RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3920
(153 letters)
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 126 bits (320), Expect = 2e-36
Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 25/146 (17%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ESSRSH+VF I L D++ V +LSLVDLAGSER ++T
Sbjct: 208 AATNMNEESSRSHAVFKITLTHTLYDVKSGTS-----GEKVGKLSLVDLAGSERATKTG- 261
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLF--------K 111
A+G RL+E NIN SL TL + L + Q G N++ P+R+S LT L K
Sbjct: 262 AAGDRLKEGSNINKSLTTLGLVISALAD-QSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320
Query: 112 TYFTGEGDVRMIVCVNPSSDDYDENL 137
T M+ V+P++D+YDE L
Sbjct: 321 TA--------MVATVSPAADNYDETL 338
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 126 bits (318), Expect = 6e-36
Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N +SSRSH+VF I + ++G+ +L + +L+LVDLAGSE S+
Sbjct: 225 ATTLMNAQSSRSHTVFSIVVHIRENGIEGEDML------KIGKLNLVDLAGSENVSKAGN 278
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLF--------K 111
G R+RE NIN SL+TL + L +R+P P+RESKLT L K
Sbjct: 279 EKGIRVRETVNINQSLLTLGRVITAL-------VDRAPHVPYRESKLTRLLQESLGGRTK 331
Query: 112 TYFTGEGDVRMIVCVNPSSDDYDENL 137
T +I ++P D +E L
Sbjct: 332 TS--------IIATISPGHKDIEETL 349
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 125 bits (317), Expect = 8e-36
Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 32/146 (21%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A TL N SSRSHSVF + + + G++ + + +L+LVDLAGSE R+
Sbjct: 215 AATLMNAYSSRSHSVFSVTIHMKETTIDGEE------LVKIGKLNLVDLAGSENIGRSG- 267
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLF--------K 111
A +R REAGNIN SL+TL + L R+P P+RESKLT + +
Sbjct: 268 AVDKRAREAGNINQSLLTLGRVITAL-------VERTPHVPYRESKLTRILQDSLGGRTR 320
Query: 112 TYFTGEGDVRMIVCVNPSSDDYDENL 137
T +I ++P+S + +E L
Sbjct: 321 TS--------IIATISPASLNLEETL 338
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 124 bits (315), Expect = 1e-35
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 24/146 (16%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N SSRSH+VF + L Q + + L VS+ VDLAGSER +T
Sbjct: 203 GATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ-LLVSKFHFVDLAGSERVLKTG- 260
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLF--------K 111
++G+RL+E+ IN+SL+ L + L + R P+R+SK+T + K
Sbjct: 261 STGERLKESIQINSSLLALGNVISALGD----PQRRGSHIPYRDSKITRILKDSLGGNAK 316
Query: 112 TYFTGEGDVRMIVCVNPSSDDYDENL 137
T MI CV+PSS D+DE L
Sbjct: 317 TV--------MIACVSPSSSDFDETL 334
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 124 bits (315), Expect = 2e-35
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 11/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N+ SSRSH++F+I + + + L G+ + V +L+LVDLAGSER ++T
Sbjct: 217 GATNMNEHSSRSHAIFVITIECSEVGLDGENH------IRVGKLNLVDLAGSERQAKTG- 269
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G+RL+EA IN SL L + L + G + P+R+SKLT L + G
Sbjct: 270 AQGERLKEATKINLSLSALGNVISALVD----GKSTHIPYRDSKLTRLLQDSLGGNAKTV 325
Query: 122 MIVCVNPSSDDYDENL 137
M+ V P+S + +E L
Sbjct: 326 MVANVGPASYNVEETL 341
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 124 bits (314), Expect = 2e-35
Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
T N SSRSH+VF I L Q +Q + ++++SL+DLAGSER S +
Sbjct: 216 QHPTDMNATSSRSHAVFQIYLRQQDKTASINQNV------RIAKMSLIDLAGSERASTSG 269
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEG 118
A G R E NIN SL+ L + L + ++ P+R SKLT L K G
Sbjct: 270 -AKGTRFVEGTNINRSLLALGNVINALAD----SKRKNQHIPYRNSKLTRLLKDSLGGNC 324
Query: 119 DVRMIVCVNPSSDDYDENL 137
MI V+PSS YD+
Sbjct: 325 QTIMIAAVSPSSVFYDDTY 343
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 124 bits (313), Expect = 2e-35
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
A T N+ SS SHS+F+I L + + + + L+LVDLAGSER + +
Sbjct: 205 TASTASNEHSSASHSIFIIHLSGS--NAKTGAH-------SYGTLNLVDLAGSERINVSQ 255
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
G RLRE NIN SL L + L Q T R PFR SKLT+L + TG+
Sbjct: 256 -VVGDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 312
Query: 121 RMIVCVNPSSDDYDENLIGAT-NFEIRAHLCE 151
M V ++PSS +E L + F + +
Sbjct: 313 LMFVNISPSSSHINETL--NSLRFASKVNSTR 342
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 124 bits (314), Expect = 3e-35
Identities = 53/151 (35%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+VF I Q D + + VS++SLVDLAGSER T
Sbjct: 206 AATNMNETSSRSHAVFNIIFTQKRHDAETNIT-----TEKVSKISLVDLAGSERADSTG- 259
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-------PFRESKLTHLF---- 110
A G RL+E NIN SL TL + L E P+R+S LT L
Sbjct: 260 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319
Query: 111 ----KTYFTGEGDVRMIVCVNPSSDDYDENL 137
+T M+ ++P+ +YDE L
Sbjct: 320 GGNSRTA--------MVAALSPADINYDETL 342
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 122 bits (309), Expect = 7e-35
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHS+F+I + Q + +L LVDLAGSE+ S+T
Sbjct: 193 AVTNMNEHSSRSHSIFLINVKQENTQTEQ---------KLSGKLYLVDLAGSEKVSKTG- 242
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G L EA NIN SL L + L E P+R+SK+T + + G
Sbjct: 243 AEGAVLDEAKNINKSLSALGNVISALAEGSTY-----VPYRDSKMTRILQDSLGGNCRTT 297
Query: 122 MIVCVNPSSDDYDENL 137
+++C +PSS + E
Sbjct: 298 IVICCSPSSYNESETK 313
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 123 bits (310), Expect = 9e-35
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A NK SSRSH +F I L L ++ S+++LVDLAGSER ++
Sbjct: 223 ASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKY-------ITSKINLVDLAGSERLGKSG- 274
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ GQ L+EA IN SL L + L + PFR+ KLTH K G ++
Sbjct: 275 SEGQVLKEATYINKSLSFLEQAIIALGD----QKRDHIPFRQCKLTHALKDSLGGNCNMV 330
Query: 122 MIVCVNPSSDDYDENL 137
++ + + +E L
Sbjct: 331 LVTNIYGEAAQLEETL 346
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 122 bits (309), Expect = 1e-34
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 13/136 (9%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N SSRSHS+FM+R+ + +V+ +K + V +L+LVDLAGSER S+T
Sbjct: 201 AATQMNDTSSRSHSIFMVRIECS-------EVIENKEVIRVGKLNLVDLAGSERQSKTG- 252
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A+G+ L E IN SL L + L E P+R+SKLT L + G
Sbjct: 253 ATGETLVEGAKINLSLSALGLVISKLVEGATH-----IPYRDSKLTRLLQDSLGGNSKTL 307
Query: 122 MIVCVNPSSDDYDENL 137
M ++P+S +YDE +
Sbjct: 308 MCANISPASTNYDETM 323
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 121 bits (307), Expect = 2e-34
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHSVFM+ + G + + + +L+LVDLAGSER + +
Sbjct: 209 AATRSNERSSRSHSVFMVH-------INGRNLHTGETS--QGKLNLVDLAGSERINSSA- 258
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+G+RLRE NIN SL L + L R PFR SKLT+L + G+
Sbjct: 259 VTGERLRETQNINKSLSCLGDVIYALN--TPDAGKRYIPFRNSKLTYLLQYSLVGDSKTL 316
Query: 122 MIVCVNPSSDDYDENLIGAT-NFEIRAHLCE 151
M V + P + E L + F + + +
Sbjct: 317 MFVNIPPDPNHISETL--NSLRFASKVNSTK 345
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 121 bits (306), Expect = 2e-34
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N+ SSRSH++ ++ ++G + R +L+LVDLAGSER ++
Sbjct: 196 EFTNLNEHSSRSHALLIVT-------VRGVDCSTGLRT--TGKLNLVDLAGSERVGKSG- 245
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEGD 119
A G RLREA +IN SL L + L +R PFR SKLT+L + +G+
Sbjct: 246 AEGSRLREAQHINKSLSALGDVIAAL-------RSRQGHVPFRNSKLTYLLQDSLSGDSK 298
Query: 120 VRMIVCVNPSSDDYDENL 137
M+V V+P + E L
Sbjct: 299 TLMVVQVSPVEKNTSETL 316
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 121 bits (307), Expect = 3e-34
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
TL N++SSRSH + + + +LQ + +LS VDLAGSER ++
Sbjct: 195 TGTLMNEQSSRSHLIVSVIIEST--NLQTQAI-------ARGKLSFVDLAGSERVKKSG- 244
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
++G +L+EA +IN SL L + L Q P+R KLT L G
Sbjct: 245 SAGNQLKEAQSINKSLSALGDVISALSSGNQH-----IPYRNHKLTMLMSDSLGGNAKTL 299
Query: 122 MIVCVNPSSDDYDENL 137
M V ++P+ + DE
Sbjct: 300 MFVNISPAESNLDETH 315
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 121 bits (306), Expect = 3e-34
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ESSRSHS+F+I + Q ++ QL LVDLAGSE+ +T
Sbjct: 197 AATNMNQESSRSHSIFVITITQKNVETGS---------AKSGQLFLVDLAGSEKVGKTG- 246
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
ASGQ L EA IN SL L + L + G + P+R+SKLT + + G
Sbjct: 247 ASGQTLEEAKKINKSLSALGMVINALTD----GKSSHVPYRDSKLTRILQESLGGNSRTT 302
Query: 122 MIVCVNPSSDDYDENL 137
+I+ +PSS + E L
Sbjct: 303 LIINCSPSSYNDAETL 318
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 121 bits (306), Expect = 6e-34
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
A T N+ SSRSHS+F+I L + + + + L+LVDLAGSER + +
Sbjct: 261 TASTASNEHSSRSHSIFIIHLSGS--NAKTGAH-------SYGTLNLVDLAGSERINVSQ 311
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP--PFRESKLTHLFKTYFTGEG 118
G RLRE NIN SL L + L Q + PFR SKLT+L + TG+
Sbjct: 312 -VVGDRLRETQNINKSLSALGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDS 366
Query: 119 DVRMIVCVNPSSDDYDENL 137
M V ++PSS +E L
Sbjct: 367 KTLMFVNISPSSSHINETL 385
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 120 bits (303), Expect = 9e-34
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSHSVF+I + Q L+ Q +L LVDLAGSE+ S+T
Sbjct: 200 AVTNMNEHSSRSHSVFLINVKQENLENQK---------KLSGKLYLVDLAGSEKVSKTG- 249
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A G L EA NIN SL L + L + G P+R+SKLT + + G
Sbjct: 250 AEGTVLDEAKNINKSLSALGNVISALAD----GNKTHIPYRDSKLTRILQESLGGNARTT 305
Query: 122 MIVCVNPSSDDYDENL 137
+++C +P+S + E
Sbjct: 306 IVICCSPASFNESETK 321
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 120 bits (304), Expect = 9e-34
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N+ SSRSH+V ++++ Q Q +L L+DLAGSE RT
Sbjct: 214 GATRLNQRSSRSHAVLLVKVDQRERLAPFRQ--------REGKLYLIDLAGSEDNRRTG- 264
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G RL+E+G IN SL L ++ L + + P+R+SKLT L + G
Sbjct: 265 NKGLRLKESGAINTSLFVLGKVVDALNQGLPR-----VPYRDSKLTRLLQDSLGGSAHSI 319
Query: 122 MIVCVNPSSDDYDENL 137
+I + P Y + +
Sbjct: 320 LIANIAPERRFYLDTV 335
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 118 bits (297), Expect = 6e-33
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N+ SSRSH++F + L + S K VS L+LVDLAGSER ++T
Sbjct: 191 GETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK----VSHLNLVDLAGSERAAQTG- 245
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
A+G RL+E NIN SL L ++ L + Q G +R+SKLT + + G R
Sbjct: 246 AAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFI---NYRDSKLTRILQNSLGGNAKTR 302
Query: 122 MIVCVNPSSDDYDENL 137
+I + P S +DE L
Sbjct: 303 IICTITPVS--FDETL 316
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 117 bits (295), Expect = 1e-32
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
ART N+ SSRSHSVF ++ + G+ +C + LSLVDLAGSER
Sbjct: 240 ARTAQNERSSRSHSVFQLQ-------ISGEHSSRGLQC--GAPLSLVDLAGSERLDPGLA 290
Query: 62 ---ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEG 118
+RLRE IN+SL TL + L + P+R SKLT+L + G
Sbjct: 291 LGPGERERLRETQAINSSLSTLGLVIMALSNKESH-----VPYRNSKLTYLLQNSLGGSA 345
Query: 119 DVRMIVCVNPSSDDYDENL 137
+ M V ++P ++ E+L
Sbjct: 346 KMLMFVNISPLEENVSESL 364
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 118 bits (297), Expect = 1e-32
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N+ SSRSH+V + L G + V ++LVDLAGSE
Sbjct: 254 ASTAGNERSSRSHAVTKLE-------LIGRHAEKQEIS--VGSINLVDLAGSESP----- 299
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
+ R+ E NIN SL L + L + Q P+R SKLTHL G
Sbjct: 300 KTSTRMTETKNINRSLSELTNVILALLQKQDH-----IPYRNSKLTHLLMPSLGGNSKTL 354
Query: 122 MIVCVNPSSDDYDENLIGAT-NFEIRAHLCE 151
M + V+P D + E++ + F + C+
Sbjct: 355 MFINVSPFQDCFQESV--KSLRFAASVNSCK 383
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 115 bits (291), Expect = 4e-32
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
T N SSRSH++ I + S++++VDLAGSE RT
Sbjct: 209 RPTNMNSNSSRSHAIVTIHVKSK---------------THHSRMNIVDLAGSEGVRRTG- 252
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR 121
G +E NIN L+++ + + P+R+S LT + + T + +
Sbjct: 253 HEGVARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLTTVLQASLTAQSYLT 307
Query: 122 MIVCVNPSSDDYDENL 137
+ C++P D E L
Sbjct: 308 FLACISPHQCDLSETL 323
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 116 bits (293), Expect = 4e-32
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
+T N SSRSH+ F I L + + SLVDLAG+ERG+ T
Sbjct: 253 GQTFANSNSSRSHACFQIILRA-----------KGR---MHGKFSLVDLAGNERGADTS- 297
Query: 62 ASGQRLR-EAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
++ ++ R E IN SL+ L+ C+ L +N+ PFRESKLT + + F G +
Sbjct: 298 SADRQTRMEGAEINKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIG-ENS 351
Query: 121 R--MIVCVNPSSDDYDENL 137
R MI ++P + L
Sbjct: 352 RTCMIATISPGISSCEYTL 370
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 116 bits (293), Expect = 6e-32
Identities = 60/161 (37%), Positives = 74/161 (45%), Gaps = 41/161 (25%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
A T N SSRSH+VF I L Q DL+ D S++ LVDLAGSER T
Sbjct: 257 ASTKMNDTSSRSHAVFTIMLKQIHHDLETDDT-----TERSSRIRLVDLAGSERAKSTE- 310
Query: 62 ASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-----------------PFRES 104
A+GQRLRE NIN SL TL + L + + + S P+R+S
Sbjct: 311 ATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDS 370
Query: 105 KLTHLF--------KTYFTGEGDVRMIVCVNPSSDDYDENL 137
LT L KT MI C++P+ DYDE L
Sbjct: 371 VLTWLLKDSLGGNSKT--------AMIACISPT--DYDETL 401
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 115 bits (289), Expect = 1e-31
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 19/137 (13%)
Query: 2 ARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHV 61
N ESSRSH++ I L + ++ +++ +DLAGSERG+ T
Sbjct: 201 GVNSQNDESSRSHAILNIDLKDI------------NKNTSLGKIAFIDLAGSERGADTV- 247
Query: 62 ASGQRLR-EAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
+ ++ + + NIN SL+ L+ C+ + ++ PFR+S+LT + + F G+
Sbjct: 248 SQNKQTQTDGANINRSLLALKECIRAMDSDKNH-----IPFRDSELTKVLRDIFVGKSKS 302
Query: 121 RMIVCVNPSSDDYDENL 137
MI ++P+ ++ L
Sbjct: 303 IMIANISPTISCCEQTL 319
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 114 bits (287), Expect = 4e-31
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 24/137 (17%)
Query: 4 TLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVAS 63
T N SSRSH+ F I L + + SLVDLAG+ERG+ T ++
Sbjct: 275 TFANSNSSRSHACFQILLRT--------------KGRLHGKFSLVDLAGNERGADTS-SA 319
Query: 64 GQRLR-EAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVR- 121
++ R E IN SL+ L+ C+ L +N+ PFRESKLT + + F G + R
Sbjct: 320 DRQTRMEGAEINKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIG-ENSRT 373
Query: 122 -MIVCVNPSSDDYDENL 137
MI ++P + L
Sbjct: 374 CMIAMISPGISSCEYTL 390
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 52.7 bits (127), Expect = 4e-10
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 70 AGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPS 129
A NIN SL L + L E GT P+R+SK+T + + G +++C +PS
Sbjct: 1 AKNINKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPS 56
Query: 130 SDDYDENL 137
+ E
Sbjct: 57 VFNEAETK 64
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 44.6 bits (106), Expect = 7e-07
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 74 NNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDY 133
N SL L + L E GT P+R+SK+T + + G +++C +PS +
Sbjct: 1 NKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 134 DENL 137
E
Sbjct: 57 AETK 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 40 LTVSQLSLVDLAGSERGSRTHVASGQRLREAGNINN-----------SLMTLRTCLEVLR 88
L++S L+ + + +H+ +G+++ E +N SL L L +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLVVSGPPQSLYGLNLTLR--K 395
Query: 89 ENQQQGTNRS-PPFRESKLTHLFKTYF 114
G ++S PF E KL F F
Sbjct: 396 AKAPSGLDQSRIPFSERKLK--FSNRF 420
Score = 33.9 bits (77), Expect = 0.019
Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 44/127 (34%)
Query: 13 SHSVFMIR-------LVQAPLDLQGDQVLSDKRCLTVSQLSLV-----DLAGSERGSRTH 60
S M Q + + D D S L +V +L G +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWN-RADNHFKDT--YGFSILDIVINNPVNLTIHFGGEK-- 1680
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRS-PPFRE-----SKLTH------ 108
G+R+RE N S M T ++ G ++ F+E + T
Sbjct: 1681 ---GKRIRE----NYSAMIFETIVD--------GKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 109 LFKTYFT 115
L T FT
Sbjct: 1726 LSATQFT 1732
Score = 31.6 bits (71), Expect = 0.093
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 93 QGTNRSPPFRESKLTHLFKTY 113
QG N F E L L++TY
Sbjct: 163 QG-NTDDYFEE--LRDLYQTY 180
Score = 31.6 bits (71), Expect = 0.11
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 40/114 (35%)
Query: 59 THVASGQRLREAGNINN-------SL------------MTLRTCLEVLRENQQQGTNRSP 99
A+ + L+ G I SL M++ + +EV+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF----------- 1787
Query: 100 PFRESKLTHLFKTYFTGEGDVRMIVCVNPSSDDYDENLIGAT-NFEIRAHLCEK 152
+R + G + MI +NP + A+ + E ++ E+
Sbjct: 1788 -YRGMTMQVAVPRDELGRSNYGMIA-INPGR-------VAASFSQEALQYVVER 1832
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 2.9
Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 44/173 (25%)
Query: 3 RTLCNKESSRS----HSVFMIRLVQAPLDLQGDQVLSDK----RCLTVSQLSL--VD--- 49
+L K+ S S+++ V+ + + + D + L +D
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 50 -------LAGSERGSRTHVAS---------GQRLREAGNINNSLMTLRTCLEVLRENQQQ 93
L E R + Q++R N+ ++ L+ L+ +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 94 GTNRSPPFRESKL-----------THLFKTYFTGEGDVRMIVCVNPSSDDYDE 135
+ P + E + +L + +T D+ I + ++E
Sbjct: 534 ICDNDPKY-ERLVNAILDFLPKIEENLICSKYT---DLLRIALMAEDEAIFEE 582
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.377
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,120,207
Number of extensions: 111627
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 33
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)