RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3923
         (73 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
          heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 70.1 bits (170), Expect = 6e-17
 Identities = 37/48 (77%), Positives = 44/48 (91%)

Query: 21 PVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYK 68
           ++F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YK
Sbjct: 3  ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYK 50


>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 726

 Score = 25.3 bits (55), Expect = 0.73
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 1   MSKTVQKQEAP----MPMAPALADPVAF--AKDFIAGGVS 34
           M+  V +Q A      PMAP   D +AF  A++ I  G  
Sbjct: 664 MAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELILSGAQ 703


>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia
          coli [TaxId: 562]}
          Length = 87

 Score = 24.0 bits (52), Expect = 1.2
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 24 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISE 63
           AK F+A  ++A      +      + L  V+ +S  I  
Sbjct: 9  LAKLFLASKITAIEFSERI--CVERRRLYGVKDLSPNILN 46


>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 184

 Score = 24.4 bits (52), Expect = 1.4
 Identities = 8/53 (15%), Positives = 18/53 (33%)

Query: 17  ALADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKA 69
            +A  +      +   +S +   + +     V     V+  ++ IS     KA
Sbjct: 132 CIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKA 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 228,899
Number of extensions: 7599
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 5
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)