhCCCCC
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKD--G--ERLVGTPARRQAVTNSANTFYATKRLIGRRFD 133 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~--~--~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 133 (668)
.-|||||||.|+.|.+-..+ ++.| -||+|++..+ . -..+|.+|+.++.+.|.+...
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a----------- 66 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA----------- 66 (342)
T ss_pred ccceeeecccceEEEEcCce---EEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCceE-----------
Confidence 36999999999998766333 4443 4999999862 1 256899998765555554321
Q ss_pred ChHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhc-CCCCcEEEeeCCCCCHHHHHHHHH
Q psy3918 134 DPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLN-TSVKNAVITVPAYFNDSQRQATKD 212 (668)
Q Consensus 134 d~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~-~~~~~~VITVPa~f~~~qR~a~~~ 212 (668)
+...+...+.--++...+|+|+.+.+-...+ .....++|+||..-++-+|+|+++
T Consensus 67 ------------------------iRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 67 ------------------------IRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred ------------------------EeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHH
Confidence 1112223344446777788888877653322 445579999999999999999999
Q ss_pred HHHHcCCC-------------------------------CCeEEEE--ec-----cCCCcccccccCccccHHHHHHH--
Q psy3918 213 AGQIAGLN-------------------------------KGVFEVK--ST-----NGDTLLGGEGLDIRKDQMAMQRL-- 252 (668)
Q Consensus 213 Aa~~AGl~-------------------------------~g~~~V~--~~-----~gd~~lGG~~iD~~~~~~~~~rL-- 252 (668)
|++-||.. +|+.+|. +- .....+||+.+|...-.....++
T Consensus 123 a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~nl 202 (342)
T COG1077 123 AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYNL 202 (342)
T ss_pred HHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhCe
Confidence 99999987 3333321 11 11223788888865433333322
Q ss_pred ---HHHHHHHHHHhCCCcc------eeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCC
Q psy3918 253 ---KEAAEKAKIELSSSVQ------TDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDAD--CKN 321 (668)
Q Consensus 253 ---~~~aE~~K~~LS~~~~------~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~--~~~ 321 (668)
-+.||++|+....... -++.+. +.|.-.+....++++-+++.+.+++.++++.+.++..|+... +..
T Consensus 203 ~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~--Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~ 280 (342)
T COG1077 203 LIGERTAEKIKIEIGSAYPEEEDEELEMEVR--GRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAA 280 (342)
T ss_pred eecHHHHHHHHHHhcccccccCCccceeeEE--eeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcc
Confidence 2569999998765321 112221 112112245678999999999999999999999999999854 334
Q ss_pred CCCce-EEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhc
Q psy3918 322 SDIGE-VLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLA 373 (668)
Q Consensus 322 ~~I~~-ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls 373 (668)
+-++. ++|+||.+.+..+.+.|.+..+.+.....+|-.|||.|+......+.
T Consensus 281 DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 281 DIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred cHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 44555 99999999999999999999999988899999999999988776553
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.55 E-value=3.3e-13 Score=146.25 Aligned_cols=127 Identities=17% Similarity=0.352 Sum_probs=97.8
Q ss_pred cccccccCccccHHHHHHHHHHHHHHHHHhCCC------cceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHH
Q psy3918 234 LLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSS------VQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTV 307 (668)
Q Consensus 234 ~lGG~~iD~~~~~~~~~rL~~~aE~~K~~LS~~------~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~ 307 (668)
.+||++++.... ..+...+.+||++|+.++.. .+..+.++.+. .+....|||++|++++++.++++.
T Consensus 225 ~~GG~~it~~i~-~~l~~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~~ii~~~~~ei~ 297 (371)
T TIGR01174 225 PIGGNHITKDIA-KALRTPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELAEIIEARAEEIL 297 (371)
T ss_pred cchHHHHHHHHH-HHhCCCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHHHHHHHHHHHHH
Confidence 467777653211 22334578999999999863 24456666543 245689999999999999999999
Q ss_pred HHHH-HHHHHcCCCCCCCce-EEEecCccCcHHHHHHHHHHhCCCCC-----C-------CCCchhHHHhhHHHh
Q psy3918 308 NPCQ-KALQDADCKNSDIGE-VLLVGGMTRMPKVQSTVQEIFGKVPS-----R-------AVNPDEAVAIGAAVQ 368 (668)
Q Consensus 308 ~~i~-~~L~~a~~~~~~I~~-ViLVGGssriP~V~~~l~~~Fg~~~~-----~-------~~npdeaVA~GAai~ 368 (668)
+.++ +.|++++.. .+++. |+|+||+|++|.+++++++.|+.++. . .-+|..++|.|.++|
T Consensus 298 ~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 298 EIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 9997 999999876 66776 99999999999999999999986531 1 126888999998764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.46 E-value=7.3e-12 Score=137.64 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=91.3
Q ss_pred ccccccCccccHHHHHHHHHHHHHHHHHhCCC------cceeeecccccccCCCCcceEEEeeHHHHHHHHHHHHHHHHH
Q psy3918 235 LGGEGLDIRKDQMAMQRLKEAAEKAKIELSSS------VQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVN 308 (668)
Q Consensus 235 lGG~~iD~~~~~~~~~rL~~~aE~~K~~LS~~------~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~~i~~ 308 (668)
+||+.++.... ..+.-.+..||++|+.+... ....+.++.+.. .....++|.+|.+++.+.++++.+
T Consensus 234 ~GG~~it~dIa-~~l~i~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii~~r~~ei~~ 306 (420)
T PRK09472 234 YAGNVVTSDIA-YAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVIEPRYTELLN 306 (420)
T ss_pred chHHHHHHHHH-HHhCcCHHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHHHHHHHHHHH
Confidence 57765542111 11122357899999775432 234566654421 123589999999999996666666
Q ss_pred HHH-------HHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCC-------C-----CCCchhHHHhhHHHhh
Q psy3918 309 PCQ-------KALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPS-------R-----AVNPDEAVAIGAAVQG 369 (668)
Q Consensus 309 ~i~-------~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~-------~-----~~npdeaVA~GAai~a 369 (668)
.++ ..|..+++....+++|+|+||++++|.|++++++.|+.++. . ..+|..++|.|.++|+
T Consensus 307 ~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~ 386 (420)
T PRK09472 307 LVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYG 386 (420)
T ss_pred HHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHh
Confidence 665 45677788878899999999999999999999999975431 1 2479999999999997
Q ss_pred h
Q psy3918 370 G 370 (668)
Q Consensus 370 a 370 (668)
.
T Consensus 387 ~ 387 (420)
T PRK09472 387 K 387 (420)
T ss_pred h
Confidence 6
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.05 E-value=3.7e-08 Score=106.21 Aligned_cols=284 Identities=23% Similarity=0.345 Sum_probs=170.5
Q ss_pred eEEEEEcCCceEEEEEEe--CC-eeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCC
Q psy3918 58 QVIGIDLGTTNSCVAVME--GK-QAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDD 134 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~--~~-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d 134 (668)
.++|+|+||+..|+.+.. ++ ...++- -...||---. +| .++--.+..+..+ .++....+..|...++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig----~g~~~SrGik--~G-~I~di~~~~~sI~---~av~~AE~mag~~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIG----VGSHPSRGIK--KG-VIVDLDAAAQSIK---KAVEAAERMAGCEIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEe----eecccCcccc--cc-eEEcHHHHHHHHH---HHHHHHHHhcCCCcce
Confidence 799999999999988763 33 466653 2223331111 22 3333333333222 4455566666665442
Q ss_pred hHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCc---------------------
Q psy3918 135 PEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKN--------------------- 193 (668)
Q Consensus 135 ~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~--------------------- 193 (668)
..+ .++-......+....+.....+.++.+++-. +.+.|......+-..
T Consensus 77 v~v-----s~sG~~i~s~~~~g~v~i~~~~eIt~~DI~r-----vl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~ 146 (418)
T COG0849 77 VIV-----SLSGNHIKSQNVNGEVSISEEKEITQEDIER-----VLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPL 146 (418)
T ss_pred EEE-----EeccceeEEEeeEEEEEcCCCCccCHHHHHH-----HHHHHHhhccCCCceEEEEeeeEEEECCccccCCcc
Confidence 111 0111111111112223322337788888753 233332221111111
Q ss_pred -----------EEEeeCCCCCHHHHHHHHHHHHHcCCC-------------------------------CCeEEEEec--
Q psy3918 194 -----------AVITVPAYFNDSQRQATKDAGQIAGLN-------------------------------KGVFEVKST-- 229 (668)
Q Consensus 194 -----------~VITVPa~f~~~qR~a~~~Aa~~AGl~-------------------------------~g~~~V~~~-- 229 (668)
.++|+|..+-. -+.+|.+.+||. +|+.++.-.
T Consensus 147 gm~G~rL~v~vhvit~~~~~~~----Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~ 222 (418)
T COG0849 147 GMSGVRLEVEVHVITGPKNILE----NLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKN 222 (418)
T ss_pred ccccceEEEEEEEEEcchHHHH----HHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEEC
Confidence 36666665543 467788888988 333333211
Q ss_pred -----cCCCcccccccCccccHHHHHHHHHHHHHHHHHhCCCc------ceeeecccccccCCCCcceEEEeeHHHHHHH
Q psy3918 230 -----NGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSV------QTDINLPYLTMDAGGPKHMNLKLTRSKFESL 298 (668)
Q Consensus 230 -----~gd~~lGG~~iD~~~~~~~~~rL~~~aE~~K~~LS~~~------~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l 298 (668)
.+--.+||+.+-... .+.+.--+..||++|+...... ...++++....+ ...++||.++.++
T Consensus 223 G~l~~~~~ipvgG~~vT~DI-a~~l~t~~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~~~~t~~~ls~I 295 (418)
T COG0849 223 GALRYTGVIPVGGDHVTKDI-AKGLKTPFEEAERIKIKYGSALISLADDEETIEVPSVGSD------IPRQVTRSELSEI 295 (418)
T ss_pred CEEEEEeeEeeCccHHHHHH-HHHhCCCHHHHHHHHHHcCccccCcCCCcceEecccCCCc------ccchhhHHHHHHH
Confidence 122236776542110 1222233578999999986542 334666665432 3578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCC--------C----CCCchhHHHhhHH
Q psy3918 299 VGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPS--------R----AVNPDEAVAIGAA 366 (668)
Q Consensus 299 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~--------~----~~npdeaVA~GAa 366 (668)
+++.++++.++++..|++.++...-..+|+|+||++.+|.+.+..++.|+.+.. - ..+|..+.|.|..
T Consensus 296 I~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~ 375 (418)
T COG0849 296 IEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLL 375 (418)
T ss_pred HHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHH
Confidence 999999999999999999999877779999999999999999999999975421 1 3468899999999
Q ss_pred Hhhhhh
Q psy3918 367 VQGGVL 372 (668)
Q Consensus 367 i~aa~l 372 (668)
++++..
T Consensus 376 ~~~~~~ 381 (418)
T COG0849 376 LYGALM 381 (418)
T ss_pred HHHhhc
Confidence 998754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=98.98 E-value=2.7e-09 Score=115.85 Aligned_cols=265 Identities=16% Similarity=0.137 Sum_probs=148.6
Q ss_pred EEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecC---------CcEEEcHHHHHhhhhCCCchhhHhhhhhC
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKD---------GERLVGTPARRQAVTNSANTFYATKRLIG 129 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~KrllG 129 (668)
.|.||+||.++++++..+..|..+ +||+|+...+ ...++|..|...... +
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------~ 59 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------G 59 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------c
Confidence 378999999999998876655433 4777766432 356777776542110 0
Q ss_pred CCCCChHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHH
Q psy3918 130 RRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQA 209 (668)
Q Consensus 130 ~~~~d~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a 209 (668)
.. -.+|+ .+|. +.--+.+..+++++....-. ....-..++|++|..++..+|+.
T Consensus 60 ~~----------~~~P~--------------~~G~-i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~ 113 (371)
T cd00012 60 LE----------LIYPI--------------EHGI-VVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREK 113 (371)
T ss_pred eE----------Ecccc--------------cCCE-EeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHH
Confidence 00 11121 1111 12224455666666543211 11224579999999999888887
Q ss_pred HHH-HHHHcCCC--------------------------CCeEEEE---------eccCCCcccccccCccccHHHH----
Q psy3918 210 TKD-AGQIAGLN--------------------------KGVFEVK---------STNGDTLLGGEGLDIRKDQMAM---- 249 (668)
Q Consensus 210 ~~~-Aa~~AGl~--------------------------~g~~~V~---------~~~gd~~lGG~~iD~~~~~~~~---- 249 (668)
+.+ +.+..|++ .+...|. .......+||+.+|........
T Consensus 114 ~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~ 193 (371)
T cd00012 114 TTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGY 193 (371)
T ss_pred HHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCC
Confidence 766 45656665 1111111 1112345788877743222111
Q ss_pred ----HHHHHHHHHHHHHhCCCcc---ee-----eecccccccCCCCcceEEEeeHHHHHHHHHHHHH---------HHHH
Q psy3918 250 ----QRLKEAAEKAKIELSSSVQ---TD-----INLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIK---------KTVN 308 (668)
Q Consensus 250 ----~rL~~~aE~~K~~LS~~~~---~~-----i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~l~~---------~i~~ 308 (668)
..-...++.+|+.+..-.. .. ...........-++...+.++.+.| .+.+.+++ .+.+
T Consensus 194 ~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~ 272 (371)
T cd00012 194 ELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERF-RAPEILFNPSLIGSEQVGISE 272 (371)
T ss_pred CccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHh-hChHhcCChhhcCCCcCCHHH
Confidence 1123567888887653211 00 0000000000001223466665544 33333333 6778
Q ss_pred HHHHHHHHcCCC--CCCCceEEEecCccCcHHHHHHHHHHhCC----------CCCCCCCchhHHHhhHHHhhhh
Q psy3918 309 PCQKALQDADCK--NSDIGEVLLVGGMTRMPKVQSTVQEIFGK----------VPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 309 ~i~~~L~~a~~~--~~~I~~ViLVGGssriP~V~~~l~~~Fg~----------~~~~~~npdeaVA~GAai~aa~ 371 (668)
.|.++|.....+ ..-++.|+|+||+|++|.+.++|++.+.. ......+|..++-+||+++|..
T Consensus 273 ~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 273 AIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 888888765432 23468899999999999999999988852 1234567889999999999864
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=98.74 E-value=1.3e-07 Score=102.66 Aligned_cols=264 Identities=16% Similarity=0.155 Sum_probs=141.8
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCC--------cEEEcHHHHHhhhhCCCchhhHhhhhhC
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDG--------ERLVGTPARRQAVTNSANTFYATKRLIG 129 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~--------~~~vG~~A~~~~~~~p~~~i~~~KrllG 129 (668)
..|.||+||.++.+++..+..|.++ +||+|+...++ ..++|.+|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 3699999999999998876666655 58888886443 246677663210 000
Q ss_pred CCCCChHHHHhhccCceEEEEcCCCCeeEeCCCCceeChhhHHHHHHHHHHHHHHHhhcC--CCCcEEEeeCCCCCHHHH
Q psy3918 130 RRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKMKETSEAFLNT--SVKNAVITVPAYFNDSQR 207 (668)
Q Consensus 130 ~~~~d~~v~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~ev~a~iL~~lk~~ae~~l~~--~~~~~VITVPa~f~~~qR 207 (668)
. -.+|+. +| .+.-.+.+..+++++... .++. .-..++||+|...+..+|
T Consensus 61 -~----------~~~P~~--------------~G-~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r 111 (373)
T smart00268 61 -E----------LKYPIE--------------HG-IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNR 111 (373)
T ss_pred -e----------ecCCCc--------------CC-EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHH
Confidence 0 111211 11 222345566677776653 2322 234689999999999999
Q ss_pred HHHHHHH-HHcCCC----------------CCeEEEEecc-------------------CCCcccccccCccccHHHHH-
Q psy3918 208 QATKDAG-QIAGLN----------------KGVFEVKSTN-------------------GDTLLGGEGLDIRKDQMAMQ- 250 (668)
Q Consensus 208 ~a~~~Aa-~~AGl~----------------~g~~~V~~~~-------------------gd~~lGG~~iD~~~~~~~~~- 250 (668)
+.+.+.+ +..|.+ ...--|.+.+ .-..+||..+|.........
T Consensus 112 ~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (373)
T smart00268 112 EKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSER 191 (373)
T ss_pred HHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhc
Confidence 9887765 456665 0011111111 12247888776432211111
Q ss_pred -------HHHHHHHHHHHHhCCCc---ceeeec-------ccccccCCCCcceEEEeeHHHH---HHHHHHH-----HHH
Q psy3918 251 -------RLKEAAEKAKIELSSSV---QTDINL-------PYLTMDAGGPKHMNLKLTRSKF---ESLVGDL-----IKK 305 (668)
Q Consensus 251 -------rL~~~aE~~K~~LS~~~---~~~i~i-------~~l~~~~~~~~~~~~~iTr~ef---e~l~~~l-----~~~ 305 (668)
.-...++.+|+.+..-. ...+.. ........-+....+.+..+.| |-++.|- ...
T Consensus 192 ~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~ 271 (373)
T smart00268 192 GYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKG 271 (373)
T ss_pred CCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCC
Confidence 12345777777654311 000000 0000000000112334443333 1233321 235
Q ss_pred HHHHHHHHHHHcCCC--CCCCceEEEecCccCcHHHHHHHHHHhCC------C--CCCCCCchhHHHhhHHHhhhh
Q psy3918 306 TVNPCQKALQDADCK--NSDIGEVLLVGGMTRMPKVQSTVQEIFGK------V--PSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 306 i~~~i~~~L~~a~~~--~~~I~~ViLVGGssriP~V~~~l~~~Fg~------~--~~~~~npdeaVA~GAai~aa~ 371 (668)
+.+.|.++|.....+ ..-.+.|+|+||+|++|.+.++|.+.+.. + .....++..++=.||+++|..
T Consensus 272 i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 272 IHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 677777777765422 22347899999999999999999988721 1 122345566677788777753
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.31 E-value=2.8e-05 Score=85.72 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=45.1
Q ss_pred ceEEEeeHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCC--CCCCceEEEecCccCcHHHHHHHHHHhCC
Q psy3918 285 HMNLKLTRSKFE---SLVGDLI------KKTVNPCQKALQDADCK--NSDIGEVLLVGGMTRMPKVQSTVQEIFGK 349 (668)
Q Consensus 285 ~~~~~iTr~efe---~l~~~l~------~~i~~~i~~~L~~a~~~--~~~I~~ViLVGGssriP~V~~~l~~~Fg~ 349 (668)
...+.|+.+.|. -++.|-+ ..+.++|.++|.++..+ ..-.+.|+|+||+|.+|.+.++|++.+..
T Consensus 263 ~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 263 PYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred ccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 346778877774 3454522 14567777777765433 23357899999999999999999988743
No 36
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.20 E-value=1.6e-05 Score=86.93 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCCCC--CCceEEEecCccCcHHHHHHHHHHhCC------C--CCCCC-CchhHHHhhHHHhhhhh
Q psy3918 305 KTVNPCQKALQDADCKNS--DIGEVLLVGGMTRMPKVQSTVQEIFGK------V--PSRAV-NPDEAVAIGAAVQGGVL 372 (668)
Q Consensus 305 ~i~~~i~~~L~~a~~~~~--~I~~ViLVGGssriP~V~~~l~~~Fg~------~--~~~~~-npdeaVA~GAai~aa~l 372 (668)
.+.++|.+++.....+.. -.+.|+|+||+|++|.+.++|...+.. . +.... +|..++=.||+++|..-
T Consensus 290 gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 290 GLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp CHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 467788888877654321 257999999999999999999887732 1 12333 79999999999998744
No 37
>PTZ00452 actin; Provisional
Probab=98.15 E-value=3.1e-05 Score=84.04 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=54.4
Q ss_pred eEEEeeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCceEEEecCccCcHHHHHHHHHHhCC----C-
Q psy3918 286 MNLKLTRSKFE---SLVGDLI-----KKTVNPCQKALQDADCK--NSDIGEVLLVGGMTRMPKVQSTVQEIFGK----V- 350 (668)
Q Consensus 286 ~~~~iTr~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~I~~ViLVGGssriP~V~~~l~~~Fg~----~- 350 (668)
-.+.+..+.|. -+++|-+ ..+.+++.+++..+..+ ..-.+.|+|+||+|.+|.+.++|+.-+.. .
T Consensus 246 ~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~ 325 (375)
T PTZ00452 246 NILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQL 325 (375)
T ss_pred CEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCc
Confidence 35677777662 3344422 23556777777665432 23357999999999999999999987621 1
Q ss_pred ---CCCCCCchhHHHhhHHHhhh
Q psy3918 351 ---PSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 351 ---~~~~~npdeaVA~GAai~aa 370 (668)
+....++..++=+|++++|.
T Consensus 326 ~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 326 KIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred eeEEecCCCcceeEEECchhhcC
Confidence 12233455566678888775
No 38
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.09 E-value=0.0004 Score=74.45 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhh
Q psy3918 292 RSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 292 r~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ 371 (668)
++++.++++++++++...++..+.+ ..+++.|+|+||++++ +++.|++.|+.- ....||..|.|+|...+|..
T Consensus 264 ~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~ 336 (344)
T PRK13917 264 KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFANVRGYYKYGEL 336 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHHHHHHHHHHHH
Confidence 4567789999999999888888754 3478999999999987 889999999864 45678999999999999987
Q ss_pred hcCC
Q psy3918 372 LAGD 375 (668)
Q Consensus 372 ls~~ 375 (668)
+.+.
T Consensus 337 ~~~~ 340 (344)
T PRK13917 337 LKNK 340 (344)
T ss_pred Hhcc
Confidence 7653
No 39
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.05 E-value=5.3e-05 Score=71.97 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC-------------------CCeEEEE--------
Q psy3918 175 VLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN-------------------KGVFEVK-------- 227 (668)
Q Consensus 175 iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~-------------------~g~~~V~-------- 227 (668)
+.+++++++|+.+|..++++.-++|..--....+...+..+-|||. +++.++-
T Consensus 77 iVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi 156 (277)
T COG4820 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISI 156 (277)
T ss_pred HHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEE
Confidence 5688999999999998888888888877555555555555666665 2222220
Q ss_pred ------eccCCCcccccccCccccHHHHHHHHHHHHHHHHHhCCCcceeeecccccccCCCCcceEEEeeHHHHHHHHHH
Q psy3918 228 ------STNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGD 301 (668)
Q Consensus 228 ------~~~gd~~lGG~~iD~~~~~~~~~rL~~~aE~~K~~LS~~~~~~i~i~~l~~~~~~~~~~~~~iTr~efe~l~~~ 301 (668)
-+.-|..-||..+.+..... ..--.++||..|+.-... +|.-..+.|
T Consensus 157 ~kkGkViy~ADEpTGGtHmtLvlAG~-ygi~~EeAE~~Kr~~k~~--------------------------~Eif~~v~P 209 (277)
T COG4820 157 VKKGKVIYSADEPTGGTHMTLVLAGN-YGISLEEAEQYKRGHKKG--------------------------EEIFPVVKP 209 (277)
T ss_pred EEcCcEEEeccCCCCceeEEEEEecc-cCcCHhHHHHhhhccccc--------------------------hhcccchhH
Confidence 01123344555443211000 001134666666543211 122235679
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHh
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQ 368 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~ 368 (668)
+++++.+++.+-|+..+ |..+.|+||+|.-|.+.+..++.|+..+..+-.|....-+|-|+-
T Consensus 210 V~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 210 VYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred HHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhc
Confidence 99999999999988765 568999999999999999999999887777777776666665543
No 40
>PTZ00281 actin; Provisional
Probab=98.02 E-value=7e-05 Score=81.40 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=54.0
Q ss_pred EEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCceEEEecCccCcHHHHHHHHHHhCC----C--
Q psy3918 287 NLKLTRSKF---ESLVGDLI-----KKTVNPCQKALQDADCKN--SDIGEVLLVGGMTRMPKVQSTVQEIFGK----V-- 350 (668)
Q Consensus 287 ~~~iTr~ef---e~l~~~l~-----~~i~~~i~~~L~~a~~~~--~~I~~ViLVGGssriP~V~~~l~~~Fg~----~-- 350 (668)
.+.|..+.| |-++.|-+ ..+.++|.++|.....+. .-.+.|+|+||+|.+|.+.++|+.-+.. .
T Consensus 248 ~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~ 327 (376)
T PTZ00281 248 VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMK 327 (376)
T ss_pred EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcc
Confidence 456666555 33444422 135566777776654321 2247899999999999999999887731 1
Q ss_pred --CCCCCCchhHHHhhHHHhhh
Q psy3918 351 --PSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 351 --~~~~~npdeaVA~GAai~aa 370 (668)
+....++..++=+||+++|.
T Consensus 328 v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 328 IKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred eEEecCCCCceeEEECcccccC
Confidence 12334566777888888875
No 41
>PTZ00004 actin-2; Provisional
Probab=97.91 E-value=0.00014 Score=79.06 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=53.9
Q ss_pred EEEeeHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--CCCCceEEEecCccCcHHHHHHHHHHhCC----C-
Q psy3918 287 NLKLTRSKFE---SLVGDL------IKKTVNPCQKALQDADCK--NSDIGEVLLVGGMTRMPKVQSTVQEIFGK----V- 350 (668)
Q Consensus 287 ~~~iTr~efe---~l~~~l------~~~i~~~i~~~L~~a~~~--~~~I~~ViLVGGssriP~V~~~l~~~Fg~----~- 350 (668)
.+.|..+.|. -++.|- ...+.++|.+++.++..+ ..-...|+|+||+|.+|.+.++|+.-+.. .
T Consensus 249 ~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~ 328 (378)
T PTZ00004 249 IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM 328 (378)
T ss_pred EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc
Confidence 4566665553 355552 224556777777765432 22357899999999999999999987731 1
Q ss_pred ---CCCCCCchhHHHhhHHHhhh
Q psy3918 351 ---PSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 351 ---~~~~~npdeaVA~GAai~aa 370 (668)
+....++..++=+||+++|.
T Consensus 329 ~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 329 KIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred cEEEecCCCCceeEEECcccccC
Confidence 12234566666678777765
No 42
>PTZ00466 actin-like protein; Provisional
Probab=97.90 E-value=0.00015 Score=78.90 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=54.0
Q ss_pred eEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCceEEEecCccCcHHHHHHHHHHhCC----C-
Q psy3918 286 MNLKLTRSKF---ESLVGDLI-----KKTVNPCQKALQDADCK--NSDIGEVLLVGGMTRMPKVQSTVQEIFGK----V- 350 (668)
Q Consensus 286 ~~~~iTr~ef---e~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~I~~ViLVGGssriP~V~~~l~~~Fg~----~- 350 (668)
..+.|..+.| |-++.|-+ ..+.++|.+++.++..+ ..-...|+|+||+|.+|.+.++|+..+.. .
T Consensus 251 ~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~ 330 (380)
T PTZ00466 251 SQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDI 330 (380)
T ss_pred cEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCc
Confidence 3466776666 33444421 13556666666665433 22357999999999999999999987732 1
Q ss_pred ---CCCCCCchhHHHhhHHHhhh
Q psy3918 351 ---PSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 351 ---~~~~~npdeaVA~GAai~aa 370 (668)
+....++..++=+||+++|.
T Consensus 331 ~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 331 TIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred eEEEecCCCCceeEEECchhhcC
Confidence 12234555666678888775
No 43
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.85 E-value=0.00015 Score=77.69 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCC---------CCC---------
Q psy3918 296 ESLVGDLIKKTVNPCQKALQ--DADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPS---------RAV--------- 355 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~--~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~---------~~~--------- 355 (668)
.+.+.+.++++..-|++.++ ........|+.|+|+||++++|.+.+.|++.|+.++. ...
T Consensus 245 ~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~ 324 (340)
T PF11104_consen 245 QDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQE 324 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhh
Confidence 45566666666666666665 2223456799999999999999999999999975421 111
Q ss_pred -CchhHHHhhHHHhh
Q psy3918 356 -NPDEAVAIGAAVQG 369 (668)
Q Consensus 356 -npdeaVA~GAai~a 369 (668)
.|..+||.|.|+++
T Consensus 325 ~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 325 DAPQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcC
Confidence 25668999999875
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.96 E-value=0.018 Score=61.23 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=37.3
Q ss_pred CCCceEEEecCccCcHHHHHHHHHHhCCCC-CCCCCchhHHHhhHHHhh
Q psy3918 322 SDIGEVLLVGGMTRMPKVQSTVQEIFGKVP-SRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 322 ~~I~~ViLVGGssriP~V~~~l~~~Fg~~~-~~~~npdeaVA~GAai~a 369 (668)
.+++.|+|+||++. .+++.|++.|+... ....||..|.|+|-..+|
T Consensus 272 ~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 272 ESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred CcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 46899999999987 66889999998743 346789999999977665
No 45
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.65 E-value=0.0024 Score=62.61 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=42.1
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhh
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ 371 (668)
.++.|+++||.++.|.+.+++.+.||.++....+ .++.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4899999999999999999999999987754433 88999999999874
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.43 Score=49.65 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCCCCceEEEecCccCcHHHHHHHHHHhCCC
Q psy3918 298 LVGDLIKKTVNPCQKALQD--ADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 298 l~~~l~~~i~~~i~~~L~~--a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~ 350 (668)
+..++++.+.+-|.+.|+- +.-...+|+.|+|.||..++-.+.+.+.+.++.+
T Consensus 260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 4456667777777777662 2224467999999999999999999999998654
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.48 E-value=0.0074 Score=61.67 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-eEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHh
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIG-EVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQ 368 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~-~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~ 368 (668)
++++..+++.+...+.+.+...+ ++ .|+|.||.++.|.+.+.+.+.++.++..+.+|..+.|+|||++
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 56667777776666666665443 44 7999999999999999999999998888889999999999973
No 48
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.47 E-value=0.01 Score=61.41 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=42.3
Q ss_pred ceEEEecCccCcHHHHHHHHHHhCCCCC-CCCCchhHHHhhHHHhhhh
Q psy3918 325 GEVLLVGGMTRMPKVQSTVQEIFGKVPS-RAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 325 ~~ViLVGGssriP~V~~~l~~~Fg~~~~-~~~npdeaVA~GAai~aa~ 371 (668)
+.|+|.||.++.|.+.+.+++.++.++. .+.+|..+-|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 5689999999999999999999998876 5678999999999999864
No 49
>PRK15027 xylulokinase; Provisional
Probab=96.12 E-value=0.012 Score=66.18 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=45.9
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.|+++||.++++...+++.+.||.++....+.+++.|+|||+.|+.-.+
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999999866666777899999999987655
No 50
>PLN02669 xylulokinase
Probab=95.96 E-value=0.02 Score=65.47 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhh
Q psy3918 298 LVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 298 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ 371 (668)
++.-+++.+.-.++..++..+.. ..++.|+++||.++.|.+.+++.+.||.++.+.-. .++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCC-CCchHHHHHHHHHH
Confidence 45555555554444455444432 35789999999999999999999999997755444 47889999999975
No 51
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.92 E-value=0.02 Score=65.53 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=61.8
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhh
Q psy3918 291 TRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 291 Tr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa 370 (668)
+|..+..++.-+++-+.-.++.+++...-....++.|.++||.++++...+++.+.||.++....+ .|+.|+|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHHH
Confidence 466667777777777665555555533211234789999999999999999999999988865544 4588999999998
Q ss_pred hhcC
Q psy3918 371 VLAG 374 (668)
Q Consensus 371 ~ls~ 374 (668)
.-.+
T Consensus 490 ~~~G 493 (541)
T TIGR01315 490 KAAG 493 (541)
T ss_pred HhcC
Confidence 6544
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=95.67 E-value=0.029 Score=60.41 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=43.3
Q ss_pred ceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhh
Q psy3918 325 GEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 325 ~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa 370 (668)
+.|+++||.++.+.+.+.+++.++.++..+.+|..+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 4599999999999999999999999998899999999999999984
No 53
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.39 E-value=0.062 Score=54.81 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=37.9
Q ss_pred ceEEEecCccCcHHHHHHHHHHhCC-C----CCCCCCchhHHHhhHHHhh
Q psy3918 325 GEVLLVGGMTRMPKVQSTVQEIFGK-V----PSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 325 ~~ViLVGGssriP~V~~~l~~~Fg~-~----~~~~~npdeaVA~GAai~a 369 (668)
+.|+|.||.++.+.+.+.|++.++. + +..+.+|..+-|+|||++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3599999999999999999999953 2 3446688899999999975
No 54
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.29 E-value=0.044 Score=61.99 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDAD-CKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
..++.-+++.+.-.++..++... .....++.|.++||.+++|...+++.+.||.++... +..|+.|+|||+.|+.-.+
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcC
Confidence 33444455544444444333222 112247899999999999999999999999887543 4557889999999986554
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.27 E-value=0.057 Score=56.96 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhh
Q psy3918 295 FESLVGDLIKKTVNPCQK-ALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGV 371 (668)
Q Consensus 295 fe~l~~~l~~~i~~~i~~-~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ 371 (668)
.|+++.-+...+..-+-. +++...+. +-|+|+||.+....+.+.+++.+|.++..+.+|.-+-|+|||++|..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 456666666555443333 55444333 22999999999999999999999999999999999999999999863
No 56
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.26 E-value=0.039 Score=62.36 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDAD-CKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
..++.-+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.. .+..|+.|+|||+.|+.-.+
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHHHHHHhhcC
Confidence 33444444444444444443321 11224789999999999999999999999998865 44457889999999986554
No 57
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.20 E-value=0.059 Score=57.57 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=40.2
Q ss_pred ceEEEecCccCcHHHHHHHHHHhC-----CCCCCCCCchhHHHhhHHHhh
Q psy3918 325 GEVLLVGGMTRMPKVQSTVQEIFG-----KVPSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 325 ~~ViLVGGssriP~V~~~l~~~Fg-----~~~~~~~npdeaVA~GAai~a 369 (668)
+.|+|+||.++.+.+.+.|++.++ .++..+.+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 589999999999999999999994 456678899999999999985
No 58
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.19 E-value=0.053 Score=61.02 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=44.0
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.|.++||.++.+.+.+++.+.||.++... ...|+.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHHHHHHhcC
Confidence 47899999999999999999999999877544 4667899999999986654
No 59
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=95.14 E-value=0.23 Score=57.85 Aligned_cols=40 Identities=80% Similarity=1.204 Sum_probs=35.0
Q ss_pred cCCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 419 AGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 419 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
.+.+.++.+.|++|+++|+++.++.|..+|++|+++|...
T Consensus 403 ~~~~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~ 442 (657)
T PTZ00186 403 RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKK 442 (657)
T ss_pred ccccCceEEEeeccccccceecCCEEEEEEeCCCEeeEEE
Confidence 3445678899999999999999999999999999999643
No 60
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.10 E-value=0.045 Score=61.40 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDADC-KNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
..++.-+++.+.-.++..++...- ....++.|.++||.+++|...+++.+.||.++...-+ .|+.++|||+.|+.-.+
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHHHHHhcC
Confidence 445555555544444443332211 1124789999999999999999999999988855444 46889999999986554
No 61
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.09 E-value=0.057 Score=61.19 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 297 SLVGDLIKKTVNPCQKALQDADC-KNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 297 ~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.-+++.+.-.++..++...- ....++.|.++||.++++...+++.+.||.++...- ..|+.|+|||+.|+.-.+
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcC
Confidence 34444444444444444432211 012378999999999999999999999999876544 555889999999986555
No 62
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.01 E-value=0.056 Score=61.74 Aligned_cols=51 Identities=25% Similarity=0.451 Sum_probs=43.9
Q ss_pred CCceEEEecCc-cCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 323 DIGEVLLVGGM-TRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 323 ~I~~ViLVGGs-sriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.|+++||. ++.+.+.+++.+.||.++....+ .|+.|+|||+.|+.-.+
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 47899999999 99999999999999988765555 46889999999986654
No 63
>PRK04123 ribulokinase; Provisional
Probab=94.98 E-value=0.053 Score=62.15 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCc-cCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 297 SLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGM-TRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 297 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGs-sriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.-+++.+.-.++.+++...-....++.|.++||. ++.+...+++.+.||.++... .+.|+.|+|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEec-CccccchHHHHHHHHHHhc
Confidence 3455555554433333333221112247899999999 999999999999999887443 4567889999999986544
No 64
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=94.97 E-value=0.057 Score=58.01 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCC-------------------CC
Q psy3918 297 SLVGDLIKKTVNPCQKALQDA--DCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSR-------------------AV 355 (668)
Q Consensus 297 ~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~-------------------~~ 355 (668)
+++++.++++..-|++.|+-. ......++.|+|+||.+++|.+.+.+++.||.++.. ..
T Consensus 254 ~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~ 333 (348)
T TIGR01175 254 EVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVD 333 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhh
Confidence 356666677777777777532 223345899999999999999999999999754310 13
Q ss_pred CchhHHHhhHHHhh
Q psy3918 356 NPDEAVAIGAAVQG 369 (668)
Q Consensus 356 npdeaVA~GAai~a 369 (668)
+|..++|.|+|+++
T Consensus 334 ~~~~~~a~Glalr~ 347 (348)
T TIGR01175 334 APALMTALGLALRG 347 (348)
T ss_pred hHHHHHHhhHhhcC
Confidence 35667888888775
No 65
>PRK10331 L-fuculokinase; Provisional
Probab=94.79 E-value=0.063 Score=60.28 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 298 LVGDLIKKTVNPCQKALQDAD-CKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 298 l~~~l~~~i~~~i~~~L~~a~-~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
++.-+++.+.-.++..++... .....++.|.++||.++.|...+++.+.||.++...- ..|+.++|||+.|+.-.+
T Consensus 363 l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 363 FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHhcC
Confidence 444444444433333333221 1123478999999999999999999999999885444 456889999999986544
No 66
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.74 E-value=0.071 Score=59.59 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCC
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGD 375 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~ 375 (668)
.++.|.++||.++.++..+++.+.||.++... +.|+.|+|||+.|+.-.+.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999988543 3679999999999876553
No 67
>PLN02295 glycerol kinase
Probab=94.70 E-value=0.073 Score=60.44 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CC--CCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHh
Q psy3918 295 FESLVGDLIKKTVNPCQKALQDA----DC--KNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQ 368 (668)
Q Consensus 295 fe~l~~~l~~~i~~~i~~~L~~a----~~--~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~ 368 (668)
-..++.-+++.+.-.++.+++.. +. ....++.|.++||.+++|...+++.+.||.++.. .+..|+.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~-~~~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVR-PADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEe-cCccccHHHHHHHH
Confidence 33444455555444444444422 21 1234788999999999999999999999998854 34457889999999
Q ss_pred hhhhcC
Q psy3918 369 GGVLAG 374 (668)
Q Consensus 369 aa~ls~ 374 (668)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 986554
No 68
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.44 E-value=0.09 Score=59.63 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=43.6
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.|.++||.++.+...+++.+.||.++...-++ |+.|+|||+.|+.-.+
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 47899999999999999999999999988654444 6889999999986544
No 69
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=94.21 E-value=0.94 Score=50.15 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=39.3
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCC--------CCCCCCCchhHHHhhHHHhhh
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGK--------VPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~--------~~~~~~npdeaVA~GAai~aa 370 (668)
-...|+|+||+|.+|.+..+|.+.+.. .+..+.+|...+=+||+++|.
T Consensus 362 l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 362 LYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred HhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 368999999999999999999987721 224566888889999999886
No 70
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.17 E-value=0.1 Score=58.54 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.|.++||.++.+...+++.+.||.++.... .|+.++|||+.|+.-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999885432 37999999999886554
No 71
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.13 E-value=0.1 Score=59.41 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=43.4
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
.++.|.++||.++++...+++.+.||.++....++ |+.++|||+.|+.-.+
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 47899999999999999999999999988655444 5789999999986544
No 72
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=94.10 E-value=3.7 Score=49.14 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=62.8
Q ss_pred ceEEEeeHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCC----------
Q psy3918 285 HMNLKLTRSKFESLVG---DLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVP---------- 351 (668)
Q Consensus 285 ~~~~~iTr~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~---------- 351 (668)
+..+.|+..++...+- -.+..++..+-+++...+ -|-++|+|--||+|.||.++++..+.++
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4457889988888664 345555555555555443 4789999999999999999999885443
Q ss_pred ----------CCCCCchhHHHhhHHHhhhhhcCCCCce
Q psy3918 352 ----------SRAVNPDEAVAIGAAVQGGVLAGDVTDV 379 (668)
Q Consensus 352 ----------~~~~npdeaVA~GAai~aa~ls~~~~~~ 379 (668)
.+.-||...||.||.+.+-....+..++
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF 842 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNF 842 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCc
Confidence 1345899999999987654433233333
No 73
>PRK13317 pantothenate kinase; Provisional
Probab=94.05 E-value=0.099 Score=54.21 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCceEEEec-CccCcHHHHHHHHHHh---CCCCCCCCCchhHHHhhHHHhhh
Q psy3918 323 DIGEVLLVG-GMTRMPKVQSTVQEIF---GKVPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 323 ~I~~ViLVG-GssriP~V~~~l~~~F---g~~~~~~~npdeaVA~GAai~aa 370 (668)
.++.|+++| |.++.|.+++.+.+++ +.++..+.||..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457899999 7999999999999988 56677788999999999999875
No 74
>KOG2517|consensus
Probab=93.91 E-value=0.19 Score=55.75 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCC
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGD 375 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~ 375 (668)
+.-++..+|+..-++.+ ..|+.+.+.||.|+-|.+.+.+.+.+|.++.++.++|. |++|||+.|+..+++
T Consensus 396 i~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 396 IAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 33444444444444443 46788999999999999999999999999888888887 999999999988765
No 75
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=93.90 E-value=8.4 Score=45.20 Aligned_cols=37 Identities=81% Similarity=1.169 Sum_probs=33.2
Q ss_pred ccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 422 VTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 422 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
+.++.++|+.|+++|++..++.|..++++|+++|...
T Consensus 390 ~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~ 426 (653)
T PTZ00009 390 VQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKK 426 (653)
T ss_pred ccceEEEeecccccCccccCCceEEEEeCCCcCCccc
Confidence 4568899999999999999999999999999999754
No 76
>KOG0102|consensus
Probab=93.52 E-value=0.025 Score=61.86 Aligned_cols=47 Identities=89% Similarity=1.290 Sum_probs=42.9
Q ss_pred ecccccCCccceeeeeccccccccccccceeEEeeecCcccCCCCCc
Q psy3918 414 QGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQ 460 (668)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q 460 (668)
+..++.+++.++.++|++|+++|+++.++.|+.+++||+++|....|
T Consensus 398 qggvl~geVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksq 444 (640)
T KOG0102|consen 398 QGGVLSGEVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQ 444 (640)
T ss_pred ccchhhccccceeeeecchHHHHHHhhhhhheecccCCcccCchhhh
Confidence 34677889999999999999999999999999999999999987665
No 77
>KOG2531|consensus
Probab=93.07 E-value=0.27 Score=52.93 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=47.0
Q ss_pred HHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhh
Q psy3918 315 QDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 315 ~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa 370 (668)
+..+.....-..|++|||.||-..|-+.|.+.||.++... +-.++.|+|+|++|+
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~ 488 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAA 488 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHH
Confidence 3456666677899999999999999999999999887654 778899999999976
No 78
>PLN03184 chloroplast Hsp70; Provisional
Probab=92.27 E-value=3.9 Score=48.08 Aligned_cols=39 Identities=72% Similarity=1.192 Sum_probs=34.5
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
..+.++.+.|+.|+++|++..++.|..++++|+++|.+.
T Consensus 416 ~~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~ 454 (673)
T PLN03184 416 GEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSK 454 (673)
T ss_pred cCccceEEEecccccceEEecCCeeEEEEeCCCccceec
Confidence 345678899999999999999999999999999999754
No 79
>KOG0100|consensus
Probab=91.78 E-value=0.11 Score=54.80 Aligned_cols=42 Identities=69% Similarity=1.051 Sum_probs=38.5
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCCCcc
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQT 461 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~ 461 (668)
.+.++++++|++|+++|+++.|+.++.+|+||+.+|....|-
T Consensus 416 e~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQv 457 (663)
T KOG0100|consen 416 EDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQV 457 (663)
T ss_pred cCcCcEEEEeeccccceeeeecceeeccccCCcccCccccce
Confidence 367789999999999999999999999999999999887763
No 80
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=91.30 E-value=0.53 Score=53.33 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=37.6
Q ss_pred CCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhh
Q psy3918 322 SDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVL 372 (668)
Q Consensus 322 ~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~l 372 (668)
..++.|.++||++|.++..+++.+.||.++..... .|+.+.|+|+.++.-
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHHHHHHH
Confidence 34679999999999999999999999998764433 455555555555443
No 81
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=89.17 E-value=1.5 Score=42.50 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=27.7
Q ss_pred eChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCC
Q psy3918 166 YSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAY 201 (668)
Q Consensus 166 ~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~ 201 (668)
..++.+ +..++.+.+.+++.+|.++.++++++|..
T Consensus 43 ~d~~~~-~~~I~~ai~~ae~~~~~~i~~V~v~i~g~ 77 (187)
T smart00842 43 VDIEAA-ARAIREAVEEAERMAGVKIDSVYVGISGR 77 (187)
T ss_pred ECHHHH-HHHHHHHHHHHHHHhCCcccEEEEEEcCC
Confidence 344444 66778888888999999999999999965
No 82
>KOG0676|consensus
Probab=89.09 E-value=3.4 Score=44.42 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=24.8
Q ss_pred cCCCCCCCceEEEecCccCcHHHHHHHHHHh
Q psy3918 317 ADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF 347 (668)
Q Consensus 317 a~~~~~~I~~ViLVGGssriP~V~~~l~~~F 347 (668)
..+.+.-...|+|+||+|.+|.+.++|++-.
T Consensus 284 ~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 284 IDLRKDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred hhHhHHHHhheEEeCCcccchhHHHHHHHHH
Confidence 3344445679999999999999999888765
No 83
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=87.73 E-value=15 Score=43.15 Aligned_cols=39 Identities=87% Similarity=1.309 Sum_probs=34.6
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
+.+.++.+.|+.|.++|++..++.|..++++|+++|...
T Consensus 418 ~~~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~ 456 (663)
T PTZ00400 418 GEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKK 456 (663)
T ss_pred CCccceEEEeccccceEEEecCCeeEEEEecCccCCccc
Confidence 345678899999999999999999999999999999754
No 84
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=86.53 E-value=1.7 Score=46.05 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCC---CCCCCCCchhHHHhhHH
Q psy3918 294 KFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGK---VPSRAVNPDEAVAIGAA 366 (668)
Q Consensus 294 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~---~~~~~~npdeaVA~GAa 366 (668)
++.++++..++++.+-|.+.+. ...+++.|+||||++ ..+.+.|++.|+. .....-||..|-|+|-+
T Consensus 247 ~v~~~i~~~~~~l~~~i~~~~~----~~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 247 DVSEVIEEAVEELINRILRELG----DFSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----TS-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 3444444444444444444443 235689999999997 5778999999873 34567789999999953
No 85
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=86.42 E-value=2.9 Score=43.09 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHh-----CCCCCCCCCchhHHHhhHHHhh
Q psy3918 298 LVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF-----GKVPSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 298 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~F-----g~~~~~~~npdeaVA~GAai~a 369 (668)
++....+.+.+.+..++........ .|+|+||..+.+.+++.+.+.+ ..+......|....|.|||++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 4444444455555555555543322 2999999999977777674444 2334456789999999999986
No 86
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=85.32 E-value=22 Score=41.21 Aligned_cols=39 Identities=49% Similarity=0.814 Sum_probs=34.5
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
....++.++|+.|+++|+++.++.|..+++||+++|...
T Consensus 359 ~~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~ 397 (595)
T PRK01433 359 APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISV 397 (595)
T ss_pred CCccceEEEEecccceEEEecCCEEEEEEECCCccccee
Confidence 345578899999999999999999999999999999754
No 87
>PRK13410 molecular chaperone DnaK; Provisional
Probab=85.30 E-value=40 Score=39.73 Aligned_cols=41 Identities=68% Similarity=1.142 Sum_probs=35.9
Q ss_pred cCCccceeeeeccccccccccccceeEEeeecCcccCCCCC
Q psy3918 419 AGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS 459 (668)
Q Consensus 419 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~ 459 (668)
.+.+.++.+.|+.|+++|+++.++.|..+|++|+++|....
T Consensus 378 s~~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~ 418 (668)
T PRK13410 378 AGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRS 418 (668)
T ss_pred cccccceeEEeeccccccceecCCeeEEEEeCCCccccccc
Confidence 34567788999999999999999999999999999997543
No 88
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=85.14 E-value=1.9 Score=47.88 Aligned_cols=59 Identities=25% Similarity=0.436 Sum_probs=48.5
Q ss_pred HHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 312 KALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 312 ~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
+++++.|+ .|+.|+..||-.+-|.+.+.+.+..|.++... ..++++++|+|+.|+.-.+
T Consensus 423 e~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 423 ETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHHHHHhc
Confidence 34455555 48999999999999999999999999876544 6788999999999986554
No 89
>KOG0681|consensus
Probab=84.42 E-value=1.2 Score=49.17 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCCC--CCceEEEecCccCcHHHHHHHHHHh------CCC--CCCCCCchhHHHhhHHHhhhhh
Q psy3918 306 TVNPCQKALQDADCKNS--DIGEVLLVGGMTRMPKVQSTVQEIF------GKV--PSRAVNPDEAVAIGAAVQGGVL 372 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~--~I~~ViLVGGssriP~V~~~l~~~F------g~~--~~~~~npdeaVA~GAai~aa~l 372 (668)
+.++++.+|...-.+.. .+..|+|+||.+.+|.+.++|..-| |.+ +....||-..+=+||+.+|+..
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANP 615 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCc
Confidence 55566666655422222 2899999999999999999999876 332 3567889888999999998853
No 90
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=84.06 E-value=4.8 Score=41.71 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=43.1
Q ss_pred CceEEEecC--ccCcH-HHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceE
Q psy3918 324 IGEVLLVGG--MTRMP-KVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVL 380 (668)
Q Consensus 324 I~~ViLVGG--ssriP-~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~ 380 (668)
...|+|.|- +.|.| .|++.|+++|..++ ..+.. ++.|.|+|+.|--+.+..++++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V-~~L~~-ksAA~G~AiIA~dI~gGk~~iL 320 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKV-LVLDS-ESAAIGLALIAEDIFSGKREIL 320 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCe-EEecc-hhhhhhHHHHHHHHhCCcceEe
Confidence 358999987 99999 99999999997543 33344 7889999999987777666654
No 91
>KOG0679|consensus
Probab=83.95 E-value=33 Score=36.79 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=21.8
Q ss_pred CceEEEecCccCcHHHHHHHHHHh
Q psy3918 324 IGEVLLVGGMTRMPKVQSTVQEIF 347 (668)
Q Consensus 324 I~~ViLVGGssriP~V~~~l~~~F 347 (668)
...|+++||.|.||.+.++|.+-+
T Consensus 342 ~~nVivtGGtSliqG~s~RL~~EL 365 (426)
T KOG0679|consen 342 LGNVIVTGGTSLIQGFSERLNKEL 365 (426)
T ss_pred hccEEEecCcchhhhHHHHHHHHH
Confidence 579999999999999999998776
No 92
>CHL00094 dnaK heat shock protein 70
Probab=82.44 E-value=37 Score=39.58 Aligned_cols=39 Identities=79% Similarity=1.238 Sum_probs=34.4
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
+...++.+.|+.|+++|++..++.|..++++|+++|...
T Consensus 379 ~~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~ 417 (621)
T CHL00094 379 GEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKK 417 (621)
T ss_pred CCccceeeeeeeceeeeeeccCCEEEEEEeCCCccceee
Confidence 345678899999999999999999999999999999754
No 93
>PRK13411 molecular chaperone DnaK; Provisional
Probab=82.43 E-value=36 Score=40.00 Aligned_cols=40 Identities=78% Similarity=1.164 Sum_probs=35.2
Q ss_pred cCCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 419 AGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 419 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
.+.+.++.+.|+.|+++|++..++.|..++++|+++|...
T Consensus 378 ~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~ 417 (653)
T PRK13411 378 GGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSK 417 (653)
T ss_pred cCCccceeeeecccceeeEEecCCceEEEEECCCccccee
Confidence 3346678899999999999999999999999999999754
No 94
>PRK00976 hypothetical protein; Provisional
Probab=80.77 E-value=6.3 Score=41.58 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=42.5
Q ss_pred CCceEEEecCccCcH--HHHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCceE
Q psy3918 323 DIGEVLLVGGMTRMP--KVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVL 380 (668)
Q Consensus 323 ~I~~ViLVGGssriP--~V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~~ 380 (668)
+.+.|+|-||.++.+ .+.+.+++++... ...-..++-++|||+.|.-+.+..++++
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~il 320 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDIL 320 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceee
Confidence 468999999999998 8888998888543 2233457999999999887766555544
No 95
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=80.17 E-value=45 Score=38.99 Aligned_cols=40 Identities=90% Similarity=1.262 Sum_probs=35.0
Q ss_pred cCCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 419 AGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 419 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
.+.+.++.+.|+.|+++|++..++.|..++++|+++|...
T Consensus 376 ~~~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~ 415 (627)
T PRK00290 376 AGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 415 (627)
T ss_pred cCCccceeeeeccceEEEEEecCCeEEEEecCCCcCCccc
Confidence 3456678899999999999999999999999999999754
No 96
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=79.75 E-value=5.7 Score=43.68 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=57.8
Q ss_pred EEeeHH-HHHHHHHHHHHH----HHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHH
Q psy3918 288 LKLTRS-KFESLVGDLIKK----TVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVA 362 (668)
Q Consensus 288 ~~iTr~-efe~l~~~l~~~----i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA 362 (668)
+-|||. .-+.+++..++. +.++++..-++++. .++.+-+=||.++..++.+...+.+|.++.++.+ .|..|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTA 440 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTA 440 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhH
Confidence 455542 223344444444 44455444445554 5788888999999999999999999988876655 45789
Q ss_pred hhHHHhhhhhcC
Q psy3918 363 IGAAVQGGVLAG 374 (668)
Q Consensus 363 ~GAai~aa~ls~ 374 (668)
+|||+.|+.-.+
T Consensus 441 lGaA~lAGla~G 452 (499)
T COG0554 441 LGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHhhhhC
Confidence 999999986655
No 97
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=78.97 E-value=30 Score=40.09 Aligned_cols=39 Identities=90% Similarity=1.274 Sum_probs=34.4
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCC
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKK 458 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~ 458 (668)
+.+.++.+.|+.|+++|++..++.|..++++|+++|...
T Consensus 375 ~~~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~ 413 (595)
T TIGR02350 375 GDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 413 (595)
T ss_pred CCcccceeeecccceeEEEecCCceEEEEeCCCcCCccc
Confidence 345678899999999999999999999999999999754
No 98
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=78.71 E-value=4 Score=42.25 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=38.2
Q ss_pred CCCceEEEecC-ccCcHHHHHHHHHHhC---CCCCCCCCchhHHHhhHHH
Q psy3918 322 SDIGEVLLVGG-MTRMPKVQSTVQEIFG---KVPSRAVNPDEAVAIGAAV 367 (668)
Q Consensus 322 ~~I~~ViLVGG-ssriP~V~~~l~~~Fg---~~~~~~~npdeaVA~GAai 367 (668)
..+..|+++|| .+..|.+++.+...+. .+...+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 6679999999998873 4456677888999999986
No 99
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=78.40 E-value=41 Score=39.02 Aligned_cols=37 Identities=62% Similarity=1.058 Sum_probs=33.5
Q ss_pred cceeeeeccccccccccccceeEEeeecCcccCCCCC
Q psy3918 423 TDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS 459 (668)
Q Consensus 423 ~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~ 459 (668)
.++.+.|+.|+++|+++.++.|..++++|+++|.+..
T Consensus 368 ~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~ 404 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARA 404 (599)
T ss_pred CceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccce
Confidence 4688999999999999999999999999999998643
No 100
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=77.69 E-value=85 Score=36.62 Aligned_cols=38 Identities=58% Similarity=0.996 Sum_probs=34.0
Q ss_pred ccceeeeeccccccccccccceeEEeeecCcccCCCCC
Q psy3918 422 VTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS 459 (668)
Q Consensus 422 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~ 459 (668)
..++.+.|+.|+++|++..++.|.+++++|+++|.+..
T Consensus 383 ~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~ 420 (616)
T PRK05183 383 DSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARA 420 (616)
T ss_pred cCceEEEeeccccccceecCCeEEEEEeCCCccccccc
Confidence 34688999999999999999999999999999998654
No 101
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=77.11 E-value=2.4 Score=42.93 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=16.7
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
+++|||+|||++++++++
T Consensus 1 y~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEe
Confidence 479999999999999997
No 102
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=76.10 E-value=41 Score=37.36 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=28.1
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHH--------H-HHcCCC-CCCCceEEEecCccC
Q psy3918 289 KLTRSKFESLVGDLIKKTVNPCQKA--------L-QDADCK-NSDIGEVLLVGGMTR 335 (668)
Q Consensus 289 ~iTr~efe~l~~~l~~~i~~~i~~~--------L-~~a~~~-~~~I~~ViLVGGssr 335 (668)
.++.++++.+|+-+.+-+.+.+... | -...+. ...++.|.+.||-+.
T Consensus 209 ~~~~~~l~~i~~~Ma~~l~~~i~~~~~~~~~~~L~~~~~l~~~~~~~~v~fSGGVad 265 (473)
T PF06277_consen 209 RADPEQLRKICRRMAELLVEVIGGKPLSPLAEELLTTPPLPDDYPIDAVTFSGGVAD 265 (473)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCcCCCCCEEEEechHHH
Confidence 4667778777776665555544322 1 111222 346899999999654
No 103
>KOG0101|consensus
Probab=72.56 E-value=2.9 Score=47.68 Aligned_cols=47 Identities=62% Similarity=0.907 Sum_probs=40.1
Q ss_pred CCccceeeeeccccccccccccceeEEeeecCcccCCCCCcceEEEE
Q psy3918 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIK 466 (668)
Q Consensus 420 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q~~~~i~ 466 (668)
.+..+++++|+.|+++|++..++.|+.++++|+.+|....|+..+..
T Consensus 390 ~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~ 436 (620)
T KOG0101|consen 390 LNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYS 436 (620)
T ss_pred ccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeec
Confidence 35578999999999999999999999999999999987766554443
No 104
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=72.41 E-value=0.42 Score=44.87 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCcCCCcchhhccccC-CCCCceEEEEEcCCceEEEEEEeCC
Q psy3918 37 GSLYSQNESLQARYKS-DGVKGQVIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 37 ~~~~~~~~~~~~~~~~-~~~~~~vvGIDlGTt~s~vA~~~~~ 77 (668)
++-+++.+..-.+.++ ...-+-+||+|+||+|+|++..++.
T Consensus 36 ~s~~~qn~a~~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 36 SSYIGQNYASFSRAFGSKPVVNDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred ccccccchHHHHHHhcCCCCccceeccCCCcchHHHHHHhcc
Confidence 3344555554444333 3455679999999999999987643
No 105
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=72.24 E-value=3.5 Score=35.05 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=16.4
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.++|||+|.|++.+|+++
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 489999999999999985
No 106
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=69.81 E-value=4.8 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.7
Q ss_pred CCceEEEEEcCCceEEEEEEeCC
Q psy3918 55 VKGQVIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 55 ~~~~vvGIDlGTt~s~vA~~~~~ 77 (668)
.+.+++|||+|||++++.+++..
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCC
Confidence 35689999999999999998754
No 107
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=69.27 E-value=15 Score=38.97 Aligned_cols=53 Identities=26% Similarity=0.470 Sum_probs=38.4
Q ss_pred CCCceEEEecCccCcHHHHHHHHHHhCCC---CCCCCCc----hhHHHhhHHHhhhhhcC
Q psy3918 322 SDIGEVLLVGGMTRMPKVQSTVQEIFGKV---PSRAVNP----DEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 322 ~~I~~ViLVGGssriP~V~~~l~~~Fg~~---~~~~~np----deaVA~GAai~aa~ls~ 374 (668)
.+.+.|+|.|-.+++|-+.+.+++.|... ....+.+ -...|.|||+.|.-+.+
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 46789999999999999998888887431 1222222 23488999998876665
No 108
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.64 E-value=5.7 Score=36.47 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.2
Q ss_pred ceEEEEEcCCceEEEEEEeCC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~ 77 (668)
+.++|||+|+..+++|+.+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 368999999999999999864
No 109
>PRK03011 butyrate kinase; Provisional
Probab=67.94 E-value=9.4 Score=41.18 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCC----CCCCCCCchhHHHhhHHH
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGK----VPSRAVNPDEAVAIGAAV 367 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~----~~~~~~npdeaVA~GAai 367 (668)
++|.|+|.||.+..+.+.+.|++.+.. .+....+-.+|.+.||+-
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 689999999999999999999887742 224455567899999853
No 110
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=64.87 E-value=5.4 Score=40.63 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.8
Q ss_pred EEEEEcCCceEEEEEEeCC
Q psy3918 59 VIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~ 77 (668)
++|||+|||++++++++++
T Consensus 2 ~lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEEcChhheEEEEEcCC
Confidence 7899999999999999733
No 111
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=64.77 E-value=22 Score=38.44 Aligned_cols=70 Identities=23% Similarity=0.218 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCC-CC------CCCCCchhHHHhhHHHh
Q psy3918 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGK-VP------SRAVNPDEAVAIGAAVQ 368 (668)
Q Consensus 296 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~-~~------~~~~npdeaVA~GAai~ 368 (668)
++++.-+.+=+...|.+.++.... .++.|++.||+.+-|.+.+.|++.++. .+ ..+.+.-||++. |++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHH
Confidence 444445555555566666665532 378999999999999999999999965 22 123344566554 555
Q ss_pred hh
Q psy3918 369 GG 370 (668)
Q Consensus 369 aa 370 (668)
|.
T Consensus 335 a~ 336 (364)
T PF03702_consen 335 AY 336 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 112
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=64.59 E-value=34 Score=36.94 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCC----CCCCchhHHHhhHHHhhh
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPS----RAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~----~~~npdeaVA~GAai~aa 370 (668)
+.+=+...|.+.+.... ...+.|++.||+++-|++.++|++.++..+. ..++++--=|..-|++|.
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHH
Confidence 33444445555554432 2346899999999999999999999963221 124444333444556664
No 113
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.64 E-value=22 Score=27.54 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC
Q psy3918 181 ETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220 (668)
Q Consensus 181 ~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 220 (668)
+..+++.... ...++.|+.++..+|..+.+.|...||.
T Consensus 6 ~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~ 43 (59)
T cd06007 6 KALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLK 43 (59)
T ss_pred HHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3444555444 6788999999999999999999999998
No 114
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=63.33 E-value=6 Score=40.48 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=35.7
Q ss_pred CCCCceEEEecCccCcHHHHHHHHHHhCCC--------CCCCCCchhHHHhhHHHh
Q psy3918 321 NSDIGEVLLVGGMTRMPKVQSTVQEIFGKV--------PSRAVNPDEAVAIGAAVQ 368 (668)
Q Consensus 321 ~~~I~~ViLVGGssriP~V~~~l~~~Fg~~--------~~~~~npdeaVA~GAai~ 368 (668)
..+|+.|+|||||+.=--|-+++.+.+... +.-..-|..|||.|.++.
T Consensus 273 iR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvls 328 (332)
T PF08841_consen 273 IRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLS 328 (332)
T ss_dssp CCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHH
T ss_pred cccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHh
Confidence 467999999999999888888888887322 223456999999998874
No 115
>PRK10331 L-fuculokinase; Provisional
Probab=62.13 E-value=6.4 Score=44.20 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.9
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.++|||+|||++++++++
T Consensus 3 ~~lgID~GTt~~Ka~l~d 20 (470)
T PRK10331 3 VILVLDCGATNVRAIAVD 20 (470)
T ss_pred eEEEEecCCCceEEEEEc
Confidence 689999999999999996
No 116
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=61.68 E-value=11 Score=33.73 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=17.2
Q ss_pred EEEEEcCCceEEEEEEeCCee
Q psy3918 59 VIGIDLGTTNSCVAVMEGKQA 79 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~~~ 79 (668)
|++||+|++.++++++..+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999987543
No 117
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=61.30 E-value=9.3 Score=35.19 Aligned_cols=20 Identities=40% Similarity=0.742 Sum_probs=17.8
Q ss_pred ceEEEEEcCCceEEEEEEeC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~ 76 (668)
+.++|||+|+..+++|+.+.
T Consensus 4 ~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CcEEEEEeCCCEEEEEEecC
Confidence 45999999999999998865
No 118
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=59.82 E-value=11 Score=35.44 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=16.2
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.|+|||.|+++++.|+.+
T Consensus 1 rILGIDPGl~~~G~av~~ 18 (154)
T cd00529 1 RILGIDPGSRNTGYGVIE 18 (154)
T ss_pred CEEEEccCcCceEEEEEE
Confidence 389999999999999885
No 119
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=59.46 E-value=8.7 Score=43.73 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.9
Q ss_pred ceEEEEEcCCceEEEEEEeC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~ 76 (668)
..++|||+|||++++++++.
T Consensus 3 ~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred cEEEEEecCCCceEEEEECC
Confidence 37999999999999999963
No 120
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=58.82 E-value=8.8 Score=43.50 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=17.4
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
.++|||+|||++++++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 6899999999999999974
No 121
>PRK00047 glpK glycerol kinase; Provisional
Probab=56.57 E-value=11 Score=42.72 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=17.4
Q ss_pred ceEEEEEcCCceEEEEEEe
Q psy3918 57 GQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~ 75 (668)
..++|||+|||++++++++
T Consensus 5 ~~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFD 23 (498)
T ss_pred CEEEEEecCCCceEEEEEC
Confidence 4799999999999999986
No 122
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=56.28 E-value=10 Score=42.51 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.2
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
.++|||+|||++++++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999973
No 123
>PRK04123 ribulokinase; Provisional
Probab=54.70 E-value=11 Score=43.17 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.4
Q ss_pred ceEEEEEcCCceEEEEEEe
Q psy3918 57 GQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~ 75 (668)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 3689999999999999997
No 124
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=54.42 E-value=13 Score=34.38 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.3
Q ss_pred ceEEEEEcCCceEEEEEEeCC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~ 77 (668)
+.++|||+||-.++||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 478999999999999988754
No 125
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=54.15 E-value=11 Score=43.08 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=17.0
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 126
>PRK15027 xylulokinase; Provisional
Probab=53.68 E-value=11 Score=42.50 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=16.8
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 3799999999999999973
No 127
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=52.84 E-value=12 Score=42.56 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=16.8
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
.++|||+|||++++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999963
No 128
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=52.27 E-value=27 Score=41.24 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhC---CCCCC---CCCchhHHHhhHHHhhh
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFG---KVPSR---AVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg---~~~~~---~~npdeaVA~GAai~aa 370 (668)
.++.|+|.||..+-.++.+.|.+.+. .++.. ..--|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998874 23322 23458899999988774
No 129
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.04 E-value=49 Score=25.76 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC
Q psy3918 180 KETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220 (668)
Q Consensus 180 k~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 220 (668)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||.
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~ 44 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLK 44 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 44445554433 46778999999999999999999999998
No 130
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=51.74 E-value=14 Score=38.48 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.7
Q ss_pred ceEEEEEcCCceEEEEEEeCC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~ 77 (668)
+..+|||+|+|++.+++++++
T Consensus 32 m~~~GIDiGStt~K~Vlld~~ 52 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCDG 52 (293)
T ss_pred cEEEEEEeCchhEEEEEEeCC
Confidence 578999999999999999854
No 131
>PLN02295 glycerol kinase
Probab=51.06 E-value=13 Score=42.27 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=16.5
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.++|||+|||++++++++
T Consensus 1 ~vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYD 18 (512)
T ss_pred CEEEEecCCCceEEEEEC
Confidence 479999999999999996
No 132
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=50.78 E-value=14 Score=41.77 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.7
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.++|||+|||++++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD 19 (493)
T ss_pred eEEEEecCCCceEEEEEC
Confidence 589999999999999996
No 133
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.28 E-value=14 Score=42.25 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=16.0
Q ss_pred EEEEEcCCceEEEEEEe
Q psy3918 59 VIGIDLGTTNSCVAVME 75 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~ 75 (668)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 79999999999999996
No 134
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=48.17 E-value=48 Score=35.83 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred EEeeHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCce-EEEecCccCcHHHHHHHHHHhCCC-C-CCCCCchhHHHh
Q psy3918 288 LKLTRSKFESLVGDLIKKT-VNPCQKALQDADCKNSDIGE-VLLVGGMTRMPKVQSTVQEIFGKV-P-SRAVNPDEAVAI 363 (668)
Q Consensus 288 ~~iTr~efe~l~~~l~~~i-~~~i~~~L~~a~~~~~~I~~-ViLVGGssriP~V~~~l~~~Fg~~-~-~~~~npdeaVA~ 363 (668)
..-.+.++-..++..++++ +..++.+++..+ ++. +.|.||...--..-..|.+..+-+ + +.+.--|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3455677777777777775 467777777776 355 999999888777777777664432 3 334445899999
Q ss_pred hHHHhhhhhcC
Q psy3918 364 GAAVQGGVLAG 374 (668)
Q Consensus 364 GAai~aa~ls~ 374 (668)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999985544
No 135
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=46.99 E-value=17 Score=39.50 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.0
Q ss_pred ceEEEEEcCCceEEEEEEeCCe
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGKQ 78 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~~ 78 (668)
.+++|||+|+|.+.+.+++++.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4789999999999999998653
No 136
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=46.93 E-value=19 Score=39.22 Aligned_cols=28 Identities=39% Similarity=0.634 Sum_probs=22.1
Q ss_pred CCCCceEEEEEcCCceEEEEEEeCCeeeEe
Q psy3918 53 DGVKGQVIGIDLGTTNSCVAVMEGKQAKVI 82 (668)
Q Consensus 53 ~~~~~~vvGIDlGTt~s~vA~~~~~~~~ii 82 (668)
.+..+..+|||.|+|.+.+++.+++ .++
T Consensus 140 ~~~~g~~lGIDiGSTttK~Vl~dd~--~Ii 167 (404)
T TIGR03286 140 ERQEGLTLGIDSGSTTTKAVVMEDN--EVI 167 (404)
T ss_pred hccCCEEEEEEcChhheeeEEEcCC--eEE
Confidence 3455689999999999999998754 444
No 137
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=45.72 E-value=15 Score=34.90 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.2
Q ss_pred ceEEEEEcCCceEEEEEEe
Q psy3918 57 GQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~ 75 (668)
+.|+|||-|+++++.|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4699999999999999886
No 138
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=44.94 E-value=66 Score=24.96 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC
Q psy3918 179 MKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220 (668)
Q Consensus 179 lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 220 (668)
+.+....+.... ....++.|+.++..||..+.+.|+..||.
T Consensus 4 ~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~ 44 (60)
T cd02641 4 LKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLR 44 (60)
T ss_pred HHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCc
Confidence 344444554433 33678999999999999999999999998
No 139
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=44.07 E-value=2.4e+02 Score=25.28 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3918 587 EECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAE 639 (668)
Q Consensus 587 ~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~~~~~~ 639 (668)
..++++.+.|++-.+.|+.. ...++.+-+.|+.....+-..+++..++.
T Consensus 66 ~~k~~~~~eL~er~E~Le~r----i~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 66 VSKEEAVDELEERKETLELR----IKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666777777777777642 45566666667777777777777766443
No 140
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=43.66 E-value=1.9e+02 Score=26.74 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHHHHh-hH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q psy3918 533 GLSKDEIENMVKNAEQYATE-DK--------VKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLI 603 (668)
Q Consensus 533 ~ls~~ei~~~~~~~~~~~~~-D~--------~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl 603 (668)
..|+++|+.+....+.+.+. |+ ..+...+.+|.+-+=+-.+|..|......++++|+..+++.-.++-+-|
T Consensus 29 tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L 108 (142)
T TIGR03042 29 TYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDL 108 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHH
Confidence 46888888877776665432 21 2223345556555555556666655666778888888888877777776
Q ss_pred hc
Q psy3918 604 AN 605 (668)
Q Consensus 604 ~~ 605 (668)
.+
T Consensus 109 ~~ 110 (142)
T TIGR03042 109 EK 110 (142)
T ss_pred HH
Confidence 64
No 141
>PRK09604 UGMP family protein; Validated
Probab=43.62 E-value=53 Score=35.03 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHh---CCCCCCC---CCchhHHHhhHHHhh
Q psy3918 306 TVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF---GKVPSRA---VNPDEAVAIGAAVQG 369 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~F---g~~~~~~---~npdeaVA~GAai~a 369 (668)
+.+.++.+++. ..++.|+|.||..+-.++++.|.+.+ |..+..+ +--|.++++|+|=+-
T Consensus 242 l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 242 LVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred HHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 33444444443 24678999999999999999999988 4433222 235889999987443
No 142
>PLN02669 xylulokinase
Probab=43.43 E-value=25 Score=40.47 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=18.1
Q ss_pred CceEEEEEcCCceEEEEEEe
Q psy3918 56 KGQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~ 75 (668)
...++|||+||+.+++++++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCeEEEEecccCCeEEEEEc
Confidence 55799999999999999986
No 143
>PRK13317 pantothenate kinase; Provisional
Probab=42.81 E-value=22 Score=36.95 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.9
Q ss_pred ceEEEEEcCCceEEEEEEeCC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~~ 77 (668)
...||||+|+|.+++++.+.+
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred CceEEEEeCcccEEEEEEcCC
Confidence 367999999999999998753
No 144
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=42.75 E-value=42 Score=36.89 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=0.0
Q ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhh
Q psy3918 287 NLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIG 364 (668)
Q Consensus 287 ~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~G 364 (668)
.+.||..++ .-++---.-+..-++-.|++++++.++|+.|+|.||++. .+|++.++.+|
T Consensus 292 ~i~itq~DI-r~~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~------------------~l~~~~a~~iG 350 (412)
T PF14574_consen 292 DIYITQKDI-REFQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGN------------------YLDPESAIRIG 350 (412)
T ss_dssp -EEEEHHHH-HHHHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-S------------------EEEHHHHHHTT
T ss_pred CEEEeHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccc------------------cCCHHHHhhcC
No 145
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.22 E-value=63 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC
Q psy3918 178 KMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220 (668)
Q Consensus 178 ~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 220 (668)
.+++..+.++... .-.++-|+ ++..+|..+.+.|...||.
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~ 42 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLK 42 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCc
Confidence 4555566665444 45679999 8999999999999999998
No 146
>KOG0797|consensus
Probab=41.73 E-value=9.7 Score=42.02 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=40.0
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhC------CC---------CCCCCCchhHHHhhHHHhhhhhc
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFG------KV---------PSRAVNPDEAVAIGAAVQGGVLA 373 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg------~~---------~~~~~npdeaVA~GAai~aa~ls 373 (668)
--+.|++|||+...|.+.+.|++..- .. +.+.+||.-.+=.|||++|-+-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 35789999999999999999998763 11 23457888888889999986543
No 147
>PF13941 MutL: MutL protein
Probab=41.55 E-value=20 Score=39.82 Aligned_cols=43 Identities=26% Similarity=0.567 Sum_probs=32.0
Q ss_pred EEEEEcCCceEEEEEEe--CCeeeEecCCCCCccccEEEEEecCCcEEEcHH
Q psy3918 59 VIGIDLGTTNSCVAVME--GKQAKVIENSEGSRTTPSVVAFTKDGERLVGTP 108 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~--~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~ 108 (668)
++-+|||+||+++..++ .+.+.++ |.-..||.| .+ +.+..|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--Cc-ccHHHHHH
Confidence 68899999999999998 7778887 455678877 22 34555543
No 148
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=40.19 E-value=40 Score=31.43 Aligned_cols=17 Identities=47% Similarity=0.780 Sum_probs=13.8
Q ss_pred EEEEEcCCceEEEEEEe
Q psy3918 59 VIGIDLGTTNSCVAVME 75 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~ 75 (668)
|+|||-|+++++.|+.+
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 79999999999999985
No 149
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.10 E-value=3.5e+02 Score=29.93 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHH
Q psy3918 536 KDEIENMVKNAEQYAT----EDKVKRDRVEALNQAESIVHDTESKMEEFKA---------QLPAEECAKLKEQIAELQKL 602 (668)
Q Consensus 536 ~~ei~~~~~~~~~~~~----~D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~---------~~~~~e~~~i~~~l~~~~~w 602 (668)
-+++.++++.+.++.. -+++.|+...--|.+++++..|+.+++++-. ..-++|.+.+++..+++..-
T Consensus 280 n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 280 NDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456666666666543 3556666667789999999999998865322 23356666666777777666
Q ss_pred HhcCCCCCHHHHHHH
Q psy3918 603 IANKDSVDPEELRKA 617 (668)
Q Consensus 603 l~~~~~~~~~~~~~~ 617 (668)
+.+.. ..+++|+..
T Consensus 360 ~~kq~-Is~e~fe~m 373 (622)
T COG5185 360 LRKQG-ISTEQFELM 373 (622)
T ss_pred HHhcC-CCHHHHHHH
Confidence 66532 345555443
No 150
>PLN03170 chalcone synthase; Provisional
Probab=39.46 E-value=73 Score=34.96 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCcc-CcHHHHHHHHHHhCCCC
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMT-RMPKVQSTVQEIFGKVP 351 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGss-riP~V~~~l~~~Fg~~~ 351 (668)
-.+=..+.++++|+++++++++|+.|+++-.+. .+|.+--.|.+.+|...
T Consensus 106 a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 106 VPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 344456788999999999999999998877544 59999999999998654
No 151
>PLN03173 chalcone synthase; Provisional
Probab=39.15 E-value=83 Score=34.41 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCceEEEecCcc-CcHHHHHHHHHHhCCCC
Q psy3918 293 SKFESLVGD-LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMT-RMPKVQSTVQEIFGKVP 351 (668)
Q Consensus 293 ~efe~l~~~-l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGss-riP~V~~~l~~~Fg~~~ 351 (668)
++-.+++.. -.+=..+.++++|+++++++++||.|+++..+. ..|.+--.|.+.+|...
T Consensus 92 ~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 92 DARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 333344433 334456788999999999999999999876544 58999999999998654
No 152
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=38.99 E-value=1.6e+02 Score=32.81 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred EEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEecCCcEEEcHHHHHhhhhCCCchhhHhhhhhCCCCCChHHHH
Q psy3918 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEIKK 139 (668)
Q Consensus 60 vGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~d~~v~~ 139 (668)
||||+|||.+.+-+.+ -.+.|..+...+|-+--. +.++++
T Consensus 9 VGIDIGTsTTqlvfSr----l~l~n~a~~~~vpr~~I~--dkev~y---------------------------------- 48 (475)
T PRK10719 9 VGIDIGTTTTQVIFSR----LELENRASVFQVPRIEII--DKEIIY---------------------------------- 48 (475)
T ss_pred EEEeccCceEEEEEEE----EEEecccccccCceEEEe--eeEEEE----------------------------------
Q ss_pred hhccCceEEEEcCCCCeeEeC-CCCceeChhhHHHHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcC
Q psy3918 140 DMKNLSYKIVRASNGDAWVQG-SDEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAG 218 (668)
Q Consensus 140 ~~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~ev~a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AG 218 (668)
...+++.. .....+..+.+-..+-...+..--..-.-...-.+||.+...-.+-++.+..++..+|
T Consensus 49 -------------rS~i~fTPl~~~~~ID~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~g 115 (475)
T PRK10719 49 -------------RSPIYFTPLLKQGEIDEAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAG 115 (475)
T ss_pred -------------ecCceecCCCCCccccHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhccccc
No 153
>PRK13321 pantothenate kinase; Reviewed
Probab=38.88 E-value=31 Score=35.25 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=17.4
Q ss_pred EEEEEcCCceEEEEEEeCC
Q psy3918 59 VIGIDLGTTNSCVAVMEGK 77 (668)
Q Consensus 59 vvGIDlGTt~s~vA~~~~~ 77 (668)
+++||+|.|++.+|+++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
No 154
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=38.69 E-value=46 Score=28.99 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=31.7
Q ss_pred ceEEEEEeCCC-ceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHH
Q psy3918 498 QIEVTFDIDAN-GIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQY 549 (668)
Q Consensus 498 ~i~v~f~id~~-Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~ 549 (668)
...+.|.+|.+ |.+.|+..|..||+.. ..++++++-++.+++.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVI-------RqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVI-------RQIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEE-------EEE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEE-------EeCCcHHHHHHHHHHHHH
Confidence 35788999876 8899999999998863 135788888887766664
No 155
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=38.41 E-value=76 Score=33.54 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHh---CCCCCCC---CCchhHHHhhHH
Q psy3918 306 TVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF---GKVPSRA---VNPDEAVAIGAA 366 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~F---g~~~~~~---~npdeaVA~GAa 366 (668)
+.+.++.+++.. .++.|+|.||..+-.++.+.|.+.. +..+..+ +--|.++++|+|
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 334445554433 4678999999999999999999987 4333222 234888888876
No 156
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=38.23 E-value=37 Score=34.88 Aligned_cols=19 Identities=32% Similarity=0.393 Sum_probs=16.8
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
.++|||+|+|.+.+.++++
T Consensus 2 ~~~GIDiGStttK~Vlid~ 20 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV 20 (262)
T ss_pred eEEEEEcCcccEEEEEEec
Confidence 4689999999999999983
No 157
>KOG1029|consensus
Probab=38.00 E-value=2.2e+02 Score=33.46 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy3918 588 ECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKE 641 (668)
Q Consensus 588 e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~~~~~~~~ 641 (668)
|.+-++..+.++.+-++....+..+.|+..+..|+....++.+.++++.+....
T Consensus 564 eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e~~~ 617 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEAESAP 617 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 444455566666666665545567788888888988888899999888765444
No 158
>PRK13318 pantothenate kinase; Reviewed
Probab=37.56 E-value=32 Score=35.15 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=26.7
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccC
Q psy3918 291 TRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTR 335 (668)
Q Consensus 291 Tr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssr 335 (668)
-++.-+.+-.-++......|+..+++..-....--.|+++||.+.
T Consensus 182 g~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~~~vi~TGG~a~ 226 (258)
T PRK13318 182 GKNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKDPKVIATGGLAP 226 (258)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchH
Confidence 345556666666666666666666543221111136899999865
No 159
>PLN03172 chalcone synthase family protein; Provisional
Probab=37.44 E-value=85 Score=34.35 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCcc-CcHHHHHHHHHHhCCCC
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMT-RMPKVQSTVQEIFGKVP 351 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGss-riP~V~~~l~~~Fg~~~ 351 (668)
-.+=..+.++++|+++++++++||.|+++-.+. .+|.+--.|.+.+|...
T Consensus 102 a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 344456788999999999999999998877555 69999999999998654
No 160
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=37.32 E-value=33 Score=33.90 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.3
Q ss_pred CCCceEEEEEcCCceEEEEEEe
Q psy3918 54 GVKGQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 54 ~~~~~vvGIDlGTt~s~vA~~~ 75 (668)
...+.+++||||.||..|+++.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEE
Confidence 3467899999999999999885
No 161
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=37.05 E-value=1.1e+02 Score=35.20 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=56.5
Q ss_pred EEEeeHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCCC------------
Q psy3918 287 NLKLTRSKFESLVGDL---IKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVP------------ 351 (668)
Q Consensus 287 ~~~iTr~efe~l~~~l---~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~~------------ 351 (668)
.+.|.-.++.+.+-.- +....+.+-+++... +-|-++|+|--+|.|.||..++...+.++
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 3566666666554432 333444444444433 34789999999999999999988764322
Q ss_pred --------CCCCCchhHHHhhHHHhhhhhcCCCCce
Q psy3918 352 --------SRAVNPDEAVAIGAAVQGGVLAGDVTDV 379 (668)
Q Consensus 352 --------~~~~npdeaVA~GAai~aa~ls~~~~~~ 379 (668)
.+.-||...+|.||-+-+-.+.-...++
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF 854 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNF 854 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhhccCcce
Confidence 2344789999999877665544444443
No 162
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.91 E-value=53 Score=33.86 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCCCCCceEEEecCccCcHHHHHHHHHHhC----CCCCCCCCchhHHHhhHH
Q psy3918 319 CKNSDIGEVLLVGGMTRMPKVQSTVQEIFG----KVPSRAVNPDEAVAIGAA 366 (668)
Q Consensus 319 ~~~~~I~~ViLVGGssriP~V~~~l~~~Fg----~~~~~~~npdeaVA~GAa 366 (668)
.-+..+|.|+|+||..+...+-++|.++.. .-+...-|-.+|.|.||.
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~l 343 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGAL 343 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhH
Confidence 345779999999999999999999988763 122344566778899874
No 163
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.91 E-value=1.3e+02 Score=28.73 Aligned_cols=56 Identities=13% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3918 569 IVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANK--DSVDPEELRKATTTLQQASLKLFEM 631 (668)
Q Consensus 569 ~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~--~~~~~~~~~~~~~~L~~~~~~i~~r 631 (668)
|+.+++..|+ .+|++|++++ ++.+++.+++. +..+.+++-+.+-.=++.+..+...
T Consensus 6 fL~~L~~~L~----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 6 FLNELEKYLK----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHH----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 4444444443 4677776555 66667777652 3446666666665556666555543
No 164
>PLN02377 3-ketoacyl-CoA synthase
Probab=36.27 E-value=86 Score=35.48 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCceEEE-ecCccCcHHHHHHHHHHhCCC
Q psy3918 299 VGDLIKKTVNPCQKALQDADCKNSDIGEVLL-VGGMTRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 299 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViL-VGGssriP~V~~~l~~~Fg~~ 350 (668)
.+....-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|..
T Consensus 169 ~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 169 REEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 3333444567888899999999999999977 445556899999999999865
No 165
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.03 E-value=3e+02 Score=26.75 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=46.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy3918 549 YATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKL 628 (668)
Q Consensus 549 ~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i 628 (668)
+...+....+.....+.|+.-+..++..+......+ .++.+..+.+.+=..-|.- ....+++++..|+..-..+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l--~ek~k~~e~l~DE~~~L~l----~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL--KEKNKANEILQDELQALQL----QLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 333444444555556666666666666555443333 2333333333332222221 3466889999999999999
Q ss_pred HHHHHHHHHhcc
Q psy3918 629 FEMAYKKMAAEK 640 (668)
Q Consensus 629 ~~r~~~~~~~~~ 640 (668)
.+|.+++++++-
T Consensus 178 v~Rwm~~k~~eA 189 (194)
T PF08614_consen 178 VERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 166
>PLN03168 chalcone synthase; Provisional
Probab=35.63 E-value=91 Score=34.07 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCceEEEecCc-cCcHHHHHHHHHHhCCCC
Q psy3918 294 KFESLVGD-LIKKTVNPCQKALQDADCKNSDIGEVLLVGGM-TRMPKVQSTVQEIFGKVP 351 (668)
Q Consensus 294 efe~l~~~-l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGs-sriP~V~~~l~~~Fg~~~ 351 (668)
+-.+++.. -.+=..+.++++|+++++++++||.|+++-.+ -.+|.+--.|.+.+|-..
T Consensus 92 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 92 VRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 33333333 44445778899999999999999999986433 248999999999998654
No 167
>PRK10780 periplasmic chaperone; Provisional
Probab=35.34 E-value=3.9e+02 Score=25.19 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHH
Q psy3918 559 RVEALNQAESIVHDTESKMEEF---KAQLPAEECAKLKEQIAELQKLI 603 (668)
Q Consensus 559 ~~ea~N~lE~~i~~~~~~l~~~---~~~~~~~e~~~i~~~l~~~~~wl 603 (668)
.....++|+...-+++...++| ...++++++......|.....-+
T Consensus 52 ~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~ 99 (165)
T PRK10780 52 FKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTF 99 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555 46788888888887776655444
No 168
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.54 E-value=4.2e+02 Score=31.29 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.9
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecC
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIEN 84 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n 84 (668)
.+|++|.|.|.+-||.+.+|.|++...
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e 305 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSE 305 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeecc
Confidence 599999999999999999998877653
No 169
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=34.40 E-value=49 Score=36.18 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCceEEEEEEe---CCeeeE
Q psy3918 55 VKGQVIGIDLGTTNSCVAVME---GKQAKV 81 (668)
Q Consensus 55 ~~~~vvGIDlGTt~s~vA~~~---~~~~~i 81 (668)
..+.++.||||.||..||.+. +|++++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 467899999999999999885 344443
No 170
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=34.35 E-value=35 Score=36.62 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCCCCceEEEEEcCCceEEEEEEeCCe
Q psy3918 52 SDGVKGQVIGIDLGTTNSCVAVMEGKQ 78 (668)
Q Consensus 52 ~~~~~~~vvGIDlGTt~s~vA~~~~~~ 78 (668)
..+..+.++|||.|+|.+.+.++.++.
T Consensus 130 ~~~~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 130 REYQGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred hhhcCcEEEEEecCCcceeEEEEeCCC
Confidence 345667899999999999999998775
No 171
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.95 E-value=27 Score=31.77 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=15.0
Q ss_pred EEEEcCCceEEEEEEeC
Q psy3918 60 IGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 60 vGIDlGTt~s~vA~~~~ 76 (668)
+|||+|+..+++|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998754
No 172
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.13 E-value=1.2e+02 Score=27.55 Aligned_cols=22 Identities=9% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHH
Q psy3918 598 ELQKLIANK-DSVDPEELRKATT 619 (668)
Q Consensus 598 ~~~~wl~~~-~~~~~~~~~~~~~ 619 (668)
..++||+.+ ...|+++|+.+..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 456799875 6679999988754
No 173
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=32.81 E-value=3.1e+02 Score=23.25 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q psy3918 531 SGGLSKDEIENMVKNAEQ-YATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAE 598 (668)
Q Consensus 531 ~~~ls~~ei~~~~~~~~~-~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~ 598 (668)
.+..+++|++.+..-+.+ |...+....+..+..+....-..++...+..+...++.+++..+.+.+-.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356889999888877666 44444444444444444333333445555556666678888777666633
No 174
>KOG2517|consensus
Probab=32.52 E-value=97 Score=34.97 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=25.9
Q ss_pred CceEEEEEcCCceEEEEEEeCCeeeEecCCCCCccccEEEEEe
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFT 98 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~~~ii~n~~g~~~~PS~V~~~ 98 (668)
...++|||.|||.+.+++++...-+++ +....|....+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l----~~~~~~i~~~~~ 43 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELL----SLAQKEITQEFP 43 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccc----eeeeeeeeeecC
Confidence 457899999999999999974333333 233445555554
No 175
>PRK13326 pantothenate kinase; Reviewed
Probab=32.29 E-value=57 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.8
Q ss_pred CceEEEEEcCCceEEEEEEeCCe
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQ 78 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~ 78 (668)
-+.++.||.|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 35689999999999999998764
No 176
>KOG0103|consensus
Probab=32.20 E-value=1.4e+02 Score=34.57 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhcC--------CCCC---HHHHHHHHHHHHHHHHHHHH
Q psy3918 588 ECAKLKEQIAELQKLIANK--------DSVD---PEELRKATTTLQQASLKLFE 630 (668)
Q Consensus 588 e~~~i~~~l~~~~~wl~~~--------~~~~---~~~~~~~~~~L~~~~~~i~~ 630 (668)
+.++....+++.+.|++.. ..++ .++++++.++|.+.|.++..
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~ 724 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIIS 724 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccccc
Confidence 7778888899999999852 1122 38899999999999888764
No 177
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=32.14 E-value=64 Score=34.74 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCC--CC--CCCCCchhHHHhhHH
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGK--VP--SRAVNPDEAVAIGAA 366 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~--~~--~~~~npdeaVA~GAa 366 (668)
++|.|++.||.+..+.+.+.+.+.+.. ++ ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 579999999999999888999888742 21 223344667788864
No 178
>COG5293 Predicted ATPase [General function prediction only]
Probab=30.85 E-value=4.3e+02 Score=29.23 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=41.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3918 572 DTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAE 639 (668)
Q Consensus 572 ~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~~~~~~~ 639 (668)
..+..+++|.-.+ ++.-...-.|++++--.+. .-...++.++++.|+..|..+-+|+|....+.
T Consensus 373 k~~g~~e~y~~l~--ee~~~~~~elae~~~rie~--l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q 436 (591)
T COG5293 373 KNRGVFEKYQTLC--EEIIALRGELAELEYRIEP--LRKLHALDQYIGTLKHECLDLEERIYTEVQQQ 436 (591)
T ss_pred HhCCcHHHHHHHH--HHHHHHhhhHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445566655443 3344455556666554443 11467788999999999999999999876554
No 179
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.64 E-value=5.2e+02 Score=26.42 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=37.0
Q ss_pred CCCCceEEEecCccCcHH---HHHHHHHHhCCCCCCCCCchhHHHhhHHHhhhhhcCCCCce
Q psy3918 321 NSDIGEVLLVGGMTRMPK---VQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDV 379 (668)
Q Consensus 321 ~~~I~~ViLVGGssriP~---V~~~l~~~Fg~~~~~~~npdeaVA~GAai~aa~ls~~~~~~ 379 (668)
....++|+|.|--+-+.. |++.+.++.-.+. ..-|-++.+.|+|+.|.-.+..-+++
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~Gkr~I 325 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIASGKRSI 325 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHcCccce
Confidence 456789999886666665 7777766543222 23345568999999887665543443
No 180
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=30.60 E-value=1.1e+02 Score=31.84 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEE-ecCccCcHHHHHHHHHHhCCC
Q psy3918 306 TVNPCQKALQDADCKNSDIGEVLL-VGGMTRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~~I~~ViL-VGGssriP~V~~~l~~~Fg~~ 350 (668)
+...|+++|+++++++.+||.++. +..+.-.|.+-.+|.+.||-.
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 356788899999999999998776 556788999999999999854
No 181
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=30.56 E-value=2.1e+02 Score=22.98 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=36.0
Q ss_pred eEEEEEeCCCceEEEEeeecCCCceeEEE--EccCCCCCHHHHHHHHHHHHH
Q psy3918 499 IEVTFDIDANGIVHVSARDKGTGKEQQIV--IQSSGGLSKDEIENMVKNAEQ 548 (668)
Q Consensus 499 i~v~f~id~~Gil~v~a~~~~t~~~~~~~--i~~~~~ls~~ei~~~~~~~~~ 548 (668)
....+.++.+|.++|...+..+|...-.+ |....-.|..+|.+++.+++.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVELTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEEEEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 57788899999999999999999874322 122234677788777776543
No 182
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=30.31 E-value=36 Score=39.85 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred ccCCCCCceEEEEEcCCceEEEEEEe
Q psy3918 50 YKSDGVKGQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 50 ~~~~~~~~~vvGIDlGTt~s~vA~~~ 75 (668)
..|+...+.++|||+|.|++.+|+++
T Consensus 11 ~~~~~~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 11 EASQHADGPRLLADVGGTNARFALET 36 (638)
T ss_pred hhccCCCCCEEEEEcCchhheeeeec
Confidence 45666778899999999999999985
No 183
>PRK09557 fructokinase; Reviewed
Probab=30.28 E-value=93 Score=32.39 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCC-------C--CCCCCCchhHHHhhHHHhh
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGK-------V--PSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~-------~--~~~~~npdeaVA~GAai~a 369 (668)
+.+.|+|-||.++.+.+...+++.+.. . +..+.-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 457888888887776666556655421 1 1222334668899998754
No 184
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=30.14 E-value=1.3e+02 Score=32.24 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHh
Q psy3918 304 KKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF 347 (668)
Q Consensus 304 ~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~F 347 (668)
+-+.+.+.++++.. .+..++++||-+.-.++|++|++..
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33444445555443 4678999999999999999999987
No 185
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=29.73 E-value=57 Score=28.88 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceEEEecCccCc--HHHHHHHHHHhCC
Q psy3918 304 KKTVNPCQKALQDADCKNSDIGEVLLVGGMTRM--PKVQSTVQEIFGK 349 (668)
Q Consensus 304 ~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssri--P~V~~~l~~~Fg~ 349 (668)
......++++|+++++++++|+.|..-|-++.. +.=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 445677999999999999999999999877764 3444567788864
No 186
>PLN02854 3-ketoacyl-CoA synthase
Probab=29.48 E-value=1.1e+02 Score=34.75 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=43.0
Q ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEE-ecCccCcHHHHHHHHHHhCCC
Q psy3918 287 NLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLL-VGGMTRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 287 ~~~iTr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViL-VGGssriP~V~~~l~~~Fg~~ 350 (668)
++.-.|+|.+.+ +...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|..
T Consensus 180 ~~~~~r~ea~~v-------~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 180 CMEEARAEAEAV-------MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 344455555554 446677889999999999999987 444445899999999999854
No 187
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=28 Score=40.23 Aligned_cols=42 Identities=79% Similarity=1.095 Sum_probs=37.7
Q ss_pred cCCccceeeeeccccccccccccceeEEeeecCcccCCCCCc
Q psy3918 419 AGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQ 460 (668)
Q Consensus 419 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~~~~n~~~p~~~~q 460 (668)
.++..+++++|+.|+++|++..++.+..++++|+++|....+
T Consensus 359 ~~~~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~ 400 (579)
T COG0443 359 SGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQ 400 (579)
T ss_pred cCcccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccce
Confidence 344558999999999999999999999999999999998876
No 188
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=28.97 E-value=92 Score=32.45 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=29.4
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCC-------C--CCCCCCchhHHHhhHHHhh
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGK-------V--PSRAVNPDEAVAIGAAVQG 369 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~-------~--~~~~~npdeaVA~GAai~a 369 (668)
+.+.|+|-||.+..|.+.+.|++.+.. . +..+.-.+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 457888877777666666666655521 1 1223345678899999765
No 189
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=28.82 E-value=90 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=25.6
Q ss_pred cEEEeeCCCCCHHHHHHHHHHHHHcCCC
Q psy3918 193 NAVITVPAYFNDSQRQATKDAGQIAGLN 220 (668)
Q Consensus 193 ~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 220 (668)
.-.++.|+.++..||+.+...|...||.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5567789999999999999999999998
No 190
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=28.72 E-value=2.1e+02 Score=29.52 Aligned_cols=48 Identities=23% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCC-------CCCCCCchhHHHhhHHHhhh
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKV-------PSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~-------~~~~~npdeaVA~GAai~aa 370 (668)
+.+.|+|-|+.+..+.+.+.+++.+... +..+...+.+.++|||.++-
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 4578888888776666666666655321 11223346788999998753
No 191
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.72 E-value=89 Score=33.75 Aligned_cols=49 Identities=10% Similarity=0.170 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCC
Q psy3918 299 VGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGK 349 (668)
Q Consensus 299 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~ 349 (668)
++..++.+...++++|+++++++++|+.+++-+++.++-- ..+++.||.
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg~ 314 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLGR 314 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhccC
Confidence 4455667778999999999999999999999999987432 234444653
No 192
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=28.64 E-value=1.5e+02 Score=33.77 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHh---CCCCCCC---CCchhHHHhhHHHhhhhhcC
Q psy3918 306 TVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF---GKVPSRA---VNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~F---g~~~~~~---~npdeaVA~GAai~aa~ls~ 374 (668)
+.+.++++++.. .++.|+|.||...-.++++.|.+.+ +.++..+ +-.|.++++|+|.+....++
T Consensus 233 l~~~~~~~~~~~-----g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 233 LTEVTERALAHT-----GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 334444444433 3578999999999999999999665 3333222 24588999998876544443
No 193
>KOG0680|consensus
Probab=28.47 E-value=74 Score=33.44 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.5
Q ss_pred eEEEEEcCCceEEEEEEeCCeeeEecC
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQAKVIEN 84 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~~~ii~n 84 (668)
..|-+|=|.-+..++...+..|.+++|
T Consensus 4 ~tiVlDNGay~~KiG~s~~~~p~~vpN 30 (400)
T KOG0680|consen 4 TTIVLDNGAYNIKIGPSTNKKPFVVPN 30 (400)
T ss_pred ceEEEcCCceeEEeccCCCCCceeccc
Confidence 578899999999999998888888875
No 194
>PRK00292 glk glucokinase; Provisional
Probab=27.76 E-value=55 Score=34.47 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=16.8
Q ss_pred eEEEEEcCCceEEEEEEe
Q psy3918 58 QVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~ 75 (668)
.++|||+|.|++.+++++
T Consensus 3 ~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 3 PALVGDIGGTNARFALCD 20 (316)
T ss_pred eEEEEEcCccceEEEEEe
Confidence 589999999999999997
No 195
>PLN02362 hexokinase
Probab=27.74 E-value=80 Score=35.76 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.3
Q ss_pred CCCceEEEEEcCCceEEEEEEe
Q psy3918 54 GVKGQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 54 ~~~~~vvGIDlGTt~s~vA~~~ 75 (668)
...+..++||||.||..|+.+.
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 92 SEIGTYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred CcceeEEEEecCCceEEEEEEE
Confidence 3467899999999999999885
No 196
>PRK10869 recombination and repair protein; Provisional
Probab=27.52 E-value=7.6e+02 Score=28.37 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy3918 585 PAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQAS 625 (668)
Q Consensus 585 ~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~ 625 (668)
+.++.-...+.+.+-.++|++.+ ...++++++++++++..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e-~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQE-DDLETLALAVEKHHQQA 357 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHH
Confidence 34444444445555555555421 13455555555544443
No 197
>PRK08868 flagellar protein FlaG; Provisional
Probab=27.23 E-value=1.4e+02 Score=27.67 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=34.6
Q ss_pred eEEEEEeCCC-ceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHH
Q psy3918 499 IEVTFDIDAN-GIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQY 549 (668)
Q Consensus 499 i~v~f~id~~-Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~ 549 (668)
..+.|++|.+ |.+.|+..|..||... ..+++|++-++.+++.++
T Consensus 89 ~~L~F~vdeetgr~VVkViD~~T~EVI-------RQIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 89 KGLSFRVDEESGRDVVTIYEASTGDII-------RQIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred CceEEEEecCCCCEEEEEEECCCCcee-------eeCCCHHHHHHHHHHHHh
Confidence 5789999876 8889999999988753 347888888887776654
No 198
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=1.7e+02 Score=31.20 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=0.0
Q ss_pred eHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCceEEEecCccCcHHHHHHHHHHhCCC--CCCCCCchhHHHhhHHH
Q psy3918 291 TRSKFESLVGD-LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKV--PSRAVNPDEAVAIGAAV 367 (668)
Q Consensus 291 Tr~efe~l~~~-l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGssriP~V~~~l~~~Fg~~--~~~~~npdeaVA~GAai 367 (668)
+++++---++. .++-+.+.++++++..+. +.++++||-+.-..+|+++++..... ......++.|.--||-|
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMI 307 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMI 307 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHH
Q ss_pred hhh
Q psy3918 368 QGG 370 (668)
Q Consensus 368 ~aa 370 (668)
-.+
T Consensus 308 A~a 310 (342)
T COG0533 308 AYA 310 (342)
T ss_pred HHH
No 199
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=27.03 E-value=36 Score=38.15 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=15.0
Q ss_pred EEEEcCCceEEEEEEe
Q psy3918 60 IGIDLGTTNSCVAVME 75 (668)
Q Consensus 60 vGIDlGTt~s~vA~~~ 75 (668)
||||+|||++.+++++
T Consensus 1 lgIDiGtt~ik~~l~d 16 (481)
T TIGR01312 1 LGIDLGTSGVKALLVD 16 (481)
T ss_pred CceeecCcceEEEEEC
Confidence 6999999999999996
No 200
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.84 E-value=3e+02 Score=25.14 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHccCCHHH
Q psy3918 569 IVHDTESKMEEFKAQLPAEE 588 (668)
Q Consensus 569 ~i~~~~~~l~~~~~~~~~~e 588 (668)
.++++-..++.+...+|+++
T Consensus 102 lL~~~v~~ie~LN~~LP~~~ 121 (131)
T PF10158_consen 102 LLNQTVPSIETLNEILPEEE 121 (131)
T ss_pred HHHHHHHHHHHHHhhCChhh
Confidence 33333333333444444443
No 201
>KOG1794|consensus
Probab=26.81 E-value=1.6e+02 Score=30.71 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=31.3
Q ss_pred ceEEEecCccCc-HHHHHHHHHHh----CCCCCCCCCchhHHHhhHHHhhhhhcC
Q psy3918 325 GEVLLVGGMTRM-PKVQSTVQEIF----GKVPSRAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 325 ~~ViLVGGssri-P~V~~~l~~~F----g~~~~~~~npdeaVA~GAai~aa~ls~ 374 (668)
=.|++|||.-.+ ..+++-....+ +-+....+.|.++-|.|||++|+.+.+
T Consensus 265 l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 265 LPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred ceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 478999996543 22332222111 122345677899999999999997643
No 202
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=26.47 E-value=1e+02 Score=32.27 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCceEEEecCccCc-HHHHHHHHHHhCC----------CCCCCCCchhHHHhhHHHhhh
Q psy3918 323 DIGEVLLVGGMTRM-PKVQSTVQEIFGK----------VPSRAVNPDEAVAIGAAVQGG 370 (668)
Q Consensus 323 ~I~~ViLVGGssri-P~V~~~l~~~Fg~----------~~~~~~npdeaVA~GAai~aa 370 (668)
+.+.|+|-|+.+.. +.+.+.+++.+.. ++..+.-.+.++++|||..+.
T Consensus 251 dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 251 NPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred CCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 45778888776653 5666666655421 112233346688999998753
No 203
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=26.27 E-value=4e+02 Score=24.95 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy3918 538 EIENMVKNAEQY 549 (668)
Q Consensus 538 ei~~~~~~~~~~ 549 (668)
+|+.+......+
T Consensus 29 ~Insl~~~v~~l 40 (160)
T PF03978_consen 29 EINSLIEDVSKL 40 (160)
T ss_pred HHHHHHHHHHHh
Confidence 344444433333
No 204
>KOG3758|consensus
Probab=25.91 E-value=7.2e+02 Score=28.71 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccCC-----HHHHHHHHHHHHHHHHHHhcCC
Q psy3918 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTES-KMEEFKAQLP-----AEECAKLKEQIAELQKLIANKD 607 (668)
Q Consensus 534 ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~-~l~~~~~~~~-----~~e~~~i~~~l~~~~~wl~~~~ 607 (668)
.++.+.....+.+..+.++. ..+.+...++.+|+..-.+.. .|++|.+... .+++.++...++.+..-+.+.
T Consensus 27 ~~dkd~~~aL~~ls~~~~eN-~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~- 104 (655)
T KOG3758|consen 27 YSDKDALAALRALSTFFEEN-SLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTS- 104 (655)
T ss_pred cCcHHHHHHHHHHHHHHHhh-hHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 45555555556555555443 334567788888887765544 4455543222 267778888888777766653
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy3918 608 SVDPEELRKATTTLQQASLKLFEM 631 (668)
Q Consensus 608 ~~~~~~~~~~~~~L~~~~~~i~~r 631 (668)
.++..++-++.+.|+.....+-.|
T Consensus 105 k~~t~dli~~t~~l~~e~~~le~r 128 (655)
T KOG3758|consen 105 KATTQDLIQKTETLKEEAAQLELR 128 (655)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777666555444
No 205
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=25.17 E-value=34 Score=38.13 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.7
Q ss_pred EEEEcCCceEEEEEEe
Q psy3918 60 IGIDLGTTNSCVAVME 75 (668)
Q Consensus 60 vGIDlGTt~s~vA~~~ 75 (668)
+|||+|||++++++++
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999986
No 206
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=25.05 E-value=1.2e+02 Score=29.96 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEeeCCCCCHHHHHHHHHHHHHcCCC---------CCeEEEEecc---CCCcccccc
Q psy3918 173 AFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------KGVFEVKSTN---GDTLLGGEG 239 (668)
Q Consensus 173 a~iL~~lk~~ae~~l~~~~~~~VITVPa~f~~~qR~a~~~Aa~~AGl~---------~g~~~V~~~~---gd~~lGG~~ 239 (668)
..++..|++..+.........-++.+|..|++..=-.+...|+..||. ...|.|...+ |-..|||-+
T Consensus 56 ~~l~~~l~~~~~~~~~~~~~~r~~~iPV~Y~~~~g~DL~~vA~~~gLs~eevi~~Hs~~~y~V~~iGF~PGf~YL~~ld 134 (202)
T TIGR00370 56 KHLPQRLSSPWEEVKDYEVNRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLP 134 (202)
T ss_pred HHHHHHHHHHHhhccccCCCCeEEEEeeEeCCCCCCCHHHHHHHhCcCHHHHHHHHhCCceEEEEEcCCCCchhccCCc
Confidence 334445544332222223334478999999976545678889999998 6677776654 667788753
No 207
>PRK07738 flagellar protein FlaG; Provisional
Probab=24.90 E-value=1.7e+02 Score=26.20 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=34.1
Q ss_pred eEEEEEeCCC-ceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHHHH
Q psy3918 499 IEVTFDIDAN-GIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQY 549 (668)
Q Consensus 499 i~v~f~id~~-Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~ 549 (668)
..+.|++|.+ |.+.|...|..||+-. ..++++++-++..++.++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVI-------RQIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVI-------REIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeee-------eeCCCHHHHHHHHHHHHH
Confidence 4789999875 8999999999888643 246888888887766654
No 208
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.85 E-value=6.2e+02 Score=24.20 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=28.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy3918 576 KMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQA 624 (668)
Q Consensus 576 ~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~ 624 (668)
.|.+|....|+.++.+++..+-.+..=-..+. .+..+++-++.|+.+
T Consensus 133 Alt~~l~~~P~aDrq~LR~LvRna~kE~a~NK--PPks~ReifQ~lk~l 179 (187)
T COG3028 133 ALTEFLNQYPDADRQQLRTLIRNAKKEQAQNK--PPKSFREIFQYLKEL 179 (187)
T ss_pred HHHHHHHHCCcccHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence 34457777777888888777766665544332 345566655555544
No 209
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=24.74 E-value=1.7e+02 Score=26.19 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=31.3
Q ss_pred eEEEEEeCC-CceEEEEeeecCCCceeEEEEccCCCCCHHHHHHHHHHHH
Q psy3918 499 IEVTFDIDA-NGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAE 547 (668)
Q Consensus 499 i~v~f~id~-~Gil~v~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~ 547 (668)
-.+.|++|. -|.+.|+..|..||+.. ..++++++-++.+.+.
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVI-------RqIPpee~L~l~~r~~ 109 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVI-------RQIPPEEALELAARMR 109 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcch-------hhCChHHHHHHHHHHH
Confidence 468899964 58899999999998753 3567887766655544
No 210
>KOG2002|consensus
Probab=24.67 E-value=4.7e+02 Score=31.80 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=15.1
Q ss_pred CCCCchhHHHhhHHHhhhhhcC
Q psy3918 353 RAVNPDEAVAIGAAVQGGVLAG 374 (668)
Q Consensus 353 ~~~npdeaVA~GAai~aa~ls~ 374 (668)
+..|+--.|++|-.+.++...+
T Consensus 596 ~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 596 TKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred cCCchhHHHHhhHHHHHHhccc
Confidence 3456777889998777665544
No 211
>PRK13320 pantothenate kinase; Reviewed
Probab=24.52 E-value=82 Score=31.98 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=18.6
Q ss_pred eEEEEEcCCceEEEEEEeCCe
Q psy3918 58 QVIGIDLGTTNSCVAVMEGKQ 78 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~~~ 78 (668)
.++.||.|+|++..+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 489999999999999998654
No 212
>KOG0104|consensus
Probab=24.18 E-value=8.1e+02 Score=29.14 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 583 QLPAEECAKLKEQIAELQKLIAN------------KDSVDPEELRKATTTLQQASLKLFEMAY 633 (668)
Q Consensus 583 ~~~~~e~~~i~~~l~~~~~wl~~------------~~~~~~~~~~~~~~~L~~~~~~i~~r~~ 633 (668)
.++..++..|.+.+.++..|+.. +...+.+++.++.+.|+.....+..++.
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k 836 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLK 836 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhh
Confidence 46778889999999999999963 2234568888999999888887777654
No 213
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.73 E-value=1.5e+02 Score=30.13 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCceEEEecCccCcHHHHHHHHHHhCCCCCCCCCchhHHHhhHH
Q psy3918 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAA 366 (668)
Q Consensus 323 ~I~~ViLVGGssriP~V~~~l~~~Fg~~~~~~~npdeaVA~GAa 366 (668)
.++.|+ =|.|..|++.+.+++.||..+ .-+||.+++|.=+.
T Consensus 172 ~~d~lI--LGCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVV--LGCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEE--ECcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 456654 499999999999999997653 56899888887553
No 214
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=23.59 E-value=2.3e+02 Score=28.25 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEecCccC--cHHHHHHHHHHhCCC
Q psy3918 306 TVNPCQKALQDADCKNSDIGEVLLVGGMTR--MPKVQSTVQEIFGKV 350 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~~I~~ViLVGGssr--iP~V~~~l~~~Fg~~ 350 (668)
....++++|+++++++++|+.|++.....- .|.+-..+...+|..
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~ 57 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS 57 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC
Confidence 456788899999999999999987655433 588888899999863
No 215
>PLN02192 3-ketoacyl-CoA synthase
Probab=23.58 E-value=1.6e+02 Score=33.38 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCceEEEecC-ccCcHHHHHHHHHHhCCC
Q psy3918 300 GDLIKKTVNPCQKALQDADCKNSDIGEVLLVGG-MTRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 300 ~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGG-ssriP~V~~~l~~~Fg~~ 350 (668)
++-..-+...++++|+++|+++++||.|+.... ..-.|.+-.+|.+.+|..
T Consensus 174 ~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 174 KEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 333344567888899999999999998876532 234899999999999854
No 216
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=23.54 E-value=90 Score=33.20 Aligned_cols=19 Identities=37% Similarity=0.664 Sum_probs=16.7
Q ss_pred ceEEEEEcCCceEEEEEEe
Q psy3918 57 GQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~ 75 (668)
..++|||+|++..+++...
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~ 21 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLK 21 (348)
T ss_pred CcEEEEEeccCeEEEEEEE
Confidence 4689999999999988775
No 217
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.50 E-value=7.8e+02 Score=24.87 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH------HHHHHHHHHHHHhcCCCCCHHH
Q psy3918 540 ENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAK------LKEQIAELQKLIANKDSVDPEE 613 (668)
Q Consensus 540 ~~~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~------i~~~l~~~~~wl~~~~~~~~~~ 613 (668)
+....-..++..-.++........+.++.++-+.+..+.+....+..-+... +..+++.++.++..+-....++
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~e 128 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEE 128 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q ss_pred HHHHHHHHHHHHHH
Q psy3918 614 LRKATTTLQQASLK 627 (668)
Q Consensus 614 ~~~~~~~L~~~~~~ 627 (668)
-..++..|+.....
T Consensus 129 R~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 129 RQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHhhhc
No 218
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=23.38 E-value=5.4e+02 Score=27.53 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy3918 582 AQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQAS 625 (668)
Q Consensus 582 ~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~ 625 (668)
..++.+||.++=+.++++.+-++. .+.++.++|++..
T Consensus 47 ~~l~~eer~~~G~~~n~~k~~~~~-------~~~~~~~~l~~~~ 83 (339)
T PRK00488 47 GKLPPEERKEAGALINELKQAIEA-------ALEERKEELEAAA 83 (339)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 456889999999999988887763 3556666665553
No 219
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=23.37 E-value=1.5e+02 Score=32.36 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEecCc----cCcHHHHHHHHHHhCCC
Q psy3918 306 TVNPCQKALQDADCKNSDIGEVLLVGGM----TRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 306 i~~~i~~~L~~a~~~~~~I~~ViLVGGs----sriP~V~~~l~~~Fg~~ 350 (668)
..+.++++|+++++++.+||.+++ |.. .-.+.+...+.+.+|..
T Consensus 33 ~~~A~~~Al~dagl~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~~ 80 (392)
T PRK06065 33 AWEAASKALDEAGLELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGGI 80 (392)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE-eccCCcccccccHHHHHHHHcCCC
Confidence 456788999999999999999986 321 12455777777777643
No 220
>PLN02405 hexokinase
Probab=22.84 E-value=90 Score=35.25 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.3
Q ss_pred CCCceEEEEEcCCceEEEEEEe
Q psy3918 54 GVKGQVIGIDLGTTNSCVAVME 75 (668)
Q Consensus 54 ~~~~~vvGIDlGTt~s~vA~~~ 75 (668)
...+..++||||.||..|+.+.
T Consensus 92 ~E~G~flAlDlGGTNfRV~~V~ 113 (497)
T PLN02405 92 DEKGLFYALDLGGTNFRVLRVL 113 (497)
T ss_pred CcceeEEEEecCCceEEEEEEE
Confidence 4477899999999999999885
No 221
>PRK13331 pantothenate kinase; Reviewed
Probab=22.34 E-value=1.1e+02 Score=31.38 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=19.6
Q ss_pred CceEEEEEcCCceEEEEEEeCCe
Q psy3918 56 KGQVIGIDLGTTNSCVAVMEGKQ 78 (668)
Q Consensus 56 ~~~vvGIDlGTt~s~vA~~~~~~ 78 (668)
...++.||.|+|++.++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECCE
Confidence 34589999999999999998654
No 222
>PRK06840 hypothetical protein; Validated
Probab=22.32 E-value=1.3e+02 Score=31.83 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceEEEecCcc---CcHHHHHHHHHHhCCC
Q psy3918 303 IKKTVNPCQKALQDADCKNSDIGEVLLVGGMT---RMPKVQSTVQEIFGKV 350 (668)
Q Consensus 303 ~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGss---riP~V~~~l~~~Fg~~ 350 (668)
.+=..+.++++|+++++++++||.++.++-.+ ..|..-..|...+|..
T Consensus 54 ~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl~ 104 (339)
T PRK06840 54 SDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAK 104 (339)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCCC
Confidence 34455788899999999999999998765322 3666667788888754
No 223
>PLN03171 chalcone synthase-like protein; Provisional
Probab=22.18 E-value=3.3e+02 Score=29.78 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCceEEEecCc-cCcHHHHHHHHHHhCCCC
Q psy3918 301 DLIKKTVNPCQKALQDADCKNSDIGEVLLVGGM-TRMPKVQSTVQEIFGKVP 351 (668)
Q Consensus 301 ~l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGs-sriP~V~~~l~~~Fg~~~ 351 (668)
...+=..+..+++|+++++++++||.|+++-.+ -.+|..--.|.+.+|...
T Consensus 107 ~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LGl~~ 158 (399)
T PLN03171 107 AVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLGLRP 158 (399)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhCCCc
Confidence 345556788999999999999999999983222 237999999999998653
No 224
>PLN02939 transferase, transferring glycosyl groups
Probab=21.83 E-value=6.4e+02 Score=31.05 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKME 578 (668)
Q Consensus 534 ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~lE~~i~~~~~~l~ 578 (668)
+-+++++.++.++...++-|+....++..+.-|++.+-+++.++-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999888888889999999888888773
No 225
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.62 E-value=2.7e+02 Score=29.43 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceEEEecCc--cCcHHHHHHHHHHhCCC
Q psy3918 303 IKKTVNPCQKALQDADCKNSDIGEVLLVGGM--TRMPKVQSTVQEIFGKV 350 (668)
Q Consensus 303 ~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGs--sriP~V~~~l~~~Fg~~ 350 (668)
.+-..+.++++|+++++.+++|+.|+....+ ...|.....+...+|..
T Consensus 62 ~~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl~ 111 (338)
T PRK09258 62 SDGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLP 111 (338)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcCCC
Confidence 3445677888999999999999998865432 34688888899999864
No 226
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.47 E-value=7.7e+02 Score=24.11 Aligned_cols=69 Identities=7% Similarity=0.058 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy3918 561 EALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLF 629 (668)
Q Consensus 561 ea~N~lE~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~ 629 (668)
.+.-++|.|--.++.-.++...+..+.=...|...++.++..|......+.+.+.+-++...+....+|
T Consensus 65 R~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~vL 133 (194)
T PRK14158 65 RERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTL 133 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 334445555545555444455555555556666677777776654322223444444444444433333
No 227
>COG4709 Predicted membrane protein [Function unknown]
Probab=21.20 E-value=4e+02 Score=25.91 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=33.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3918 582 AQLPAEECAKLKEQIAELQKLIANK--DSVDPEELRKATTTLQQASLKLFEMAYKKM 636 (668)
Q Consensus 582 ~~~~~~e~~~i~~~l~~~~~wl~~~--~~~~~~~~~~~~~~L~~~~~~i~~r~~~~~ 636 (668)
+.+|+++|. +.+.++++.+++. +.-+.+|+-..+..=++.+..+.++.--+.
T Consensus 15 ~~Lp~~~r~---e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~ 68 (195)
T COG4709 15 EGLPREERR---EIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKK 68 (195)
T ss_pred HhCCHHHHH---HHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchH
Confidence 456777664 4577888888774 344577887777777777766665543333
No 228
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=21.20 E-value=2.6e+02 Score=29.73 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCc--cCcHHHHHHHHHHhCCCCCC
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGM--TRMPKVQSTVQEIFGKVPSR 353 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGs--sriP~V~~~l~~~Fg~~~~~ 353 (668)
..+-.....+++|+++++++++||-|++.-=+ --+|..--.|++.+|.....
T Consensus 52 ~s~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~~~~ 105 (323)
T COG0332 52 TSDLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAP 105 (323)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhCCCCcc
Confidence 34446678899999999999999999987654 33699999999999876533
No 229
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=21.05 E-value=2.3e+02 Score=22.51 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=34.1
Q ss_pred hhHhhhhhCCCCCChHHHHhhccCceEEEEcCCCCeeEeC--CCCceeChhhHHHHHHH
Q psy3918 121 FYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQG--SDEKVYSPSQIGAFVLM 177 (668)
Q Consensus 121 i~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~~~~~i~~--~~~~~~~~~ev~a~iL~ 177 (668)
...+++++|..+....+...+.++.|.+....++...+.. -......+.+++-.+++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 3467899999998888999999999998875444333332 23344566666666554
No 230
>PRK12408 glucokinase; Provisional
Probab=20.88 E-value=78 Score=33.75 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.0
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
.++|||+|.|++.+|+++.
T Consensus 17 ~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cEEEEEcChhhhheeEEec
Confidence 4899999999999999963
No 231
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=20.68 E-value=74 Score=38.35 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=17.2
Q ss_pred eEEEEEcCCceEEEEEEeC
Q psy3918 58 QVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 58 ~vvGIDlGTt~s~vA~~~~ 76 (668)
++||+|+||+.++.|+++.
T Consensus 2 y~LGLDiGt~SvGWAVv~~ 20 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVED 20 (805)
T ss_pred ceeEEeecccceeEEEEec
Confidence 5899999999999999963
No 232
>KOG0243|consensus
Probab=20.31 E-value=1.3e+03 Score=28.60 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q psy3918 538 EIENMVKNAE 547 (668)
Q Consensus 538 ei~~~~~~~~ 547 (668)
||+++++.+.
T Consensus 412 EIerLK~dl~ 421 (1041)
T KOG0243|consen 412 EIERLKRDLA 421 (1041)
T ss_pred HHHHHHHHHH
Confidence 5666666653
No 233
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=20.20 E-value=5.7e+02 Score=28.10 Aligned_cols=43 Identities=12% Similarity=0.322 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEecCcc-CcHHHHHHHHHHh
Q psy3918 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMT-RMPKVQSTVQEIF 347 (668)
Q Consensus 302 l~~~i~~~i~~~L~~a~~~~~~I~~ViLVGGss-riP~V~~~l~~~F 347 (668)
++.++...|-......+ ..+|.|+++||.. ..+.|++.+.+.+
T Consensus 309 f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 309 YVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 44444444443333321 2489999999999 8999999999866
No 234
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=20.13 E-value=1.2e+02 Score=28.22 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.5
Q ss_pred ceEEEEEcCCceEEEEEEeC
Q psy3918 57 GQVIGIDLGTTNSCVAVMEG 76 (668)
Q Consensus 57 ~~vvGIDlGTt~s~vA~~~~ 76 (668)
+.|++||.|+-|.+.++.+.
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 36899999999999999874
Done!