RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3918
(668 letters)
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 214 bits (545), Expect = 2e-66
Identities = 102/162 (62%), Positives = 129/162 (79%), Gaps = 1/162 (0%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTNSA 118
+IGIDLGTTNSCVA+M+G +V+EN+EG RTTPS++A+T+DGE LVG PA+RQAVTN
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 61
Query: 119 NTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVLMK 178
NT +A KRLIGRRF D E+++D+ + +KI+ A NGDAWV+ +K +P QI A VL K
Sbjct: 62 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQK-MAPPQISAEVLKK 120
Query: 179 MKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220
MK+T+E +L V AVITVPAYFND+QRQATKDAG+IAGL
Sbjct: 121 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLE 162
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 205 bits (523), Expect = 1e-63
Identities = 97/159 (61%), Positives = 118/159 (74%), Gaps = 10/159 (6%)
Query: 419 AGDVTDVLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKS---------QTQVEIKVHQ 469
+ +V D+LLLDVTPLSLGIET GGV T LI RNTTIPTK++ Q V I+V++
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 470 GEREMAADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQ 529
GER M DN LLG+F L GIPPAPRGVPQIEVTFDIDANGI++VSA DK TGKE +I I
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 530 S-SGGLSKDEIENMVKNAEQYATEDKVKRDRVEALNQAE 567
+ G LSK++IE MV+ AE+Y ED+ +RD+V + N E
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 197 bits (503), Expect = 5e-60
Identities = 103/170 (60%), Positives = 122/170 (71%), Gaps = 18/170 (10%)
Query: 221 KGVFEVKSTNGDTLLGGE------------------GLDIRKDQMAMQRLKEAAEKAKIE 262
+ FEV +TNGDT LGGE G+D+R D +AMQRLKEAAEKAKIE
Sbjct: 28 EKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIE 87
Query: 263 LSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNS 322
LSS+ QTD+NLPY+T DA GPKHMN+K+TR+K ESLV DL+ +++ + ALQDA S
Sbjct: 88 LSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVS 147
Query: 323 DIGEVLLVGGMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAAVQGGVL 372
DI +V+LVGG TRMP VQ V E FGK P + VNPDEAVAIGAAVQGGVL
Sbjct: 148 DIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL 197
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 192 bits (489), Expect = 3e-58
Identities = 88/167 (52%), Positives = 113/167 (67%), Gaps = 5/167 (2%)
Query: 57 GQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTPARRQAVTN 116
G +GIDLG+T SCV V + + ++I N +G+RTTPS VAFT D ERL+G A+ Q N
Sbjct: 1 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMN 59
Query: 117 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQ---GSDEKVYSPSQIGA 173
NT + KRLIGRRFDD ++ DMK+ + +V G VQ + K + P ++ +
Sbjct: 60 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSS 118
Query: 174 FVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLN 220
VL KMKE +EA+L +V NAV+TVPAYFNDSQRQATKDAG IAGLN
Sbjct: 119 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLN 165
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 166 bits (422), Expect = 2e-48
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 23/177 (12%)
Query: 216 IAGLNKGVFEVKSTNGDTLLGGE------------------GLDIRKDQMAMQRLKEAAE 257
I + G+FEVKST GDT LGGE DI +++ A++RL+ A E
Sbjct: 21 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACE 80
Query: 258 KAKIELSSSVQTDINLPYLTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDA 317
+AK LSSS Q I + L +TR++FE L DL + T++P +KAL+DA
Sbjct: 81 RAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDA 136
Query: 318 DCKNSDIGEVLLVGGMTRMPKVQSTVQEIF-GKVPSRAVNPDEAVAIGAAVQGGVLA 373
S I +++LVGG TR+PK+Q +Q+ F GK ++++NPDEAVA GAAVQ +L+
Sbjct: 137 KLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 160 bits (406), Expect = 2e-47
Identities = 81/118 (68%), Positives = 92/118 (77%), Gaps = 9/118 (7%)
Query: 425 VLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQT---------QVEIKVHQGEREMA 475
VLLLDVTPLSLGIET+GGV T LI +NTTIPTK SQ V I V QGER+ A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 476 ADNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGG 533
ADNK LGQF L GI PAPRG+PQIEVTFDIDA+GI+HVSA+DK +GKEQ+I I++S G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 140 bits (354), Expect = 4e-40
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 9/115 (7%)
Query: 428 LDVTPLSLGIETLGGVFTRLITRNTTIPTKKS---------QTQVEIKVHQGEREMAADN 478
+DV PLSLG+ET+GG+ ++I RNTTIP ++ QT + I V QGERE+ D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 479 KLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGG 533
+ L +F L GIP P G I VTF +DA+G++ V+A +K TG E I ++ S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 96.3 bits (240), Expect = 1e-24
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
L++DEI+ MV++AE A D+ + V+ NQ + ++H T ++EE +LPA++ ++
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 594 EQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMA 632
+ L+ + + D + L Q S KL E+A
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIA 96
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 92.5 bits (229), Expect = 9e-23
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 44/165 (26%)
Query: 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAF-TKDGERLVGTPARRQAVTN 116
+ IGIDLGT N+ V + ++ N PSV+A + GE L + +
Sbjct: 1 KDIGIDLGTANTLVFLRGKG---IVVNE------PSVIAIDSTTGEILKVGLEAKNMIGK 51
Query: 117 SANTFYATKRLIGRRFDDPEIKKDMKNLSYKIVRASNGDAWVQGSDEKVYSPSQIGAFVL 176
+ T A + + D + +L
Sbjct: 52 TPATIKAIRPMRDGVIADYTV----------------------------------ALVML 77
Query: 177 MKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLNK 221
++ +N VI VP D +R+A DAG AG +K
Sbjct: 78 RYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASK 122
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 84.2 bits (208), Expect = 4e-20
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 534 LSKDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLK 593
L+ EI +M+K++ YA +D R E +A ++ + A L A E +
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 594 EQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKK 635
+ A L ++ D + + +A + + + +
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQ 99
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 79.2 bits (194), Expect = 6e-18
Identities = 16/157 (10%), Positives = 49/157 (31%), Gaps = 18/157 (11%)
Query: 216 IAGLNKGVFEVKSTNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPY 275
I+ + + + GD+ LG + + +
Sbjct: 21 ISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------------SSYLADD 67
Query: 276 LTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTR 335
+ + ++ ++ S+V + + + + ++ + + + S V+++GG
Sbjct: 68 IIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAE 127
Query: 336 MPKVQSTVQEIFGKVPSRAV---NPDEAVAIGAAVQG 369
+ + V++ R N + G + G
Sbjct: 128 L--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 74.6 bits (182), Expect = 6e-16
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 7/155 (4%)
Query: 219 LNKGVFEVKSTNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYL-- 276
L V + + ++ + + AE+ KIE+ + + N
Sbjct: 26 LGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETT 85
Query: 277 --TMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNS---DIGEVLLVG 331
+D L L + + ++ V + L+ + + L G
Sbjct: 86 VSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTG 145
Query: 332 GMTRMPKVQSTVQEIFGKVPSRAVNPDEAVAIGAA 366
G + + + + +Q+ G R+ P AVA GA
Sbjct: 146 GGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAG 180
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 50.1 bits (119), Expect = 8e-08
Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 20/147 (13%)
Query: 220 NKGVFEVKSTNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPYLTMD 279
+ V + +G D +++ + + +
Sbjct: 25 LMDMEPVVELSFSLQIGVG--DA--ISALSRKIAK-----ETGFVVPFDLAQEALSHPVM 75
Query: 280 AGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTRMPKV 339
+ +++ E L +I+ + + ++ VGG + + +
Sbjct: 76 FRQKQVGGPEVSGPILEDLANRIIENIRLNLRGEVDRVTS-------LIPVGGGSNL--I 126
Query: 340 QSTVQEIFGK--VPSRAVNPDEAVAIG 364
+EI V + + A A+G
Sbjct: 127 GDRFEEIAPGTLVKIKPEDLQFANALG 153
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 35.6 bits (81), Expect = 0.013
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 10/151 (6%)
Query: 216 IAGLNKGVFEVKSTNGDTLLGGEGLDIRKDQMAMQRLKEAAEKAKIELSSSVQTDINLPY 275
I N + D G G + D MA + ++ A++ S+ + I+
Sbjct: 110 IHVENGTMTNF--QMNDKCAAGTGRFL--DVMANILEVKVSDLAELGAKSTKRVAISSTC 165
Query: 276 LTMDAGGPKHMNLKLTRSKFESLVGDLIKKTVNPCQKALQDADCKNSDIGEVLLVGGMTR 335
K + D+I + + + +V++ GG+ +
Sbjct: 166 TVFAESEVISQLSK------GTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQ 219
Query: 336 MPKVQSTVQEIFGKVPSRAVNPDEAVAIGAA 366
V+ ++E G + A+GAA
Sbjct: 220 NYGVRGALEEGLGVEIKTSPLAQYNGALGAA 250
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 35.3 bits (81), Expect = 0.026
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 559 RVEALNQAESIVH-DTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKA 617
R+ A+ A+S++ D E M + + +L EL + V+ + +
Sbjct: 17 RIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLEN 76
Query: 618 TTTLQQASLKLFEMAYKKMAA 638
++ +++ + + + A
Sbjct: 77 LNEYERGIVRVLDRSIRIARA 97
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 30.1 bits (68), Expect = 0.093
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 565 QAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQK-LIAN 605
+ +H+ E M + L EE A++++Q+ +L++ IA
Sbjct: 14 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 55
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related
At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 215
Score = 31.7 bits (71), Expect = 0.18
Identities = 6/74 (8%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 561 EALNQAESIVHDTESKMEEFKAQLPAEECAKL-KEQIAELQKLIANKDSVDPEELRKATT 619
E+ + T ++ + + + ++ + N E
Sbjct: 141 ESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVKNIAERCLENASGEVLGEAEDVLV 200
Query: 620 TLQQASLKLFEMAY 633
+ + + +EM+
Sbjct: 201 RVLELEVAFWEMSR 214
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 32.1 bits (72), Expect = 0.24
Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 14/146 (9%)
Query: 500 EVTFDIDANGIVHVSARDKGTGKEQQIVIQSSGGLSKDEIENMVKNAEQYATEDKVKRDR 559
+ +++ G + K I K + + + V
Sbjct: 629 AIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGP 688
Query: 560 VEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATT 619
E E ++ ++ L E KL +Q E + + N + +++
Sbjct: 689 EELYGTYEYLL---GMRIW----SLTKERYQKLLKQKQEKETELENLLKLSAKDIWN--- 738
Query: 620 TLQQASLKLFEMAYKKMAAEKESSSG 645
LK FE+ Y++ + G
Sbjct: 739 ----TDLKAFEVGYQEFLQRDAEARG 760
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 29.1 bits (64), Expect = 0.80
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 58 QVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRT 90
+IGID+G T +++ K+ K++ T
Sbjct: 3 PLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPT 35
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator
PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 215
Score = 29.4 bits (65), Expect = 1.0
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 580 FKAQLPAEECAKLKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYK 634
++ + + L+K+I + + LR+ T + L +EMA++
Sbjct: 159 YREWGKVYLSNEYLNLVGRLRKIIDSSGHSGYDRLRRIFITGSKFELAFWEMAWR 213
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.2 bits (65), Expect = 1.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 575 SKMEEFKAQLPAEECAKLKEQIAELQKLIANKD---SVDPEELRK 616
+ +E K +E +L +QIAEL +++ + D V EEL
Sbjct: 438 TGLEHEKLL---DEYKELLDQIAELLRILGSADRLMEVIREELEL 479
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.7 bits (59), Expect = 3.2
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 536 KDEIENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQ 595
K + DKV RD EA+N+ E K + P + ++ E
Sbjct: 23 KIIAMEKLYAVFTDYEHDKVSRD--EAVNKI------RLDTEEHLKEKFPEVDQFEIIES 74
Query: 596 IAELQK 601
+ K
Sbjct: 75 FNIVAK 80
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 28.2 bits (62), Expect = 3.4
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 592 LKEQIAELQKLIANKDSVDPEELRKATTTLQQASLKLFEMAYKKMAAEKE 641
+KE+ E++KL+A D + PE+++ ++ A ++ E ++ +E
Sbjct: 1 MKEKKKEIEKLLARPD-LTPEQMKNY--GMEYAKIEEIENITNRIKETQE 47
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 28.5 bits (62), Expect = 3.7
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 594 EQIAELQKLIANKDSVDPEELRKATTTLQQAS 625
+ + ++ +L+ S D R L+Q +
Sbjct: 8 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLN 39
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine
encephalitis virus [TaxId: 11036]}
Length = 156
Score = 27.2 bits (60), Expect = 3.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 17/53 (32%)
Query: 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDGERLVGTP 108
+G+V+ I LG N EGSRT SVV + + G + TP
Sbjct: 115 QGRVVAIVLGGVN-----------------EGSRTALSVVMWNEKGVTVKYTP 150
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 27.4 bits (60), Expect = 5.4
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSE 86
V+ ID GTT+S + + K+ + +
Sbjct: 3 VMAIDQGTTSSRAIIFDRNGKKIGSSQK 30
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 27.3 bits (60), Expect = 6.2
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 532 GGLSKDEI-ENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECA 590
G+ ++M Y D + ++ L I++ + E F + EC
Sbjct: 183 AGVPPIISCKSMAFALRLYMAGDHISKELKNVL-----IMYYLQYPFEPFFPESCKIECQ 237
Query: 591 KLKEQIAELQKLIANKDSVD 610
KL I L+ KD+++
Sbjct: 238 KLGIDIEMLKSFNVEKDAIE 257
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 27.0 bits (59), Expect = 6.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 59 VIGIDLGTTNSCVAVMEGKQAKVIENSE 86
++ +D GTT+S VM+ + +
Sbjct: 5 IVALDQGTTSSRAVVMDHDANIISVSQR 32
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 26.0 bits (57), Expect = 7.0
Identities = 10/62 (16%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 540 ENMVKNAEQYATEDKVKRDRVEALNQAESIVHDTESKMEEFKAQLPAEECAKLKEQIAEL 599
E MV+ ++ + +++ + L + + + ++ + L ++ A KE I+
Sbjct: 36 ERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVH--LDLWVKSLSPQDRAAYKEYISNK 93
Query: 600 QK 601
+K
Sbjct: 94 RK 95
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella
flexneri [TaxId: 623]}
Length = 228
Score = 26.6 bits (58), Expect = 7.9
Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 12/128 (9%)
Query: 27 NFSVLLRKSPGSLYSQNESLQARYKSDGVKGQVIGIDLGTTNSCVAVMEGKQAKVIENSE 86
N + L P + +++ K + + +G+D + + + +E +
Sbjct: 81 NLCIALELGPHTYVGEHQL--ICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVD 138
Query: 87 ----------GSRTTPSVVAFTKDGERLVGTPARRQAVTNSANTFYATKRLIGRRFDDPE 136
+V+ L +T+ AT+ ++ R DD
Sbjct: 139 LSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYP 198
Query: 137 IKKDMKNL 144
+++ ++ +
Sbjct: 199 MQQLLRAV 206
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 150
Score = 26.5 bits (58), Expect = 8.0
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 162 DEKVYSPSQIGAFVLMKMKETSEAFLNTSVKNAVITVPAYFNDSQRQATKDAGQIAGLNK 221
I V+ + V ++TV ++ QA AG G N
Sbjct: 81 KGSTMHFEYISEAVVHGLMRVGLDS-GVPVILGLLTV-----LNEEQALYRAGLNGGHNH 134
Query: 222 GV 223
G
Sbjct: 135 GN 136
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 26.5 bits (58), Expect = 8.0
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 610 DPEELRKATTTLQQASLKLFEMAYKKMAAEKESSSG 645
+ + + + A F ++ SSG
Sbjct: 125 VKDTGERLSHAVGCA----FAACLERKQKRSGPSSG 156
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus
[TaxId: 11033]}
Length = 149
Score = 26.4 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 17/46 (36%)
Query: 56 KGQVIGIDLGTTNSCVAVMEGKQAKVIENSEGSRTTPSVVAFTKDG 101
KG+V+ I LG N EGSRT SVV + KD
Sbjct: 109 KGRVVAIVLGGAN-----------------EGSRTALSVVTWNKDM 137
>d1xyna_ b.29.1.11 (A:) Xylanase II {Trichoderma reesei, xynI
[TaxId: 51453]}
Length = 178
Score = 26.2 bits (58), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 622 QQASLKLFEMAYKKMAAEKESSSGSSS 648
L L +M Y+ +A E SGS+S
Sbjct: 147 ASLGLHLGQMNYQVVAVEGWGGSGSAS 173
>d1f5ja_ b.29.1.11 (A:) Xylanase II {Dictyoglomus thermophilum
[TaxId: 14]}
Length = 199
Score = 26.2 bits (58), Expect = 9.6
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 622 QQASLKLFEMAYKKMAAEKESSSGSSSSGSSDQTQS 657
L L + + E SSGS++ + +QS
Sbjct: 163 ANRGLNLGTIDQITLCVEGYQSSGSANITQNTFSQS 198
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 25.4 bits (55), Expect = 9.8
Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 572 DTESKMEEFKAQLPAEECAKLKEQIAELQKLIANKD 607
D ++ ++ K L ++ ++ E I + + + + D
Sbjct: 75 DRKAALQSQKEIL-MKKKQRMDEMIQTIDRTLLSVD 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.343
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,196,218
Number of extensions: 101270
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 53
Length of query: 668
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 577
Effective length of database: 1,158,166
Effective search space: 668261782
Effective search space used: 668261782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.0 bits)