RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3918
(668 letters)
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 926 bits (2397), Expect = 0.0
Identities = 363/674 (53%), Positives = 447/674 (66%), Gaps = 109/674 (16%)
Query: 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVT 115
G++IGIDLGTTNSCVAVMEG + KVIEN+EG+RTTPSVVAFTKDGERLVG PA+RQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT 60
Query: 116 NSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFV 175
N NT ++ KRL+GRR D E++KD+K + YKIV+A NGDAWV+ D K Y+P +I A +
Sbjct: 61 NPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVE-IDGKKYTPQEISAMI 117
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+K+ +E +L V AVITVPAYFND+QRQATKDAG+IAGL
Sbjct: 118 LQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 177
Query: 221 ----------------------------KGVFEVKSTNGDTLLGGE-------------- 238
GVFEV STNGDT LGG+
Sbjct: 178 GLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEF 237
Query: 239 ----GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSK 294
G+D+RKD+MA+QRLKEAAEKAKIELSS+ QT+INLP++T DA GPKH+ +KLTR+K
Sbjct: 238 KKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAK 297
Query: 295 FESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRA 354
FE L DL+++T+ PC++AL+DA SDI EV+LVGG TRMP VQ V+E FGK P++
Sbjct: 298 FEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKG 357
Query: 355 VNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQ 414
VNPDE VAIGAA+QGGVLAGDV DVLLLDVTPLSLGIETLGGV T+LI RNTTIPTKKSQ
Sbjct: 358 VNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQ 417
Query: 415 GGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPT-KKSQTQVEIKVHQGERE 473
VF+ T +Q V I V QGERE
Sbjct: 418 ----------------------------VFS----------TAADNQPAVTIHVLQGERE 439
Query: 474 MAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGG 533
MAADNK LG+F L GIPPAPRGVPQIEVTFDIDANGIVHVSA+DKGTGKEQ I I +S G
Sbjct: 440 MAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG 499
Query: 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
LS +EIE MVK+AE A EDK +++ VEA NQA+S+++ TE ++E ++PA+E K++
Sbjct: 500 LSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIE 559
Query: 594 EQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSGSSD 653
I EL++ + +D E ++ T L QAS KL E Y++ A + ++ D
Sbjct: 560 AAIKELKEALKGEDK---EAIKAKTEELTQASQKLGEAMYQQAQAA---QGAAGAAAKDD 613
Query: 654 QTQSQEEDKKKEDK 667
E ++ K+DK
Sbjct: 614 DVVDAEFEEVKDDK 627
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 786 bits (2031), Expect = 0.0
Identities = 338/641 (52%), Positives = 414/641 (64%), Gaps = 108/641 (16%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
VIGIDLGTTNSCVAVMEG +VI N EG+RTTPSVVAFT ERLVG A+RQAVTN
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSD-EKVYSPSQIGAFVLM 177
NT ++ KRLIGR+F DP +++D+K++ YK+V+ NGDA V+ + ++P QI A VL
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 178 KMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN----------------- 220
K+KET+EA+L V +AVITVPAYFND+QRQATKDAG+IAGLN
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 221 ---------------------------KGVFEVKSTNGDTLLGGE--------------- 238
GVFEV +TNGDT LGGE
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239
Query: 239 ---GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKF 295
G+D+ KD A+QRL+EAAEKAKIELSS+ QT+INLP++T A G K ++ LTR+KF
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSN-QTEINLPFITAMADG-KDVSGTLTRAKF 297
Query: 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAV 355
E L DL ++T+ P +KAL+DA S+I EV+LVGG TR+P VQ V+E FGK PS+ V
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGV 357
Query: 356 NPDEAVAIGAAVQGGVLAG--DVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS 413
NPDEAVAIGAAVQ GVL+G DV DVLLLDVTPLSLGIETLGGV T+LI RNTTIPTKKS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417
Query: 414 QGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGERE 473
Q N QT VEI+V+QGERE
Sbjct: 418 Q-----------------------------IFSTAADN--------QTAVEIQVYQGERE 440
Query: 474 MAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGG 533
MA DNKLLG F L GIPPAPRGVPQIEVTFDIDANGI+ VSA+DKGTGKEQ+I I +S G
Sbjct: 441 MAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG 500
Query: 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
LS DEIE MVK+AE+YA EDK +++R+EA N+AE V+ E ++E +LP + K++
Sbjct: 501 LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVE 560
Query: 594 EQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634
E I L++ + +D EE+ T LQ+ + E Y+
Sbjct: 561 EAIEWLKEELEGEDK---EEIEAKTEELQKVVQPIGERMYQ 598
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 777 bits (2009), Expect = 0.0
Identities = 337/638 (52%), Positives = 415/638 (65%), Gaps = 106/638 (16%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
+IGIDLGTTNSCVAVMEG + VI N+EG+RTTPSVVAFTK+GERLVG PA+RQAVTN
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMK 178
NT Y+ KR +GRRFD E+ ++ K + YK V GD V+ K Y+P +I A +L K
Sbjct: 62 NTIYSIKRFMGRRFD--EVTEEAKRVPYK-VVGDGGDVRVKVDG-KEYTPQEISAMILQK 117
Query: 179 MKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------------ 220
+K+ +EA+L V AVITVPAYFND+QRQATKDAG+IAGL
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 221 --------------------------KGVFEVKSTNGDTLLGG----------------- 237
GVFEV ST GDT LGG
Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237
Query: 238 -EGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFE 296
EG+D+ KD+MA+QRLKEAAEKAKIELSS + T+INLP++T DA GPKH+ + LTR+KFE
Sbjct: 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297
Query: 297 SLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVN 356
L DL+++T P ++AL+DA SDI EV+LVGG TR+P VQ V++ FGK P+++VN
Sbjct: 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVN 357
Query: 357 PDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGG 416
PDE VAIGAA+QGGVL GDV DVLLLDVTPLSLGIETLGGV T+LI RNTTIPTKKSQ
Sbjct: 358 PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQ-- 415
Query: 417 VLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAA 476
VF+ +Q V+I V QGER MAA
Sbjct: 416 --------------------------VFS---------TAADNQPAVDIHVLQGERPMAA 440
Query: 477 DNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSK 536
DNK LG+F L GIPPAPRGVPQIEVTFDIDANGI+HVSA+DKGTGKEQ I I +S GLS+
Sbjct: 441 DNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSGLSE 500
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQI 596
+EIE MVK AE A EDK +++ +EA N A+S+ + E ++E +LPAEE K+++ +
Sbjct: 501 EEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAV 560
Query: 597 AELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634
AEL++ + + D EE++ T LQQA KL E Y+
Sbjct: 561 AELKEALKGE---DVEEIKAKTEELQQALQKLAEAMYQ 595
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 762 bits (1968), Expect = 0.0
Identities = 358/668 (53%), Positives = 456/668 (68%), Gaps = 102/668 (15%)
Query: 51 KSDGVKGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPAR 110
+ G ++GIDLGTTNSCVA+MEG Q KVIENSEG RTTPSVVAFT+DG+RLVG A+
Sbjct: 35 RFAKATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAK 94
Query: 111 RQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQ 170
RQAVTN NT +ATKRLIGRR+D+ KK+ K L YKIVRASNGDAW++ +K YSPSQ
Sbjct: 95 RQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKK-YSPSQ 153
Query: 171 IGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------- 220
IGAFVL KMKET+E++L VK AVITVPAYFNDSQRQATKDAG+IAGL+
Sbjct: 154 IGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTA 213
Query: 221 ---------------------------------KGVFEVKSTNGDTLLGGE--------- 238
GVFEVK+TNG+T LGGE
Sbjct: 214 AALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNY 273
Query: 239 ---------GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLK 289
G+D++KD++A+QRL+EAAE AKIELSS QT+INLP++T D GPKH+ +K
Sbjct: 274 LIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIK 333
Query: 290 LTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGK 349
L+R+K E L DL+KKT+ PC+K ++DA K ++ +V+LVGGMTRMPKV TV++IFGK
Sbjct: 334 LSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGK 393
Query: 350 VPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIP 409
PS+ VNPDEAVA+GAA+Q GVL G++ D+LLLDVTPLSLGIETLGGVFTRLI RNTTIP
Sbjct: 394 EPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIP 453
Query: 410 TKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQ 469
TKKSQ A D +QTQV IKV Q
Sbjct: 454 TKKSQVFSTAAD-------------------------------------NQTQVGIKVFQ 476
Query: 470 GEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQ 529
GEREMAADNKLLGQF LVGIPPAPRGVPQIEVTFD+DANGI+++SA DK TGK+Q+I IQ
Sbjct: 477 GEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQ 536
Query: 530 SSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEEC 589
SSGGLS +EIE MVK AE+Y +D+ K++ V+A N+AE++++ E ++ + K ++ +
Sbjct: 537 SSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADK 596
Query: 590 AKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSS 649
+LK++I +L+ ++ S D + ++ T LQ+AS K+ + AYK+ ++ + S S++S
Sbjct: 597 DELKQKITKLRSTLS---SEDVDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNS 653
Query: 650 GSSDQTQS 657
S++
Sbjct: 654 EESEEKND 661
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 642 bits (1658), Expect = 0.0
Identities = 305/656 (46%), Positives = 402/656 (61%), Gaps = 104/656 (15%)
Query: 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTN 116
G+VIGIDLGTTNSCVAV+EG + VI NSEG RTTPS+V F K G+RLVG A+RQAVTN
Sbjct: 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTN 61
Query: 117 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVL 176
+ NT Y+ KR IGRR+DD E ++ + Y V+ + VQ + Y+P +I A +L
Sbjct: 62 AENTVYSIKRFIGRRWDDTEEER--SRVPYTCVKGRDDTVNVQIRG-RNYTPQEISAMIL 118
Query: 177 MKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------------- 220
K+K+ +EA+L V AVITVPAYF D+QRQATKDAG IAGL
Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178
Query: 221 ----------------------------KGVFEVKSTNGDTLLGG--------------- 237
GVFEVK+T G+ LGG
Sbjct: 179 LDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238
Query: 238 ---EGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSK 294
EG+D+ +D+MA+QRL+EAAEKAKIELSS + T INLP++T D GPKH+ ++LTR+K
Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298
Query: 295 FESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF-GKVPSR 353
FE L DL++ T+ P Q+AL+DA K DI V+LVGG TR+P VQ +Q+ F GK P R
Sbjct: 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDR 358
Query: 354 AVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS 413
+VNPDEAVA+GAA+Q GVL G+V D+LLLDVTPLSLGIETLG VFT++I RNTTIPT KS
Sbjct: 359 SVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418
Query: 414 QGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGERE 473
Q A D QT VEI V QGER
Sbjct: 419 QVFSTATD-------------------------------------GQTSVEIHVLQGERA 441
Query: 474 MAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGG 533
MA DNK LG+F L GIPPAPRGVPQIEV+F+ID NGI+ VSA+D+GTG+EQ I I ++GG
Sbjct: 442 MAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNTGG 501
Query: 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
LS +EIE M + AE+YA ED+ ++ +E NQA+S+++ ES ++E + E + +
Sbjct: 502 LSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAE 561
Query: 594 EQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSS 649
+++ +L+ + + ++ EEL++ QQA L + Y++ ++ + +S
Sbjct: 562 QKVEQLEAALTD-PNISLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSD 616
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 625 bits (1613), Expect = 0.0
Identities = 347/680 (51%), Positives = 448/680 (65%), Gaps = 102/680 (15%)
Query: 48 ARYKSDGVKGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGT 107
AR++S V+G VIG+DLGTT SCVA M+G +A+V+ENSEG RTTPSVVAF K E+LVG
Sbjct: 18 ARHESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAF-KGSEKLVGL 76
Query: 108 PARRQAVTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYS 167
A+RQA+TN +TFYA KRLIGRRF+D I+KD+KN+ YKIVRA NGDAWVQ + K YS
Sbjct: 77 AAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYS 136
Query: 168 PSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------- 220
PSQIGAFVL KMKET+E FL V NAV+T PAYFND+QRQATKDAG IAGLN
Sbjct: 137 PSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNE 196
Query: 221 ------------------------------------KGVFEVKSTNGDTLLGGE------ 238
GVFEVK+TNGDT LGGE
Sbjct: 197 PTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLAL 256
Query: 239 ------------GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHM 286
G+D+ K++MA+QR++EAAEKAK ELSS+++T++NLP++T +A G +H+
Sbjct: 257 SDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHI 316
Query: 287 NLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEI 346
+ ++RSKFE + LI++++ PC++ ++DA + +I +V+LVGGMTRMPKV V++
Sbjct: 317 QMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKF 376
Query: 347 FGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNT 406
F K P R VNPDEAVA+GAA GGVL GDV ++LLDVTPLSLGIETLGGVFTR+I +NT
Sbjct: 377 FQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNT 436
Query: 407 TIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIK 466
TIPTKKSQ A D +QTQV IK
Sbjct: 437 TIPTKKSQTFSTAAD-------------------------------------NQTQVGIK 459
Query: 467 VHQGEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQI 526
V QGEREMAADN+++GQF LVGIPPAPRGVPQIEVTFDIDANGI HV+A+DK TGK Q I
Sbjct: 460 VFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNI 519
Query: 527 VIQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPA 586
I ++GGLSK++IE M++++EQ+A D+VKR+ VE N AE+ + E ++ E+K A
Sbjct: 520 TITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEWKYVSDA 579
Query: 587 EECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGS 646
E+ +K +AEL+K + N + V ++L AT LQ+A ++ Y++ AA SS +
Sbjct: 580 EK-ENVKTLVAELRKAMENPN-VAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSN 637
Query: 647 SS-SGSSDQTQSQEEDKKKE 665
S Q Q Q+ ++K+
Sbjct: 638 SGEQQQQQQQQQQQNSEEKK 657
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 620 bits (1600), Expect = 0.0
Identities = 314/653 (48%), Positives = 403/653 (61%), Gaps = 107/653 (16%)
Query: 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTN 116
G+V+GIDLGTTNS VAVMEG + VI N+EG RTTPS+VA+TK G+ LVG A+RQAV N
Sbjct: 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVIN 61
Query: 117 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSD-EKVYSPSQIGAFV 175
NTFY+ KR IGR+F EI ++ K +SYK+ SNG+ ++ K +SP +I A V
Sbjct: 62 PENTFYSVKRFIGRKFS--EISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+ E + +L +V AVITVPAYFNDSQRQATKDAG+IAGL
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 221 ----------------------------KGVFEVKSTNGDTLLGG--------------- 237
GVFEV ST+GDT LGG
Sbjct: 180 GLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239
Query: 238 ---EGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSK 294
EG+D+ KD+ A+QRL EAAEKAKIELS+ QT+INLP++T GPKH+ LTR+K
Sbjct: 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAK 299
Query: 295 FESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRA 354
FE L DLI + P + AL+DA SDI EV+LVGG TR+P +Q V+++ GK P+++
Sbjct: 300 FEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQS 359
Query: 355 VNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQ 414
VNPDE VAIGAAVQ GVLAG+V D+LLLDVTPLSLG+ETLGGV T++I RNTTIPTKKS+
Sbjct: 360 VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSE 419
Query: 415 GGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREM 474
A D +QT VEI V QGERE+
Sbjct: 420 VFSTAVD-------------------------------------NQTNVEIHVLQGEREL 442
Query: 475 AADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGL 534
A DNK LG F L GIPPAPRGVPQIEVTFDIDANGI+ V+A+DKGTGKEQ I IQ + L
Sbjct: 443 AKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGASTL 502
Query: 535 SKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKE 594
KDE+E MVK AE+ A EDK KR++++ NQAES+ + E +++E K ++ E+ K++
Sbjct: 503 PKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIEN 562
Query: 595 QIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSS 647
I +L++ + N + E ++ LQ+A L E+ + ++ + S+
Sbjct: 563 LIKKLRQALQNDNY---ESIKSLLEELQKA---LMEIGKEVYSSTSTTDPASN 609
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 604 bits (1560), Expect = 0.0
Identities = 260/378 (68%), Positives = 289/378 (76%), Gaps = 62/378 (16%)
Query: 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVT 115
KG VIGIDLGTTNSCVAVMEGK KVIEN+EG+RTTPSVVAFTKDGERLVG PA+RQAVT
Sbjct: 1 KGAVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVT 60
Query: 116 NSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFV 175
N NT YATKRLIGRRFDDPE++KD+KN+ YKIV+ASNGDAWV+ + K YSPSQIGAFV
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVE-AHGKKYSPSQIGAFV 119
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
LMKMKET+EA+L VKNAVITVPAYFNDSQRQATKDAGQIAGLN
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 221 ----------------------------KGVFEVKSTNGDTLLGGE-------------- 238
KGVFEVKSTNGDT LGGE
Sbjct: 180 GLDKKDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEF 239
Query: 239 ----GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSK 294
G+D+ KD MA+QRL+EAAEKAKIELSSS+QTDINLPY+T DA GPKH+N+KLTR+K
Sbjct: 240 KKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAK 299
Query: 295 FESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRA 354
FESLVGDLIK+T+ PC+KAL+DA SDIGEV+LVGGMTRMPKVQ TV+EIFGK PS+
Sbjct: 300 FESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKG 359
Query: 355 VNPDEAVAIGAAVQGGVL 372
VNPDEAVAIGAA+QGGVL
Sbjct: 360 VNPDEAVAIGAAIQGGVL 377
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 601 bits (1552), Expect = 0.0
Identities = 283/652 (43%), Positives = 384/652 (58%), Gaps = 112/652 (17%)
Query: 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTN 116
G+++GIDLGTTNS VAVMEG + VI N+EG RTTPSVV FTKDGE LVG ARRQ V N
Sbjct: 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLN 61
Query: 117 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSD-EKVYSPSQIGAFV 175
NTFY KR IGRR+D E+ + K + Y I R G+ ++ E+ ++P ++ A +
Sbjct: 62 PQNTFYNLKRFIGRRYD--ELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI 119
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+ + + +L V AVITVPAYFNDSQRQAT+DAG+IAGL
Sbjct: 120 LRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAY 179
Query: 221 ----------------------------KGVFEVKSTNGDTLLGG--------------- 237
GVFEVK+T+GDT LGG
Sbjct: 180 GLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQF 239
Query: 238 ---EGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSK 294
EG+D+R+D+ A+QRL EAAEKAKIELS TDI+LP++T GPKH+ +L R +
Sbjct: 240 LEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQ 299
Query: 295 FESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRA 354
FESL GDL+ + + P ++AL+DA DI EV+LVGG TRMP VQ V+ + + P++
Sbjct: 300 FESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQN 359
Query: 355 VNPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQ 414
VNPDE VA+GAA+Q G+LAG++ D+LLLDVTPLSLG+ET+GGV +LI RNTTIP ++S
Sbjct: 360 VNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRS- 418
Query: 415 GGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREM 474
DV S + +Q+ VEI V QGEREM
Sbjct: 419 --------------DVFSTS----------------------ENNQSSVEIHVWQGEREM 442
Query: 475 AADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGL 534
A+DNK LG+F L GIPPAPRGVPQ++V FDIDANGI+ VSA D+ TG+EQ + IQ + L
Sbjct: 443 ASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGASTL 502
Query: 535 SKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKE 594
S+ E+ M++ AE A ED+ +R+R+E N+A +++ E ++ + + + +
Sbjct: 503 SEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRR 562
Query: 595 QI----AELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKES 642
+ ++Q + D EL A LQ+A L+ + +++ AE +
Sbjct: 563 AVESAMRDVQDSLEQD---DDRELDLAVADLQEA---LYGLN-REVRAEYKE 607
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 587 bits (1514), Expect = 0.0
Identities = 302/639 (47%), Positives = 380/639 (59%), Gaps = 128/639 (20%)
Query: 59 VIGIDLGTTNSCVAVMEGK-QAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNS 117
IGIDLGTTNS VAVM G KVIEN+EG R TPSVVAF+K+GE LVG A+RQAV N
Sbjct: 7 AIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNP 66
Query: 118 ANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLM 177
NT ++ KR IGR SNG D K Y+P +I A +L
Sbjct: 67 ENTIFSIKRKIGRG--------------------SNGLKISVEVDGKKYTPEEISAMILT 106
Query: 178 KMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN----------------- 220
K+KE +EA+L V +AVITVPAYFND+QRQATKDA +IAGLN
Sbjct: 107 KLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGL 166
Query: 221 --------------------------KGVFEVKSTNGDTLLGGE---------------- 238
GVFEV +T GD LGG+
Sbjct: 167 DKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKG 226
Query: 239 --GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFE 296
G+D+R D+ A+QRL+EAAEKAKIELSS+ QT INLP + D + +LTR+KFE
Sbjct: 227 KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFE 282
Query: 297 SLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVN 356
L+ DL+++T+ P ++AL+DA + SDI V+LVGG TR+P VQ V+E FGK P +++N
Sbjct: 283 ELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSIN 342
Query: 357 PDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGG 416
PDEAVA+GAA+Q VL+G+V DVLLLDV PLSLGIETLGGV T +I RNTTIP KKSQ
Sbjct: 343 PDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEF 402
Query: 417 VLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAA 476
A D QT V I V QGEREMAA
Sbjct: 403 STAADG-------------------------------------QTAVAIHVFQGEREMAA 425
Query: 477 DNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSK 536
DNK LG+F L GIPPAPRGVPQIEVTFDIDANGI++V+A+D GTGKEQ I I++S GLS
Sbjct: 426 DNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSGLSD 485
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQI 596
+EIE MV++AE A DK R+ VEA N+AES+++ E ++E + EE K++E I
Sbjct: 486 EEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVK-VSEEEKEKIEEAI 544
Query: 597 AELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKK 635
+L++ + + EE++ LQ+ + KL E Y++
Sbjct: 545 TDLEEALEG----EKEEIKAKIEELQEVTQKLAEKKYQQ 579
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 577 bits (1490), Expect = 0.0
Identities = 305/667 (45%), Positives = 401/667 (60%), Gaps = 105/667 (15%)
Query: 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNS 117
+V+GIDLGTTNS VA MEG + ++ N+EG RTTPSVVA+TK+G+RLVG A+RQAV N
Sbjct: 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 118 ANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSD-EKVYSPSQIGAFVL 176
NTF++ KR IGR+ E+ ++ K +SY++VR NG+ + K ++ +I A VL
Sbjct: 100 ENTFFSVKRFIGRKMS--EVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 157
Query: 177 MKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------------- 220
K+ + + FLN V AVITVPAYFNDSQR ATKDAG+IAGL
Sbjct: 158 RKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 217
Query: 221 ---------------------------KGVFEVKSTNGDTLLGG---------------- 237
GVFEV ST+GDT LGG
Sbjct: 218 FEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 277
Query: 238 --EGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKF 295
EG+D+ KD+ A+QRL EAAEKAKIELSS QT I+LP++T A GPKH++ LTR+KF
Sbjct: 278 KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKF 337
Query: 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAV 355
E L DL+ + P + AL+DA DI EV+LVGG TR+P VQ V+++ GK P+ V
Sbjct: 338 EELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTV 397
Query: 356 NPDEAVAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQG 415
NPDE VA+GAAVQ GVLAG+V+D++LLDVTPLSLG+ETLGGV T++I RNTT+PT KS+
Sbjct: 398 NPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEV 457
Query: 416 GVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMA 475
A D QT VEI V QGERE
Sbjct: 458 FSTAAD-------------------------------------GQTSVEINVLQGEREFV 480
Query: 476 ADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLS 535
DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTGK+Q I I + L
Sbjct: 481 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGASTLP 540
Query: 536 KDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQ 595
KDE+E MV+ AE++A EDK KRD V+ NQA+S+V+ TE +++E ++PA+ K++ +
Sbjct: 541 KDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAK 600
Query: 596 IAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKE-SSSGSSSSGSSDQ 654
+ EL+ IA+ + ++++ A L Q +++ + Y + A + G + SS
Sbjct: 601 LKELKDAIASGST---QKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSS 657
Query: 655 TQSQEED 661
+ + D
Sbjct: 658 SSGGDGD 664
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 496 bits (1280), Expect = e-172
Identities = 202/379 (53%), Positives = 252/379 (66%), Gaps = 65/379 (17%)
Query: 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVT 115
G++IGIDLGTTNSCVAVMEG + VI N+EGSRTTPSVVAFTK GERLVG PA+RQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVT 60
Query: 116 NSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQ-GSDEKVYSPSQIGAF 174
N NT ++ KR +GR+FD+ E ++ + YK+V G+ V+ S+ K Y+P +I A
Sbjct: 61 NPENTIFSIKRFMGRKFDEVEEERKV---PYKVVVDEGGNYKVEIDSNGKDYTPQEISAM 117
Query: 175 VLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN-------------- 220
+L K+KE +EA+L V AVITVPAYFNDSQRQATKDAG+IAGL
Sbjct: 118 ILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 177
Query: 221 -----------------------------KGVFEVKSTNGDTLLGG-------------- 237
GVFEV +TNGDT LGG
Sbjct: 178 YGLDKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE 237
Query: 238 ----EGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRS 293
EG+D+RKD+MA+QRLKEAAEKAKIELSS +T+INLP++T DA GPKH+ + LTR+
Sbjct: 238 FKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRA 297
Query: 294 KFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSR 353
KFE L DL+++T+ P ++AL+DA SDI EV+LVGG TR+P VQ V+E+FGK P++
Sbjct: 298 KFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNK 357
Query: 354 AVNPDEAVAIGAAVQGGVL 372
VNPDE VAIGAA+QGGVL
Sbjct: 358 GVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 507 bits (1306), Expect = e-172
Identities = 269/633 (42%), Positives = 358/633 (56%), Gaps = 117/633 (18%)
Query: 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVT 115
KG IGIDLGTT SCV V + + ++I N +G+RTTPS VAFT D ERL+G A+ Q
Sbjct: 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAR 61
Query: 116 NSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGS---DEKVYSPSQIG 172
N NT + KRLIGR+FDD ++ DMK+ +K+ + ++ + ++K + P +I
Sbjct: 62 NPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEIS 121
Query: 173 AFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------ 220
+ VL KMKE +EA+L VK+AV+TVPAYFNDSQRQATKDAG IAGLN
Sbjct: 122 SMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 181
Query: 221 ---------------------------------KGVFEVKSTNGDTLLGGE--------- 238
G+FEVK+T GDT LGGE
Sbjct: 182 IAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241
Query: 239 ----------GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNL 288
G D+ +Q A++RL+ E+AK LSSS Q I + L N+
Sbjct: 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NV 297
Query: 289 KLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF- 347
++R++FE L GD + T+ P +K L+DA + EV+LVGG TR+PKVQS +++ F
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 348 GKVPSRAVNPDEAVAIGAAVQGGVLAGD----VTDVLLLDVTPLSLGIETLGGVFTRLIT 403
GK P +++NPDEAVA GAAVQ +L G+ V D+LLLDVTPLSLG+ET GGV T+LI
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 404 RNTTIPTKKSQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQV 463
RNTTIPTKKSQ +FT +Q V
Sbjct: 418 RNTTIPTKKSQ----------------------------IFT---------TYADNQPGV 440
Query: 464 EIKVHQGEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKE 523
I+V +GER M DN LLG+F L GIPPAPRGVPQIEVTFDIDANGI++VSA DK TGK
Sbjct: 441 LIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKS 500
Query: 524 QQIVIQSSGG-LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEE--F 580
+I I + G LSK +I+ MV AE+Y ED+ R+RVEA N E+ + ++ +++
Sbjct: 501 NKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKV 560
Query: 581 KAQLPAEECAKLKEQIAELQKLIANKDSVDPEE 613
K +L + A +++ I E + + + EE
Sbjct: 561 KGKLSDSDKATIEKAIDEALEWLEKNQLAEKEE 593
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 445 bits (1148), Expect = e-149
Identities = 216/629 (34%), Positives = 322/629 (51%), Gaps = 121/629 (19%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
+GIDLGTTNS VA + QA+V+ + +G PSVV + +DG VG AR A + N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 120 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGD---AWVQGSDEKVYSPSQIGAFVL 176
T + KR +GR D I++ +L Y+ V + NG QG + SP ++ A +L
Sbjct: 81 TISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQG----LKSPVEVSAEIL 134
Query: 177 MKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------------- 220
+++ +E L + AVITVPAYF+D+QRQATKDA ++AGLN
Sbjct: 135 KALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYG 194
Query: 221 ---------------------------KGVFEVKSTNGDTLLGGE--------------G 239
KGVFEV +T GD+ LGG+ G
Sbjct: 195 LDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254
Query: 240 LDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLV 299
L R D + L +AA AK LS + ++++ G ++TR +F +L+
Sbjct: 255 LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITREQFNALI 304
Query: 300 GDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDE 359
L+K+T+ C++AL+DA + ++ EV++VGG TR+P V+ V E FG+ P +++PD+
Sbjct: 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDK 364
Query: 360 AVAIGAAVQGGVLAGDVT--DVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGGV 417
VAIGAA+Q +LAG+ D+LLLDV PLSLG+ET+GG+ ++I RNTTIP ++Q
Sbjct: 365 VVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQ--- 421
Query: 418 LAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPT-KKSQTQVEIKVHQGEREMAA 476
FT T K QT + I V QGERE+ A
Sbjct: 422 -------------------------EFT----------TFKDGQTAMAIHVVQGERELVA 446
Query: 477 DNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSK 536
D + L +F L GIPP G +I VTF +DA+G++ V+A +K TG E I ++ S GL+
Sbjct: 447 DCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTD 506
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQI 596
DEI M+K++ +A ED R E +AE ++ ++ + L A E A + +
Sbjct: 507 DEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAM 566
Query: 597 AELQKLIANKDSVDPEELRKATTTLQQAS 625
A L+++ D + + A L +A+
Sbjct: 567 AALREVAQ---GDDADAIEAAIKALDKAT 592
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 422 bits (1086), Expect = e-143
Identities = 192/377 (50%), Positives = 245/377 (64%), Gaps = 68/377 (18%)
Query: 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNS 117
+IGIDLGTTNSCVAV++ +IEN+EG RTTPS+V+FTK G LVG A+RQ +
Sbjct: 3 TIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGI-LVGEAAKRQEALHP 61
Query: 118 ANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLM 177
NTF+ATKRLIGR+F D E+++ MK YKIV NGDAW+ ++ K YSPSQI +FVL
Sbjct: 62 ENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIY-TNGKKYSPSQIASFVLK 120
Query: 178 KMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN----------------- 220
K+K+T+EA+L V AVITVPAYFNDSQRQATKDAG +AGL
Sbjct: 121 KLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGI 180
Query: 221 ---------------------------KGVFEVKSTNGDTLLGGE--------------- 238
GVFEVK+TNGDT+LGGE
Sbjct: 181 DKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKEFK 240
Query: 239 ---GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKF 295
+D+ +++ A+QR+KEAAEKAKIELSSS ++ I LPYL GPKH+ + +TR +F
Sbjct: 241 RKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLD----GPKHLRITITRREF 296
Query: 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAV 355
E L + K+T+ PC++ L+DA + DI EV+LVGGMTRMP +Q+ VQEIFGK PS++V
Sbjct: 297 EQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSV 356
Query: 356 NPDEAVAIGAAVQGGVL 372
NPDEAVA+GAA+QG +L
Sbjct: 357 NPDEAVALGAAIQGSIL 373
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 426 bits (1098), Expect = e-142
Identities = 214/609 (35%), Positives = 310/609 (50%), Gaps = 106/609 (17%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
+GIDLGTTNS VA + +V+ ++EG PSVV + KDG VG A A +
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMK 178
NT + KRL+GR +D K L Y+ V ++ V +P ++ A +L K
Sbjct: 61 NTISSVKRLMGRSIEDI---KTFSILPYRFVDGPGEMVRLRTVQGTV-TPVEVSAEILKK 116
Query: 179 MKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------------ 220
+K+ +E L + AVITVPAYF+D+QRQATKDA ++AGLN
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 221 -------------------------KGVFEVKSTNGDTLLGG--------------EGLD 241
KGVFEV +T GD+ LGG G+
Sbjct: 177 KASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGIS 236
Query: 242 IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGD 301
+ + L +AA AK L+ + +++ D G KLTR +FE+L+
Sbjct: 237 ADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKG------KLTRDEFEALIQP 290
Query: 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAV 361
L++KT++ C++AL+DA +I V+LVGG TRMP V+ V E+FG+ P ++PD+ V
Sbjct: 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVV 350
Query: 362 AIGAAVQGGVLAGDVT--DVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGGVLA 419
A+GAA+Q +LAG+ D+LLLDVTPLSLGIET+GG+ ++I RNT IP ++Q
Sbjct: 351 ALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQ----- 405
Query: 420 GDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAADNK 479
FT K QT + I V QGERE+ D +
Sbjct: 406 -----------------------EFTTY---------KDGQTAMVIHVVQGERELVEDCR 433
Query: 480 LLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEI 539
L +F L GIPP G +I VTF +DA+G++ VSA+++ TG EQ I ++ S GLS +EI
Sbjct: 434 SLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEI 493
Query: 540 ENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAEL 599
E M+K++ ++A ED R E +AE I+ ++ + L +E A + + L
Sbjct: 494 ERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAMEAL 553
Query: 600 QKLIANKDS 608
QK + D+
Sbjct: 554 QKALQGDDA 562
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 366 bits (942), Expect = e-121
Identities = 182/380 (47%), Positives = 228/380 (60%), Gaps = 72/380 (18%)
Query: 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTN 116
G VIGIDLGTT SCV V + + ++I N +G+R TPS VAFT DGERL+G A+ QA +N
Sbjct: 1 GTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSN 59
Query: 117 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQ---GSDEKVYSPSQIGA 173
NT + KRLIGR+FDD E++KD+K L YK+V +G +++ ++K +SP +I A
Sbjct: 60 PENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVV-NKDGKPYIEVDVKGEKKTFSPEEISA 118
Query: 174 FVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------- 220
VL KMKE +EA+L VK+AV+TVPAYFND+QRQATKDAG IAGLN
Sbjct: 119 MVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAI 178
Query: 221 -------------------------------KGVFEVKSTNGDTLLGGE----------- 238
GVFEV +TNGDT LGGE
Sbjct: 179 AYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFI 238
Query: 239 -------GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLT 291
G DI KD+ A+Q+L+ EKAK LSS QT I + L D + + LT
Sbjct: 239 KLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESL-FDG---EDFSETLT 294
Query: 292 RSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF-GKV 350
R+KFE L DL KKT+ P +K L+DAD K SDI E++LVGG TR+PKVQ ++E F GK
Sbjct: 295 RAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKE 354
Query: 351 PSRAVNPDEAVAIGAAVQGG 370
PSR +NPDEAVA GAAVQ G
Sbjct: 355 PSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 356 bits (916), Expect = e-118
Identities = 160/375 (42%), Positives = 211/375 (56%), Gaps = 70/375 (18%)
Query: 60 IGIDLGTTNSCVAVM-EGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
IGIDLGTTNS VA + G + ++I N EGSRTTPSVV F DGE LVG A+RQA+ N
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMK 178
NT KRLIGR+FDDP ++ K + R + K YSP ++ A +L K
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVD--RGAPIIPVPVELGGKKYSPEEVSALILKK 118
Query: 179 MKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------------ 220
+KE +EA+L V AVITVPAYFND+QR+ATK+A +IAGLN
Sbjct: 119 LKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLD 178
Query: 221 ---------------------------KGVFEVKSTNGDTLLGGE--------------- 238
GVFEV +T GD LGG+
Sbjct: 179 KKDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFK 238
Query: 239 ---GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKF 295
G+D+R D A++RLKEAAEKAKI LSSS + I LP L G + ++LTR +F
Sbjct: 239 EKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTREEF 294
Query: 296 ESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAV 355
E L+ L+++T++ ++ L DA K DI VLLVGG +R+P V+ ++E+FGK P R++
Sbjct: 295 EELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSI 354
Query: 356 NPDEAVAIGAAVQGG 370
+PDEAVA+GAA+
Sbjct: 355 DPDEAVALGAAIYAA 369
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 340 bits (875), Expect = e-111
Identities = 161/383 (42%), Positives = 213/383 (55%), Gaps = 77/383 (20%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
IGIDLGTT SCV V + + ++I N +G+RTTPS VAFT D ERL+G A+ Q N N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTN 60
Query: 120 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGS---DEKVYSPSQIGAFVL 176
T + KRLIGR+F DP ++ DMK+ +K+V G + + K + P +I + VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNG-GGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 177 MKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------------- 220
KMKE +EA+L +V NAVITVPAYFNDSQRQATKDAG IAGLN
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 221 -----------------------------KGVFEVKSTNGDTLLGGE------------- 238
G+FEVK+T GDT LGGE
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 239 -----GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYL--TMDAGGPKHMNLKLT 291
DI ++ A++RL+ A E+AK LSSS Q I + L +D +T
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID------FYTSIT 293
Query: 292 RSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIF-GKV 350
R++FE L DL + T+ P +K L+DA S I +++LVGG TR+PKVQ +Q+ F GK
Sbjct: 294 RARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 353
Query: 351 PSRAVNPDEAVAIGAAVQGGVLA 373
++++NPDEAVA GAAVQ +L+
Sbjct: 354 LNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 260 bits (667), Expect = 1e-80
Identities = 134/384 (34%), Positives = 194/384 (50%), Gaps = 75/384 (19%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
V+GID G NS VAV V+ N +R TPS+V+F + +RL+G A+ QA++N
Sbjct: 2 VVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFG-EKQRLIGEAAKNQAISNFK 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQ---GSDEKVYSPSQIGAFV 175
NT KRLIGR+FDDPE++K++K L +K+V +G ++ +EKV+SP Q+ A +
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAML 120
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+KE +E L V + VI+VP+YF D+QR+A DA QIAGLN
Sbjct: 121 LTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY 180
Query: 221 ----------------------------------KGVFEVKSTNGDTLLGGE-------- 238
KG +V ST D LGG
Sbjct: 181 GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFE 240
Query: 239 ----------GLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNL 288
+D+ + A RL A EK K LS++ + +N+ L M+ K ++
Sbjct: 241 HFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECL-ME---DKDVSG 296
Query: 289 KLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFG 348
K+ R +FE L L+++ P +KAL +A DI V +VGG TR+P V+ + ++FG
Sbjct: 297 KIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVFG 356
Query: 349 KVPSRAVNPDEAVAIGAAVQGGVL 372
K S +N DEAVA G A+Q +L
Sbjct: 357 KELSTTLNADEAVARGCALQCAML 380
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 256 bits (657), Expect = 1e-79
Identities = 132/368 (35%), Positives = 182/368 (49%), Gaps = 72/368 (19%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
IGIDLGTTNS VA + + K++ + G PSVV + DG VG A + A+++
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDPK 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMK 178
NT + KRL+G+ +D IKK L I+ NG + + + +P ++ A +L
Sbjct: 61 NTISSVKRLMGKSIED--IKKSFPYLP--ILEGKNGGIILFHTQQGTVTPVEVSAEILKA 116
Query: 179 MKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------------ 220
+KE +E L +K AVITVPAYF+D+QRQATKDA ++AGLN
Sbjct: 117 LKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLD 176
Query: 221 -------------------------KGVFEVKSTNGDTLLGGE--------------GLD 241
KGVFEV +T GD+ LGG+ GL
Sbjct: 177 KKKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLK 236
Query: 242 IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGD 301
L A KAK LS + + ++ K +TR +FE L+
Sbjct: 237 SLISDEDQAELLLIARKAKEALSGAEEVEVRG-------QDFKC---TITREEFEKLIDP 286
Query: 302 LIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAV 361
L+KKT+N C++AL+DA DI V+LVGG TR+P VQ V + FG+ P +NPDE V
Sbjct: 287 LVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVV 346
Query: 362 AIGAAVQG 369
AIGAA+Q
Sbjct: 347 AIGAALQA 354
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 250 bits (642), Expect = 1e-77
Identities = 128/370 (34%), Positives = 182/370 (49%), Gaps = 90/370 (24%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
IGIDLGTTNS VAV + +A++I N+ G TPSVV+ +DGE LVG AR + +T+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 120 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMKM 179
T + KR +G + K R + + ++ + VL +
Sbjct: 61 TAASFKRFMG---------------TDKKYRLGK----------REFRAEELSSLVLRSL 95
Query: 180 KETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN------------------- 220
KE +EA+L V AVI+VPAYFND QR+ATK AG++AGL
Sbjct: 96 KEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHD 155
Query: 221 -------------------------KGVFEVKSTNGDTLLGGE--------------GLD 241
GV EV+++ GD LGGE GLD
Sbjct: 156 KDEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLD 215
Query: 242 IRKDQMA-MQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVG 300
K + + RL AAE+AK LS + ++++ + + LTR +FE +
Sbjct: 216 FEKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTREEFEEICQ 269
Query: 301 DLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEA 360
L+++ P ++AL+DA K SDI E++LVGG TRMP V+ V +FG+ P +NPDE
Sbjct: 270 PLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEV 329
Query: 361 VAIGAAVQGG 370
VA+GAA+Q G
Sbjct: 330 VALGAAIQAG 339
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 244 bits (624), Expect = 3e-72
Identities = 175/644 (27%), Positives = 281/644 (43%), Gaps = 141/644 (21%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
+GID GTTNS +A+ ++ KVI++ + P+ + FT + +
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-----------FTIGNN 69
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDE-------KVYSPSQI 171
+ KRL G+ EI L+ + + D S E K +I
Sbjct: 70 KGLRSIKRLFGKTLK--EI------LNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEI 121
Query: 172 GAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIA-------------- 217
A + + +K +E L T++ AVITVPA+FND+ R A +IA
Sbjct: 122 AAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAA 181
Query: 218 ----GLNK-------------------------GVFEVKSTNGDTLLGGEGLDIRKDQMA 248
GLNK G+F+V +TNGD +LGG +D+ Q
Sbjct: 182 AYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYL 241
Query: 249 MQRLK--------EAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVG 300
+ + A+KAK L+ + + N+ + + E L+
Sbjct: 242 CNKFDLPNSIDTLQLAKKAKETLTYKDSFNND--------------NISINKQTLEQLIL 287
Query: 301 DLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEA 360
L+++T+N Q+ L+ A N +I V+LVGG TR+P ++ + + F ++PD+A
Sbjct: 288 PLVERTINIAQECLEQA--GNPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKA 345
Query: 361 VAIGAAVQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQGGVLAG 420
V GAA+Q L T+ LL+DV PLSLG+E GG+ ++I RNT IP
Sbjct: 346 VVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPIS--------- 396
Query: 421 DVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQTQVEIKVHQGEREMAADNKL 480
++ TT +QT ++ + QGEREMAAD +
Sbjct: 397 --------------------------VVKEFTTY--ADNQTGIQFHILQGEREMAADCRS 428
Query: 481 LGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIE 540
L +F L G+PP G + EVTF IDA+GI+ VSA +K + I ++ + G+ K EI+
Sbjct: 429 LARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEID 488
Query: 541 NMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQ 600
M++NA + A D R EA+ +AE+++ + E + E L E + + + ++
Sbjct: 489 IMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIK 548
Query: 601 KLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSS 644
+ + +D L S+K F+ KK K +
Sbjct: 549 EAVHARD-----------IILINNSIKEFKSKIKKSMDTKLNII 581
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 212 bits (541), Expect = 5e-62
Identities = 120/386 (31%), Positives = 189/386 (48%), Gaps = 68/386 (17%)
Query: 56 KGQVIGIDLGTTNSCVAVMEG--KQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQA 113
K ++IGIDLGTT S V V + + +I + G ++ PSVVAFT G LVG A QA
Sbjct: 19 KPKIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFT-PGTVLVGYKAVEQA 77
Query: 114 VTNSANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAW---VQGSDEKVYSPSQ 170
N NT Y KR IG+ F E++ + +K+ S A+ V ++ K +P +
Sbjct: 78 EHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEE 137
Query: 171 IGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAG------------ 218
IG+ +++K+++ +E +L T V AVI+VPA F++ QR AT A +AG
Sbjct: 138 IGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTA 197
Query: 219 ------------------------------LNK--GVFEVKSTNGDTLLGGEGLDIR--- 243
LNK G+F ++ G+ LGG+ + R
Sbjct: 198 AALAYGLHKKQDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQ 257
Query: 244 --------------KDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPK-HMNL 288
++ +QRL++A E AKI L+ T I+L + G
Sbjct: 258 YLYQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEY 317
Query: 289 KLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFG 348
+LTR +FE+L DL +K + P + L + ++ E++LVGG TR+P+++ + FG
Sbjct: 318 ELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFG 377
Query: 349 KVPSRAVNPDEAVAIGAAVQGGVLAG 374
K P+ +V+P+ AV G A+Q G++ G
Sbjct: 378 KDPNTSVDPELAVVTGVAIQAGIIGG 403
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 194 bits (496), Expect = 4e-56
Identities = 116/380 (30%), Positives = 185/380 (48%), Gaps = 76/380 (20%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
IG+ G T++C+AV + +A V+ N G R TP+VVAFT D E +VG A++ + N+AN
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFT-DTEVIVGLAAKQGRIRNAAN 61
Query: 120 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVY--SPSQIGAFVLM 177
T K+++GR + DP +K+ S KI+ + ++EK SP ++ +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 178 KMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN----------------- 220
KMKE +++ L + K+ VITVP YF++ Q+ A ++A + AG N
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 221 -----------------------------KGVFEVKSTNGDTLLGGEGL----------- 240
G++ V +T+ D LGGE
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANE 241
Query: 241 -------DIRKDQMAMQRLKEAAEKAKIELSS--SVQTDINLPYLTMDAGGPKHMNLKLT 291
D+R + AM +L AAE AK LS+ S + Y +D ++
Sbjct: 242 FKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGID------FQCSVS 295
Query: 292 RSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVP 351
R++FESL L K + P +K L+ A+ +DI +V+L GG +R+PK+Q ++++F V
Sbjct: 296 RARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVE 355
Query: 352 -SRAVNPDEAVAIGAAVQGG 370
+++PDE +AIGAA Q G
Sbjct: 356 VLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 180 bits (458), Expect = 1e-50
Identities = 121/388 (31%), Positives = 181/388 (46%), Gaps = 79/388 (20%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
V+G D+G + +AV + + N R TPSV++F R +G A+ Q +T++
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSK-NRTIGVAAKNQQITHAN 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQG---SDEKVYSPSQIGAFV 175
NT KR GR F+DP ++K+ +NLSY +V NG V+ +E ++S QI A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+KET+E L V + VI+VP++F D++R++ DA QI GLN
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 221 -----------------------------------KGVFEVKSTNGDTLLGGEG------ 239
KG +V T D LGG+
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 240
Query: 240 ------------LDIRKDQMAMQRLKEAAEKAKIELSSSVQTDI--NLPYLTMDAGGPKH 285
LD + A+ RL + EK K +L SS TD+ N+ D K
Sbjct: 241 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLK-KLMSSNSTDLPLNIECFMND----KD 295
Query: 286 MNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQE 345
++ K+ RS+FE L DL+++ P L+ K D+ V +VGG TR+P V+ + +
Sbjct: 296 VSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAK 355
Query: 346 IFGKVPSRAVNPDEAVAIGAAVQGGVLA 373
FGK S +N DEAVA G A+Q +L+
Sbjct: 356 FFGKDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 165 bits (418), Expect = 3e-45
Identities = 113/387 (29%), Positives = 175/387 (45%), Gaps = 77/387 (19%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
V+GIDLG + VAV + I N R TP+ ++F R +G A+ Q ++N+
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPK-NRSIGAAAKSQVISNAK 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQ---GSDEKVYSPSQIGAFV 175
NT KR GR F DP ++ + +L+Y +V+ G ++ +E+ ++ Q+ A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+KET+E+ L V + V++VP ++ D++R++ DA QIAGLN
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 221 -----------------------------------KGVFEVKSTNGDTLLGGE------- 238
KG +V +T DT LGG
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 239 -----------GLDIRKDQMAMQRLKEAAEKAKIELSS-SVQTDINLPYLTMDAGGPKHM 286
LDI+ A+ RL + EK K +S+ + +N+ D M
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 287 NLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEI 346
N R KF + DL+ + P + L+ A K DI V +VGG TR+P V+ + +
Sbjct: 301 N----RGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKF 356
Query: 347 FGKVPSRAVNPDEAVAIGAAVQGGVLA 373
FGK S +N DEAVA G A+Q +L+
Sbjct: 357 FGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 156 bits (395), Expect = 4e-42
Identities = 99/380 (26%), Positives = 164/380 (43%), Gaps = 76/380 (20%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
G+DLG NS +AV + ++ N +R+TPSVV F R +G + + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGF-GPKNRYLGETGKNKQTSNIKN 59
Query: 120 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASN---GDAWVQGSDEKVYSPSQIGAFVL 176
T KR+IG + P+ +++ K+ + K+V + G ++ V+S +Q+ A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 177 MKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN---------------- 220
K+K+T + ++ + I VP ++ + QR DA +IAGLN
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 221 ----------------------------------KGVFEVKSTNGDTLLGGEGLD----- 241
KG +V T D GG D
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 242 -------------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNL 288
IR++ A R+ AAEK K LS++ ++ + D ++
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDV----DVSS 295
Query: 289 KLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFG 348
+L+R + E LV L+++ P KAL A ++ V ++GG TR+P ++ ++ E FG
Sbjct: 296 QLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFG 355
Query: 349 KVPSRAVNPDEAVAIGAAVQ 368
K S +N DEA+A GAA
Sbjct: 356 KPLSTTLNQDEAIAKGAAFI 375
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 153 bits (388), Expect = 6e-41
Identities = 110/388 (28%), Positives = 175/388 (45%), Gaps = 79/388 (20%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
V+GIDLG N +AV + I N R TP+ ++ R +G A+ Q VTN
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSR-TRAIGNAAKSQIVTNVR 60
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQG---SDEKVYSPSQIGAFV 175
NT + K+L GR FDDP ++ + L Y++ + NG V+ +E+ ++ Q+ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 176 LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN--------------- 220
L K+KETSE L V + VI++P++F D++R++ A Q+AGLN
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 221 -----------------------------------KGVFEVKSTNGDTLLGGEGLD---- 241
KG +V +T D LGG D
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 242 --------------IRKDQMAMQRLKEAAEKAKIELSSSVQTD--INLPYLTMDAGGPKH 285
++++ A+ RL + EK K +L S+ +D +N+ D
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLK-KLMSANASDLPLNIECFMNDLDVSSK 299
Query: 286 MNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQE 345
MN R++FE L L+ + P + ++ A+ + DI + +VGG TR+P V+ +
Sbjct: 300 MN----RAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITS 355
Query: 346 IFGKVPSRAVNPDEAVAIGAAVQGGVLA 373
F K S +N DEAVA G A+Q +L+
Sbjct: 356 FFLKDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 132 bits (335), Expect = 9e-34
Identities = 93/391 (23%), Positives = 151/391 (38%), Gaps = 87/391 (22%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
VIGI+ G T S +A + +A VI N +G R PS +++ + E G A+ Q + N+
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYH-GNQAKAQLIRNAK 60
Query: 119 NTFYATKRLIGRRFDDP---EIKKDMKNLSYKIVRASNGDAWVQGSD-EKVYSPSQIGAF 174
NT + L+G+ F + I + E + + ++
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 175 VLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN-------------- 220
L ++KE +E FL V AV++VP +F+D Q +A A + AGL
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 221 ----------------------------------KGVFEVKSTNGDTLLGGEGLD----- 241
G++ + +T D LGG+ LD
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVK 240
Query: 242 -------------IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLT--MDAGGPKHM 286
R + A+ +L+ +E K LS+S ++ L +D
Sbjct: 241 HFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHS---- 296
Query: 287 NLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEI 346
+ R +FE L + ++ A+ A DI EVLLVGG PK+ S + +
Sbjct: 297 --SINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYL 354
Query: 347 FGK--------VPSRAVNPDEAVAIGAAVQG 369
F + S+A++P E VA G A+Q
Sbjct: 355 FPETTTITAPITVSKALDPSELVARGCAIQA 385
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 109 bits (275), Expect = 8e-26
Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 60 IGIDLGTTNSCVAVME-GKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
+GIDLG+ VA+++ G +++ N E R TPS VAF K GERL G+ A A
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAF-KGGERLFGSDASSLAARFPQ 59
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKN--LSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVL 176
+ K L+G+ DDP + L Y +V S G + SD + YS ++ A +L
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 177 MKMKETSEAFLN-TSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220
K+ +E VK+ VITVP YF +QRQA DA ++AGLN
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLN 164
Score = 103 bits (260), Expect = 8e-24
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 237 GEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFE 296
+D+R + AM +L + A +AK LS++ + +++ L D K+TR++FE
Sbjct: 258 KAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDD----IDFKTKITRAEFE 313
Query: 297 SLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVP-SRAV 355
L DL ++ V P +KAL+ A DI V L+GG TR+PKVQ + E GK + +
Sbjct: 314 ELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLGKHL 373
Query: 356 NPDEAVAIGAAVQG 369
N DEA A+GAA
Sbjct: 374 NADEAAAMGAAYYA 387
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 69.9 bits (172), Expect = 1e-12
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 251 RLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPC 310
RL A E AKI LSS +T I+L ++ + +TR++FE + +++
Sbjct: 302 RLARAVEAAKIALSSQDETRIDLDFV------EVGLEAPVTRAEFEGAIAPDLERIEAAV 355
Query: 311 QKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAV 367
+AL A I V L GG + +P V+ F + +VA G A+
Sbjct: 356 DEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAFGSVASGLAL 412
Score = 54.1 bits (131), Expect = 1e-07
Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 55/202 (27%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
+GID GT+NS VAV Q +++ GS T PS + F + R+ + A
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESA-----LEREVLFGRA- 54
Query: 120 TFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNG--DAWVQGSDEKVYSPSQIGAFVLM 177
A + + P + M+ S K S+ + + G + + + A L
Sbjct: 55 ---AIAAYL----EGPGEGRLMR--SLKSFLGSSLFRETRIFG---RRLTFEDLVARFLA 102
Query: 178 KMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLNKGVFEVKSTNGDTLLGG 237
++K+ +EA L + VI P +F A
Sbjct: 103 ELKQRAEAALGAEIDRVVIGRPVHFVGDDEAA---------------------------- 134
Query: 238 EGLDIRKDQMAMQRLKEAAEKA 259
D A RL+ AA A
Sbjct: 135 -------DAQAEARLRAAARAA 149
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 48.7 bits (117), Expect = 7e-06
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 251 RLKEAAEKAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPC 310
RL +AE+AKI LS +T +L +++ + ++++ E + + + +
Sbjct: 336 RLVRSAEEAKIALSDQAETRASLDFIS------DGLATEISQQGLEEAISQPLARILELV 389
Query: 311 QKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVP 351
Q AL A K D+ + L GG R P +++ + + +P
Sbjct: 390 QLALDQAQVK-PDV--IYLTGGSARSPLIRAALAQQLPGIP 427
Score = 32.9 bits (76), Expect = 0.63
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVV-AFTKD 100
IG D GT N VAVM + +++ S PS + A T++
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTRE 44
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 45.3 bits (108), Expect = 7e-05
Identities = 38/190 (20%), Positives = 59/190 (31%), Gaps = 44/190 (23%)
Query: 59 VIGIDLGTTNSCVAVM----EGKQAKVIENSEGSRT-----TPSVVAFTKDGE-RLVGTP 108
V+GID GTT S VA +VI G P+ + + +G+ G
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYE 61
Query: 109 ARRQAVTNSA---NTFYATK---RLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSD 162
A R+ A + L K
Sbjct: 62 AEREYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKPL------------------- 102
Query: 163 EKVYSPSQIGAFVLMKMKETSEAFLNTSVKNA---------VITVPAYFNDSQRQATKDA 213
+ + A L + E + L + N V+TVPA ++D+ +QA ++A
Sbjct: 103 PPGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREA 162
Query: 214 GQIAGLNKGV 223
AGL
Sbjct: 163 AIKAGLVSSR 172
Score = 35.3 bits (82), Expect = 0.11
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 287 NLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKVQSTVQEI 346
LK++ +SL +I++ ++ ++ L + K + + LVGG P ++S ++E
Sbjct: 319 ELKISGEDMKSLFDPVIEEIIDLIEEQL-EQAEKGDKVKYIFLVGGFGESPYLRSRLKER 377
Query: 347 FGKVP---SRAVNPDEAVAIGAAVQG 369
F R +P AV GA + G
Sbjct: 378 FSSRGIRVLRPPDPQLAVVRGAVLFG 403
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 320 KNSDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAG----- 374
I + L+GG + P + + +IFG P +E A+GAA+ G
Sbjct: 387 GGIPIQSIRLIGGGAKSPAWRQMLADIFG-TPVDVPEGEEGPALGAAILAAWALGEKDLA 445
Query: 375 DVTDVLLLDVTPLSLGIETLGGVFTRLITR 404
+ ++ T L I + L R
Sbjct: 446 ALCSEAVVKQTESVLPIAENVEAYEELYER 475
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.4 bits (89), Expect = 0.013
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 504 DIDANGIVHVS-ARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEA 562
+ +A + H +GT E +I G +DE E + E + + DR E
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKH----EVETEGDRKET 764
Query: 563 LNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPE--ELRKATTT 620
++ E+ + E K +E + ++ A E ++K K+ ++ E E + T
Sbjct: 765 EHEGET---EAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSET 821
Query: 621 LQQASLKLFEMAYKKMAAE-----KESSSGSSSSGSSDQTQSQEEDKKKEDKQ 668
+ E +++ AE K+ G G SD S+EE++++E+++
Sbjct: 822 QADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEE 874
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 37.7 bits (88), Expect = 0.018
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 324 IGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQG-GVLAG-DVTDVLL 381
E+ L+GG + P + + +I + +EA A+GAA+Q L G D DV L
Sbjct: 395 STEIRLIGGGAKSPAWRQIIADIMN-AEVVVPDTEEAAALGAAIQAAWCLTGEDGADVAL 453
Query: 382 LDVT 385
++
Sbjct: 454 AELC 457
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 37.4 bits (86), Expect = 0.032
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 535 SKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAK--- 591
+K + + K AE+ D+ K+ E +A+ + +K + +A+ AEE K
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 592 LKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSGS 651
K++ E +K A++ EE +KA ++A KK A E + + +
Sbjct: 1436 AKKKAEEAKK--ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
Query: 652 SDQTQSQEEDKKKEDKQ 668
+ ++ E K E K+
Sbjct: 1494 EAKKKADEAKKAAEAKK 1510
Score = 35.5 bits (81), Expect = 0.11
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 536 KDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQ 595
K + + K AE+ D+ K+ EA +A++ E + +A E A + +
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
Query: 596 IAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSGSSDQT 655
AE + A K E +KA ++A K KK A E + + ++ +
Sbjct: 1361 AAEEKAEAAEKKK--EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 656 QSQEEDKKKEDKQ 668
++ E KK E+K+
Sbjct: 1419 KADEAKKKAEEKK 1431
Score = 32.8 bits (74), Expect = 0.87
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 543 VKNAEQYATEDKVKRD---RVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKE----- 594
K AE+ ++ K + E +AE + K+ E + ++ AEE K +E
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
Query: 595 ----QIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSG 650
+ E +K + + EE +KA + K+ A +E+
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKK-------AEEENKIKAAEEAKKAEEDKK 1675
Query: 651 SSDQTQSQEEDKKKEDKQ 668
+++ + EED+KK +
Sbjct: 1676 KAEEAKKAEEDEKKAAEA 1693
Score = 31.6 bits (71), Expect = 1.9
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 536 KDEIENMVKNAEQY--ATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
K E AE+ A E K+K + ++ + + V + K E K + AEE K +
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAE 1656
Query: 594 EQI---AELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSG 650
E+ A + A +D EE +KA ++A+ L + A + AE+ +
Sbjct: 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Query: 651 SSDQTQSQEEDKKKEDKQ 668
+++ + EE+ K + ++
Sbjct: 1717 KAEELKKAEEENKIKAEE 1734
Score = 30.1 bits (67), Expect = 4.5
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 536 KDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQ 595
+ E K AE+ D+ K+ EA E+ + K EE K + A+E K E
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA-----KKKAEEAKKK--ADEAKKAAEA 1508
Query: 596 IAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEK-ESSSGSSSSGSSDQ 654
+ + +++ +E +KA + K E K +K E + +++
Sbjct: 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
Query: 655 TQSQEEDKKKEDKQ 668
+ EEDK ++
Sbjct: 1569 AKKAEEDKNMALRK 1582
Score = 29.3 bits (65), Expect = 8.1
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 543 VKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEF---KAQLPAEECAKLKEQIAEL 599
VK AE+ A +D + + E E I E++M F +A + AEE A+ +++ +
Sbjct: 1229 VKKAEE-AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE-ARKADELKKA 1286
Query: 600 QKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSGSSDQTQSQE 659
++ ++ EE +KA ++A KK A E + + ++ + + ++ E
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Query: 660 EDKKKEDKQ 668
K + +
Sbjct: 1347 AAKAEAEAA 1355
Score = 29.3 bits (65), Expect = 8.4
Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 528 IQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTES-KMEEFKAQLPA 586
+++ + K E M A + A + + + L +AE E+ K EE K A
Sbjct: 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
Query: 587 EECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGS 646
++ A+ ++ E +K A + + +K ++A+ E A + A + + +
Sbjct: 1308 KKKAEEAKKADEAKKK-AEEAKKKADAAKKKAEEAKKAA----EAAKAEAEAAADEAEAA 1362
Query: 647 SSSGSSDQTQSQEEDKKKED 666
+ + + +E KK +
Sbjct: 1363 EEKAEAAEKKKEEAKKKADA 1382
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 36.3 bits (85), Expect = 0.046
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERL--VGTPARR 111
IGIDLGT N+ V V K ++ N PSVVA ++ VG A+
Sbjct: 11 IGIDLGTANTLVYV---KGKGIVLNE------PSVVAIDTKTGKVLAVGEEAKE 55
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 36.1 bits (83), Expect = 0.064
Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEAL----NQAESIVHDTESKMEEF---------KAQ 583
D + ++ A + + + K R++ AL N+ E+ V+ + K +E+ + +
Sbjct: 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIE 340
Query: 584 LPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKE 641
L EE L+ I EL K + + + E+ ++ + +L ++ + K
Sbjct: 341 LKEEEIKALQSNIDELHKQLRKQG-ISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 35.5 bits (83), Expect = 0.12
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 17/74 (22%)
Query: 551 TEDKVKRDRVEALN----QAESIVHDTE----SKMEEFKAQLPAEECAKLKEQIAELQKL 602
D+ K + + + QAE+I+ + +K+EE + + +E +L+++IAEL+ +
Sbjct: 404 ESDEPKANLMARFDLSEIQAEAIL-ELRLRRLAKLEEIEIR---KEQDELRKEIAELEAI 459
Query: 603 IANKDSVDPEELRK 616
+A +LRK
Sbjct: 460 LA-----SERKLRK 468
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 35.4 bits (82), Expect = 0.13
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 28/150 (18%)
Query: 543 VKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQL---PAEECAKLKEQIAEL 599
V+ AE+ E K+ + +L + ES++ E K L E E IA L
Sbjct: 877 VELAERQLQELKIDVKSISSLKLVNL---ELESEIIELKKSLSSDLIENLEFKTELIARL 933
Query: 600 QKLIANKDSVDP-----------EELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSS 648
+KL+ N D + +L + + L++ S + E KK + ++S
Sbjct: 934 KKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEY-EDLLKKSTILVREGNKANS 992
Query: 649 ----------SGSSDQTQSQEEDKKKEDKQ 668
S QE K+ ++
Sbjct: 993 ELKNFKKELAELSKQYGALQESTKQLKELP 1022
>gnl|CDD|204831 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
This domain is found in bacteria. This domain is about
360 amino acids in length. This domain is found
associated with pfam00271, pfam00176. The function of
this domain is not known, but structurally it forms an
alpha-beta fold in nature with a central beta-sheet
flanked by helices and loops, the beta-sheet being
mainly antiparallel and flanked by four alpha helices,
among which the two longer helices exhibit a coiled-coil
arrangement.
Length = 362
Score = 34.4 bits (80), Expect = 0.17
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 30/101 (29%)
Query: 535 SKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKE 594
+ +IE +++ AE+ A E Q E I+ + +M++ +L
Sbjct: 276 LRPQIEQLLQKAEKLAEE------------QLEEIIEQAKQQMQQ-----------QLSA 312
Query: 595 QIAELQKLIANKDSVDPEEL-------RKATTTLQQASLKL 628
++A L+ L A ++ EE+ + T L +A L+L
Sbjct: 313 ELARLKALKAVNPNIRDEEIEALEQQREELLTALDKAQLRL 353
>gnl|CDD|223399 COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA
replication, recombination, and repair].
Length = 581
Score = 34.6 bits (80), Expect = 0.17
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 529 QSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEE 588
G +S++E +V+ + + + ++++ + E KMEE L E
Sbjct: 175 PCVGLISEEEYREIVEEVKGFL------------KGKDDAVLQELEEKMEEASENLDFER 222
Query: 589 CAKLKEQIAELQKL 602
A+L++QI L+KL
Sbjct: 223 AARLRDQIKALEKL 236
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 33.9 bits (79), Expect = 0.23
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 22/71 (30%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
+GIDLGT N+ V V +GK V+ +E PSVVA D ++++ AV A
Sbjct: 8 LGIDLGTANTLVYV-KGK-GIVL--NE-----PSVVAIRTDTKKVL-------AVGEEA- 50
Query: 120 TFYATKRLIGR 130
K+++GR
Sbjct: 51 -----KQMLGR 56
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 34.0 bits (79), Expect = 0.24
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEALN--QAESIVHDTE------SKMEEFKAQLPAEE 588
D + +++ + K K++ +E L+ QA+ ++ + +K E K + +E
Sbjct: 350 DFVIEVIRGSI---DLKKAKKELIEELSEIQADYLL---DMRLRRLTKEEIEKLE---KE 400
Query: 589 CAKLKEQIAELQKLIANKDSVDPEELR 615
+L+++IAEL+K++A++ + +EL
Sbjct: 401 IEELEKEIAELEKILASEKKLWIKELD 427
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 33.4 bits (77), Expect = 0.25
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 546 AEQYATEDKVKRDRVEALNQAESIVHDTESKM----EEFKAQLPAEECAKLKEQIAELQK 601
A Q E K++ EA +AE + E + E+ + EE L++ L+
Sbjct: 52 ARQKQLERKLE----EAQARAEKLEEKAELALQAGNEDLAREA-LEEKQSLEDLAKALEA 106
Query: 602 LIAN--------KDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSGSSD 653
+ K + E + A ++ +LK + A K S G SSS +
Sbjct: 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMA 166
Query: 654 QTQSQEE 660
+ EE
Sbjct: 167 AFERMEE 173
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 32.7 bits (75), Expect = 0.41
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 322 SDIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLA 373
+ I ++ GG +R P + + + G+ P EA A+GAA+ V A
Sbjct: 143 APIDRIIASGGGSRNPLLLQLLADALGR-PVEVPETAEATALGAALLAAVAA 193
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 33.3 bits (77), Expect = 0.46
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 535 SKDEIENMVKNA---EQYATEDK-VKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECA 590
++ +++ + + EDK V++D + L + I + + E+ K QL A+ A
Sbjct: 37 TEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKI-DRQKEETEQLKQQL-AQAPA 94
Query: 591 KLKEQIAELQKLIANKDSVDPEELRKAT-TTLQQ 623
KL++ AEL+ L + D E L + L+
Sbjct: 95 KLRQAQAELEALKDDNDEETRETLSTLSLRQLES 128
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 33.0 bits (76), Expect = 0.51
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERL--VGTPARR 111
G+ IGIDLGT N V V +GK + E PSVVA K+ ++ VG ARR
Sbjct: 3 GRDIGIDLGTANVLVYV-KGKGIVLNE--------PSVVAIDKNTNKVLAVGEEARR 50
>gnl|CDD|238451 cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are
involved in biosynthesis of the molybdenum cofactor
(MoCF) an essential cofactor of a diverse group of redox
enzymes. MoCF biosynthesis is an evolutionarily
conserved pathway present in eubacteria, archaea, and
eukaryotes. MoCF contains a tricyclic pyranopterin,
termed molybdopterin (MPT). MogA, together with MoeA,
is responsible for the metal incorporation into MPT, the
third step in MoCF biosynthesis. The plant homolog Cnx1
is a MoeA-MogA fusion protein. The mammalian homolog
gephyrin is a MogA-MoeA fusion protein, that plays a
critical role in postsynaptic anchoring of inhibitory
glycine receptors and major GABAa receptor subtypes. In
contrast, MoaB shows high similarity to MogA, but little
is known about its physiological role. All well studied
members of this family form highly stable trimers.
Length = 152
Score = 31.7 bits (73), Expect = 0.60
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 337 PKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTDVLLL---------DVTPL 387
P + ++E +V + + PD+ I A+ V D++L DVTP
Sbjct: 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGV-DLILTTGGTGLAPRDVTP- 80
Query: 388 SLGIETLGGVFTRLI 402
E + + +
Sbjct: 81 ----EATRPLLDKEL 91
>gnl|CDD|221833 pfam12889, DUF3829, Protein of unknown function (DUF3829). This is
a small family of proteins from several bacterial
species, whose function is not known. It may, however,
be related to the GvpL_GvpF family of proteins,
pfam06386.
Length = 277
Score = 32.4 bits (74), Expect = 0.73
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 544 KNAEQYATEDKV--KRDRVEALNQAESIVHDTESKMEEFKAQLPAE-ECAKLKEQIAELQ 600
N E+ + + K + A E ++ E + F ++ A+ + A L +AEL+
Sbjct: 142 INDERLLEQLEELKKEGKKIAYYTLELLLE-AEQLLNLFSSKDVAKKDAADLDAALAELE 200
Query: 601 KLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSGSSSSGSSDQT 655
K + + + E+ + + +S F+ + K S SGS D T
Sbjct: 201 KALEDLKKLTKEDGDEEKASSFMSSADEFKSSAKSFIGRVRDKKPYSKSGSGDPT 255
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 31.8 bits (73), Expect = 0.80
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 30/114 (26%)
Query: 536 KDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQ 595
K+EI M KN E E ++ + + + E K +E+
Sbjct: 33 KEEIAEMKKNEEHN-----------------EKLMAEIAQENKRLV-----EPLKKAEEE 70
Query: 596 IAELQKLIAN--KDSVDPEELRKATTTLQQ--ASLKLF----EMAYKKMAAEKE 641
+ EL+K + + KD + L+ L++ +LK E ++K+ E++
Sbjct: 71 VEELRKKLKDYEKDKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVERERD 124
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 32.2 bits (74), Expect = 0.92
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVLAGDVTD 378
+GE+ VGG R + ++ G+ R +P+EA A GAA V G ++
Sbjct: 414 RLGELRFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGARGAAAIAAVGLGLLSF 469
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 31.8 bits (72), Expect = 1.0
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 517 DKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESK 576
D G +Q IQS +K + K EQ A E K K+ + E + + +
Sbjct: 56 DPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQA-----AEQERLKQLEKER 110
Query: 577 MEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDP---EELRKATTTLQQASLKLFEMAY 633
++ + Q AEE K + + Q+ A K + + E KA + A LK A
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAK 170
Query: 634 KKMAAEKESSSGSSSSGSSDQTQSQEEDKKK 664
KK +++ + + + + + E + K
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAEAEAK 201
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 31.8 bits (73), Expect = 1.2
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 22/84 (26%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
IGIDLGT N+ V V +GK + E PSVVA ++++ AV N A
Sbjct: 4 IGIDLGTANTLVYV-KGKGIVLNE--------PSVVAINTKTKKVL-------AVGNEA- 46
Query: 120 TFYATKRLIGRRFDDPEIKKDMKN 143
K+++GR + + +K+
Sbjct: 47 -----KKMLGRTPGNIVAVRPLKD 65
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 31.6 bits (73), Expect = 1.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 22/71 (30%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSAN 119
IGIDLGT N+ V V + V+ +E PSVVA +++ AV A
Sbjct: 1 IGIDLGTANTLVYV--KGKGIVL--NE-----PSVVAIDTKTGKIL-------AVGEEA- 43
Query: 120 TFYATKRLIGR 130
K ++GR
Sbjct: 44 -----KEMLGR 49
Score = 29.3 bits (67), Expect = 5.7
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 256 AEKAKIELSSSVQTDINLPYLTMDAGG-------PKHMNLKLTRSKFESLVGDLIKKTVN 308
AE+ KIE+ S+ D TM+ G P+ + + V + +K+ ++
Sbjct: 198 AEEIKIEIGSAYPLDEE---ETMEVKGRDLVTGLPRTVEVT------SEEVREALKEPLD 248
Query: 309 PCQKALQDADCKN-----SDIGE--VLLVGGMTRMPKVQSTVQEIFGKVPSR-AVNPDEA 360
+A++ K +DI + ++L GG + + + E G +P R A +P
Sbjct: 249 EIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEETG-LPVRVAEDPLTC 307
Query: 361 VAIGAA 366
VA GA
Sbjct: 308 VAKGAG 313
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 31.6 bits (72), Expect = 1.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 60 IGIDLGTTNSCVAVMEGKQAKVIENS------EGSRTTPSVVAFTKDGERLVG-TPARRQ 112
IGIDLGT N+ V V +G+ + E S + T S++A + + ++G TP
Sbjct: 5 IGIDLGTANTLVYV-KGRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV 63
Query: 113 AV 114
A+
Sbjct: 64 AI 65
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 32.0 bits (73), Expect = 1.4
Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 538 EIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIA 597
E++ + + AE+Y + + ++ L + E + E ++ + ++ +E + +E++
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI--KELEEKEERLE 341
Query: 598 ELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMA 637
EL+K + +EL K L++ +L+E A K
Sbjct: 342 ELKKKL--------KELEKRLEELEE-RHELYEEAKAKKE 372
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation
of sedoheptulose to produce sedoheptulose 7-phosphate
and ADP. The presence of Mg2+ or Mn2+ might be required
for catalytic activity. Members of this subfamily
belong to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 448
Score = 31.5 bits (72), Expect = 1.4
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENS 85
V+GID+GTT+ +++ + +V+ +
Sbjct: 3 VLGIDIGTTSVKACLLDSETKEVLASQ 29
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 31.8 bits (73), Expect = 1.5
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 547 EQYATEDKVKRDRVEALNQA-ESIVHDTESKMEEFKA--QLPAEECAKLKEQIAELQKLI 603
E + ++E + E++ +E A L AE K +E A+L++L
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 604 ANKDSVDPEELRKATTTLQQASLKL 628
E +K QA+ +L
Sbjct: 205 EKAAETSQERKQKRKEITDQAAKRL 229
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 31.8 bits (73), Expect = 1.5
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 538 EIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIA 597
+I + ++Y + + K ++ + E ++ E +M+E L EE A+L+++I
Sbjct: 595 DILDGEYEEDEYKAKIEKKASKMSK-KELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIK 653
Query: 598 ELQKLI 603
EL++ +
Sbjct: 654 ELKEEL 659
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 31.6 bits (73), Expect = 1.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 558 DRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQ--KLIANK-DSVDPEEL 614
+RVEAL E + + E ++E+ KA+L A L Q E+ K++A + + VD + L
Sbjct: 719 ERVEAL-LEE--LKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVEGVDAKAL 775
Query: 615 RKATTTLQQ 623
R L+
Sbjct: 776 RTLADDLKD 784
>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 31.4 bits (72), Expect = 1.8
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 539 IENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAE 598
E + K A+ DK ++ + L + E + + + ++ E+ L
Sbjct: 145 WERLEKRAKAGKKLDKELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLL 204
Query: 599 LQK---LIANKDSVDPEELRKAT 618
K +AN D L +
Sbjct: 205 TAKPMLYVANVSEDDLANLNEYV 227
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 31.2 bits (71), Expect = 1.9
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 535 SKDEIENMVKNAEQYA-TEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
SKDE +V E YA + + R L++ ++ E ++E+ K AE+ +L+
Sbjct: 57 SKDEEIELVPLEEFYAQAPEDISRPEKTPLDEHNLMLARLEWELEQRKEL--AEKLKELE 114
Query: 594 EQIAELQKLIANK----DSVDP--EELRKATTTLQQASLKLFEMAYKKMAAEKESS 643
+ +LQ+ I K S+ P ++L+KAT +Q+ + + K + E +
Sbjct: 115 SEKEKLQQDIEKKKEFLSSLPPKLKDLKKATLPVQEY----LGLPFTKKWKQHELA 166
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 31.4 bits (71), Expect = 1.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 629 FEMAYKKMAAEKESSSGSSSSGSSDQTQSQEEDKKKEDK 667
+ A +K+AA++E +G+ G + Q E K+ K
Sbjct: 359 IKKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGGK 397
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region. This family
represents an N-terminal conserved region found in
several huntingtin-associated protein 1 (HAP1)
homologues. HAP1 binds to huntingtin in a polyglutamine
repeat-length-dependent manner. However, its possible
role in the pathogenesis of Huntington's disease is
unclear. This family also includes a similar N-terminal
conserved region from hypothetical protein products of
ALS2CR3 genes found in the human juvenile amyotrophic
lateral sclerosis critical region 2q33-2q34.
Length = 307
Score = 30.9 bits (70), Expect = 2.0
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 522 KEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFK 581
+E+ ++S K E + EQ D VK+ R EA +Q S+ + K E+ +
Sbjct: 174 EEENEHLRSEASHLKTETVTYEEK-EQQLVNDCVKQLR-EANDQIASLSEELAKKTEDLE 231
Query: 582 AQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKL 628
Q EE L QI +LQK +++ EEL++ + A +L
Sbjct: 232 RQ--QEEITHLLSQIVDLQKK-CKSYALENEELQQHLAAAKDAQRQL 275
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 30.8 bits (71), Expect = 2.4
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 553 DKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLI 603
D V + + + E ++ + E +M+E L EE A+L+++I EL++ +
Sbjct: 598 DSVYKKDKLSKKELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL 648
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 31.0 bits (71), Expect = 2.5
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 538 EIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIA 597
+IE + AE+ + + ++ + +N+ ES++ E +E+ +L +L E
Sbjct: 83 DIEEQLFEAEELNDKFRFRKAK-HEINEIESLLDLIEEDIEQILEEL-----QELLESEE 136
Query: 598 ELQKLIANKDSVDPEELRK 616
+ ++ + + ELRK
Sbjct: 137 KNREEV-EQLKDLYRELRK 154
>gnl|CDD|237785 PRK14671, uvrC, excinuclease ABC subunit C; Provisional.
Length = 621
Score = 30.8 bits (70), Expect = 2.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 565 QAESIVHDTESKMEEFKAQLPAEECAKLKEQI------AELQKLIANKDSVD 610
+ +++ +M+ A+L EE A+LK+QI AE QK+++ D D
Sbjct: 212 KTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLKRYAERQKVVSQ-DGAD 262
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 30.7 bits (70), Expect = 2.8
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 20/89 (22%)
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEALN----QAESIVHDTE----SKMEEFKAQLPAEE 588
DE+ +++ ++ + + K + + QAE+I+ D + +EE K + +E
Sbjct: 390 DEVIEIIRESK---DKPEAKEELMARFGLSEKQAEAIL-DLRLRRLTGLEEEKIE---KE 442
Query: 589 CAKLKEQIAELQKLIANKDSVDPEELRKA 617
+L+++IA+L+K++A E L
Sbjct: 443 LKELEKEIADLEKILA-----SEERLLDI 466
>gnl|CDD|202017 pfam01868, UPF0086, Domain of unknown function UPF0086. This
family consists of several archaeal and eukaryotic
proteins. The archaeal proteins are found to be
expressed within ribosomal operons and several of the
sequences are described as ribonuclease P protein
subunit p29 proteins.
Length = 89
Score = 28.3 bits (64), Expect = 2.9
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 41 SQNESLQARYKSDGVKGQVIGIDLGTTNSCVAVMEGKQAKVI--ENSEGSRTTPSVVAFT 98
S N SL G+KG+V+ T N+ V E + K I + S P
Sbjct: 22 STNPSLV------GIKGRVV---DETRNTLVIETEKGREKTIPKDGSVFRFELPDGEKVE 72
Query: 99 KDGERLVGTPARR 111
DG LVG P R
Sbjct: 73 IDGSLLVGRPEDR 85
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 70
Score = 27.9 bits (63), Expect = 3.0
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 125 KRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPS 169
RL+G EIKK +K L +K V S+ D KV PS
Sbjct: 12 NRLLGIELSPEEIKKILKRLGFK-VEVSDEDTL------KVTVPS 49
>gnl|CDD|217231 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large chain,
oligomerisation domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain.
Length = 122
Score = 29.1 bits (66), Expect = 3.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 591 KLKEQIAELQKLIANKDSVDPEELRKA 617
K+KE I EL+K + + E LRKA
Sbjct: 42 KIKE-IVELEKELKKGLPLLDELLRKA 67
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 30.4 bits (69), Expect = 3.2
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 581 KAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEK 640
K Q+ + A +++QI +LQK IA+ V L K+T + +S K+A K
Sbjct: 230 KNQVKSTILATIQQQIDQLQKSIASYQ-VQKAGLTKSTASNYASSQN------SKLAQLK 282
Query: 641 ESSSGSSSSGSSDQTQSQEEDKKKEDKQ 668
E +D Q E + K
Sbjct: 283 EQQLAKVKQEITDLNQKLLELESKIKSL 310
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth
in archaea or eukaryotes, but is found in mitochondria
or chloroplasts of some eukaryotic species.
Length = 179
Score = 29.9 bits (68), Expect = 3.2
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 534 LSKDEIENMVKNAEQYATEDKVK--RDRVEALNQAESIVHDTE-SKMEEFKAQLPAEECA 590
L+++ + +VK+A++ A E KV R +A ++ + + + E S+ E KA+ E+
Sbjct: 101 LTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAE---EDLQ 157
Query: 591 KL-KEQIAELQKLIANK 606
KL E I ++ +L+ +K
Sbjct: 158 KLTDEYIKKIDELLKSK 174
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 29.3 bits (66), Expect = 3.9
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 536 KDEIENMVKNAEQYAT---EDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECA-- 590
+ EIE ++KNA + A + + + + EA + E+ + ESK E F QL ++
Sbjct: 61 EHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELK 120
Query: 591 -KLKEQIAELQKLIANK 606
+L Q+ E ++ + K
Sbjct: 121 EQLLSQMPEFKEALNAK 137
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 30.0 bits (68), Expect = 4.1
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 592 LKEQIAELQKLIANKDSVDPEELRK--ATTTLQ----QASLKLFEMAYKKMAAEKESSSG 645
L+EQI +L++ + + + D EEL+ + + L+ E + + +ESS
Sbjct: 173 LEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKERLEFLEKLLEDLERSEESSDR 232
Query: 646 SSSSGSS 652
SSS+ +
Sbjct: 233 SSSTDTE 239
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 30.2 bits (67), Expect = 4.2
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 637 AAEKESSSGSSSSGSSDQTQSQEEDKKKEDKQ 668
++ SSS SSSS SSD + S+E+ +K +K+
Sbjct: 1254 SSSSSSSSCSSSSSSSDSSSSEEDGDEKNEKE 1285
>gnl|CDD|237431 PRK13570, PRK13570, anthranilate synthase component I; Provisional.
Length = 455
Score = 29.9 bits (68), Expect = 4.3
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 185 AFLNTSVKNAVITVPAYFNDSQRQATKDAGQ--IAGLNKGVFEVKSTNGDTLLGGEGLDI 242
A++ K+ + + K+ G+ I N VFE+KS G+ +G
Sbjct: 20 AYMRLKGKHKFLLESIPRD-------KEKGRYSIIAYNP-VFEIKSYGGELYIGNG---E 68
Query: 243 RKDQMAMQRLKEAAEKAKIELS 264
+ D + L+E K++++
Sbjct: 69 KIDGDPLDFLEEVIVKSQVDSE 90
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in length.
The function of this family is unknown.
Length = 156
Score = 29.2 bits (66), Expect = 4.4
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 565 QAESIVHDTESKMEEFKAQLPA--EECAKLKEQIAELQKLIAN--KDSVDPEELRKATTT 620
Q + I+ + ++ K++L EE LK+Q+ K I + K D EEL+K
Sbjct: 3 QIDKIMAEYGKDIQNPKSKLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEK 62
Query: 621 LQQASLKLFEMAYKKMAAEK 640
L+Q + E K+A K
Sbjct: 63 LKQQNKTAKEEYEAKLADTK 82
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases
[Carbohydrate transport and metabolism].
Length = 502
Score = 30.0 bits (68), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIE 83
V+GID+GTT+ + + +V+
Sbjct: 6 VLGIDIGTTSVKAVLFDEDGGEVVA 30
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 4.4
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 20/98 (20%)
Query: 552 EDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPA-------------------EECAKL 592
E+K ++D E LN ES + + + ++E ++ Q EE L
Sbjct: 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL 256
Query: 593 KEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFE 630
+ +I +L++ IA + + EEL + L++ +L E
Sbjct: 257 EAEIEDLRETIAETER-EREELAEEVRDLRERLEELEE 293
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 29.7 bits (67), Expect = 5.5
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 10/120 (8%)
Query: 535 SKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIV---HDTESKMEEFKAQLPAEECAK 591
S E ++ + + E + +L S D ++ F +E +
Sbjct: 88 SDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKE 147
Query: 592 LKEQIAELQKLIANKDSVDPEELRKATTTLQQASL-KLFEMAYKKMAAEKESSSGSSSSG 650
L ++ EL+ +A + S PE Q A + K +E+A K M +E + S
Sbjct: 148 LLREVEELESRLATEPSPAPELEE------QLALMEKSYELAAKYMPRGQERLPVAPESK 201
>gnl|CDD|234792 PRK00558, uvrC, excinuclease ABC subunit C; Validated.
Length = 598
Score = 29.7 bits (68), Expect = 5.5
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 564 NQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKL-----IANKDSVD 610
+ + ++ + E KMEE L E A+ ++QI L+++ ++ KD D
Sbjct: 198 GKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGED 249
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 29.7 bits (67), Expect = 5.9
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 330 VGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAA 366
+GG +R + GK P ++ E VA+GAA
Sbjct: 392 IGGGSRNKLWLQLKASVLGK-PIEVLDEAELVALGAA 427
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 29.7 bits (68), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 576 KMEEFKAQLPAEECAKLKEQIAELQKLIA 604
EEF LP EE +L+E+I EL++ +
Sbjct: 165 TEEEF-EALPEEEREELEEKIDELEEELQ 192
>gnl|CDD|187870 cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 185
Score = 28.7 bits (65), Expect = 6.4
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 249 MQRLKEAAEKAKIELSSSVQTDINLPYLTMD 279
++R +E E+A+ ++ +LP++ +
Sbjct: 115 LKRGEETEEEARARDIPDTESRTDLPFIQLK 145
>gnl|CDD|232867 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments [DNA metabolism,
DNA replication, recombination, and repair].
Length = 574
Score = 29.3 bits (66), Expect = 7.2
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 532 GGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDT-ESKMEEFKAQLPAEECA 590
++++E + +V+ E + N V E KME+ L EE A
Sbjct: 170 KEITEEEYQQIVEKIELF-------------FNGRPQEVIKELEQKMEKASENLEFEEAA 216
Query: 591 KLKEQIAELQKLIA 604
++++QIA +++L
Sbjct: 217 RIRDQIAAVRELNE 230
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 29.4 bits (66), Expect = 7.8
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 543 VKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKL 602
+Q + + RD +E + E + +++ E + + A L+ ++ LQ
Sbjct: 275 QTQYDQLSRDLGRARDELETAREEER---ELDARTEALEREADA-----LRTRLEALQGS 326
Query: 603 IANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKE 641
A +D+ + E R LQ A+ + + + +E
Sbjct: 327 PAYQDAEELERARADAEALQAAAADARQAIREAESRLEE 365
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 29.2 bits (65), Expect = 7.9
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 20/174 (11%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
V+ ID GTT+S A + + I VA K L+ TP R
Sbjct: 2 VVAIDFGTTSSGYAFSFIEDPEAIHMMRKWEGGDPGVAHQKTPTCLLLTPDLR------F 55
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFV--- 175
++F T R D E + + +K+ S D ++ E V + ++ A
Sbjct: 56 HSFGYTARDYYHDLDPEEARDWLYFEKFKMKIHSASDLTMKTELEAV-NGKRVQALEVFA 114
Query: 176 ----------LMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGL 219
L ++K+ S + L + V+TVPA + +Q ++A +AGL
Sbjct: 115 HALRFFREHALQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGL 168
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 27.9 bits (63), Expect = 8.3
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 537 DEIENMVKNAEQYATEDKVKRDRVEALN----QAESIVHDTESKMEEFKAQLPAEECAKL 592
+E+E +K EQ E K + +L Q E V E +++E K + EE KL
Sbjct: 17 EELEEKLKELEQENLE---KEQEITSLQKKNQQLEEEVEKLEEQLKEAKEK--LEESEKL 71
Query: 593 KEQIAELQK---LIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKES 642
L + L+ + + L++ T L++A K E K A E E
Sbjct: 72 ATNAEALTRRIQLLEEELEESEKRLKETTEKLREADKKAEESERKVKALENER 124
>gnl|CDD|145355 pfam02151, UVR, UvrB/uvrC motif.
Length = 36
Score = 25.8 bits (58), Expect = 8.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 567 ESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKL 602
+ ++ + E +MEE + E+ AKL++QI L+K
Sbjct: 1 KKLIKELEEEMEEAAEEEDFEKAAKLRDQIKALEKQ 36
>gnl|CDD|148289 pfam06591, Phage_T4_Ndd, T4-like phage nuclear disruption protein
(Ndd). This family consists of several nuclear
disruption (Ndd) proteins from T4-like phages. Early in
a bacteriophage T4 infection, the phage ndd gene causes
the rapid destruction of the structure of the
Escherichia coli nucleoid. The targets of Ndd action may
be the chromosomal sequences that determine the
structure of the nucleoid.
Length = 154
Score = 28.1 bits (62), Expect = 8.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 93 SVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPEI 137
V+A K GE +G+ + ++ F+ +L GR F +P +
Sbjct: 15 EVIATIKGGEWFLGSEVHKDFLSKEGFYFFVKGKLDGRPFSNPCV 59
>gnl|CDD|204272 pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This protein family, typified by
YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas)
family strictly associated with the Ypest subtype of
CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas
Subtype Ypest protein 4.
Length = 182
Score = 28.3 bits (64), Expect = 8.9
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 242 IRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMD 279
R + M+R E+A+ + S++ ++LP+L +
Sbjct: 105 ARLRRRLMKRAGLTEEEARARIPKSLEKRLDLPFLQLK 142
>gnl|CDD|215901 pfam00401, ATP-synt_DE, ATP synthase, Delta/Epsilon chain, long
alpha-helix domain. Part of the ATP synthase CF(1).
These subunits are part of the head unit of the ATP
synthase. This subunit is called epsilon in bacteria and
delta in mitochondria. In bacteria the delta (D) subunit
is equivalent to the mitochondrial Oligomycin sensitive
subunit, OSCP (pfam00213).
Length = 48
Score = 25.9 bits (58), Expect = 9.3
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 561 EALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQ 600
EA +AE + E E +A+ A LK A L+
Sbjct: 10 EAKERAEEALAKAEGDKEYIRAE------AALKRARARLR 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.343
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,647,453
Number of extensions: 3226175
Number of successful extensions: 3530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3329
Number of HSP's successfully gapped: 258
Length of query: 668
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 565
Effective length of database: 6,369,140
Effective search space: 3598564100
Effective search space used: 3598564100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (27.7 bits)