RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3920
(153 letters)
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 218 bits (556), Expect = 1e-71
Identities = 91/138 (65%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ESSRSHSVF I+LVQAP D GD V DK +TVSQLSLVDLAGSER SRT
Sbjct: 200 VAGTKLNRESSRSHSVFTIKLVQAPGDSDGD-VDQDKDQITVSQLSLVDLAGSERTSRTQ 258
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-PFRESKLTHLFKTYFTGEGD 119
+G+RL+EAGNIN SLMTL C+EVLRENQ G+ P+R+SKLTHLF+ YF GEG
Sbjct: 259 -NTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGK 317
Query: 120 VRMIVCVNPSSDDYDENL 137
RMIV VNP + DYDE L
Sbjct: 318 ARMIVNVNPCASDYDETL 335
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 167 bits (424), Expect = 9e-52
Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ESSRSH++F I + Q D + +L+LVDLAGSER S+T
Sbjct: 190 VASTNMNEESSRSHAIFTITVEQRNRD--------TDGSVKTGKLNLVDLAGSERASKTG 241
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G+RL+EA NIN SL L + L ENQ P+R+SKLT L + G
Sbjct: 242 AAGGRRLKEAANINKSLSALGNVINALAENQSS----HIPYRDSKLTRLLQDSLGGNSKT 297
Query: 121 RMIVCVNPSSDDYDENL 137
MI ++PS +Y+E L
Sbjct: 298 LMIANISPSDSNYEETL 314
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 152 bits (387), Expect = 4e-46
Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 11/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ESSRSH+VF I + Q + + S+L+LVDLAGSER +T
Sbjct: 192 AATKMNEESSRSHAVFTITVEQKIKNSSSGSGKA-------SKLNLVDLAGSERAKKTG- 243
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G RL+EAGNIN SL L + L ++ + R P+R+SKLT L + G
Sbjct: 244 AEGDRLKEAGNINKSLSALGNVINALAQHSKS---RHIPYRDSKLTRLLQDSLGGNSKTL 300
Query: 122 MIVCVNPSSDDYDENL 137
MI V+PSS + +E L
Sbjct: 301 MIANVSPSSSNLEETL 316
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 146 bits (371), Expect = 8e-44
Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 11/137 (8%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
A T N+ SSRSH++F I + Q G + S+L+LVDLAGSER +T
Sbjct: 193 TASTAMNERSSRSHAIFTIHVEQRNTTNDGRSI-------KSSKLNLVDLAGSERAKKTG 245
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G RL+EA NIN SL L + L Q+ + P+R+SKLT L + G
Sbjct: 246 -AEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPYRDSKLTRLLQDSLGGNSKT 301
Query: 121 RMIVCVNPSSDDYDENL 137
MI ++PSS++YDE L
Sbjct: 302 LMIANISPSSENYDETL 318
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 116 bits (293), Expect = 3e-32
Identities = 60/139 (43%), Positives = 79/139 (56%), Gaps = 9/139 (6%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N SSRSH+VF I L Q LD + D L+ ++ VS++SLVDLAGSER S T
Sbjct: 205 ASTNMNDTSSRSHAVFTIVLTQKKLDKETD--LTTEK---VSKISLVDLAGSERASSTG- 258
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTN-RSP--PFRESKLTHLFKTYFTGEG 118
A G RL+E NIN SL TL + L +N + +S P+R+S LT L K G
Sbjct: 259 AEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS 318
Query: 119 DVRMIVCVNPSSDDYDENL 137
MI ++P+ +Y+E L
Sbjct: 319 KTAMIATISPADINYEETL 337
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 108 bits (272), Expect = 3e-29
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+VF ++ ++ +LQ + T +L+LVDLAGSER ++
Sbjct: 194 ASTNMNEHSSRSHAVFQLK-IRG-TNLQTGEQ-------TRGKLNLVDLAGSERLKKSG- 243
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A+G RL+EA IN SL L + LR P+R SKLT+L + G
Sbjct: 244 ATGDRLKEAQAINKSLSALGDVISALRSKDSH-----VPYRNSKLTYLLQDSLGGNSKTL 298
Query: 122 MIVCVNPSSDDYDENL 137
M V ++P + E L
Sbjct: 299 MFVNISPLESNLSETL 314
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 108 bits (272), Expect = 3e-29
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 4 TLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVAS 63
T N++SSRSHS+F I + + ++ + + V +L+LVDLAGSER S+T A+
Sbjct: 199 TNMNEDSSRSHSIFTITIECS------EKGEDGENHIRVGKLNLVDLAGSERQSKTG-AT 251
Query: 64 GQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMI 123
G RL+EA IN SL L + L + G + P+R+SKLT L + G M
Sbjct: 252 GDRLKEATKINLSLSALGNVISALVD----GKSTHIPYRDSKLTRLLQDSLGGNSKTVMC 307
Query: 124 VCVNPSSDDYDENL 137
+ P+ +YDE L
Sbjct: 308 ANIGPADYNYDETL 321
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 106 bits (267), Expect = 2e-28
Identities = 54/136 (39%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQ-GDQVLSDKRCLTVSQLSLVDLAGSERGSRT 59
T N SSRSH+V I + Q QV + +LSL+DLAGSER S T
Sbjct: 199 QEPTEANATSSRSHAVLQITVRQKDRTASINQQV-------RIGKLSLIDLAGSERASAT 251
Query: 60 HVASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGD 119
+ GQRL+E NIN SL+ L C+ L + N+ P+R+SKLT L K G
Sbjct: 252 N-NRGQRLKEGANINRSLLALGNCINAL--VDGKKKNKHIPYRDSKLTRLLKDSLGGNCK 308
Query: 120 VRMIVCVNPSSDDYDE 135
MI ++PSS Y+E
Sbjct: 309 TVMIANISPSSSHYEE 324
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 101 bits (255), Expect = 1e-26
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N +SSRSHS+F I + + G++++ + +L+LVDLAGSE R+
Sbjct: 208 AATLMNDQSSRSHSIFSITIHIKETTISGEELVK------IGKLNLVDLAGSENIGRSG- 260
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A +R REAGNIN SL+TL + L E P+RESKLT L + G
Sbjct: 261 AENKRAREAGNINQSLLTLGRVINALVEKSPH-----IPYRESKLTRLLQDSLGGRTKTS 315
Query: 122 MIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 316 IIATISPASINLEETL 331
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 99.3 bits (248), Expect = 7e-26
Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 7 NKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQR 66
N +SSRSH++ I L L+ +LS +DLAGSERG+ T Q
Sbjct: 199 NDQSSRSHAILQIILKNKKLNKLL------------GKLSFIDLAGSERGADTSEHDRQT 246
Query: 67 LREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCV 126
+E IN SL+ L+ C+ L N+ PFR SKLT + + F G MI +
Sbjct: 247 RKEGAEINKSLLALKECIRALASNK-----AHVPFRGSKLTQVLRDSFIGNSKTVMIATI 301
Query: 127 NPSSDDYDENL 137
+PS+ + L
Sbjct: 302 SPSASSCEHTL 312
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 98.1 bits (245), Expect = 3e-25
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQ-VLSDKRCLTVSQLSLVDLAGSERGSRTH 60
A T N +SSRSH++F I L Q + DK S+ VDLAGSER +T
Sbjct: 195 ASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTG 254
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A+G RL+E +IN+ L+ L + L + ++G++ P+R+SKLT L + G
Sbjct: 255 -ATGDRLKEGISINSGLLALGNVISALGDESKKGSH--VPYRDSKLTRLLQDSLGGNSHT 311
Query: 121 RMIVCVNPSSDDYDENL 137
MI CV+P+ +++E L
Sbjct: 312 LMIACVSPADSNFEETL 328
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 95.1 bits (237), Expect = 3e-24
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 7 NKESSRSHSVFMIRL-VQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQ 65
N+ SSRSH++F + + + D + V VS L+L+DLAGSER S+T +G+
Sbjct: 190 NERSSRSHTIFQLTIESRERGDSESGTV-------RVSTLNLIDLAGSERASQTG--AGE 240
Query: 66 RLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVC 125
R +E IN SL+TL T + L E + G P+R+SKLT + + +G +I
Sbjct: 241 RRKEGSFINKSLLTLGTVISKLSEGKNSG---HIPYRDSKLTRILQPSLSGNARTAIICT 297
Query: 126 VNPSSDDYDENLIGATNFEIRA 147
++P+S +E L F RA
Sbjct: 298 ISPASSHVEETL-NTLKFASRA 318
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 94.7 bits (236), Expect = 4e-24
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ESSRSHS+F+I L Q + + +L LVDLAGSE+ S+T
Sbjct: 192 ASTNMNEESSRSHSIFLITLKQ--------ENVETGSKKR-GKLFLVDLAGSEKVSKTG- 241
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A GQ L EA IN SL L + L + G + P+R+SKLT + + G
Sbjct: 242 AEGQTLEEAKKINKSLSALGNVINALTD----GKSTHIPYRDSKLTRILQDSLGGNSRTT 297
Query: 122 MIVCVNPSSDDYDENL 137
+I+C +PSS + E L
Sbjct: 298 LIICCSPSSYNESETL 313
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 93.7 bits (233), Expect = 5e-23
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
A T N ESSRSHS+F I L +S S+LSLVDLAGSER +RT
Sbjct: 201 TASTEINDESSRSHSIFQIELASK-------NKVSGTSE--TSKLSLVDLAGSERAARTG 251
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
G RL+E +IN SL+TL + L + ++ G P+RESKLT L + G +
Sbjct: 252 -NRGTRLKEGASINKSLLTLGNVINALGDKKKSG---HIPYRESKLTRLLQDSLGGNCNT 307
Query: 121 RMIVCVNPSSDDYDENL 137
R+I ++PSS+ ++E +
Sbjct: 308 RVICTISPSSNSFEETI 324
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 89.5 bits (222), Expect = 4e-22
Identities = 57/149 (38%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N ESSRSH+VF + + + + + S+L+LVDLAGSER
Sbjct: 198 VAATSMNSESSRSHAVFTCTI-------ESWEKKASSTNIRTSRLNLVDLAGSERQKDDG 250
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A G RL+EA NIN SL TL + L + G R P+R+SKLT L + G
Sbjct: 251 -AEGVRLKEAKNINKSLSTLGHVIMALVDV-AHGKQRHVPYRDSKLTFLLRDSLGGNAKT 308
Query: 121 RMIVCVNPSSDDYDENLIGATNFEIRAHL 149
+I V+PSS + E L F RA L
Sbjct: 309 TIIANVSPSSKCFGETL-STLKFAQRAKL 336
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 86.1 bits (213), Expect = 2e-20
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 4 TLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVAS 63
T N ESSRSHSVF +V++ D + S K S+++LVDLAGSER T A+
Sbjct: 295 TSINAESSRSHSVFTC-VVESRCKSVADGLSSFK----TSRINLVDLAGSERQKLTG-AA 348
Query: 64 GQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMI 123
G RL+EAGNIN SL L + +L E Q G R P+R+S+LT L + G + M+
Sbjct: 349 GDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMV 408
Query: 124 VCVNPS 129
++PS
Sbjct: 409 CAISPS 414
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 81.8 bits (202), Expect = 3e-20
Identities = 48/127 (37%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHSVF I + V +++LVDLAGSER +
Sbjct: 72 AATAMNEHSSRSHSVFRIHFGGKNALASATEQPK------VGKINLVDLAGSERIDFSG- 124
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G RL E NIN SL TL + L E P+RESKLT L + G
Sbjct: 125 AEGSRLTETANINKSLSTLGNVISALAERDS-----HVPYRESKLTRLLQDSLGGNSRTL 179
Query: 122 MIVCVNP 128
M+ C++P
Sbjct: 180 MVACISP 186
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 78.7 bits (194), Expect = 4e-18
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N SSRSH+V I++ Q ++Q +L+L+DLAGSE RT
Sbjct: 191 AATKLNDNSSRSHAVLRIKVTQPASNIQ-----------LEGKLNLIDLAGSEDNRRTG- 238
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RL+E+ IN+SL L ++ L + P+RESKLT L + G
Sbjct: 239 NEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIPYRESKLTRLLQDSLGGGSRCI 293
Query: 122 MIVCVNPSSDDYDENLIGATNFEIRA 147
M+ + P Y + L NF R+
Sbjct: 294 MVANIAPERSFYQDTL-STLNFASRS 318
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 78.7 bits (194), Expect = 5e-18
Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH +F I L + + V +S+L+LVDLAGSER S+T V
Sbjct: 201 AETSMNQASSRSHCIFTIHLESRSREAGSEVVR-------LSKLNLVDLAGSERVSKTGV 253
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
SGQ L+EA IN SL L + L E + P+R SKLTH+ + G
Sbjct: 254 -SGQVLKEAKYINKSLSFLEQVINALSEKARTHV----PYRNSKLTHVLRDSLGGNCKTV 308
Query: 122 MIVCVNPSSDDYDENL 137
M+ + + DE L
Sbjct: 309 MLATIWVEPSNLDETL 324
>gnl|CDD|183614 PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate
synthase/chorismate mutase; Reviewed.
Length = 360
Score = 30.7 bits (70), Expect = 0.27
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 23/73 (31%)
Query: 65 QRLR-EAGNINNSLMTL---RTCL--EVLRENQQQGTNRSPPFRE--------------- 103
++LR E IN L+ L R L E+ E +QGT R P RE
Sbjct: 7 EQLRKEIDEINLQLLELLSKRGELVQEIGEEKTKQGTKRYDPVREREMLDMIAENNEGPF 66
Query: 104 --SKLTHLFKTYF 114
S + HLFK F
Sbjct: 67 EDSTIQHLFKEIF 79
>gnl|CDD|188993 cd06258, M3_like, Peptidase M3-like family, a zincin
metallopeptidase, includes M3 and M32 families. The
peptidase M3-like family, also called neurolysin-like
family, is part of the "zincins" metallopeptidases, and
includes M3 and M32 families of metallopeptidases. The
M3 family is subdivided into two subfamilies: the
widespread M3A, which comprises a number of
high-molecular mass endo- and exopeptidases from
bacteria, archaea, protozoa, fungi, plants and animals,
and the small M3B, whose members are enzymes primarily
from bacteria. Well-known mammalian/eukaryotic M3A
endopeptidases are the thimet oligopeptidase (TOP;
endopeptidase 3.4.24.15), neurolysin (alias
endopeptidase 3.4.24.16), and the mitochondrial
intermediate peptidase. The first two are intracellular
oligopeptidases, which act only on relatively short
substrates of less than 20 amino acid residues, while
the latter cleaves N-terminal octapeptides from proteins
during their import into the mitochondria. The M3A
subfamily also contains several bacterial
endopeptidases, collectively called oligopeptidases A,
as well as a large number of bacterial
carboxypeptidases, called dipeptidyl peptidases (Dcp;
Dcp II; peptidyl dipeptidase; EC 3.4.15.5). The
peptidases in the M3 family contain the HEXXH motif that
forms the active site in conjunction with a
C-terminally-located Glutamic acid (Glu) residue. A
single zinc ion is ligated by the side-chains of the two
Histidine (His) residues, and the more C-terminal Glu.
Most of the peptidases are synthesized without signal
peptides or propeptides, and function intracellularly.
There are similarities to the thermostable
carboxypeptidases from Pyrococcus furiosus
carboxypeptidase (PfuCP), and Thermus aquaticus (TaqCP),
belonging to peptidase family M32. Little is known about
function of this family, including carboxypeptidases Taq
and Pfu.
Length = 400
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 102 RESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYD 134
R K H F T GDVR++ DD
Sbjct: 163 RPGKYPHAFCTDPDVPGDVRLVSNARGGMDDIG 195
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 26.5 bits (58), Expect = 5.6
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 49 DLAGSERGSRTHVASGQRLREAG---NIN-NSLMT--LRTCLEVLRENQQ 92
D+ +ERG A+G++L+EAG +I S++T ++TC VL E+ Q
Sbjct: 24 DVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQ 73
>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with
C-terminal CBS domains [Transcription].
Length = 187
Score = 26.2 bits (58), Expect = 6.9
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 40 LTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINNSLMTLRTCLEVLRENQQQ 93
L ++Q L AG S+ ++A RL EAG ++ L T++ LE L E ++
Sbjct: 17 LGITQKDLARRAGV---SQPYIA---RL-EAGKVDPRLSTVKRILEALEEAEKT 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.377
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,272,310
Number of extensions: 613977
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 28
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)