BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3920
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 9/139 (6%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ESSRSH+VF I L D++ S V +LSLVDLAGSER ++T
Sbjct: 207 VAATNMNEESSRSHAVFKITLTHTLYDVK-----SGTSGEKVGKLSLVDLAGSERATKTG 261
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEG 118
A+G RL+E NIN SL TL + L +Q G N++ P+R+S LT L K G
Sbjct: 262 -AAGDRLKEGSNINKSLTTLGLVISAL-ADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319
Query: 119 DVRMIVCVNPSSDDYDENL 137
M+ V+P++D+YDE L
Sbjct: 320 KTAMVATVSPAADNYDETL 338
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N SSRSH+VF I L Q DL+ D S++ LVDLAGSER T
Sbjct: 256 VASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERS-----SRIRLVDLAGSERAKSTE 310
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQ----------QQGTNRSP-------PFRE 103
A+GQRLRE NIN SL TL + L + + + G R+P P+R+
Sbjct: 311 -ATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRD 369
Query: 104 SKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENL 137
S LT L K G MI C++P+ DYDE L
Sbjct: 370 SVLTWLLKDSLGGNSKTAMIACISPT--DYDETL 401
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 4 TLCNKESSRSHSVFMIRLVQ---APLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
T N SSRSH+VF + L Q AP L L VS+ VDLAGSER +T
Sbjct: 205 THLNHLSSRSHTVFTVTLEQRGRAPSRLP----RPAPGQLLVSKFHFVDLAGSERVLKTG 260
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
++G+RL+E+ IN+SL+ L + L + Q++G++ P+R+SK+T + K G
Sbjct: 261 -STGERLKESIQINSSLLALGNVISALGDPQRRGSHI--PYRDSKITRILKDSLGGNAKT 317
Query: 121 RMIVCVNPSSDDYDENLIGATNFEIRA 147
MI CV+PSS D+DE L N+ RA
Sbjct: 318 VMIACVSPSSSDFDETL-NTLNYASRA 343
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I L + + + L+LVDLAGSER + + V
Sbjct: 262 ASTASNEHSSRSHSIFIIHLSGSN---------AKTGAHSYGTLNLVDLAGSERINVSQV 312
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RLRE NIN SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 313 V-GDRLRETQNINKSLSALGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 369
Query: 122 MIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 370 MFVNISPSSSHINETL 385
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 13/137 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N SSRSHS+FM+R+ + +V+ +K + V +L+LVDLAGSER S+T
Sbjct: 200 VAATQMNDTSSRSHSIFMVRI-------ECSEVIENKEVIRVGKLNLVDLAGSERQSKTG 252
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A+G+ L E IN SL L + L E P+R+SKLT L + G
Sbjct: 253 -ATGETLVEGAKINLSLSALGLVISKLVEGATH-----IPYRDSKLTRLLQDSLGGNSKT 306
Query: 121 RMIVCVNPSSDDYDENL 137
M ++P+S +YDE +
Sbjct: 307 LMCANISPASTNYDETM 323
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 7 NKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQR 66
N SSRSH+VF I L Q D+ S + + ++++SL+DLAGSER S T A G R
Sbjct: 222 NATSSRSHAVFQIYLRQQ------DKTASINQNVRIAKMSLIDLAGSERAS-TSGAKGTR 274
Query: 67 LREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCV 126
E NIN SL+ L + L +++++ N+ P+R SKLT L K G MI V
Sbjct: 275 FVEGTNINRSLLALGNVINALADSKRK--NQHIPYRNSKLTRLLKDSLGGNCQTIMIAAV 332
Query: 127 NPSSDDYDE 135
+PSS YD+
Sbjct: 333 SPSSVFYDD 341
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 4 TLCNKESSRSHSVFMIRLVQ---APLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
T N SSRSH+VF + L Q AP L L VS+ VDLAGSER +T
Sbjct: 205 THLNHLSSRSHTVFTVTLKQRGRAPSRLP----RPAPGQLLVSKFHFVDLAGSERVLKTG 260
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
++G+ +E+ IN+SL+ L + L + Q++G+N P+R+SK+T + K G
Sbjct: 261 -STGELRKESIQINSSLLALGNVISALGDPQRRGSNI--PYRDSKITRILKDSLGGNAKT 317
Query: 121 RMIVCVNPSSDDYDENLIGATNFEIRAH 148
MI CV+PSS D+DE L N+ RA
Sbjct: 318 VMIACVSPSSSDFDETL-NTLNYASRAQ 344
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I L + + + L+LVDLAGSER + + V
Sbjct: 205 ASTASNEHSSRSHSIFIIHLSGSN---------AKTGAHSYGTLNLVDLAGSERINVSQV 255
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RLRE NIN SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 256 V-GDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 312
Query: 122 MIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 313 MFVNISPSSSHINETL 328
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I L + + + L+LVDLAGSER + + V
Sbjct: 217 ASTASNEHSSRSHSIFIIHLSGSN---------AKTGAHSYGTLNLVDLAGSERINVSQV 267
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RLRE NIN SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 268 V-GDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 324
Query: 122 MIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 325 MFVNISPSSSHINETL 340
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 224 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 276
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 329
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 330 TSIIATISPASLNLEETL 347
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 224 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 276
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 329
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 330 TSIIATISPASLNLEETL 347
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 223 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 275
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 276 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 328
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 329 TSIIATISPASLNLEETL 346
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 215 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 267
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 268 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 320
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 321 TSIIATISPASLNLEETL 338
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 226 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 278
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 279 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 331
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 332 TSIIATISPASLNLEETL 349
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 224 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 276
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 329
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 330 TSIIATISPASLNLEETL 347
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 224 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 276
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 329
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 330 TSIIATISPASLNLEETL 347
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 224 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 276
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 329
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 330 TSIIATISPASLNLEETL 347
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 209 AATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK------IGKLNLVDLAGSENIGRSG- 261
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A +R REAGNIN SL+TL + L E R+P P+RESKLT + + G
Sbjct: 262 AVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTR 314
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 315 TSIIATISPASLNLEETL 332
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 15/138 (10%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N +SSRSH+VF I + ++G+ +L + +L+LVDLAGSE S+
Sbjct: 225 ATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLK------IGKLNLVDLAGSENVSKAGN 278
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
G R+RE NIN SL+TL + L +R+P P+RESKLT L + G
Sbjct: 279 EKGIRVRETVNINQSLLTLGRVITAL-------VDRAPHVPYRESKLTRLLQESLGGRTK 331
Query: 120 VRMIVCVNPSSDDYDENL 137
+I ++P D +E L
Sbjct: 332 TSIIATISPGHKDIEETL 349
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I L + + + L+LVDLAGS R + + V
Sbjct: 206 ASTASNEHSSRSHSIFIIHLSGSN---------AKTGAHSYGTLNLVDLAGSARINVSQV 256
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RLRE NIN SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 257 V-GDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 313
Query: 122 MIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 314 MFVNISPSSSHINETL 329
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I L + + + L+LVDLAGSER + + V
Sbjct: 206 ASTASNEHSSRSHSIFIIHLSGSN---------AKTGAHSYGTLNLVDLAGSERINVSQV 256
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RLRE NI SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 257 V-GDRLRETQNIKKSLSCLGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 313
Query: 122 MIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 314 MFVNISPSSSHINETL 329
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SS SHS+F+I L + + + L+LVDLAGSER + + V
Sbjct: 206 ASTASNEHSSASHSIFIIHLSGSN---------AKTGAHSYGTLNLVDLAGSERINVSQV 256
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RLRE NIN SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 257 V-GDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 313
Query: 122 MIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 314 MFVNISPSSSHINETL 329
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSH+VF I Q D + + + ++K VS++SLVDLAGSER T
Sbjct: 221 VAATNMNETSSRSHAVFNIIFTQKRHDAETN-ITTEK----VSKISLVDLAGSERADSTG 275
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-------PFRESKLTHLFKTY 113
A G RL+E NIN SL TL + L E P+R+S LT L +
Sbjct: 276 -AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN 334
Query: 114 FTGEGDVRMIVCVNPSSDDYDENL 137
G M+ ++P+ +YDE L
Sbjct: 335 LGGNSRTAMVAALSPADINYDETL 358
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSH+VF I Q D + + + ++K VS++SLVDLAGSER T
Sbjct: 205 VAATNMNETSSRSHAVFNIIFTQKRHDAETN-ITTEK----VSKISLVDLAGSERADSTG 259
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-------PFRESKLTHLFKTY 113
A G RL+E NIN SL TL + L E P+R+S LT L +
Sbjct: 260 -AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN 318
Query: 114 FTGEGDVRMIVCVNPSSDDYDENL 137
G M+ ++P+ +YDE L
Sbjct: 319 LGGNSRTAMVAALSPADINYDETL 342
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSH+VF I Q D + + + ++K VS++SLVDLAGSER T
Sbjct: 205 VAATNMNETSSRSHAVFNIIFTQKRHDAETN-ITTEK----VSKISLVDLAGSERADSTG 259
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-------PFRESKLTHLFKTY 113
A G RL+E NIN SL TL + L E P+R+S LT L +
Sbjct: 260 -AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN 318
Query: 114 FTGEGDVRMIVCVNPSSDDYDENL 137
G M+ ++P+ +YDE L
Sbjct: 319 LGGNSRTAMVAALSPADINYDETL 342
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSH+VF I Q D + + + ++K VS++SLVDLAGSER T
Sbjct: 205 VAATNMNETSSRSHAVFNIIFTQKRHDAETN-ITTEK----VSKISLVDLAGSERADSTG 259
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-------PFRESKLTHLFKTY 113
A G RL+E NIN SL TL + L E P+R+S LT L +
Sbjct: 260 -AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN 318
Query: 114 FTGEGDVRMIVCVNPSSDDYDENL 137
G M+ ++P+ +YDE L
Sbjct: 319 LGGNSRTAMVAALSPADINYDETL 342
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+ T N+ SSRSH++F+I + + + L G+ + V +L+LVDLAGSER ++T
Sbjct: 216 VGATNMNEHSSRSHAIFVITIECSEVGLDGEN------HIRVGKLNLVDLAGSERQAKTG 269
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G+RL+EA IN SL L + L + G + P+R+SKLT L + G
Sbjct: 270 -AQGERLKEATKINLSLSALGNVISALVD----GKSTHIPYRDSKLTRLLQDSLGGNAKT 324
Query: 121 RMIVCVNPSSDDYDENL 137
M+ V P+S + +E L
Sbjct: 325 VMVANVGPASYNVEETL 341
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 14/136 (10%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N SSRSHS+F+I DLQG L+ + + L+L+DLAGSER + +
Sbjct: 578 AATKSNDHSSRSHSIFII-------DLQGYNSLTKES--SYGTLNLIDLAGSERLNNSR- 627
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G RL+E IN SL L + L N + G++ P+R SKLT+L K G
Sbjct: 628 AEGDRLKETQAINKSLSCLGDVIHSL--NLKDGSH--VPYRNSKLTYLLKHSLGGNSKTL 683
Query: 122 MIVCVNPSSDDYDENL 137
M V ++P + D +E +
Sbjct: 684 MFVNISPLTKDLNETI 699
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 14/130 (10%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSHSVF+I + Q +L+ + LS K L LVDLAGSE+ S+T
Sbjct: 199 IAVTNMNEHSSRSHSVFLINVKQE--NLENQKKLSGK-------LYLVDLAGSEKVSKTG 249
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G L EA NIN SL L + L + G P+R+SKLT + + G
Sbjct: 250 -AEGTVLDEAKNINKSLSALGNVISALAD----GNKTHIPYRDSKLTRILQESLGGNART 304
Query: 121 RMIVCVNPSS 130
+++C +P+S
Sbjct: 305 TIVICCSPAS 314
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I L +G + ++ + L+LVDLAGSER + + V
Sbjct: 230 ASTAANEHSSRSHSIFIIHL-------EGKNEGTGEKSQGI--LNLVDLAGSERLNSSMV 280
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G+RLRE +IN SL L + L N G R PFR SKLT+L + G
Sbjct: 281 V-GERLRETQSINKSLSCLGDVIHAL--NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTL 337
Query: 122 MIVCVNPSS 130
M V ++P++
Sbjct: 338 MFVNISPAA 346
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ESSRSHS+F+I + Q ++ + QL LVDLAGSE+ +T
Sbjct: 196 VAATNMNQESSRSHSIFVITITQKNVETGSAK---------SGQLFLVDLAGSEKVGKTG 246
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
ASGQ L EA IN SL L + L + G + P+R+SKLT + + G
Sbjct: 247 -ASGQTLEEAKKINKSLSALGMVINALTD----GKSSHVPYRDSKLTRILQESLGGNSRT 301
Query: 121 RMIVCVNPSSDDYDENLIGATNFEIRA 147
+I+ +PSS + D + F +RA
Sbjct: 302 TLIINCSPSSYN-DAETLSTLRFGMRA 327
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSHS+F+I + Q + Q +Q LS K L LVDLAGSE+ S+T
Sbjct: 192 VAVTNMNEHSSRSHSIFLINVKQE--NTQTEQKLSGK-------LYLVDLAGSEKVSKTG 242
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G L EA NIN SL L + L E P+R+SK+T + + G
Sbjct: 243 -AEGAVLDEAKNINKSLSALGNVISALAEGSTY-----VPYRDSKMTRILQDSLGGNCRT 296
Query: 121 RMIVCVNPSSDDYDENLIGAT 141
+++C +PSS Y+E+ +T
Sbjct: 297 TIVICCSPSS--YNESETKST 315
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSHS+F+I + Q + Q +Q LS K L LVDLAGSE+ S+T
Sbjct: 192 VAVTNMNEHSSRSHSIFLINVKQE--NTQTEQKLSGK-------LYLVDLAGSEKVSKTG 242
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G L EA NIN SL L + L E P+R+SK+T + + G
Sbjct: 243 -AEGAVLDEAKNINKSLSALGNVISALAEGSTY-----VPYRDSKMTRILQDSLGGNCRT 296
Query: 121 RMIVCVNPSSDDYDENLIGAT 141
+++C +PSS Y+E+ +T
Sbjct: 297 TIVICCSPSS--YNESETKST 315
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHSVFM+ + G + + + + +L+LVDLAGSER + + V
Sbjct: 209 AATRSNERSSRSHSVFMVHI-------NGRNLHTGE--TSQGKLNLVDLAGSERINSSAV 259
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+G+RLRE NIN SL L + L N R PFR SKLT+L + G+
Sbjct: 260 -TGERLRETQNINKSLSCLGDVIYAL--NTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTL 316
Query: 122 MIVCVNPSSDDYDENL 137
M V + P + E L
Sbjct: 317 MFVNIPPDPNHISETL 332
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSHS+F+I + Q + Q +Q LS K L LVDLAGSE+ S+T
Sbjct: 192 VAVTNMNEHSSRSHSIFLINVKQE--NTQTEQKLSGK-------LYLVDLAGSEKVSKTG 242
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G L EA NIN SL L + L E P+R+SK+T + + G
Sbjct: 243 -AEGAVLDEAKNINKSLSALGNVISALAEGSTY-----VPYRDSKMTRILQDSLGGNCRT 296
Query: 121 RMIVCVNPSSDDYDENLIGAT 141
+++C +PSS Y+E+ +T
Sbjct: 297 TIVICCSPSS--YNESETKST 315
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 22/140 (15%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
+T N SSRSH+ F I L++ L G + SLVDLAG+ERG+ T
Sbjct: 273 GQTFANSNSSRSHACFQI-LLRTKGRLHG-------------KFSLVDLAGNERGADTSS 318
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGD-V 120
A Q E IN SL+ L+ C+ L +N+ PFRESKLT + + F GE
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIGENSRT 373
Query: 121 RMIVCVNP--SSDDYDENLI 138
MI ++P SS +Y N +
Sbjct: 374 CMIAMISPGISSCEYTLNTL 393
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 22/140 (15%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
+T N SSRSH+ F I L++ L G + SLVDLAG+ERG+ T
Sbjct: 201 GQTFANSNSSRSHACFQI-LLRTKGRLHG-------------KFSLVDLAGNERGADTSS 246
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGD-V 120
A Q E IN SL+ L+ C+ L +N+ PFRESKLT + + F GE
Sbjct: 247 ADRQTRMEGAEINKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIGENSRT 301
Query: 121 RMIVCVNP--SSDDYDENLI 138
MI ++P SS +Y N +
Sbjct: 302 CMIAMISPGISSCEYTLNTL 321
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 22/140 (15%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
+T N SSRSH+ F I +++A + G + SLVDLAG+ERG+ T
Sbjct: 253 GQTFANSNSSRSHACFQI-ILRAKGRMHG-------------KFSLVDLAGNERGADTSS 298
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGD-V 120
A Q E IN SL+ L+ C+ L +N+ PFRESKLT + + F GE
Sbjct: 299 ADRQTRMEGAEINKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIGENSRT 353
Query: 121 RMIVCVNP--SSDDYDENLI 138
MI ++P SS +Y N +
Sbjct: 354 CMIATISPGISSCEYTLNTL 373
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 18/140 (12%)
Query: 2 ARTLCNKESSRSHSVF-MI---RLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGS 57
T N+ SSRSH++F MI R P + +G + VS L+LVDLAGSER +
Sbjct: 191 GETKMNQRSSRSHTIFRMILESREKGEPSNCEG--------SVKVSHLNLVDLAGSERAA 242
Query: 58 RTHVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGE 117
+T A+G RL+E NIN SL L ++ L + Q G +R+SKLT + + G
Sbjct: 243 QTG-AAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFIN---YRDSKLTRILQNSLGGN 298
Query: 118 GDVRMIVCVNPSSDDYDENL 137
R+I + P S +DE L
Sbjct: 299 AKTRIICTITPVS--FDETL 316
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 19/136 (13%)
Query: 4 TLCNKESSRSHSVFMI--RLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N+ SSRSH++ ++ R V L+ T +L+LVDLAGSER ++
Sbjct: 198 TNLNEHSSRSHALLIVTVRGVDCSTGLR-----------TTGKLNLVDLAGSERVGKSG- 245
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G RLREA +IN SL L + LR Q PFR SKLT+L + +G+
Sbjct: 246 AEGSRLREAQHINKSLSALGDVIAALRSRQGH-----VPFRNSKLTYLLQDSLSGDSKTL 300
Query: 122 MIVCVNPSSDDYDENL 137
M+V V+P + E L
Sbjct: 301 MVVQVSPVEKNTSETL 316
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
+T N SSRSH+VF I +++ L G + SL+DLAG+ERG+ T
Sbjct: 291 GQTSANAHSSRSHAVFQI-ILRRKGKLHG-------------KFSLIDLAGNERGADTSS 336
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGD-V 120
A Q E IN SL+ L+ C+ L N+ PFR SKLT + + F GE
Sbjct: 337 ADRQTRLEGAEINKSLLALKECIRALGRNKPH-----TPFRASKLTQVLRDSFIGENSRT 391
Query: 121 RMIVCVNP 128
MI ++P
Sbjct: 392 CMIATISP 399
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSER---GS 57
+ART N+ SSRSHSVF L + G+ +C + LSLVDLAGSER G
Sbjct: 239 VARTAQNERSSRSHSVFQ-------LQISGEHSSRGLQC--GAPLSLVDLAGSERLDPGL 289
Query: 58 RTHVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGE 117
+RLRE IN+SL TL + L + P+R SKLT+L + G
Sbjct: 290 ALGPGERERLRETQAINSSLSTLGLVIMALSNKESHV-----PYRNSKLTYLLQNSLGGS 344
Query: 118 GDVRMIVCVNPSSDDYDENL 137
+ M V ++P ++ E+L
Sbjct: 345 AKMLMFVNISPLEENVSESL 364
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 7 NKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQR 66
N ESSRSH++ I L + ++ +++ +DLAGSERG+ T + Q
Sbjct: 206 NDESSRSHAILNIDLKDI------------NKNTSLGKIAFIDLAGSERGADTVSQNKQT 253
Query: 67 LREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCV 126
+ NIN SL+ L+ C+ + ++ PFR+S+LT + + F G+ MI +
Sbjct: 254 QTDGANINRSLLALKECIRAMDSDKNH-----IPFRDSELTKVLRDIFVGKSKSIMIANI 308
Query: 127 NPS 129
+P+
Sbjct: 309 SPT 311
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 4 TLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVAS 63
TL N++SSRSH + + + L Q + +LS VDLAGSER ++ A
Sbjct: 197 TLMNEQSSRSHLIVSVIIESTNLQTQ---------AIARGKLSFVDLAGSERVKKSGSA- 246
Query: 64 GQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMI 123
G +L+EA +IN SL L + L N+ P+R KLT L G M
Sbjct: 247 GNQLKEAQSINKSLSALGDVISALSSG-----NQHIPYRNHKLTMLMSDSLGGNAKTLMF 301
Query: 124 VCVNPSSDDYDE 135
V ++P+ + DE
Sbjct: 302 VNISPAESNLDE 313
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 4 TLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVAS 63
T N+ESSRSH ++ +V +DLQ K LS VDLAGSER ++ A
Sbjct: 205 TNMNEESSRSH--LILSVVIESIDLQTQSAARGK-------LSFVDLAGSERVKKSGSA- 254
Query: 64 GQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMI 123
G +L+EA +IN SL L + L N+ P+R KLT L G M
Sbjct: 255 GNQLKEAQSINKSLSALGDVIGAL-----SSGNQHIPYRNHKLTMLMSDSLGGNAKTLMF 309
Query: 124 VCVNPSSDDYDE 135
V V+P+ + DE
Sbjct: 310 VNVSPAESNLDE 321
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A NK SSRSH +F I L + LS+++ +T S+++LVDLAGSER ++
Sbjct: 223 IASHTMNKNSSRSHCIFTIYLEAH------SRTLSEEKYIT-SKINLVDLAGSERLGKSG 275
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
+ GQ L+EA IN SL L + L + ++ PFR+ KLTH K G ++
Sbjct: 276 -SEGQVLKEATYINKSLSFLEQAIIALGDQKRDHI----PFRQCKLTHALKDSLGGNCNM 330
Query: 121 RMIVCVNPSSDDYDENL 137
++ + + +E L
Sbjct: 331 VLVTNIYGEAAQLEETL 347
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 23/148 (15%)
Query: 4 TLCNKESSRSHSVFMIRLVQ----APLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRT 59
T N+ SSRSH+V ++++ Q AP + +L L+DLAGSE RT
Sbjct: 216 TRLNQRSSRSHAVLLVKVDQRERLAPFRQR------------EGKLYLIDLAGSEDNRRT 263
Query: 60 HVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGD 119
G RL+E+G IN SL L ++ L QG R P+R+SKLT L + G
Sbjct: 264 G-NKGLRLKESGAINTSLFVLGKVVDAL----NQGLPRV-PYRDSKLTRLLQDSLGGSAH 317
Query: 120 VRMIVCVNPSSDDYDENLIGATNFEIRA 147
+I + P Y + + A NF R+
Sbjct: 318 SILIANIAPERRFYLDT-VSALNFAARS 344
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+V L+L G ++K+ ++V ++LVDLAGSE
Sbjct: 251 ASTAGNERSSRSHAV-------TKLELIGRH--AEKQEISVGSINLVDLAGSESPK---- 297
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ R+ E NIN SL L + L + Q P+R SKLTHL G
Sbjct: 298 -TSTRMTETKNINRSLSELTNVILALLQKQDH-----IPYRNSKLTHLLMPSLGGNSKTL 351
Query: 122 MIVCVNPSSDDYDENL 137
M + V+P D + E++
Sbjct: 352 MFINVSPFQDCFQESV 367
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+V L+L G ++K+ ++V ++LVDLAGSE
Sbjct: 254 ASTAGNERSSRSHAV-------TKLELIGRH--AEKQEISVGSINLVDLAGSESPK---- 300
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ R+ E NIN SL L + L + Q P+R SKLTHL G
Sbjct: 301 -TSTRMTETKNINRSLSELTNVILALLQKQDH-----IPYRNSKLTHLLMPSLGGNSKTL 354
Query: 122 MIVCVNPSSDDYDENL 137
M + V+P D + E++
Sbjct: 355 MFINVSPFQDCFQESV 370
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+V L+L G ++K+ ++V ++LVDLAGSE
Sbjct: 262 ASTAGNERSSRSHAV-------TKLELIGRH--AEKQEISVGSINLVDLAGSESPK---- 308
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ R+ E NIN SL L + L + Q P+R SKLTHL G
Sbjct: 309 -TSTRMTETKNINRSLSELTNVILALLQKQDH-----IPYRNSKLTHLLMPSLGGNSKTL 362
Query: 122 MIVCVNPSSDDYDENL 137
M + V+P D + E++
Sbjct: 363 MFINVSPFQDCFQESV 378
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+V L+L G ++K+ ++V ++LVDLAGSE
Sbjct: 248 ASTAGNERSSRSHAV-------TKLELIGRH--AEKQEISVGSINLVDLAGSESPK---- 294
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ R+ E NIN SL L + L + Q P+R SKLTHL G
Sbjct: 295 -TSTRMTETKNINRSLSELTNVILALLQKQDH-----IPYRNSKLTHLLMPSLGGNSKTL 348
Query: 122 MIVCVNPSSDDYDENL 137
M + V+P D + E++
Sbjct: 349 MFINVSPFQDCFQESV 364
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 33/160 (20%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRT- 59
+ T N+ SSRSH++F+I + + G + + V +L+LVDLAGSER ++
Sbjct: 216 VGSTHMNEVSSRSHAIFIITVECSERGSDG------QDHIRVGKLNLVDLAGSERQNKAG 269
Query: 60 -HVASG---------------------QRLREAGNINNSLMTLRTCLEVLRENQQQGTNR 97
+ A G +R +EA IN SL L + L N+
Sbjct: 270 PNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHI-- 327
Query: 98 SPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENL 137
P+R+SKLT L + G M+ + P+S YDE+L
Sbjct: 328 --PYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESL 365
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+V L+L G ++K+ ++V ++LVDLAGSE
Sbjct: 251 ASTAGNERSSRSHAV-------TKLELIGRH--AEKQEISVGSINLVDLAGSESPK---- 297
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ R+ E NI SL L + L + Q P+R SKLTHL G
Sbjct: 298 -TSTRMTETKNIKRSLSELTNVILALLQKQDH-----IPYRNSKLTHLLMPSLGGNSKTL 351
Query: 122 MIVCVNPSSDDYDENL 137
M + V+P D + E++
Sbjct: 352 MFINVSPFQDCFQESV 367
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 7 NKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQR 66
N SSRSH++ I + K S++++VDLAGSE G R G
Sbjct: 214 NSNSSRSHAIVTIHV---------------KSKTHHSRMNIVDLAGSE-GVRRTGHEGVA 257
Query: 67 LREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCV 126
+E NIN L+++ + + + P+R+S LT + + T + + + C+
Sbjct: 258 RQEGVNINLGLLSINKVVMSMAAG-----HTVIPYRDSVLTTVLQASLTAQSYLTFLACI 312
Query: 127 NPSSDDYDENL 137
+P D E L
Sbjct: 313 SPHQCDLSETL 323
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 7 NKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQR 66
N SSRSH++ I + K S++++VDLAGSE G R G
Sbjct: 214 NSNSSRSHAIVTIHV---------------KSKTHHSRMNIVDLAGSE-GVRRTGHEGVA 257
Query: 67 LREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCV 126
+E NIN L+++ + + + P+R+S LT + + T + + + C+
Sbjct: 258 RQEGVNINLGLLSINKVVMSMAAG-----HTVIPYRDSVLTTVLQASLTAQSYLTFLACI 312
Query: 127 NPSSDDYDENL 137
+P D E L
Sbjct: 313 SPHQCDLSETL 323
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 70 AGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPS 129
A NIN SL L + L E GT P+R+SK+T + + G +++C +PS
Sbjct: 1 AKNINKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPS 56
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 9/55 (16%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSER 55
+A T N+ SSRSHS+F+I + Q +++ ++ LS K L LVDLAGSE+
Sbjct: 192 VAVTNMNEHSSRSHSIFLINIKQE--NVETEKKLSGK-------LYLVDLAGSEK 237
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 74 NNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPS 129
N SL L + L E GT P+R+SK+T + + G +++C +PS
Sbjct: 1 NKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPS 52
>pdb|1W79|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Y|A Chain A, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|B Chain B, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|C Chain C, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|D Chain D, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|2VGJ|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2XLN|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
Length = 489
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 42 VSQLSLVDLA-GSERGSRTHVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTN---R 97
VS + +VD A G E SR G++L A N+ L T LEVL + GT
Sbjct: 22 VSGVVVVDTATGEELYSRD---GGEQLLPASNMK--LFTAAAALEVLGADHSFGTEVAAE 76
Query: 98 SPPFRESKLTHLFKTYFTGEGD 119
S P R ++ L Y G GD
Sbjct: 77 SAPGRRGEVQDL---YLVGRGD 95
>pdb|2WKE|A Chain A, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|B Chain B, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|C Chain C, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|D Chain D, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2XDM|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XK1|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2Y4A|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
Length = 466
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 42 VSQLSLVDLA-GSERGSRTHVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTN---R 97
VS + +VD A G E SR G++L A N+ L T LEVL + GT
Sbjct: 22 VSGVVVVDTATGEELYSRD---GGEQLLPASNMK--LFTAAAALEVLGADHSFGTEVAAE 76
Query: 98 SPPFRESKLTHLFKTYFTGEGD 119
S P R ++ L Y G GD
Sbjct: 77 SAPGRRGEVQDL---YLVGRGD 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,220,367
Number of Sequences: 62578
Number of extensions: 156233
Number of successful extensions: 505
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 60
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)