RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3920
(153 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 100 bits (249), Expect = 1e-26
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSH+VF I Q D + + VS++SLVDLAGSER T
Sbjct: 202 VAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE-----KVSKISLVDLAGSERADSTG 256
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSP-------PFRESKLTHLFKTY 113
G RL+E NIN SL TL + L E P+R+S LT L +
Sbjct: 257 A-KGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN 315
Query: 114 FTGEGDVRMIVCVNPSSDDYDENL 137
G M+ ++P+ +YDE L
Sbjct: 316 LGGNSRTAMVAALSPADINYDETL 339
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 98.1 bits (243), Expect = 6e-26
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+ N ESSRSH++ I L + ++ +++ +DLAGSERG+ T
Sbjct: 200 IGVNSQNDESSRSHAILNIDLKDI------------NKNTSLGKIAFIDLAGSERGADTV 247
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
+ Q + NIN SL+ L+ C+ + ++ PFR+S+LT + + F G+
Sbjct: 248 SQNKQTQTDGANINRSLLALKECIRAMDSDKNH-----IPFRDSELTKVLRDIFVGKSKS 302
Query: 121 RMIVCVNPSSDDYDENL 137
MI ++P+ ++ L
Sbjct: 303 IMIANISPTISCCEQTL 319
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 93.4 bits (231), Expect = 5e-24
Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+T N SSRSH+ F I L + + SLVDLAG+ERG+ T
Sbjct: 231 SGQTFANSNSSRSHACFQILLRT--------------KGRLHGKFSLVDLAGNERGADTS 276
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGE-GD 119
A Q E IN SL+ L+ C+ L +N+ PFRESKLT + + F GE
Sbjct: 277 SADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSR 331
Query: 120 VRMIVCVNPSSDDYDENL 137
MI ++P + L
Sbjct: 332 TCMIAMISPGISSCEYTL 349
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 92.8 bits (229), Expect = 7e-24
Identities = 50/132 (37%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 6 CNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQ 65
N+ SS SHS+F+I L + + L+LVDLAGSER + + G
Sbjct: 208 SNEHSSASHSIFIIHLSGSNAKTGAH---------SYGTLNLVDLAGSERINVSQ-VVGD 257
Query: 66 RLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVC 125
RLRE NIN SL L + L + T R PFR SKLT+L + TG+ M V
Sbjct: 258 RLRETQNINKSLSCLGDVIHALGQPD--STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 315
Query: 126 VNPSSDDYDENL 137
++PSS +E L
Sbjct: 316 ISPSSSHINETL 327
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 90.0 bits (222), Expect = 6e-23
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ SSRSHS+F+I + Q + +L LVDLAGSE+ S+T
Sbjct: 190 VAVTNMNEHSSRSHSIFLINVKQENTQTEQ---------KLSGKLYLVDLAGSEKVSKTG 240
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
G L EA NIN SL L + L E P+R+SK+T + + G
Sbjct: 241 A-EGAVLDEAKNINKSLSALGNVISALAEGSTY-----VPYRDSKMTRILQDSLGGNCRT 294
Query: 121 RMIVCVNPSSDDYDENL 137
+++C +PSS + E
Sbjct: 295 TIVICCSPSSYNESETK 311
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 85.7 bits (211), Expect = 3e-21
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 6 CNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVASGQ 65
N+ SSRSH+V + L+ ++K+ ++V ++LVDLAGSE +
Sbjct: 244 GNERSSRSHAVTKLELIGRH---------AEKQEISVGSINLVDLAGSESP-----KTST 289
Query: 66 RLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMIVC 125
R+ E NIN SL L + L + Q P+R SKLTHL G M +
Sbjct: 290 RMTETKNINRSLSELTNVILALLQKQD-----HIPYRNSKLTHLLMPSLGGNSKTLMFIN 344
Query: 126 VNPSSDDYDENLIGATNFEIRAHLC 150
V+P D + E++ + F + C
Sbjct: 345 VSPFQDCFQESV-KSLRFAASVNSC 368
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 84.2 bits (207), Expect = 1e-20
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
+A T N+ESSRSHS+F+I + Q ++ QL LVDLAGSE+ +T
Sbjct: 195 VAATNMNQESSRSHSIFVITITQKNVE---------TGSAKSGQLFLVDLAGSEKVGKTG 245
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
SGQ L EA IN SL L + L + + P+R+SKLT + + G
Sbjct: 246 A-SGQTLEEAKKINKSLSALGMVINALTDGKSS----HVPYRDSKLTRILQESLGGNSRT 300
Query: 121 RMIVCVNPSSDDYDENL 137
+I+ +PSS + E L
Sbjct: 301 TLIINCSPSSYNDAETL 317
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 83.9 bits (206), Expect = 1e-20
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 1 MARTLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTH 60
A TL N SSRSHSVF + + + G++++ + +L+LVDLAGSE R+
Sbjct: 206 TAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV------KIGKLNLVDLAGSENIGRSG 259
Query: 61 VASGQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDV 120
A +R REAGNIN SL+TL + L E P+RESKLT + + G
Sbjct: 260 -AVDKRAREAGNINQSLLTLGRVITALVERTPH-----VPYRESKLTRILQDSLGGRTRT 313
Query: 121 RMIVCVNPSSDDYDENL 137
+I ++P+S + +E L
Sbjct: 314 SIIATISPASLNLEETL 330
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 73.1 bits (178), Expect = 1e-16
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 4 TLCNKESSRSHSVFMIRLVQAPLDLQGDQVLSDKRCLTVSQLSLVDLAGSERGSRTHVAS 63
TL N++SSRSH + + + L + + +LS VDLAGSER ++ +
Sbjct: 192 TLMNEQSSRSHLIVSVIIESTNLQ---------TQAIARGKLSFVDLAGSERVKKSGS-A 241
Query: 64 GQRLREAGNINNSLMTLRTCLEVLRENQQQGTNRSPPFRESKLTHLFKTYFTGEGDVRMI 123
G +L+EA +IN SL L + L Q P+R KLT L G M
Sbjct: 242 GNQLKEAQSINKSLSALGDVISALSSGNQ-----HIPYRNHKLTMLMSDSLGGNAKTLMF 296
Query: 124 VCVNPSSDDYDENL 137
V ++P+ + DE
Sbjct: 297 VNISPAESNLDETH 310
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 172
Score = 23.9 bits (51), Expect = 9.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 107 THLFKT--YFTGEGDVRMIVCVNPSSDDYDENLIGATN 142
T + YF+ E D + +D + EN+ TN
Sbjct: 14 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTN 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.377
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,196
Number of extensions: 19906
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 12
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.4 bits)