Query psy3923
Match_columns 73
No_of_seqs 141 out of 1045
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:50:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.0 3.2E-10 1.1E-14 73.8 4.1 38 20-57 3-40 (297)
2 1okc_A ADP, ATP carrier protei 98.7 1E-08 3.5E-13 66.6 3.9 35 22-56 207-241 (297)
3 2lck_A Mitochondrial uncouplin 98.7 1.6E-08 5.3E-13 66.1 4.1 36 22-57 102-137 (303)
4 2lck_A Mitochondrial uncouplin 98.6 1.7E-08 6E-13 65.9 3.7 36 21-56 199-234 (303)
5 3i71_A Ethanolamine utilizatio 29.2 32 0.0011 17.5 1.7 25 28-52 15-39 (68)
6 2kdu_B MUNC13-1, protein UNC-1 29.2 24 0.00081 16.1 1.1 11 47-57 12-22 (36)
7 4b19_A PEPA1; toxin, toxin apo 24.3 6 0.0002 17.4 -1.4 20 27-46 6-25 (30)
8 2a3d_A Protein (de novo three- 18.3 77 0.0027 16.0 1.8 15 44-58 10-24 (73)
9 1bts_A BAND 3 anion transport 16.8 80 0.0027 13.1 2.3 21 25-45 4-25 (26)
10 2da7_A Zinc finger homeobox pr 15.1 1.3E+02 0.0045 15.6 2.3 21 37-57 38-58 (71)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=98.99 E-value=3.2e-10 Score=73.83 Aligned_cols=38 Identities=76% Similarity=1.088 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHHHHhHhhhhccHHHHHHHHhhccc
Q psy3923 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHI 57 (73)
Q Consensus 20 ~~~~~~~~~~aG~~aG~~~~~~~~P~d~vKtrlQ~q~~ 57 (73)
+.++.+..+++|+++|+++.++++|+|+||+|||++..
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~ 40 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHA 40 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccc
Confidence 35678899999999999999999999999999999863
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=98.71 E-value=1e-08 Score=66.64 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhHhhhhccHHHHHHHHhhcc
Q psy3923 22 VAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQH 56 (73)
Q Consensus 22 ~~~~~~~~aG~~aG~~~~~~~~P~d~vKtrlQ~q~ 56 (73)
.+.+..+++|+++|+++.++++|+|+||+|||++.
T Consensus 207 ~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 207 VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 34677899999999999999999999999999985
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=98.68 E-value=1.6e-08 Score=66.11 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHhHhhhhccHHHHHHHHhhccc
Q psy3923 22 VAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHI 57 (73)
Q Consensus 22 ~~~~~~~~aG~~aG~~~~~~~~P~d~vKtrlQ~q~~ 57 (73)
.+.+..+++|+++|+++.++++|+|+||+|||++..
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~ 137 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR 137 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCS
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccc
Confidence 567889999999999999999999999999999863
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=98.65 E-value=1.7e-08 Score=65.87 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHHHhHhhhhccHHHHHHHHhhcc
Q psy3923 21 PVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQH 56 (73)
Q Consensus 21 ~~~~~~~~~aG~~aG~~~~~~~~P~d~vKtrlQ~q~ 56 (73)
..+.+..+++|+++|+++.++++|+|+||+|||++.
T Consensus 199 ~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 345677899999999999999999999999999985
No 5
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=29.20 E-value=32 Score=17.53 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHhhhhccHHHHHHHH
Q psy3923 28 FIAGGVSAAVSKTAVAPIERVKLLL 52 (73)
Q Consensus 28 ~~aG~~aG~~~~~~~~P~d~vKtrl 52 (73)
+.-|..+|=++.-+.-|++..|.++
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ar~aL 39 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKARNAL 39 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HhccccHHHHHHHhCCcHHHHHHHH
Confidence 3346778888888889999988877
No 6
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=29.19 E-value=24 Score=16.10 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=8.2
Q ss_pred HHHHHHhhccc
Q psy3923 47 RVKLLLQVQHI 57 (73)
Q Consensus 47 ~vKtrlQ~q~~ 57 (73)
+-|+|+|+|..
T Consensus 12 ~nKVR~qlqe~ 22 (36)
T 2kdu_B 12 FNKVRMQLQEA 22 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 34899999853
No 7
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=24.33 E-value=6 Score=17.43 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHhhhhccHH
Q psy3923 27 DFIAGGVSAAVSKTAVAPIE 46 (73)
Q Consensus 27 ~~~aG~~aG~~~~~~~~P~d 46 (73)
++++-.++||+-+++++.++
T Consensus 6 ~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 6 HIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888775
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=18.29 E-value=77 Score=15.97 Aligned_cols=15 Identities=27% Similarity=0.127 Sum_probs=11.1
Q ss_pred cHHHHHHHHhhcccc
Q psy3923 44 PIERVKLLLQVQHIS 58 (73)
Q Consensus 44 P~d~vKtrlQ~q~~~ 58 (73)
-+..+|+|+|.-+.+
T Consensus 10 rlaaiktrlqalggs 24 (73)
T 2a3d_A 10 RLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHhcCc
Confidence 455789999987653
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=16.75 E-value=80 Score=13.08 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHh-HhhhhccH
Q psy3923 25 AKDFIAGGVSAAV-SKTAVAPI 45 (73)
Q Consensus 25 ~~~~~aG~~aG~~-~~~~~~P~ 45 (73)
.+.+++.+++|++ +-+...|+
T Consensus 4 ~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 4 SELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHhcccC
Confidence 3456677777775 34444454
No 10
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.07 E-value=1.3e+02 Score=15.58 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.3
Q ss_pred hHhhhhccHHHHHHHHhhccc
Q psy3923 37 VSKTAVAPIERVKLLLQVQHI 57 (73)
Q Consensus 37 ~~~~~~~P~d~vKtrlQ~q~~ 57 (73)
++..+..|.++||+-+|....
T Consensus 38 LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhccc
Confidence 566788999999999988764
Done!