Query psy3920
Match_columns 153
No_of_seqs 103 out of 1034
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:46:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 4.9E-46 1.1E-50 311.7 12.0 140 1-152 199-338 (574)
2 cd01373 KISc_KLP2_like Kinesin 100.0 6.1E-44 1.3E-48 287.8 15.7 140 1-150 198-337 (337)
3 KOG0243|consensus 100.0 4.4E-45 9.6E-50 318.4 9.7 139 1-152 254-392 (1041)
4 KOG0245|consensus 100.0 5.5E-44 1.2E-48 308.8 11.0 144 1-151 204-349 (1221)
5 cd01368 KISc_KIF23_like Kinesi 100.0 9.1E-43 2E-47 281.7 15.0 145 1-148 200-345 (345)
6 cd01370 KISc_KIP3_like Kinesin 100.0 1.4E-42 2.9E-47 280.0 15.5 140 1-150 199-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 1.4E-42 3.1E-47 305.9 14.4 145 1-152 292-436 (1320)
8 KOG0240|consensus 100.0 5.6E-43 1.2E-47 288.9 8.2 138 1-153 197-334 (607)
9 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.5E-41 1.4E-45 271.9 15.4 145 1-152 204-351 (356)
10 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.5E-40 3.3E-45 269.3 14.9 139 1-152 207-345 (352)
11 KOG0242|consensus 100.0 1E-41 2.2E-46 293.4 8.5 136 1-151 197-332 (675)
12 cd01371 KISc_KIF3 Kinesin moto 100.0 1.7E-40 3.6E-45 267.4 14.9 138 1-150 196-333 (333)
13 cd01372 KISc_KIF4 Kinesin moto 100.0 3.3E-40 7.2E-45 266.2 14.8 147 1-151 194-341 (341)
14 cd01376 KISc_KID_like Kinesin 100.0 2.4E-40 5.2E-45 265.1 13.8 130 1-148 190-319 (319)
15 cd01375 KISc_KIF9_like Kinesin 100.0 3.3E-40 7.2E-45 265.8 14.4 135 1-148 200-334 (334)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.3E-40 9.3E-45 264.1 14.0 135 1-150 191-325 (325)
17 cd01367 KISc_KIF2_like Kinesin 100.0 3.4E-40 7.3E-45 264.6 13.1 130 1-148 193-322 (322)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.3E-39 2.9E-44 261.0 15.7 138 1-150 184-321 (321)
19 cd01366 KISc_C_terminal Kinesi 100.0 2.9E-39 6.2E-44 259.7 14.0 136 1-152 193-328 (329)
20 PF00225 Kinesin: Kinesin moto 100.0 1.2E-38 2.7E-43 256.2 11.1 141 1-150 195-335 (335)
21 KOG0241|consensus 100.0 6.7E-38 1.4E-42 269.3 12.8 145 1-152 208-353 (1714)
22 smart00129 KISc Kinesin motor, 100.0 3.6E-37 7.8E-42 247.9 15.1 140 1-152 191-330 (335)
23 KOG0239|consensus 100.0 4.5E-38 9.8E-43 270.2 9.1 135 1-151 507-641 (670)
24 KOG0246|consensus 100.0 2.2E-37 4.7E-42 255.9 12.2 131 2-150 410-541 (676)
25 cd00106 KISc Kinesin motor dom 100.0 1.3E-36 2.8E-41 243.9 14.6 135 2-148 194-328 (328)
26 KOG0247|consensus 100.0 1.2E-36 2.5E-41 257.1 11.0 142 1-151 296-437 (809)
27 cd01363 Motor_domain Myosin an 100.0 3.6E-36 7.8E-41 224.4 11.7 116 1-128 71-186 (186)
28 KOG0244|consensus 100.0 4.6E-38 1E-42 271.2 -0.1 139 1-152 181-319 (913)
29 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-32 2.8E-37 234.3 12.4 138 1-152 201-338 (568)
30 COG5059 KIP1 Kinesin-like prot 92.8 0.0099 2.2E-07 51.6 -3.1 73 2-88 494-566 (568)
31 KOG1882|consensus 63.8 14 0.0003 29.0 4.2 41 7-55 211-251 (293)
32 PF11114 Minor_capsid_2: Minor 55.4 8.2 0.00018 26.5 1.6 31 76-106 16-46 (112)
33 PF12726 SEN1_N: SEN1 N termin 33.0 39 0.00085 30.4 2.7 85 47-141 465-549 (727)
34 PF09807 DUF2348: Uncharacteri 30.2 46 0.001 25.9 2.4 24 105-128 34-57 (249)
35 PF14695 LINES_C: Lines C-term 22.5 1.5E+02 0.0033 16.3 3.6 31 77-113 6-36 (39)
36 KOG0463|consensus 21.9 44 0.00096 28.3 1.0 17 44-60 220-236 (641)
37 PF11069 DUF2870: Protein of u 21.7 89 0.0019 20.9 2.2 25 107-131 14-38 (98)
38 PF10890 DUF2741: Protein of u 20.8 72 0.0016 20.1 1.5 38 80-129 8-52 (72)
39 PF03564 DUF1759: Protein of u 20.3 41 0.0009 23.3 0.4 41 107-148 31-72 (145)
No 1
>KOG4280|consensus
Probab=100.00 E-value=4.9e-46 Score=311.71 Aligned_cols=140 Identities=41% Similarity=0.555 Sum_probs=128.2
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
||+|.+|+.|||||+||+|+|++.....+ +....+.|||+|||||||||..+++ +.|++++|+.+||+||++|
T Consensus 199 vgat~mn~~SsRSH~ift~~i~~~~~~~~------~~~~~~~~rlnlvDLagsEr~~~tg-a~G~rlkEa~~IN~SLs~L 271 (574)
T KOG4280|consen 199 VGATSMNEESSRSHAIFTIHIESSEKSDG------GLMSGRSSKLNLVDLAGSERQSKTG-AEGERLKEATNINLSLSAL 271 (574)
T ss_pred hhhccCCcccccceEEEEEEEEeecccCC------CccccccceeeeeeccchhhhcccC-ccchhhhhhcccchhHHHH
Confidence 68999999999999999999999332222 2345688999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
|+||.+|+++.+ .|||||||+||+||+|+|||||+|+|||||+|...+|+||++||+ ||+|+|.|+.
T Consensus 272 G~vI~aLvd~~~----~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLr-fA~Rak~I~n 338 (574)
T KOG4280|consen 272 GNVISALVDGSK----THIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLR-FAQRAKAIKN 338 (574)
T ss_pred HHHHHHHhcccc----CCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHH-HHHHHHHhhc
Confidence 999999998653 399999999999999999999999999999999999999999999 9999999975
No 2
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.1e-44 Score=287.76 Aligned_cols=140 Identities=41% Similarity=0.540 Sum_probs=126.8
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|+.|||||+||+|+|.+.....+. .....|+|+||||||||+..+.+ ..+.+++|+..||+||.+|
T Consensus 198 ~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~-------~~~~~s~l~~VDLAGSEr~~~~~-~~g~~~~E~~~IN~SL~~L 269 (337)
T cd01373 198 VAATSMNSESSRSHAVFTCTIESWEKKASS-------TNIRTSRLNLVDLAGSERQKDDG-AEGVRLKEAKNINKSLSTL 269 (337)
T ss_pred cccCcCCCCCCCccEEEEEEEEEeecCCCC-------CcEEEEEEEEEECCCCCcccccC-CccHhhhhhccccHHHHHH
Confidence 478999999999999999999987643321 24577999999999999999998 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
++||.+|++... .++.|||||+|+||+||+|+|+|+|+|+||+||||+..+++||++||+ ||+|+|.|
T Consensus 270 ~~vi~aL~~~~~-~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~-fa~rak~I 337 (337)
T cd01373 270 GHVIMALVDVAH-GKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLK-FAQRAKLI 337 (337)
T ss_pred HHHHHHHHhhcc-CCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHH-HHHHhhcC
Confidence 999999987543 235899999999999999999999999999999999999999999999 99999987
No 3
>KOG0243|consensus
Probab=100.00 E-value=4.4e-45 Score=318.38 Aligned_cols=139 Identities=38% Similarity=0.547 Sum_probs=130.6
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+|+|.+|++|||||+||+|+|...+...+|+. .+..|||++|||||||.+.+.| +.+.|-+|++.||+||.+|
T Consensus 254 tAaTl~N~~SSRSHsIFsItvhike~t~~gee------lvK~GKLNLVDLAGSENI~RSG-A~~~RArEAG~INqSLLTL 326 (1041)
T KOG0243|consen 254 TAATLMNDQSSRSHSIFSITVHIKENTPEGEE------LVKIGKLNLVDLAGSENISRSG-ARNGRAREAGEINQSLLTL 326 (1041)
T ss_pred HHHHHhhhhccccceEEEEEEEEecCCCcchh------hHhhcccceeeccccccccccc-cccchhHHhhhhhHHHHHH
Confidence 57899999999999999999999888777664 4578999999999999999999 8888999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
|+||.||.+.. .|||||+|||||||||+|||..||+|||||||+..+++||++||. ||.|||-|++
T Consensus 327 GRVInALVe~s-----~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLE-YA~RAKnIkN 392 (1041)
T KOG0243|consen 327 GRVINALVEHS-----GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLE-YAHRAKNIKN 392 (1041)
T ss_pred HHHHHHHHccC-----CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHH-HHHHhhhccC
Confidence 99999999866 889999999999999999999999999999999999999999999 9999999975
No 4
>KOG0245|consensus
Probab=100.00 E-value=5.5e-44 Score=308.78 Aligned_cols=144 Identities=40% Similarity=0.527 Sum_probs=132.6
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
||+|.+|+.|||||+||+|...|...+.++. .....+|++++||||||||....+ +.|++++|+..||+||.+|
T Consensus 204 tAATnMNdtSSRSHaVFtIvftQk~~~~~~~-----l~sek~SKIsLVDLAGSERasstG-a~G~RLKEGa~INKSLtTL 277 (1221)
T KOG0245|consen 204 TAATNMNDTSSRSHAVFTIVFTQKKHDQDTG-----LDSEKVSKISLVDLAGSERASSTG-ANGDRLKEGANINKSLTTL 277 (1221)
T ss_pred hhhhccccccccceeEEEEEEEeeeccccCC-----CcceeeeeeeEEeccCcccccccC-CCccchhcccccchHHHHH
Confidence 5899999999999999999999988765432 346689999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhc--CCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q psy3920 81 RTCLEVLRENQQ--QGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCE 151 (153)
Q Consensus 81 ~~vi~aL~~~~~--~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~ 151 (153)
|.||.||++.++ ..+..+||||||-|||||++.||||+||.|||++||.+-||+|||+||| ||.|||+|.
T Consensus 278 GkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLR-YAdRAK~Iv 349 (1221)
T KOG0245|consen 278 GKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLR-YADRAKQIV 349 (1221)
T ss_pred HHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHH-HhhHhhhhh
Confidence 999999999774 2344699999999999999999999999999999999999999999999 999999996
No 5
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=9.1e-43 Score=281.70 Aligned_cols=145 Identities=66% Similarity=0.924 Sum_probs=129.5
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|.+|||||+||+|+|.+.+...++. ..........|+|+||||||||+..+.+ ..+.+++|+..||+||.+|
T Consensus 200 ~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~aL 277 (345)
T cd01368 200 VAGTKLNRESSRSHSVFTIKLVQAPGDSDGD-VDQDKDQITVSQLSLVDLAGSERTSRTQ-NTGERLKEAGNINTSLMTL 277 (345)
T ss_pred eccccCcCCCCCceEEEEEEEEEeccCcccc-cccCCCceEEEEEEEEeccccccccccc-ccchhhhhhhhhhHHHHHH
Confidence 4689999999999999999999987654333 1123345678999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHhhcCC-CCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q psy3920 81 RTCLEVLRENQQQG-TNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAH 148 (153)
Q Consensus 81 ~~vi~aL~~~~~~~-~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~ 148 (153)
++||.+|.+.+... ...|||||+|+||+||+|+|+|+|+++||+||||...+++||++||+ ||.+|+
T Consensus 278 ~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~-fa~~a~ 345 (345)
T cd01368 278 GKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMK-FSAIAQ 345 (345)
T ss_pred HHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHH-HHHhcC
Confidence 99999999876544 67899999999999999999999999999999999999999999999 999875
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.4e-42 Score=280.02 Aligned_cols=140 Identities=39% Similarity=0.559 Sum_probs=127.3
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|..|||||+||+|+|.+.+...+. ......|+|+|||||||||..+.+ ..+.+++|+..||+||.+|
T Consensus 199 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~------~~~~~~s~l~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~~L 271 (338)
T cd01370 199 QEPTEANATSSRSHAVLQITVRQKDRTASI------NQQVRIGKLSLIDLAGSERASATN-NRGQRLKEGANINRSLLAL 271 (338)
T ss_pred cccccccCccCcceEEEEEEEEEEecCCCC------CCcEEEEEEEEEECCCCccccccC-CCCccccccchhhHHHHHH
Confidence 468999999999999999999998764321 234578999999999999999988 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
++||.+|+.++. ...|||||+|+||+||+|+|||+|+++||+||||...+++||++||+ ||+|||.|
T Consensus 272 ~~vi~~L~~~~~--~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~-fa~ra~~I 338 (338)
T cd01370 272 GNCINALVDGKK--KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLK-YANRAKNI 338 (338)
T ss_pred HHHHHHHHhccC--CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHH-HHHHhccC
Confidence 999999998653 34799999999999999999999999999999999999999999999 99999986
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=305.93 Aligned_cols=145 Identities=37% Similarity=0.520 Sum_probs=130.5
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+|+|.+|..|||||+||+|+|.+...... .+......|+|+|||||||||....+ +.+.+++|+..||+||++|
T Consensus 292 tasT~mN~~SSRSHaIFtI~Ves~~k~~~-----dg~ss~r~SkLnLVDLAGSER~kkTg-a~G~RLkEA~~INKSLsaL 365 (1320)
T PLN03188 292 TGATSINAESSRSHSVFTCVVESRCKSVA-----DGLSSFKTSRINLVDLAGSERQKLTG-AAGDRLKEAGNINRSLSQL 365 (1320)
T ss_pred eccCCCCCccCCCceeEEEEEEEeecccC-----CCCcceEEEEEEEEECCCchhccccC-cccHHHHHHHHHhHHHHHH
Confidence 57899999999999999999988654321 12234567999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
++||.+|+.....++..|||||+|+||+||+|+|||+|+|+|||||||...+++||++||+ ||+|+|.|+.
T Consensus 366 GnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLr-FAsRAK~IKN 436 (1320)
T PLN03188 366 GNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLR-FAQRAKAIKN 436 (1320)
T ss_pred HHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHH-HHHHHhhcCc
Confidence 9999999986655566899999999999999999999999999999999999999999999 9999999975
No 8
>KOG0240|consensus
Probab=100.00 E-value=5.6e-43 Score=288.90 Aligned_cols=138 Identities=38% Similarity=0.507 Sum_probs=129.4
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
|+.|.+|.+|||||.||+|+|.|.+.++. ....|+|++|||||||+..+.+ +.|..+.|+++||+||.+|
T Consensus 197 va~t~mn~~sSRSHsIF~i~VkQ~n~e~~---------~~~~gkLyLVDLaGSEkvsKtg-a~g~vleEaK~INkSLsaL 266 (607)
T KOG0240|consen 197 VAVTNMNEHSSRSHSIFLIHVKQENVEDK---------RKLSGKLYLVDLAGSEKVSKTG-AEGAVLEEAKNINKSLSAL 266 (607)
T ss_pred hhhccccccccccceEEEEEEEeccccch---------hhccccEEEEEcccccccCCCC-ccchhHHHHhhhhhhHHHH
Confidence 57899999999999999999999886554 3578999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccC
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEKM 153 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~~ 153 (153)
|+||++|+++. +.|||||||+|||+|+|+|||||+|.+|.|++|+..+-.||.+||+ |+.||+.|+.+
T Consensus 267 gnvI~aLa~g~----~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~-fg~rak~ikN~ 334 (607)
T KOG0240|consen 267 GNVINALAEGP----KSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLR-FGNRAKTIKNT 334 (607)
T ss_pred HHHHHHHhcCC----CCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchh-hccccccccch
Confidence 99999999864 4799999999999999999999999999999999999999999999 99999999864
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.5e-41 Score=271.89 Aligned_cols=145 Identities=41% Similarity=0.544 Sum_probs=130.5
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|.+|||||+||+|+|.+.+.+... .......|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|
T Consensus 204 ~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~-----~~~~~~~s~l~~VDLAGsEr~~~~~-~~~~~~~E~~~IN~SL~aL 277 (356)
T cd01365 204 TASTNMNDTSSRSHAVFTIVLTQKKLDKET-----DLTTEKVSKISLVDLAGSERASSTG-AEGDRLKEGSNINKSLTTL 277 (356)
T ss_pred ccCCCCCCCcCCceEEEEEEEEEEecccCC-----CCCceEEEEEEeeeccccccccccc-ccchhhHHHHHHhHHHHHH
Confidence 468999999999999999999997765321 2235578999999999999999998 8899999999999999999
Q ss_pred HHHHHHHHHhhcC---CCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQ---GTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~---~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
++||.+|+.++.. ..+.|||||+|+||++|+|+|+|+++++||+||+|...+++||++||+ ||+|++.|+.
T Consensus 278 ~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~-fa~~~~~i~~ 351 (356)
T cd01365 278 GKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLR-YADRAKKIVN 351 (356)
T ss_pred HHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHH-HHHHHhhccC
Confidence 9999999986543 345899999999999999999999999999999999999999999999 9999999975
No 10
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.5e-40 Score=269.34 Aligned_cols=139 Identities=39% Similarity=0.566 Sum_probs=126.8
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|+.|||||+||+|+|.+.+....+. .....|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|
T Consensus 207 ~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~------~~~~~s~l~~VDLAGsE~~~~~~-~~~~~~~e~~~iN~SL~~L 279 (352)
T cd01364 207 TAATLMNDQSSRSHSIFSITIHIKETTISGE------ELVKIGKLNLVDLAGSENIGRSG-AENKRAREAGNINQSLLTL 279 (352)
T ss_pred cccCcCCCCCCCCceEEEEEEEEeccCCCCC------ccEEEEEEEEEECCCcccccccc-CcchhhHHHhhhhHHHHHH
Confidence 3679999999999999999999977554332 23467999999999999999888 8889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
++||.+|+.+. .|+|||+|+||+||+|+|+|+|+++||+||||...+++||++||+ ||+|++.|++
T Consensus 280 ~~vi~al~~~~-----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~-~a~~~~~i~n 345 (352)
T cd01364 280 GRVINALVEKS-----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLE-YAHRAKNIKN 345 (352)
T ss_pred HHHHHHHHcCC-----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHH-HHHHHhhccC
Confidence 99999999754 689999999999999999999999999999999999999999999 9999999975
No 11
>KOG0242|consensus
Probab=100.00 E-value=1e-41 Score=293.42 Aligned_cols=136 Identities=38% Similarity=0.562 Sum_probs=126.2
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+|.|.+|+.|||||+||+|.|.+.....+ . ..++|+|||||||||..+++ +.|.++.|+..||+||.+|
T Consensus 197 ~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---------~-~~s~L~lIDLAGSERas~T~-~~G~RlkEG~~INrSLlaL 265 (675)
T KOG0242|consen 197 TGETNLNEQSSRSHAILRITVESRGREAS---------S-RVSKLNLIDLAGSERASRTG-NEGVRLKEGAHINRSLLAL 265 (675)
T ss_pred ccccccccccchhhheeeEEEEecccccc---------c-hhheehhhhhhhhhhhhhhh-ccceeccccchhhHHHHHH
Confidence 58999999999999999999999775433 1 66889999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCE 151 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~ 151 (153)
|+||.+|+++... .|||||||||||+|||+|||+|+|.|||||+|...+|+||.+||+ ||+|||.|+
T Consensus 266 gtVI~~Ls~~~~~---~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~-fAsrak~i~ 332 (675)
T KOG0242|consen 266 GTVINKLSEGKRP---RHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLK-FASRAKEIT 332 (675)
T ss_pred HHHHHHHcccccc---CCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHH-HHHHhhhcc
Confidence 9999999987433 599999999999999999999999999999999999999999999 999999986
No 12
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.7e-40 Score=267.36 Aligned_cols=138 Identities=38% Similarity=0.553 Sum_probs=125.4
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|++|||||+||+|+|++.+....+. .....|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|
T Consensus 196 ~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~------~~~~~s~L~~VDLAGsEr~~~~~-~~~~~~~E~~~iN~sL~~L 268 (333)
T cd01371 196 VGATNMNEDSSRSHSIFTITIECSEKGEDGE------NHIRVGKLNLVDLAGSERQSKTG-ATGDRLKEATKINLSLSAL 268 (333)
T ss_pred cccccccCCCCCCcEEEEEEEEEEeccCCCC------CcEEEEEEEEEECCCCCcccccC-CchhhhHhHhhhhhHHHHH
Confidence 4679999999999999999999987654222 34578999999999999998888 8889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
++||.+|++++ +.|+|||+|+||++|+|+|+|+|+++||+||+|...+++||++||+ ||+|+|.|
T Consensus 269 ~~vi~al~~~~----~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~-fa~r~r~I 333 (333)
T cd01371 269 GNVISALVDGK----STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLR-YANRAKNI 333 (333)
T ss_pred HHHHHHHHhCC----CCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHH-HHHHhhcC
Confidence 99999998743 2589999999999999999999999999999999999999999999 99999986
No 13
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.3e-40 Score=266.24 Aligned_cols=147 Identities=35% Similarity=0.513 Sum_probs=129.0
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCc-cccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQ-VLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMT 79 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~-~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~ 79 (153)
+++|.+|.+|||||+||+|+|.+......... ..........|+|+||||||+|+..+.+ ..+.+++|+..||+||.+
T Consensus 194 ~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~-~~~~~~~e~~~in~sl~a 272 (341)
T cd01372 194 TASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTG-ATGDRLKEGISINSGLLA 272 (341)
T ss_pred cccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCccccccc-CchhHhHHHHHHhHHHHH
Confidence 36799999999999999999999886422110 0012345678999999999999999888 889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q psy3920 80 LRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCE 151 (153)
Q Consensus 80 L~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~ 151 (153)
|++||.+|+.+++ +..|+|||+|+||+||+|+|+|+++++||+||||...+++||++||+ ||+|+|.||
T Consensus 273 L~~vi~al~~~~~--~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~-~a~~~~~ik 341 (341)
T cd01372 273 LGNVISALGDESK--KGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLK-YANRARNIK 341 (341)
T ss_pred HHHHHHHHHhcCC--CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHH-HHHHhccCC
Confidence 9999999998663 34799999999999999999999999999999999999999999999 999999986
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.4e-40 Score=265.12 Aligned_cols=130 Identities=35% Similarity=0.526 Sum_probs=120.5
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|..|||||+||+|+|.+...+ ....|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|
T Consensus 190 ~~~t~~n~~SSRSH~i~~i~v~~~~~~-----------~~~~s~l~~VDLAGsE~~~~~~-~~g~~~~e~~~iN~Sl~~L 257 (319)
T cd01376 190 VAATKLNDNSSRSHAVLRIKVTQPASN-----------IQLEGKLNLIDLAGSEDNRRTG-NEGIRLKESAAINSSLFVL 257 (319)
T ss_pred cccCcCCCccCCCeEEEEEEEEEECCC-----------ceEEEEEEEEECCCCCcccccC-CccchhhhhhhhhhhHHHH
Confidence 367999999999999999999887532 2477999999999999998888 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAH 148 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~ 148 (153)
++||.+|..+. .|+|||+|+||++|+|+|+|+|+|+||+||||...+++||++||+ ||+|+|
T Consensus 258 ~~vi~aL~~~~-----~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~-fa~r~~ 319 (319)
T cd01376 258 SKVVDALNKGL-----PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLN-FASRSK 319 (319)
T ss_pred HHHHHHHhcCC-----CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHH-HHHhhC
Confidence 99999998754 789999999999999999999999999999999999999999999 999986
No 15
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.3e-40 Score=265.76 Aligned_cols=135 Identities=38% Similarity=0.518 Sum_probs=123.3
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|++|||||+||+|+|.+.+.+.++ .....|+|+||||||+|+..+.+ ..+..++|++.||+||.+|
T Consensus 200 ~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~-------~~~~~s~l~~VDLAGsEr~~~~~-~~~~~~~e~~~iN~SL~~L 271 (334)
T cd01375 200 IAETSMNQASSRSHCIFTIHLESRSREAGS-------EVVRLSKLNLVDLAGSERVSKTG-VSGQVLKEAKYINKSLSFL 271 (334)
T ss_pred cccCcCcCCcCcCeEEEEEEEEEEecCCCC-------CceEEEEEEEEECCCCCcccccc-CchhhhhhhhhhhhhHHHH
Confidence 367999999999999999999998654432 24578999999999999999888 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAH 148 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~ 148 (153)
++||.+|++++ ..|+|||||+||++|+|+|+|+|+++||+||||...+++||++||+ ||+|++
T Consensus 272 ~~vi~~l~~~~----~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~-fa~r~~ 334 (334)
T cd01375 272 EQVINALSEKA----RTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLR-FAQRVA 334 (334)
T ss_pred HHHHHHHHhCC----CCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHH-HHHhcC
Confidence 99999999754 3689999999999999999999999999999999999999999999 999984
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.3e-40 Score=264.12 Aligned_cols=135 Identities=40% Similarity=0.568 Sum_probs=123.8
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|+.|||||+||+|+|.+.+.+.. ....|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|
T Consensus 191 ~~~t~~n~~ssRSH~i~~i~v~~~~~~~~---------~~~~s~l~~VDLAGsE~~~~~~-~~~~~~~e~~~in~sl~~L 260 (325)
T cd01369 191 VASTNMNEESSRSHSIFLITLKQENVETG---------SKKRGKLFLVDLAGSEKVSKTG-AEGQTLEEAKKINKSLSAL 260 (325)
T ss_pred cccCcCCCccccccEEEEEEEEEEecCCC---------CEEEEEEEEEECCCCCcccccC-CcchhHHHHHHHhHHHHHH
Confidence 36799999999999999999998764332 3478999999999999999888 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
++||.+|++++ ..|+|||+|+||++|+|+|+|+|+++||+||||...+++||++||+ ||+|+|.|
T Consensus 261 ~~vi~aL~~~~----~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~-~a~r~~~i 325 (325)
T cd01369 261 GNVINALTDGK----STHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLR-FGARAKTI 325 (325)
T ss_pred HHHHHHHHcCC----CCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHH-HHHHhhcC
Confidence 99999999754 2689999999999999999999999999999999999999999999 99999976
No 17
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.4e-40 Score=264.55 Aligned_cols=130 Identities=35% Similarity=0.551 Sum_probs=119.6
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|.+|..|||||+||+|+|.+... ....|+|+||||||+|+..+.....++++.|+..||+||.+|
T Consensus 193 ~~~t~~n~~SSRSH~i~~i~v~~~~~------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L 260 (322)
T cd01367 193 TGSTGANDQSSRSHAILQIILKNKKL------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLAL 260 (322)
T ss_pred cccCcCCCCcccceEEEEEEEEEecC------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHH
Confidence 46899999999999999999998653 336799999999999998877646788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAH 148 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~ 148 (153)
++||.+|+.++ .|+|||||+||++|+|+|+|+|+++||+||||...+++||++||+ ||+|+|
T Consensus 261 ~~vi~al~~~~-----~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~-fa~r~k 322 (322)
T cd01367 261 KECIRALASNK-----AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLR-YADRVK 322 (322)
T ss_pred HHHHHHHhcCC-----CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHH-HHHhhC
Confidence 99999999754 789999999999999999999999999999999999999999999 999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.3e-39 Score=260.95 Aligned_cols=138 Identities=35% Similarity=0.530 Sum_probs=124.6
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|..|++|||||+||+|+|.+.....+ .......|+|+||||||+|+..+.+ .+.+++|+..||+||.+|
T Consensus 184 ~~~t~~n~~ssRSH~i~~i~v~~~~~~~~------~~~~~~~s~l~~vDLAGsE~~~~~~--~~~~~~e~~~iN~Sl~~L 255 (321)
T cd01374 184 VGETDFNERSSRSHTIFQLTIESRERGDS------ESGTVRVSTLNLIDLAGSERASQTG--AGERRKEGSFINKSLLTL 255 (321)
T ss_pred cccCcCCCccccccEEEEEEEEEEecCCC------CCCcEEEEEEEEEECCCCCccccCC--CCccccccchhhhHHHHH
Confidence 36799999999999999999999875442 1234578999999999999988775 688999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
++||.+|++++. +.|+|||+|+||+||+|+|+|+++++||+||||...+++||++||+ ||+|++.|
T Consensus 256 ~~vi~al~~~~~---~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~-~a~r~~~i 321 (321)
T cd01374 256 GTVISKLSEGKN---SGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLK-FASRAKKV 321 (321)
T ss_pred HHHHHHHHhcCC---CCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHH-HHHHHhcC
Confidence 999999998653 4789999999999999999999999999999999999999999999 99999976
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.9e-39 Score=259.67 Aligned_cols=136 Identities=38% Similarity=0.525 Sum_probs=125.2
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|..|+.|||||+||+|+|.+.+... .....|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|
T Consensus 193 ~~~t~~n~~sSRsH~i~~i~v~~~~~~~---------~~~~~s~l~~VDLaGsE~~~~~~-~~~~~~~e~~~in~Sl~~L 262 (329)
T cd01366 193 VASTNMNEHSSRSHAVFQLKIRGTNLQT---------GEQTRGKLNLVDLAGSERLKKSG-ATGDRLKEAQAINKSLSAL 262 (329)
T ss_pred cccccccCCCCCccEEEEEEEEEEcCCC---------CcEEEEEEEEEECCCCccccccc-ccchhhHhHhhhhhHHHHH
Confidence 3678999999999999999999876532 23478999999999999999888 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
++||.+|+.+ +.|+|||+|+||++|+|+|+|+++++||+||||...+++||++||+ ||+|++.|+.
T Consensus 263 ~~vl~~l~~~-----~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~-~a~~~~~i~~ 328 (329)
T cd01366 263 GDVISALRSK-----DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLR-FASRVRSVEL 328 (329)
T ss_pred HHHHHHHhcC-----CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHH-HHHHhhcccC
Confidence 9999999875 3789999999999999999999999999999999999999999999 9999999863
No 20
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.2e-38 Score=256.21 Aligned_cols=141 Identities=41% Similarity=0.614 Sum_probs=124.6
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
++.|.+|..|||||+||+|+|.+.+...+... .....|+|+||||||+|+..+.....+.+.+|+..||+||.+|
T Consensus 195 ~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-----~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L 269 (335)
T PF00225_consen 195 TASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-----ESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSAL 269 (335)
T ss_dssp CTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-----EEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc-----cceeecceeeeecccccccccccccccccccccceecchhhhh
Confidence 36789999999999999999999987654321 1357899999999999998888722477899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
++||.+|+.+ ..+.|+|||+|+||+||+|+|+|+|+++||+||+|...+++||++||+ ||.++|.|
T Consensus 270 ~~vi~~L~~~---~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~-fa~~~~~I 335 (335)
T PF00225_consen 270 GNVIRALAQG---SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLR-FASRAREI 335 (335)
T ss_dssp HHHHHHHHCT---TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHH-HHHHHTTE
T ss_pred hhhHhhhhcc---ccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHH-HHHHHcCC
Confidence 9999999987 234789999999999999999999999999999999999999999999 99999987
No 21
>KOG0241|consensus
Probab=100.00 E-value=6.7e-38 Score=269.31 Aligned_cols=145 Identities=42% Similarity=0.591 Sum_probs=132.1
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
|++|++|+.|||||++|.|.|.|.-.+.... .....+|||.+|||||+||..+.+ +.+.+++|+.+||+||.+|
T Consensus 208 vaatnmn~EssrsHaVFslvvtQ~l~D~ktg-----~SgeKvsklslVDLAgserasktg-a~g~rlkegsNinkSLttL 281 (1714)
T KOG0241|consen 208 VAATNMNEESSRSHAVFSLVVTQTLYDLKTG-----HSGEKVSKLSLVDLAGSERASKTG-AAGSRLKEGSNINKSLTTL 281 (1714)
T ss_pred eeeecccccccccceeEEEEEeeEEeccccC-----cchhheeeeeEEEecccccccccc-chhhhhhhcCCcchhhHHH
Confidence 5789999999999999999999987765432 234478999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQ-GTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~-~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
+.||.+|++.... +++++||||||-||+||+|.|||||+|+||+||||..++|+|||+||| ||.|||.|.+
T Consensus 282 glVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLR-YadrAkrIvN 353 (1714)
T KOG0241|consen 282 GLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLR-YADRAKRIVN 353 (1714)
T ss_pred HHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHH-HHHHHHHhhc
Confidence 9999999985533 356899999999999999999999999999999999999999999999 9999999974
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.6e-37 Score=247.92 Aligned_cols=140 Identities=41% Similarity=0.571 Sum_probs=126.5
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+++|..|+.|||||+||+|+|.+...... ......|+|+||||||+|+....+ ..+.+++|+..||+||.+|
T Consensus 191 ~~~t~~n~~ssRsH~i~~l~v~~~~~~~~-------~~~~~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L 262 (335)
T smart00129 191 VAATKMNEESSRSHAVFTITVESKIKNSS-------SGSGKASKLNLVDLAGSERASKTG-AEGDRLKEAGNINKSLSAL 262 (335)
T ss_pred cccCCCCCCCCcceEEEEEEEEEEecCCC-------CCCEEEEEEEEEECCCCCcccccc-ChhHHHHhhchhhhHHHHH
Confidence 36799999999999999999998744322 234578999999999999999888 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
++||.+|+++. ++.|+|||+|+||++|+++|+|+++++||+||+|...+++||++||+ ||+++++|+.
T Consensus 263 ~~~l~~l~~~~---~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~-~a~~~~~i~~ 330 (335)
T smart00129 263 GNVINALADGQ---KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLR-FASRAKEIKN 330 (335)
T ss_pred HHHHHHHHhcC---CCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHH-HHHHHhhccc
Confidence 99999999753 34789999999999999999999999999999999999999999999 9999999974
No 23
>KOG0239|consensus
Probab=100.00 E-value=4.5e-38 Score=270.25 Aligned_cols=135 Identities=37% Similarity=0.502 Sum_probs=125.1
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
||+|..|++|||||+||+++|...+...+ ....+.|+|||||||||+.+.+ ..|++++|++.||+||++|
T Consensus 507 v~~T~~Ne~SSRSH~v~~v~v~g~~~~t~---------~~~~g~l~LVDLAGSER~~~s~-~tG~RlkE~Q~INkSLS~L 576 (670)
T KOG0239|consen 507 VASTASNERSSRSHLVFRVRIRGINELTG---------IRVTGVLNLVDLAGSERVSKSG-VTGERLKEAQNINKSLSAL 576 (670)
T ss_pred ccccccchhhhccceEEEEEEeccccCcc---------cccccceeEeecccCcccCcCC-CchhhhHHHHHhchhhhhh
Confidence 68999999999999999999987753332 3467889999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCE 151 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~ 151 (153)
++||.||+... .|||||+||||+||+|+|||++||+|+++|||...++.||+.+|+ ||.|++.++
T Consensus 577 gdVi~AL~~k~-----~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~-FA~rv~~~~ 641 (670)
T KOG0239|consen 577 GDVISALASKR-----SHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLR-FATRVRSVE 641 (670)
T ss_pred HHHHHHHhhcC-----CCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccc-hHHHhhcee
Confidence 99999999744 899999999999999999999999999999999999999999999 999999875
No 24
>KOG0246|consensus
Probab=100.00 E-value=2.2e-37 Score=255.89 Aligned_cols=131 Identities=35% Similarity=0.519 Sum_probs=120.0
Q ss_pred CcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHHH
Q psy3920 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTLR 81 (153)
Q Consensus 2 ~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L~ 81 (153)
|.|..|+.|||||+||+|.+.+.. ....++++.||||||+||..++..+..+.+.|+..||+||++|.
T Consensus 410 G~TsANs~SSRSHAvfQIilr~~~------------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALK 477 (676)
T KOG0246|consen 410 GQTSANSNSSRSHAVFQIILRKHG------------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALK 477 (676)
T ss_pred CcccCcccccccceeEeeeeecCC------------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHH
Confidence 679999999999999999996532 13477999999999999998887677788999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q psy3920 82 TCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTG-EGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLC 150 (153)
Q Consensus 82 ~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g-~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i 150 (153)
+||+||..++ .|+|||.||||++|+|+|-| +++|+||+||||.....+.||+||| ||.|+|..
T Consensus 478 ECIRaLg~nk-----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLR-YAdRVKeL 541 (676)
T KOG0246|consen 478 ECIRALGRNK-----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLR-YADRVKEL 541 (676)
T ss_pred HHHHHhcCCC-----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHH-HHHHHHhh
Confidence 9999998765 78999999999999999988 9999999999999999999999999 99999975
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.3e-36 Score=243.86 Aligned_cols=135 Identities=43% Similarity=0.635 Sum_probs=123.6
Q ss_pred CcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHHH
Q psy3920 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTLR 81 (153)
Q Consensus 2 ~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L~ 81 (153)
++|..|+.|||||+||+|+|.+.+....+. ....|+|+||||||+|+....+ ..+.++.|+..||+||.+|+
T Consensus 194 ~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-------~~~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~ 265 (328)
T cd00106 194 ASTAMNERSSRSHAIFTIHVEQRNTTNDGR-------SIKSSKLNLVDLAGSERAKKTG-AEGDRLKEAKNINKSLSALG 265 (328)
T ss_pred ccCcCCCCcCcCcEEEEEEEEEEecCCCCc-------cEEEEEEEEEECCCCCcccccC-CchhhhHhHHhhhhhHHHHH
Confidence 578999999999999999999987654321 3578999999999999999888 88999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q psy3920 82 TCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAH 148 (153)
Q Consensus 82 ~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~ 148 (153)
+||.+|+.++. ..|+|||+|+||+||+|+|+|+++++||+||+|...+++||++||+ ||+|+|
T Consensus 266 ~vl~~l~~~~~---~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~-~a~r~~ 328 (328)
T cd00106 266 NVISALSSGQK---KKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLR-FASRAK 328 (328)
T ss_pred HHHHHHHhcCC---CCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHH-HHHhcC
Confidence 99999998653 3789999999999999999999999999999999999999999999 999985
No 26
>KOG0247|consensus
Probab=100.00 E-value=1.2e-36 Score=257.12 Aligned_cols=142 Identities=63% Similarity=0.931 Sum_probs=133.2
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
+|+|.+|+.|||||+||+|.|.+...+. +...+.+|.|.|||||||||..++. +.|.+++|+++||.||.+|
T Consensus 296 ~asT~lN~~SSRSHsVFtIkl~q~~~~~-------~s~~i~vSqlsLvDLAGSERt~rtq-~sG~RLrEagNINtSLmTL 367 (809)
T KOG0247|consen 296 VASTKLNANSSRSHSVFTIKLVQAPRSQ-------DSNQITVSQLSLVDLAGSERTNRTQ-NSGERLREAGNINTSLMTL 367 (809)
T ss_pred hhheeccccccccceeEEEEeeeccccc-------ccCceeEEeeeeeecccchhccccc-chhHHHHhhccccHHHHHH
Confidence 5899999999999999999999987653 2346789999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCE 151 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~ 151 (153)
++||.+|..+++...+.+|||||||||++++.+|.|..+..||+||.|..++|+|+++.|. ||.-+..|.
T Consensus 368 g~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlk-Faeiaq~v~ 437 (809)
T KOG0247|consen 368 RRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLK-FAEIAQEVE 437 (809)
T ss_pred HHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHH-HHHhccccc
Confidence 9999999999998888999999999999999999999999999999999999999999998 999887764
No 27
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.6e-36 Score=224.39 Aligned_cols=116 Identities=41% Similarity=0.560 Sum_probs=105.1
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
++.|.+|+.|||||+||+|++.+.+...++ ......++|+||||||+|+..+.+ ..+++++|+..||+||.+|
T Consensus 71 ~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~------~~~~~~s~l~lVDLAGsE~~~~~~-~~~~~~~e~~~in~sl~~L 143 (186)
T cd01363 71 TAATAMNEHSSRSHSVFRIHFGGKNALASA------TEQPKVGKINLVDLAGSERIDFSG-AEGSRLTETANINKSLSTL 143 (186)
T ss_pred ccccCCCCccCcccEEEEEEEEEeecCCCC------ccceeeeeEEEEEccccccccccC-CchhhHHHHHHHhhHHHHH
Confidence 467999999999999999999998765432 234578999999999999999888 8889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCC
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNP 128 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp 128 (153)
++||.+|++++ .|+|||||+||++|+|+|+|+|+++||+||||
T Consensus 144 ~~~i~~l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 144 GNVISALAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHHHhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 99999999754 68999999999999999999999999999998
No 28
>KOG0244|consensus
Probab=100.00 E-value=4.6e-38 Score=271.20 Aligned_cols=139 Identities=39% Similarity=0.557 Sum_probs=128.3
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
|++|.+|+.|||||+||++.+++...... .....++|+|||||||||..++. +.|.+++|+..||.+|++|
T Consensus 181 vasTnMN~qssRshAifti~lkq~kk~~~--------~s~~~sKlhlVDLAGSER~kkT~-a~gdrlKEgInIN~gLL~L 251 (913)
T KOG0244|consen 181 VASTNMNAQSSRSHAIFTITLKQRKKLSK--------RSSFCSKLHLVDLAGSERVKKTK-AEGDRLKEGININGGLLAL 251 (913)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHhhc--------cchhhhhhheeeccccccccccc-cchhhhhhccCcchHHHHH
Confidence 57899999999999999999998664332 23467999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
|+||.||...++ ..|+|||+|+||++|+|+||||++++||+||||...+.+||++||+ ||.|+++||.
T Consensus 252 gnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~-ya~Rak~ikn 319 (913)
T KOG0244|consen 252 GNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR-YADRAKQIKN 319 (913)
T ss_pred HHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH-HhhHHHHhcc
Confidence 999999998775 3799999999999999999999999999999999999999999999 9999999974
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-32 Score=234.29 Aligned_cols=138 Identities=41% Similarity=0.577 Sum_probs=125.4
Q ss_pred CCcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHH
Q psy3920 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTL 80 (153)
Q Consensus 1 ~~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L 80 (153)
++.|.+|+.|||||++|++++.+.....+. ...+++.+|||||+|+....+ ..+.++.|+..||+||.+|
T Consensus 201 ~~~te~n~~ssRshsi~~i~~~~~~~~~~~---------~~~~~l~lvDLagSE~~~~~~-~~~~r~~E~~~iN~sLl~L 270 (568)
T COG5059 201 TASTEINDESSRSHSIFQIELASKNKVSGT---------SETSKLSLVDLAGSERAARTG-NRGTRLKEGASINKSLLTL 270 (568)
T ss_pred cccchhccccccceEEEEEEEEEeccCccc---------eecceEEEEeeccccccchhh-cccchhhhhhhhHhhHHHH
Confidence 467999999999999999999998765442 233789999999999999987 8899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Q psy3920 81 RTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGATNFEIRAHLCEK 152 (153)
Q Consensus 81 ~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~~~a~r~~~i~~ 152 (153)
++||.+|.... +..|+|||+|+||++|+++|||+|++.+||||+|...+++||.+||+ ||.|++.|+.
T Consensus 271 g~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~-~a~rak~I~~ 338 (568)
T COG5059 271 GNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLK-FASRAKSIKN 338 (568)
T ss_pred HHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHH-HHHHHhhcCC
Confidence 99999999742 23789999999999999999999999999999999999999999999 9999999875
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=92.78 E-value=0.0099 Score=51.60 Aligned_cols=73 Identities=41% Similarity=0.465 Sum_probs=58.6
Q ss_pred CcCCCCCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCCccccccccccccccccccchhHHHHH
Q psy3920 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTLR 81 (153)
Q Consensus 2 ~~t~~n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L~ 81 (153)
+++..|.+++|+|.+|+.+......-.+ ... ++.||+||+|+. ... .-+.++++...+|++|..++
T Consensus 494 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~---------~~~---~n~~~~~~~e~~-~s~-~~~~~l~~~~~~~k~l~~~~ 559 (568)
T COG5059 494 ASTKLNLRSSRSHSKFRDHLNGSNSSTK---------ELS---LNQVDLAGSERK-VSQ-SVGELLRETQSLNKSLSSLG 559 (568)
T ss_pred cccchhhhhcccchhhhhcccchhhhhH---------HHH---hhhhhccccccc-hhh-hhHHHHHhhHhhhhccccch
Confidence 4578899999999999888754332111 001 799999999999 777 88999999999999999999
Q ss_pred HHHHHHH
Q psy3920 82 TCLEVLR 88 (153)
Q Consensus 82 ~vi~aL~ 88 (153)
.++.++.
T Consensus 560 d~~~~~~ 566 (568)
T COG5059 560 DVIHALG 566 (568)
T ss_pred hhhhhcc
Confidence 9998763
No 31
>KOG1882|consensus
Probab=63.85 E-value=14 Score=29.03 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.9
Q ss_pred CCcCCcCeeEEEEEEEeeecCCCCCccccCCceeeeeeeEEEecCCCCC
Q psy3920 7 NKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSER 55 (153)
Q Consensus 7 n~~SSRSH~if~l~i~~~~~~~~~~~~~~~~~~~~~s~L~~VDLaGse~ 55 (153)
...+|+-|++|++.......+++. .-..-+.+++||..+.-
T Consensus 211 hpScSKQHaviQyR~v~~~r~dGt--------~grrvkpYiiDLgS~Ng 251 (293)
T KOG1882|consen 211 HPSCSKQHAVIQYRLVEFTRADGT--------VGRRVKPYIIDLGSGNG 251 (293)
T ss_pred CccccccceeeeeeecccccCCCc--------cceeeeeEEEecCCCCc
Confidence 367899999999999887665442 33567789999987654
No 32
>PF11114 Minor_capsid_2: Minor capsid protein; InterPro: IPR021080 This entry represents a family of minor capsid proteins found in a number of bacteriophages including Bacteriophage A118. The function of these proteins is not known.
Probab=55.36 E-value=8.2 Score=26.48 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCCchh
Q psy3920 76 SLMTLRTCLEVLRENQQQGTNRSPPFRESKL 106 (153)
Q Consensus 76 SL~~L~~vi~aL~~~~~~~~~~~vpyr~S~L 106 (153)
|+.+++++-.+|.+.-....+++||+++-.|
T Consensus 16 s~~~~~~~Q~~l~~qv~~~m~~YVP~~~G~L 46 (112)
T PF11114_consen 16 SPEALGRAQFALANQVLRDMNPYVPKDTGTL 46 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHccCCCCCCCCcc
Confidence 3344445555555444444558999995444
No 33
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=32.96 E-value=39 Score=30.38 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=62.0
Q ss_pred EEecCCCCCccccccccccccccccccchhHHHHHHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhhcCCCCeEEEEEEe
Q psy3920 47 LVDLAGSERGSRTHVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCV 126 (153)
Q Consensus 47 ~VDLaGse~~~~~~~~~~~~~~E~~~in~SL~~L~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~l~g~~~t~~i~~v 126 (153)
+-.++|-|...... .......+....|+.+..+.+.+..+-++- .-|..+.|..+++|. +.++.++-+-+
T Consensus 465 ~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rl-------s~~~~~~L~~l~~d~--~~~~~i~s~lf 534 (727)
T PF12726_consen 465 LSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERL-------SDFDPSHLKELLSDP--DAAQAIWSLLF 534 (727)
T ss_pred HHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHcCc--chhhHHHhhee
Confidence 34566777666554 444556677789999998877777776643 346778899999877 44677777779
Q ss_pred CCCCCCHHHHHHHHH
Q psy3920 127 NPSSDDYDENLIGAT 141 (153)
Q Consensus 127 sp~~~~~~eTl~tL~ 141 (153)
||..+-|+.+++-|+
T Consensus 535 sp~~~l~qaA~~llk 549 (727)
T PF12726_consen 535 SPDDDLYQAAQDLLK 549 (727)
T ss_pred CCChHHHHHHHHHHH
Confidence 999888888887775
No 34
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=30.16 E-value=46 Score=25.87 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.2
Q ss_pred hhHHhhhhhcCCCCeEEEEEEeCC
Q psy3920 105 KLTHLFKTYFTGEGDVRMIVCVNP 128 (153)
Q Consensus 105 ~LT~lL~d~l~g~~~t~~i~~vsp 128 (153)
-+.++|+.+|.++++++++++..|
T Consensus 34 Llh~~L~~~Lk~~~~V~fv~~~q~ 57 (249)
T PF09807_consen 34 LLHHFLSQYLKAGCKVCFVAFSQS 57 (249)
T ss_pred HHHHHHHHHhcCCCcEEEEEccCC
Confidence 468899999999999999999875
No 35
>PF14695 LINES_C: Lines C-terminus
Probab=22.46 E-value=1.5e+02 Score=16.33 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhh
Q psy3920 77 LMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTY 113 (153)
Q Consensus 77 L~~L~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~ 113 (153)
|..|..-|..|..+ .-.||.-++|.++|..+
T Consensus 6 l~~L~~aI~rL~~k------~LFPYN~~pLLrlL~~~ 36 (39)
T PF14695_consen 6 LIRLRLAIERLVRK------NLFPYNPSPLLRLLEQV 36 (39)
T ss_pred HHHHHHHHHHHHHC------CCCCCChHHHHHHHHHh
Confidence 44455556666542 45899999999998754
No 36
>KOG0463|consensus
Probab=21.90 E-value=44 Score=28.30 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=13.2
Q ss_pred eeEEEecCCCCCccccc
Q psy3920 44 QLSLVDLAGSERGSRTH 60 (153)
Q Consensus 44 ~L~~VDLaGse~~~~~~ 60 (153)
-++||||||-|+.-++.
T Consensus 220 viTFIDLAGHEkYLKTT 236 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTT 236 (641)
T ss_pred eEEEEeccchhhhhhee
Confidence 37999999999864443
No 37
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=21.74 E-value=89 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHhhhhhcCCCCeEEEEEEeCCCCC
Q psy3920 107 THLFKTYFTGEGDVRMIVCVNPSSD 131 (153)
Q Consensus 107 T~lL~d~l~g~~~t~~i~~vsp~~~ 131 (153)
...|.|++|-|-+|-+|+-+.+-..
T Consensus 14 ~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 14 GKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred CCcHHHhcCCCcceeEEEEeccCCC
Confidence 3568999999999999999887543
No 38
>PF10890 DUF2741: Protein of unknown function (DUF2741); InterPro: IPR020101 This entry represents subunit 8 of the Cytochrome b-c1 complex. The ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone. In plants, the b-c1 complex contains 10 subunits: 3 respiratory subunits, 2 core proteins and 5 low-molecular weight proteins.
Probab=20.83 E-value=72 Score=20.08 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCchhHHhhhhh-------cCCCCeEEEEEEeCCC
Q psy3920 80 LRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTY-------FTGEGDVRMIVCVNPS 129 (153)
Q Consensus 80 L~~vi~aL~~~~~~~~~~~vpyr~S~LT~lL~d~-------l~g~~~t~~i~~vsp~ 129 (153)
|.+|+.+| .||.+.-++.|.+|. +..|.-...+.++ |-
T Consensus 8 lkeVvY~L-----------SP~qq~Vm~GLwKDlp~ki~hk~~enwv~a~~~~~-p~ 52 (72)
T PF10890_consen 8 LKEVVYAL-----------SPFQQKVMPGLWKDLPKKIHHKFSENWVSATLFLV-PL 52 (72)
T ss_pred hhHheeee-----------ChhhhhhhhhhhhhcHHHHHHHHhhcceeeEEEee-ee
Confidence 55677777 488888888888886 3445444455555 63
No 39
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=20.34 E-value=41 Score=23.26 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHhhhhhcCCCCeEEEEEEeCCCCCCHHHHHHHHH-HHHHHHh
Q psy3920 107 THLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGAT-NFEIRAH 148 (153)
Q Consensus 107 T~lL~d~l~g~~~t~~i~~vsp~~~~~~eTl~tL~-~~a~r~~ 148 (153)
-.+|+.+|.|.++-++- .+-....+|++++..|+ .|+....
T Consensus 31 ~~~L~~~L~G~A~~~i~-~~~~~~~~Y~~a~~~L~~~yg~~~~ 72 (145)
T PF03564_consen 31 LNYLRSCLKGEAKELIR-GLPLSEENYEEAWELLEERYGNPRR 72 (145)
T ss_pred HHHHHHHhcchHHHHHH-cccccchhhHHHHHHHHHHhCCchH
Confidence 34589999998876654 44447799999999993 2655443
Done!