BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3923
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX
          WITH Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 24 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKA 69
          F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YK 
Sbjct: 7  FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG 52


>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
           Enzyme Capd
 pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
           Enzyme Capd
 pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
           Enzyme Capd, Crystal Form Ii
          Length = 323

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 25  AKDFIAGGVSAAVSKTAVAPIERVK 49
           AK F  GGV+ A+SKTA   +E +K
Sbjct: 190 AKGFYEGGVARAISKTAKISLEDIK 214


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.127    0.323 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,234,768
Number of Sequences: 62578
Number of extensions: 26208
Number of successful extensions: 38
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 2
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)