BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3924
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 8 YGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTD 67
Y +C D+ + P+ + GW+C +C VC+ C Q ++ ++++CD CD YH +C
Sbjct: 32 YHGMCLDIAV--TPLKRA----GWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ 85
Query: 68 PPLDHIPRGTWKCKWCAQCLTCGATG 93
P + +P WKCK C C++ ++G
Sbjct: 86 PVMKSVPTNGWKCKNCRICISGPSSG 111
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 28 SKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCL 87
S G +C VC+ D+ C C YH C D + + R W+C C C
Sbjct: 2 SSGSSGANCAVCDSPGDLLDQ---FFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQ 58
Query: 88 TCGAT--------------GYHIYCTDPPLDHI 106
C + GYH +C P + +
Sbjct: 59 NCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSV 91
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 20 LPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWK 79
L +++ + + W+C++C C C ++ +L+ CD+CD YH+YC +PP+ P G+W
Sbjct: 42 LNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWS 101
Query: 80 CKWCAQCL 87
C C + L
Sbjct: 102 CHLCWELL 109
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 34 LDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
+D +C+ C++ ++ +L+ CD CD +YHI+C PPL IPRG W+C C
Sbjct: 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 31 WRCLDCTVCEGCA-QRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
W+C++C C C Q + ++ CD CD +H+ C DPPL +P+G W C+ C
Sbjct: 54 WQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 21/92 (22%)
Query: 36 CTVCEGCAQRHDEGR---LILCDECDISYHIYCT--DPPLD-HIPRGTWKCKWCAQCLTC 89
C+ C G +++ E + LI C +C S H C P L + W+C C C +C
Sbjct: 6 CSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSC 65
Query: 90 GATG---------------YHIYCTDPPLDHI 106
G +H+ C DPPL +
Sbjct: 66 RDQGKNADNMLFCDSCDRGFHMECCDPPLTRM 97
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 31 WRCLDCTVCEGCA-QRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
W+C++C C C Q + ++ CD CD +H+ C DPPL +P+G W C+ C
Sbjct: 56 WQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 21/92 (22%)
Query: 36 CTVCEGCAQRHDEGR---LILCDECDISYHIYCT--DPPLD-HIPRGTWKCKWCAQCLTC 89
C+ C G +++ E + LI C +C S H C P L + W+C C C +C
Sbjct: 8 CSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSC 67
Query: 90 GATG---------------YHIYCTDPPLDHI 106
G +H+ C DPPL +
Sbjct: 68 RDQGKNADNMLFCDSCDRGFHMECCDPPLTRM 99
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 192 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
CA D G LI CD C ++H+ C PPL IP GTW+C C Q
Sbjct: 11 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
CA D G LI CD C ++H+ C PPL IP GTW+C C Q
Sbjct: 8 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 51
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 32 RCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGT-WKCKWC 83
+C C+ C C +H+ +LCDEC+++YHIYC +PPLD +P W C C
Sbjct: 23 KCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 7 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 22 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 25 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
C+ C ++ ++ +LILCDEC+ ++H++C P L +P G W+C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 40 EGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84
E C D G L+ CD C SYHI+C +PPL IP G W C C
Sbjct: 10 EFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
Protein 21a
Length = 56
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
C+ G+L++CD C YH+ C DPPL IP+G W C C
Sbjct: 12 CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
C+VC G+L++CD C YH+ C DPPL IP+G W C C
Sbjct: 8 CSVCRK------SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
(Mi2b)
Length = 61
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
CE C Q G +ILCD C +YH+ C DP ++ P G W C C +
Sbjct: 14 CEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With
C- Terminal Loop Replaced By Corresponding Loop From
Wstf
Length = 61
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 40 EGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84
E C D G L+ CD C SYHI+C P L +P G W+C C
Sbjct: 10 EFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
T+C C + G L++C++C+ +H+ C P L +P W C C
Sbjct: 3 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
T+C C + G L++C++C+ +H+ C P L +P W C C
Sbjct: 26 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
CA + G L+ C++C +H+ C P L + P G W C +C
Sbjct: 7 CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFC 48
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 42 CAQRHDEGRLILCD--ECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGY----- 94
C Q D G L++CD +C +YH+ C + L P G W+C W QC C +
Sbjct: 18 CFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPW-HQCDECSSAAVSFCEF 74
Query: 95 --HIYCTD 100
H +C D
Sbjct: 75 CPHSFCKD 82
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
C++C + + ++ CD C+++ H C P +IP G W C+ C Q
Sbjct: 19 CSICMD-GESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQ 65
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
C++C + + ++ CD C+++ H C P +IP G W C+ C Q
Sbjct: 28 CSICMD-GESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQ 74
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
CA + G L+ C++C +H+ C P L P G W C +C
Sbjct: 10 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
C HD+G +I CD+C + HI C HIP T+ C+ C
Sbjct: 33 CGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERC 73
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 57 CDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGYHIYCTDPPLDHIIFVQDKIRPK 116
D+S+H LD P G W W A+ LT G TGY P+D I Q I +
Sbjct: 21 TDLSFHKGEKFQILDASPPGDW---WEARSLTTGETGYIPSNYVAPVDSIQGEQKLISEE 77
Query: 117 RL 118
L
Sbjct: 78 DL 79
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex
With A H3k4me3 Peptide
Length = 75
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCT 66
+C GC + D +I CD+CD YH C
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCV 48
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 38 VCEGCAQRHDEG--RLILCDECDISYHIYCTDPPLDHI---PRGTWKCKWC 83
VC C + + E +++CD+C YH C P +D W C+ C
Sbjct: 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 49 GRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWCAQ 85
G +I CD D S +H C L PRG W C C+Q
Sbjct: 47 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 49 GRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWCAQ 85
G +I CD D S +H C L PRG W C C+Q
Sbjct: 27 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 71 DHIPRGTWKCKWCAQCLTCGATGYHIYCTDPPLDHIIF 108
D I RGT + GAT H+ + PP+ H F
Sbjct: 346 DSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCF 383
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 71 DHIPRGTWKCKWCAQCLTCGATGYHIYCTDPPLDHIIF 108
D I RGT + GAT H+ + PP+ H F
Sbjct: 346 DSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCF 383
>pdb|2ZET|C Chain C, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|D Chain D, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 153
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 24 KVILSKGWRCLDCT--VCEGCAQRHDEGRLILCDECDIS 60
+++L+ +CL+C+ VC+ C+ H E + LCD C ++
Sbjct: 79 RLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 93 GYHIYCTDPPLD 104
GYHIY +DPP +
Sbjct: 340 GYHIYSSDPPFE 351
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 93 GYHIYCTDPPLD 104
GYHIY +DPP +
Sbjct: 357 GYHIYSSDPPFE 368
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 93 GYHIYCTDPPLD 104
GYHIY +DPP +
Sbjct: 357 GYHIYSSDPPFE 368
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 93 GYHIYCTDPPLD 104
GYHIY +DPP +
Sbjct: 357 GYHIYSSDPPFE 368
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 93 GYHIYCTDPPLD 104
GYHIY +DPP +
Sbjct: 357 GYHIYSSDPPFE 368
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 93 GYHIYCTDPPLD 104
GYHIY +DPP +
Sbjct: 340 GYHIYSSDPPFE 351
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 11 VCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRHDE 48
V ++ + DL ++K + WR C+G +H+E
Sbjct: 30 VVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNE 67
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With
A Histone H3k4me3 Peptide
Length = 62
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 49 GRLILCD--ECDIS-YHIYCTDPPLDHIPRGTWKCKWC 83
G +I CD EC I +H C L+H P+G W C C
Sbjct: 22 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 57
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 49 GRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWCAQ 85
G +I CD+ D S +H C L PRG W C C+Q
Sbjct: 21 GEMIGCDDPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 49 GRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWCAQ 85
G +I CD D S +H C L PRG W C C+Q
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 49 GRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWCAQ 85
G +I CD D S +H C L PRG W C C+Q
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
Length = 55
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 49 GRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWCAQ 85
G +I CD D S +H C L PRG W C C+Q
Sbjct: 16 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.511
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,262,564
Number of Sequences: 62578
Number of extensions: 167179
Number of successful extensions: 435
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 82
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)