RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3923
(73 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane
protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos
taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 82.3 bits (204), Expect = 4e-21
Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYK 68
++F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YK
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYK 51
Score = 27.6 bits (62), Expect = 0.27
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 24 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYK 68
FA + +GG + A S V P++ + L + + ++ +
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFT 154
Score = 27.2 bits (61), Expect = 0.34
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 24 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYK 68
++ AV+ P + V+ + +Q S + + Y
Sbjct: 209 IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ--SGRKGADIMYT 251
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 31.1 bits (71), Expect = 0.017
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 25 AKDFIAGGVSAAVSKTAVAPIERVKLLLQVQ 55
F+ G +A ++ P++ K+ LQ+Q
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQ 32
Score = 28.0 bits (63), Expect = 0.17
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYK 68
+ +AG + A++ P + VK+ Q Q + +RY+
Sbjct: 100 EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA---RAGGGRRYQ 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.040
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 3 KTVQKQEAPMPM-----APALA 19
+ ++K +A + + APALA
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 24.7 bits (54), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 1 MSKTVQKQEA--PM--PMAPALADPVAF--AKDFI 29
M+ V +Q A PMAP D +AF A++ I
Sbjct: 665 MAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELI 699
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 24.7 bits (54), Expect = 3.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 1 MSKTVQKQEA--PM--PMAPALADPVAF--AKDFI 29
M+K V +Q A P PMA A+ AF A D I
Sbjct: 663 MAKVVDQQNAGDPAYRPMAGNFANSCAFKAASDLI 697
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride
transfer, oxidoreductase; HET: FMN TXD; 1.40A
{Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Length = 377
Score = 24.0 bits (53), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 18 LADPVAFAKDFIA 30
AD VAF + FIA
Sbjct: 321 TADAVAFGRPFIA 333
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase,
flavoenzyme, explosive degradation, steroid binding;
HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1
PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A*
1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A*
3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A*
...
Length = 364
Score = 23.6 bits (52), Expect = 8.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 18 LADPVAFAKDFIA 30
L D VAF +D+IA
Sbjct: 316 LIDAVAFGRDYIA 328
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 23.6 bits (52), Expect = 8.5
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 13 PMAPALAD----PVAFAKDFIAGGVSAAVSK 39
+A L + PVA + + V AAV +
Sbjct: 75 AVAKRLGELLERPVAKTNEAVGDEVKAAVDR 105
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET:
BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A*
2gq9_A* 2gqa_A*
Length = 365
Score = 23.2 bits (51), Expect = 8.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 18 LADPVAFAKDFIA 30
LAD + F + FIA
Sbjct: 315 LADMIGFGRPFIA 327
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 23.2 bits (51), Expect = 9.5
Identities = 3/31 (9%), Positives = 5/31 (16%), Gaps = 4/31 (12%)
Query: 13 PMAPALAD----PVAFAKDFIAGGVSAAVSK 39
P+ AL +
Sbjct: 72 PVGEALRAHLPEARFAPFPPGSEEARREAEA 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.127 0.338
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,016,461
Number of extensions: 47079
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 18
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)