Query psy3924
Match_columns 131
No_of_seqs 147 out of 1056
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 20:51:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.8 7.1E-22 2.4E-26 134.4 5.3 80 6-91 30-109 (111)
2 2kwj_A Zinc finger protein DPF 99.8 2.3E-21 7.7E-26 132.8 2.3 76 6-84 31-106 (114)
3 3v43_A Histone acetyltransfera 99.8 1E-20 3.6E-25 129.1 2.8 77 6-85 34-111 (112)
4 3asl_A E3 ubiquitin-protein li 99.7 2.4E-18 8.1E-23 108.4 4.5 55 30-85 13-68 (70)
5 2e6s_A E3 ubiquitin-protein li 99.7 4.3E-17 1.5E-21 104.4 6.1 57 28-85 19-76 (77)
6 3shb_A E3 ubiquitin-protein li 99.7 3.6E-17 1.2E-21 104.8 5.0 56 29-85 20-76 (77)
7 2ysm_A Myeloid/lymphoid or mix 99.6 4E-16 1.4E-20 105.9 7.2 80 37-118 8-102 (111)
8 2kwj_A Zinc finger protein DPF 99.6 3.5E-16 1.2E-20 106.9 1.9 78 46-125 18-113 (114)
9 2e6r_A Jumonji/ARID domain-con 99.5 1.6E-15 5.4E-20 100.1 3.0 59 27-85 7-65 (92)
10 1f62_A Transcription factor WS 99.5 3E-15 1E-19 88.4 2.6 48 38-85 2-49 (51)
11 3ask_A E3 ubiquitin-protein li 99.5 1.8E-14 6.3E-19 108.6 4.5 55 30-85 169-224 (226)
12 1fp0_A KAP-1 corepressor; PHD 99.5 6.1E-14 2.1E-18 91.6 5.7 57 27-86 16-72 (88)
13 3v43_A Histone acetyltransfera 99.5 8.8E-15 3E-19 99.6 1.2 67 46-114 21-105 (112)
14 1mm2_A MI2-beta; PHD, zinc fin 99.4 1.4E-13 4.9E-18 84.2 4.3 45 38-85 11-55 (61)
15 2lri_C Autoimmune regulator; Z 99.4 8.6E-14 2.9E-18 86.5 2.5 45 38-85 14-58 (66)
16 2yql_A PHD finger protein 21A; 99.4 2.5E-13 8.5E-18 81.7 2.7 44 38-84 11-54 (56)
17 1xwh_A Autoimmune regulator; P 99.3 3.3E-13 1.1E-17 83.7 2.6 45 38-85 10-54 (66)
18 2puy_A PHD finger protein 21A; 99.3 3E-13 1E-17 82.4 2.2 44 38-84 7-50 (60)
19 2l5u_A Chromodomain-helicase-D 99.3 3.9E-13 1.3E-17 82.2 2.4 46 37-85 12-57 (61)
20 1wev_A Riken cDNA 1110020M19; 99.3 6E-13 2E-17 87.0 2.2 49 37-85 17-71 (88)
21 2yt5_A Metal-response element- 99.3 9.3E-13 3.2E-17 81.4 1.1 49 37-85 7-60 (66)
22 2ku3_A Bromodomain-containing 99.2 2.5E-12 8.7E-17 80.9 0.5 47 37-85 17-65 (71)
23 4gne_A Histone-lysine N-methyl 99.2 1.1E-11 3.9E-16 83.6 3.6 64 37-106 16-91 (107)
24 3o36_A Transcription intermedi 99.2 1.7E-11 5.8E-16 89.5 4.2 46 38-86 6-51 (184)
25 3u5n_A E3 ubiquitin-protein li 99.1 2.3E-11 7.8E-16 90.4 3.5 47 37-86 8-54 (207)
26 2ro1_A Transcription intermedi 99.1 3.6E-11 1.2E-15 88.5 4.2 45 38-85 4-48 (189)
27 2l43_A N-teminal domain from h 99.1 8.2E-12 2.8E-16 81.6 -0.5 47 37-85 26-74 (88)
28 4gne_A Histone-lysine N-methyl 99.1 1.1E-10 3.8E-15 78.8 4.9 65 2-80 34-98 (107)
29 2k16_A Transcription initiatio 99.1 4E-11 1.4E-15 75.8 2.3 49 37-85 19-67 (75)
30 2lv9_A Histone-lysine N-methyl 98.9 1.2E-09 4.1E-14 72.5 4.3 44 41-85 32-75 (98)
31 1wen_A Inhibitor of growth fam 98.7 8.6E-09 2.9E-13 64.6 3.7 44 38-85 18-64 (71)
32 2vnf_A ING 4, P29ING4, inhibit 98.6 4.8E-09 1.6E-13 63.7 0.6 44 38-85 12-58 (60)
33 1weu_A Inhibitor of growth fam 98.6 2.9E-08 1E-12 65.0 4.1 45 37-85 37-84 (91)
34 3c6w_A P28ING5, inhibitor of g 98.6 9.2E-09 3.1E-13 62.2 0.6 44 38-85 11-57 (59)
35 2jmi_A Protein YNG1, ING1 homo 98.5 3.7E-08 1.2E-12 64.4 2.3 41 41-84 30-74 (90)
36 2g6q_A Inhibitor of growth pro 98.5 1.7E-08 5.9E-13 61.6 0.7 44 38-85 13-59 (62)
37 2lbm_A Transcriptional regulat 98.5 1.4E-08 4.9E-13 71.5 -0.7 45 38-85 65-116 (142)
38 3o70_A PHD finger protein 13; 98.3 2.5E-07 8.5E-12 57.4 2.6 43 41-84 23-65 (68)
39 1x4i_A Inhibitor of growth pro 98.2 2E-07 7E-12 58.1 0.1 41 42-85 11-54 (70)
40 1we9_A PHD finger family prote 98.1 7.4E-07 2.5E-11 54.2 1.5 47 39-85 9-57 (64)
41 3o7a_A PHD finger protein 13 v 98.1 8.1E-07 2.8E-11 52.1 1.4 43 41-84 8-50 (52)
42 1wee_A PHD finger family prote 98.1 1.4E-06 4.9E-11 54.3 2.3 48 37-85 17-65 (72)
43 3ql9_A Transcriptional regulat 98.0 1.7E-07 5.8E-12 65.0 -3.4 44 38-84 59-109 (129)
44 2kgg_A Histone demethylase jar 98.0 8.5E-07 2.9E-11 52.0 -0.0 47 38-84 4-52 (52)
45 4bbq_A Lysine-specific demethy 97.9 1.4E-05 4.8E-10 53.8 5.1 38 48-85 72-113 (117)
46 3asl_A E3 ubiquitin-protein li 97.8 2.3E-05 7.8E-10 48.6 3.9 43 75-118 11-67 (70)
47 1wem_A Death associated transc 97.8 8.6E-07 3E-11 55.8 -2.8 45 41-85 20-69 (76)
48 1wep_A PHF8; structural genomi 97.8 3E-06 1E-10 53.7 -0.4 45 41-85 16-62 (79)
49 2xb1_A Pygopus homolog 2, B-ce 97.7 5.2E-06 1.8E-10 55.5 0.6 46 38-85 5-60 (105)
50 1wew_A DNA-binding family prot 97.7 5.8E-06 2E-10 52.3 0.7 47 38-85 18-71 (78)
51 2vpb_A Hpygo1, pygopus homolog 97.7 2.6E-06 8.9E-11 52.3 -0.9 47 38-84 10-64 (65)
52 1f62_A Transcription factor WS 97.7 9.3E-06 3.2E-10 47.1 1.2 28 3-37 21-48 (51)
53 3shb_A E3 ubiquitin-protein li 97.7 3E-05 1E-09 49.0 3.6 41 76-117 20-74 (77)
54 2rsd_A E3 SUMO-protein ligase 97.7 1.3E-05 4.5E-10 49.3 1.6 45 41-85 14-64 (68)
55 2yql_A PHD finger protein 21A; 97.6 2E-05 6.9E-10 46.6 1.7 26 6-37 29-54 (56)
56 2lri_C Autoimmune regulator; Z 97.6 1.9E-05 6.4E-10 48.5 1.3 26 6-37 32-57 (66)
57 1wil_A KIAA1045 protein; ring 97.6 1.1E-05 3.8E-10 51.7 0.1 47 38-85 17-75 (89)
58 1mm2_A MI2-beta; PHD, zinc fin 97.6 3.8E-05 1.3E-09 46.3 2.5 26 6-37 29-54 (61)
59 2l5u_A Chromodomain-helicase-D 97.6 2E-05 6.8E-10 47.6 1.1 28 3-37 29-56 (61)
60 2ri7_A Nucleosome-remodeling f 97.5 3.7E-06 1.3E-10 60.3 -2.7 47 38-85 10-58 (174)
61 1fp0_A KAP-1 corepressor; PHD 97.5 7.2E-05 2.5E-09 48.5 3.7 32 6-43 45-76 (88)
62 2puy_A PHD finger protein 21A; 97.5 2.8E-05 9.6E-10 46.6 1.5 28 3-37 23-50 (60)
63 1xwh_A Autoimmune regulator; P 97.5 3.5E-05 1.2E-09 47.1 1.7 27 6-38 28-54 (66)
64 3kqi_A GRC5, PHD finger protei 97.5 1E-05 3.4E-10 50.8 -0.9 45 41-85 14-60 (75)
65 2e6s_A E3 ubiquitin-protein li 97.5 0.00011 3.8E-09 46.3 4.0 31 86-117 44-74 (77)
66 2e6r_A Jumonji/ARID domain-con 97.4 5.7E-05 2E-09 49.2 1.7 29 3-38 37-65 (92)
67 3ask_A E3 ubiquitin-protein li 96.8 0.0011 3.7E-08 49.8 4.1 32 86-118 192-223 (226)
68 3u5n_A E3 ubiquitin-protein li 96.8 0.00077 2.6E-08 49.5 2.9 27 6-38 27-53 (207)
69 3lqh_A Histone-lysine N-methyl 96.7 0.00017 5.7E-09 52.6 -0.7 48 38-85 4-62 (183)
70 3o36_A Transcription intermedi 96.7 0.00084 2.9E-08 48.4 2.9 27 6-38 24-50 (184)
71 1wev_A Riken cDNA 1110020M19; 96.7 0.00032 1.1E-08 45.2 0.5 31 6-38 41-71 (88)
72 1wen_A Inhibitor of growth fam 96.5 0.0016 5.5E-08 40.3 2.6 27 3-37 37-63 (71)
73 2k16_A Transcription initiatio 96.5 0.00079 2.7E-08 41.8 1.1 28 3-37 39-66 (75)
74 2ku3_A Bromodomain-containing 96.4 0.0004 1.4E-08 43.1 -0.5 26 3-37 39-64 (71)
75 2yt5_A Metal-response element- 96.4 0.0005 1.7E-08 41.6 -0.2 30 6-38 31-60 (66)
76 2ro1_A Transcription intermedi 96.3 0.0021 7.1E-08 46.8 2.5 27 6-38 22-48 (189)
77 2vnf_A ING 4, P29ING4, inhibit 96.1 0.0015 5.1E-08 39.1 0.8 27 3-37 31-57 (60)
78 1weu_A Inhibitor of growth fam 96.0 0.0037 1.3E-07 40.6 2.6 27 3-37 57-83 (91)
79 3c6w_A P28ING5, inhibitor of g 96.0 0.0017 5.9E-08 38.7 0.8 27 3-37 30-56 (59)
80 2l43_A N-teminal domain from h 96.0 0.00093 3.2E-08 43.0 -0.4 26 3-37 48-73 (88)
81 4bbq_A Lysine-specific demethy 95.6 0.0031 1.1E-07 42.1 1.0 29 35-70 6-34 (117)
82 2g6q_A Inhibitor of growth pro 95.5 0.0036 1.2E-07 37.6 0.8 27 3-37 32-58 (62)
83 3kv5_D JMJC domain-containing 95.3 0.0011 3.7E-08 54.8 -2.5 45 41-85 41-87 (488)
84 2jmi_A Protein YNG1, ING1 homo 95.1 0.0075 2.6E-07 39.0 1.4 27 3-37 47-74 (90)
85 3kv4_A PHD finger protein 8; e 94.9 0.0011 3.7E-08 54.3 -3.6 44 41-84 9-54 (447)
86 3pur_A Lysine-specific demethy 94.9 0.0083 2.8E-07 50.0 1.6 39 47-85 54-93 (528)
87 2lv9_A Histone-lysine N-methyl 94.8 0.017 5.8E-07 37.6 2.6 25 6-37 50-74 (98)
88 1x4i_A Inhibitor of growth pro 94.6 0.0044 1.5E-07 38.2 -0.7 25 5-37 29-53 (70)
89 2rsd_A E3 SUMO-protein ligase 93.3 0.034 1.1E-06 33.7 1.6 32 3-37 32-63 (68)
90 3rsn_A SET1/ASH2 histone methy 91.9 0.13 4.5E-06 37.1 3.4 43 42-84 10-57 (177)
91 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.2 0.04 1.4E-06 36.6 0.1 36 50-85 1-43 (140)
92 2kgg_A Histone demethylase jar 90.5 0.11 3.7E-06 29.7 1.4 28 3-37 25-52 (52)
93 1we9_A PHD finger family prote 89.8 0.13 4.3E-06 30.5 1.4 27 6-37 30-56 (64)
94 3o70_A PHD finger protein 13; 89.5 0.13 4.5E-06 31.2 1.4 25 6-37 41-65 (68)
95 3o7a_A PHD finger protein 13 v 89.0 0.11 3.8E-06 29.6 0.7 25 6-37 26-50 (52)
96 3kqi_A GRC5, PHD finger protei 88.5 0.059 2E-06 33.2 -0.8 30 3-38 31-60 (75)
97 2lq6_A Bromodomain-containing 88.2 0.2 7E-06 31.8 1.6 35 28-67 13-49 (87)
98 1wep_A PHF8; structural genomi 88.1 0.1 3.5E-06 32.4 0.1 29 3-37 33-61 (79)
99 1wee_A PHD finger family prote 87.3 0.24 8.3E-06 30.0 1.6 26 6-37 39-64 (72)
100 1wew_A DNA-binding family prot 86.1 0.12 4.2E-06 32.0 -0.3 34 2-37 37-70 (78)
101 2lbm_A Transcriptional regulat 83.8 0.049 1.7E-06 38.0 -3.3 32 6-37 83-115 (142)
102 2xb1_A Pygopus homolog 2, B-ce 83.2 0.056 1.9E-06 35.6 -3.0 33 6-38 28-60 (105)
103 2ct0_A Non-SMC element 1 homol 83.0 0.29 1E-05 30.1 0.4 44 37-84 16-59 (74)
104 1iym_A EL5; ring-H2 finger, ub 81.8 0.65 2.2E-05 25.8 1.6 43 39-85 8-51 (55)
105 2ri7_A Nucleosome-remodeling f 76.6 0.31 1E-05 34.3 -1.2 28 6-38 31-58 (174)
106 2ect_A Ring finger protein 126 74.1 1.2 4E-05 26.6 1.2 43 39-85 18-60 (78)
107 1n0z_A ZNF265; zinc finger, RN 73.6 4.1 0.00014 22.5 3.3 12 26-37 10-23 (45)
108 3pur_A Lysine-specific demethy 73.4 1.2 3.9E-05 37.2 1.3 31 2-38 63-93 (528)
109 2ecl_A Ring-box protein 2; RNF 73.3 0.72 2.4E-05 28.2 0.0 43 39-85 29-72 (81)
110 2lk0_A RNA-binding protein 5; 72.7 2.3 7.8E-05 21.7 1.9 10 75-84 3-12 (32)
111 2k1p_A Zinc finger RAN-binding 70.5 3.5 0.00012 21.2 2.4 10 28-37 4-13 (33)
112 2kiz_A E3 ubiquitin-protein li 69.3 0.35 1.2E-05 28.3 -2.0 43 39-85 17-59 (69)
113 1x4j_A Ring finger protein 38; 69.3 0.25 8.7E-06 29.6 -2.7 44 38-85 25-68 (75)
114 3ql9_A Transcriptional regulat 68.4 0.23 7.9E-06 34.0 -3.3 32 6-37 77-109 (129)
115 2ecm_A Ring finger and CHY zin 67.4 0.63 2.2E-05 25.8 -1.1 43 39-85 8-51 (55)
116 3a1b_A DNA (cytosine-5)-methyl 67.1 0.66 2.2E-05 32.8 -1.3 45 38-85 81-133 (159)
117 2l0b_A E3 ubiquitin-protein li 64.0 0.57 1.9E-05 29.3 -1.9 44 38-85 42-85 (91)
118 1weq_A PHD finger protein 7; s 61.9 6.2 0.00021 24.9 2.7 35 48-85 43-78 (85)
119 4ap4_A E3 ubiquitin ligase RNF 61.3 0.11 3.6E-06 34.3 -6.1 31 51-85 91-121 (133)
120 3a9j_C Mitogen-activated prote 60.1 7.8 0.00027 19.7 2.5 12 74-85 5-16 (34)
121 2d9g_A YY1-associated factor 2 58.8 22 0.00077 20.1 5.4 20 73-92 7-34 (53)
122 2ep4_A Ring finger protein 24; 58.0 0.59 2E-05 27.7 -2.6 44 38-85 17-60 (74)
123 2d8y_A Eplin protein; LIM doma 57.7 16 0.00055 22.2 4.2 27 38-66 17-43 (91)
124 2lbz_A Thuricin17, thurincin H 56.6 4.6 0.00016 20.0 1.1 15 30-44 1-15 (31)
125 3nw0_A Non-structural maintena 55.9 2.8 9.6E-05 31.1 0.4 44 37-84 181-224 (238)
126 1kbe_A Kinase suppressor of RA 53.8 8.2 0.00028 21.6 2.1 29 37-67 15-43 (49)
127 1nj3_A NPL4; NZF domain, rubre 52.7 11 0.00037 18.7 2.3 10 76-85 5-14 (31)
128 1v87_A Deltex protein 2; ring- 52.5 1.2 4.1E-05 28.6 -1.9 35 51-85 55-90 (114)
129 1faq_A RAF-1; transferase, ser 52.3 8.6 0.00029 21.1 2.0 28 38-67 16-43 (52)
130 1e8j_A Rubredoxin; iron-sulfur 47.8 9.3 0.00032 21.6 1.7 11 28-38 34-44 (52)
131 2egp_A Tripartite motif-contai 47.5 10 0.00035 22.1 2.0 30 56-85 29-61 (79)
132 4rxn_A Rubredoxin; electron tr 46.7 6.7 0.00023 22.5 0.9 11 28-38 34-44 (54)
133 2cu8_A Cysteine-rich protein 2 45.7 20 0.00068 20.9 3.1 9 58-66 29-37 (76)
134 3kv5_D JMJC domain-containing 45.4 2.5 8.7E-05 34.7 -1.4 31 2-38 57-87 (488)
135 2pv0_B DNA (cytosine-5)-methyl 45.4 1.5 5.2E-05 35.1 -2.7 46 38-86 95-148 (386)
136 3gj3_B Nuclear pore complex pr 44.8 16 0.00055 18.7 2.1 12 74-85 4-15 (33)
137 2d8s_A Cellular modulator of i 43.0 11 0.00038 22.9 1.6 26 58-85 41-66 (80)
138 4a0k_B E3 ubiquitin-protein li 41.1 5.7 0.00019 26.3 0.0 26 55-84 82-107 (117)
139 2enz_A NPKC-theta, protein kin 41.0 28 0.00095 20.0 3.1 30 38-67 25-56 (65)
140 3k1l_B Fancl; UBC, ring, RWD, 40.8 11 0.00039 29.9 1.7 33 38-70 310-347 (381)
141 2crc_A Ubiquitin conjugating e 40.4 34 0.0012 19.3 3.3 18 75-92 8-33 (52)
142 3kv4_A PHD finger protein 8; e 39.0 2.6 8.8E-05 34.4 -2.3 30 2-37 25-54 (447)
143 1yk4_A Rubredoxin, RD; electro 38.9 10 0.00036 21.4 0.9 11 28-38 33-43 (52)
144 1wig_A KIAA1808 protein; LIM d 38.8 52 0.0018 19.0 4.2 10 81-90 29-38 (73)
145 2v3b_B Rubredoxin 2, rubredoxi 38.4 11 0.00037 21.6 0.9 11 28-38 34-44 (55)
146 2kn9_A Rubredoxin; metalloprot 38.3 15 0.00051 22.9 1.6 11 28-38 58-68 (81)
147 2jrp_A Putative cytoplasmic pr 38.0 7.4 0.00025 24.3 0.2 31 49-92 16-50 (81)
148 3l11_A E3 ubiquitin-protein li 38.0 13 0.00043 23.7 1.3 27 56-85 32-58 (115)
149 6rxn_A Rubredoxin; electron tr 37.4 19 0.00063 19.9 1.8 13 72-85 26-38 (46)
150 3dpl_R Ring-box protein 1; ubi 37.3 4.7 0.00016 26.1 -0.9 30 52-85 68-97 (106)
151 1a7i_A QCRP2 (LIM1); LIM domai 37.1 14 0.00047 21.9 1.3 26 39-66 10-35 (81)
152 1ptq_A Protein kinase C delta 36.5 12 0.00041 20.2 0.9 30 38-67 13-44 (50)
153 2ebq_A Nuclear pore complex pr 35.4 40 0.0014 18.7 3.0 20 72-91 6-33 (47)
154 2ehe_A Four and A half LIM dom 34.9 67 0.0023 18.7 4.3 13 77-90 38-50 (82)
155 1x4l_A Skeletal muscle LIM-pro 34.8 48 0.0017 18.8 3.6 32 81-122 33-64 (72)
156 2ecj_A Tripartite motif-contai 34.7 8.9 0.00031 20.9 0.2 27 56-83 32-58 (58)
157 2ecy_A TNF receptor-associated 33.3 4.5 0.00015 23.2 -1.4 27 56-85 32-58 (66)
158 2eli_A Protein kinase C alpha 32.4 35 0.0012 20.8 2.7 30 38-67 30-61 (85)
159 1dx8_A Rubredoxin; electron tr 32.2 15 0.00052 22.1 0.9 12 27-38 37-48 (70)
160 1v5n_A PDI-like hypothetical p 31.9 14 0.00048 23.1 0.8 31 38-69 49-79 (89)
161 1x63_A Skeletal muscle LIM-pro 31.8 55 0.0019 19.0 3.5 36 77-123 38-73 (82)
162 2cuq_A Four and A half LIM dom 31.4 59 0.002 18.8 3.6 33 81-123 39-71 (80)
163 2ebv_A Nuclear pore complex pr 31.2 48 0.0016 19.1 2.9 15 71-85 25-39 (57)
164 3gj5_B Nuclear pore complex pr 31.0 34 0.0012 17.6 2.0 12 74-85 4-15 (34)
165 2ebr_A Nuclear pore complex pr 30.5 41 0.0014 18.6 2.5 14 72-85 6-19 (47)
166 1bor_A Transcription factor PM 30.3 46 0.0016 18.2 2.8 23 56-85 23-45 (56)
167 2fnf_X Putative RAS effector N 30.1 32 0.0011 20.4 2.2 28 39-67 38-65 (72)
168 2enn_A NPKC-theta, protein kin 29.9 24 0.00083 21.1 1.6 30 38-67 36-67 (77)
169 2d8t_A Dactylidin, ring finger 29.8 6.2 0.00021 22.9 -1.2 26 56-85 32-57 (71)
170 2ysl_A Tripartite motif-contai 29.6 5.5 0.00019 23.0 -1.4 29 56-85 37-65 (73)
171 2l4z_A DNA endonuclease RBBP8, 29.1 55 0.0019 21.2 3.4 36 77-123 83-120 (123)
172 1vyx_A ORF K3, K3RING; zinc-bi 28.6 11 0.00039 21.6 -0.1 44 38-84 8-54 (60)
173 3b08_B Ranbp-type and C3HC4-ty 28.4 55 0.0019 19.3 2.9 17 76-92 7-31 (64)
174 1nyp_A Pinch protein; LIM doma 28.2 45 0.0015 18.6 2.6 14 77-91 26-39 (66)
175 2yuu_A NPKC-delta, protein kin 28.2 41 0.0014 20.3 2.5 30 38-67 30-61 (83)
176 1pft_A TFIIB, PFTFIIBN; N-term 28.2 36 0.0012 18.5 2.0 15 48-62 21-35 (50)
177 1x61_A Thyroid receptor intera 27.8 59 0.002 18.4 3.1 36 81-126 31-66 (72)
178 3lrq_A E3 ubiquitin-protein li 27.0 4.2 0.00014 25.6 -2.5 42 39-85 25-66 (100)
179 1x64_A Alpha-actinin-2 associa 26.4 83 0.0028 18.7 3.7 12 112-123 70-81 (89)
180 2co8_A NEDD9 interacting prote 26.3 43 0.0015 19.9 2.3 9 58-66 35-43 (82)
181 1s24_A Rubredoxin 2; electron 26.1 24 0.00081 22.2 1.1 11 28-38 66-76 (87)
182 2xqn_T Testin, TESS; metal-bin 25.3 36 0.0012 21.7 1.9 9 58-66 23-31 (126)
183 2pk7_A Uncharacterized protein 25.2 36 0.0012 20.3 1.7 14 49-62 24-37 (69)
184 2l3k_A Rhombotin-2, linker, LI 24.6 1.1E+02 0.0036 19.5 4.2 8 58-65 29-36 (123)
185 1jm7_A BRCA1, breast cancer ty 24.4 10 0.00036 23.7 -0.9 29 56-85 38-66 (112)
186 4cpa_I Metallocarboxypeptidase 24.3 29 0.001 18.1 1.0 24 61-84 4-28 (38)
187 2hf1_A Tetraacyldisaccharide-1 24.2 34 0.0012 20.3 1.5 13 49-61 24-36 (68)
188 2js4_A UPF0434 protein BB2007; 23.8 35 0.0012 20.4 1.5 16 48-63 23-38 (70)
189 2jr6_A UPF0434 protein NMA0874 23.6 36 0.0012 20.2 1.5 14 49-62 24-37 (68)
190 1y8f_A UNC-13 homolog A, MUNC1 23.6 39 0.0013 19.4 1.7 30 38-67 26-57 (66)
191 1b8t_A Protein (CRP1); LIM dom 23.5 42 0.0014 23.3 2.1 27 38-66 9-35 (192)
192 3gj8_B Nuclear pore complex pr 23.3 48 0.0016 20.6 2.1 13 73-85 61-73 (92)
193 2d8x_A Protein pinch; LIM doma 21.6 71 0.0024 17.9 2.6 35 80-124 28-62 (70)
194 2j9u_B VPS36, vacuolar protein 21.4 51 0.0018 20.2 1.9 11 75-85 15-25 (76)
195 2dlo_A Thyroid receptor-intera 21.4 94 0.0032 18.0 3.2 36 77-123 36-72 (81)
196 1j2o_A FLIN2, fusion of rhombo 21.2 1E+02 0.0035 19.3 3.5 27 39-67 6-32 (114)
197 2jny_A Uncharacterized BCR; st 21.0 44 0.0015 19.8 1.5 14 49-62 26-39 (67)
198 2cor_A Pinch protein; LIM doma 20.7 1.4E+02 0.0046 17.3 4.3 10 81-90 39-48 (79)
199 3uej_A NPKC-delta, protein kin 20.3 34 0.0012 19.6 0.9 30 38-67 22-53 (65)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-22 Score=134.43 Aligned_cols=80 Identities=34% Similarity=1.019 Sum_probs=71.6
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+||++||++++..+ .+..|+|++|++|.+|++.++.+.||+|+.|+++||++|++|++..+|.++|+|+.|..
T Consensus 30 ~~~H~~Cl~~~~~~~------~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 30 QHYHGMCLDIAVTPL------KRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CEECTTTTTCCCCTT------TSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CCcChHHhCCccccc------cccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 789999999885432 45699999999999999988888999999999999999999999999999999999988
Q ss_pred cccCCC
Q psy3924 86 CLTCGA 91 (131)
Q Consensus 86 c~~Cg~ 91 (131)
|..+++
T Consensus 104 c~~g~s 109 (111)
T 2ysm_A 104 CISGPS 109 (111)
T ss_dssp CSCSCC
T ss_pred cCCCCC
Confidence 877654
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.82 E-value=2.3e-21 Score=132.80 Aligned_cols=76 Identities=30% Similarity=0.977 Sum_probs=68.0
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
.+||++||+++.. +.+.++...|+|++|++|.+|++.++++.||+||.|+++||++|++|++..+|.++|+|+.|.
T Consensus 31 ~~~H~~Cl~~~~~---~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 31 RSGHPTCLQFTLN---MTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CEECTTTTTCCHH---HHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred CccchhhCCChhh---hhhccCCCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 7899999998753 223456779999999999999998888999999999999999999999999999999999885
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.80 E-value=1e-20 Score=129.08 Aligned_cols=77 Identities=27% Similarity=0.901 Sum_probs=66.4
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcccccccccC-CCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRH-DEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
.+||++||+.... ..+.+...+|+|++|++|.+|++.+ +.+.||+||.|+++||++|++|++.++|+++|+|+.|+
T Consensus 34 ~~~H~~Cl~~~~~---~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 34 NSGHPSCLKFSPE---LTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CEECHHHHTCCHH---HHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred CCCCCchhcCCHH---HHHHhhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 6899999986422 2334568899999999999999864 46799999999999999999999999999999999997
Q ss_pred c
Q psy3924 85 Q 85 (131)
Q Consensus 85 ~ 85 (131)
.
T Consensus 111 ~ 111 (112)
T 3v43_A 111 P 111 (112)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.73 E-value=2.4e-18 Score=108.41 Aligned_cols=55 Identities=42% Similarity=1.131 Sum_probs=52.9
Q ss_pred CccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCC-CeeccCCCc
Q psy3924 30 GWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRG-TWKCKWCAQ 85 (131)
Q Consensus 30 ~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~ 85 (131)
+|+|++| +|.+|++.++++.||+||.|+++||++||+|||.++|++ +|+|+.|+.
T Consensus 13 ~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 13 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 8999999 999999988899999999999999999999999999999 999999974
No 5
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=104.39 Aligned_cols=57 Identities=40% Similarity=1.126 Sum_probs=53.5
Q ss_pred CCCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCC-CeeccCCCc
Q psy3924 28 SKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRG-TWKCKWCAQ 85 (131)
Q Consensus 28 ~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~ 85 (131)
...|+|++| +|.+|++.++++.||+||.|+++||++||+|||..+|++ +|+|+.|..
T Consensus 19 ~~~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 19 DPEKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 358999999 999999988899999999999999999999999999999 999999973
No 6
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=104.76 Aligned_cols=56 Identities=41% Similarity=1.101 Sum_probs=52.9
Q ss_pred CCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCC-eeccCCCc
Q psy3924 29 KGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGT-WKCKWCAQ 85 (131)
Q Consensus 29 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~-W~C~~C~~ 85 (131)
.+|+|+.| .|.+|++.++++.||+||.|+++||++||+|||..+|+++ |+|+.|+.
T Consensus 20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 48999999 9999999988999999999999999999999999999998 99999973
No 7
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=105.87 Aligned_cols=80 Identities=25% Similarity=0.666 Sum_probs=66.4
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCccccCCC--------------cccccccCCCC
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGA--------------TGYHIYCTDPP 102 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~c~~Cg~--------------~~~~~~c~~pp 102 (131)
.+|.+|+..++.+.||.|+.|+++||++|+.+++..++++.|+|+.|++|..|+. +.||++|++||
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~pp 87 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPV 87 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSC
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCc
Confidence 3688888877667789999999999999999988878889999999998877764 35999999999
Q ss_pred CCCccccCCCCc-cccc
Q psy3924 103 LDHIIFVQDKIR-PKRL 118 (131)
Q Consensus 103 l~~~~~~~~~~~-~~~~ 118 (131)
|.++| +|.|. +.+.
T Consensus 88 l~~~P--~g~W~C~~C~ 102 (111)
T 2ysm_A 88 MKSVP--TNGWKCKNCR 102 (111)
T ss_dssp CSSCC--SSCCCCHHHH
T ss_pred cccCC--CCCcCCcCCc
Confidence 99998 45654 3443
No 8
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.58 E-value=3.5e-16 Score=106.85 Aligned_cols=78 Identities=28% Similarity=0.648 Sum_probs=63.6
Q ss_pred CCCCCceeeCcCCCcccCCCCCCCCC---CCCCCCeeccCCCccccCCC--------------cccccccCCCCCCCccc
Q psy3924 46 HDEGRLILCDECDISYHIYCTDPPLD---HIPRGTWKCKWCAQCLTCGA--------------TGYHIYCTDPPLDHIIF 108 (131)
Q Consensus 46 ~~~~~ll~Cd~C~~~~H~~Cl~p~l~---~~p~~~W~C~~C~~c~~Cg~--------------~~~~~~c~~ppl~~~~~ 108 (131)
++++.||.|+.|+++||++|++++.. .++.+.|+|+.|+.|..|+. ..||++|++|||.++|
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P- 96 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPP- 96 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCC-
T ss_pred CCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCC-
Confidence 45789999999999999999987632 35678999999988877764 3699999999999998
Q ss_pred cCCCC-cccccchhhhhh
Q psy3924 109 VQDKI-RPKRLTTYKADA 125 (131)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~ 125 (131)
+|.| ++.+...++++|
T Consensus 97 -~g~W~C~~C~~~~~~k~ 113 (114)
T 2kwj_A 97 -EGSWSCHLCWELLKEKA 113 (114)
T ss_dssp -SSCCCCHHHHHHHHHTC
T ss_pred -CCCeECccccchhhccc
Confidence 4555 557777777765
No 9
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-15 Score=100.11 Aligned_cols=59 Identities=37% Similarity=0.986 Sum_probs=55.0
Q ss_pred cCCCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 27 LSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 27 ~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
....|.+.+..+|.+|++.++.+.||+||.|+++||++|+.||+..+|.++|+|+.|+.
T Consensus 7 ~~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 7 GHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45689999999999999987788999999999999999999999999999999999974
No 10
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.53 E-value=3e-15 Score=88.40 Aligned_cols=48 Identities=38% Similarity=1.132 Sum_probs=44.7
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|.+|++.++++.||+||.|+++||++|++|++.++|+++|+|+.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588899888888999999999999999999999999999999999974
No 11
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=108.58 Aligned_cols=55 Identities=42% Similarity=1.131 Sum_probs=47.9
Q ss_pred CccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCC-CeeccCCCc
Q psy3924 30 GWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRG-TWKCKWCAQ 85 (131)
Q Consensus 30 ~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~ 85 (131)
+|.|..| .|.+|++.++++.||+||.|+++||++|++|||..+|.+ +|+|+.|..
T Consensus 169 ~w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 169 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CEecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 7999999 999999988899999999999999999999999999999 999999973
No 12
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.47 E-value=6.1e-14 Score=91.64 Aligned_cols=57 Identities=28% Similarity=0.785 Sum_probs=50.9
Q ss_pred cCCCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCcc
Q psy3924 27 LSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86 (131)
Q Consensus 27 ~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~c 86 (131)
....|.-..-.+|.+|++ ++.||+||.|+++||++|+.|++.++|.++|+|+.|+..
T Consensus 16 ~~~~~~d~n~~~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCCSSSSSSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccccCCCCCcCcCcCC---CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456788878888999986 578999999999999999999999999999999999863
No 13
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.46 E-value=8.8e-15 Score=99.56 Aligned_cols=67 Identities=30% Similarity=0.680 Sum_probs=55.1
Q ss_pred CCCCCceeeCcCCCcccCCCCCCC--C-CCCCCCCeeccCCCccccCCCc---------------ccccccCCCCCCCcc
Q psy3924 46 HDEGRLILCDECDISYHIYCTDPP--L-DHIPRGTWKCKWCAQCLTCGAT---------------GYHIYCTDPPLDHII 107 (131)
Q Consensus 46 ~~~~~ll~Cd~C~~~~H~~Cl~p~--l-~~~p~~~W~C~~C~~c~~Cg~~---------------~~~~~c~~ppl~~~~ 107 (131)
+.++.||.|+.|++.||++|++.. + ..++.+.|+|++|+.|..|+.. .||++|++|||.++|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P 100 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMP 100 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCC
Confidence 567899999999999999999742 2 2356789999999999888742 499999999999998
Q ss_pred ccCCCCc
Q psy3924 108 FVQDKIR 114 (131)
Q Consensus 108 ~~~~~~~ 114 (131)
+|.|-
T Consensus 101 --~~~W~ 105 (112)
T 3v43_A 101 --KGMWI 105 (112)
T ss_dssp --SSCCC
T ss_pred --CCCeE
Confidence 55654
No 14
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.42 E-value=1.4e-13 Score=84.16 Aligned_cols=45 Identities=47% Similarity=1.153 Sum_probs=40.5
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+|.+|+. ++.||+||.|+++||++|+.|++.++|.++|+|+.|+.
T Consensus 11 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 11 FCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred cCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 4666664 67899999999999999999999999999999999975
No 15
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.40 E-value=8.6e-14 Score=86.52 Aligned_cols=45 Identities=22% Similarity=0.637 Sum_probs=39.9
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|.+|+. ++.||+||.|+++||++|++|++..+|+++|+|+.|..
T Consensus 14 ~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 3566664 67899999999999999999999999999999999974
No 16
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=81.68 Aligned_cols=44 Identities=45% Similarity=1.245 Sum_probs=39.1
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
+|.+|++ ++.||.||.|+++||++|+.|++..+|.++|+|+.|.
T Consensus 11 ~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4666665 5789999999999999999999999999999999885
No 17
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.34 E-value=3.3e-13 Score=83.75 Aligned_cols=45 Identities=47% Similarity=1.155 Sum_probs=39.7
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+|.+|+. ++.||+||.|+++||++|+.|++..+|.++|+|+.|..
T Consensus 10 ~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 10 ECAVCRD---GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCCC---CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4556654 57899999999999999999999999999999999974
No 18
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.34 E-value=3e-13 Score=82.37 Aligned_cols=44 Identities=45% Similarity=1.245 Sum_probs=39.8
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
+|.+|++ ++.||.||.|+++||++|++|++..+|.++|+|+.|.
T Consensus 7 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 7 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp SCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 4677775 5799999999999999999999999999999999986
No 19
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=3.9e-13 Score=82.20 Aligned_cols=46 Identities=43% Similarity=1.170 Sum_probs=40.9
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+|.+|++ ++.||+||.|+++||++|++|++.++|.++|+|+.|+.
T Consensus 12 ~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 12 DYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45667765 67999999999999999999999999999999999974
No 20
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.30 E-value=6e-13 Score=87.00 Aligned_cols=49 Identities=33% Similarity=0.761 Sum_probs=42.8
Q ss_pred cccccccccCC--CCCceeeCcCCCcccCCCCCCCCCC----CCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRHD--EGRLILCDECDISYHIYCTDPPLDH----IPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~ 85 (131)
.+|.+|++... .+.||+||.|+++||++|+.|++.. +|.+.|+|+.|+.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 46888887644 4789999999999999999999984 8999999999975
No 21
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.25 E-value=9.3e-13 Score=81.40 Aligned_cols=49 Identities=31% Similarity=0.898 Sum_probs=41.5
Q ss_pred ccccccccc--CCCCCceeeCcCCCcccCCCCCCCCCC--C-CCCCeeccCCCc
Q psy3924 37 TVCEGCAQR--HDEGRLILCDECDISYHIYCTDPPLDH--I-PRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~--~-p~~~W~C~~C~~ 85 (131)
.+|.+|++. .+.+.||+||.|+++||++|+.|++.+ + |.++|+|+.|..
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 357788765 345899999999999999999999876 3 889999999875
No 22
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-12 Score=80.89 Aligned_cols=47 Identities=34% Similarity=0.944 Sum_probs=40.1
Q ss_pred cccccccccC--CCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRH--DEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+|.+|++.+ +++.||+||.|+++||++|+.|+ .+|+++|+|+.|+.
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcC
Confidence 4677887654 67899999999999999999987 48999999999864
No 23
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.18 E-value=1.1e-11 Score=83.63 Aligned_cols=64 Identities=30% Similarity=0.842 Sum_probs=50.0
Q ss_pred cccccccccCCCCCceeeC--cCCCcccCCCCCCCCCCCCCCCeeccCCCccccCCC----------cccccccCCCCCC
Q psy3924 37 TVCEGCAQRHDEGRLILCD--ECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGA----------TGYHIYCTDPPLD 104 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~c~~Cg~----------~~~~~~c~~ppl~ 104 (131)
.+|.+|+. +++||.|| .|+++||++|+. |..+|+|+|+|+.|. |..||. ++|+..++++.|-
T Consensus 16 ~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~-C~~C~k~~~~~C~~Cp~sfC~~c~~g~l~ 89 (107)
T 4gne_A 16 DYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ-CDECSSAAVSFCEFCPHSFCKDHEKGALV 89 (107)
T ss_dssp SSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB-CTTTCSBCCEECSSSSCEECTTTCTTSCE
T ss_pred CCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC-CCcCCCCCCcCcCCCCcchhhhccCCcce
Confidence 35677764 78899999 899999999997 889999999999986 555543 4677777777664
Q ss_pred Cc
Q psy3924 105 HI 106 (131)
Q Consensus 105 ~~ 106 (131)
..
T Consensus 90 ~~ 91 (107)
T 4gne_A 90 PS 91 (107)
T ss_dssp EC
T ss_pred ec
Confidence 33
No 24
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.16 E-value=1.7e-11 Score=89.49 Aligned_cols=46 Identities=33% Similarity=0.998 Sum_probs=41.5
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCcc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~c 86 (131)
+|.+|++ +|.+|+||.|+++||++|+.|++..+|.++|+|+.|+.-
T Consensus 6 ~C~~C~~---~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 6 WCAVCQN---GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCTTTCC---CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred ccccCCC---CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4677775 678999999999999999999999999999999999864
No 25
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.13 E-value=2.3e-11 Score=90.41 Aligned_cols=47 Identities=32% Similarity=0.938 Sum_probs=41.6
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCcc
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~c 86 (131)
.+|.+|++ ++.||+||.|+++||++|+.|++..+|.++|+|+.|+.-
T Consensus 8 ~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQN---GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCC---CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCC---CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 35677775 667999999999999999999999999999999999864
No 26
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.12 E-value=3.6e-11 Score=88.46 Aligned_cols=45 Identities=31% Similarity=1.077 Sum_probs=41.2
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|.+|+. ++.+|+||.|+++||++|+.|++..+|.|+|+|+.|+.
T Consensus 4 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 4 ICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CBTTTCC---CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred cCccCCC---CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 5778875 67899999999999999999999999999999999985
No 27
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.08 E-value=8.2e-12 Score=81.58 Aligned_cols=47 Identities=34% Similarity=0.960 Sum_probs=39.8
Q ss_pred cccccccccC--CCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRH--DEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+|.+|++.+ +.+.||+||.|+++||++|+.|++ +|.++|+|+.|..
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 3577787654 567999999999999999999874 7899999999974
No 28
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.08 E-value=1.1e-10 Score=78.78 Aligned_cols=65 Identities=23% Similarity=0.526 Sum_probs=55.0
Q ss_pred CccceeeccccCCCCCCCCCccccccCCCccCccCcccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeec
Q psy3924 2 NCDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKC 80 (131)
Q Consensus 2 ~~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C 80 (131)
+|+. +||+.||. +..+|.+ +|+||.| .|.+|++.. .+.|..|+++||..|+++.|...+...|+|
T Consensus 34 ~Cp~-~fH~~Cl~--L~~~P~g------~W~Cp~c-~C~~C~k~~----~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 34 DCPK-AYHLLCLN--LTQPPYG------KWECPWH-QCDECSSAA----VSFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp TCCC-EECTGGGT--CSSCCSS------CCCCGGG-BCTTTCSBC----CEECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCc-ccccccCc--CCcCCCC------CEECCCC-CCCcCCCCC----CcCcCCCCcchhhhccCCcceecCCCCcee
Confidence 3664 99999998 4466655 8999999 599999743 288999999999999999998888889987
No 29
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.07 E-value=4e-11 Score=75.78 Aligned_cols=49 Identities=33% Similarity=0.699 Sum_probs=42.6
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+|.+|++..+++.||.||.|+.+||+.|+.+++..++.++|+|+.|..
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3577788877777899999999999999999988888888999999963
No 30
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.90 E-value=1.2e-09 Score=72.51 Aligned_cols=44 Identities=39% Similarity=0.858 Sum_probs=38.2
Q ss_pred cccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 41 GCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 41 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+|+...+.+.||.|+.|.++||+.|+.+++..+|. .|+|+.|+.
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~ 75 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQP 75 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcC
Confidence 56666678899999999999999999998887775 899999973
No 31
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.72 E-value=8.6e-09 Score=64.60 Aligned_cols=44 Identities=41% Similarity=0.943 Sum_probs=36.4
Q ss_pred ccccccccCCCCCceeeCc--CC-CcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDE--CD-ISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+| +|++.. .+.||.||. |. .+||+.|+. |...|.+.|+|+.|..
T Consensus 18 ~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 18 YC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp CS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred EE-ECCCCC-CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCc
Confidence 45 577654 368999999 77 699999997 7788889999999975
No 32
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.63 E-value=4.8e-09 Score=63.67 Aligned_cols=44 Identities=41% Similarity=0.943 Sum_probs=36.0
Q ss_pred ccccccccCCCCCceeeCc--CC-CcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDE--CD-ISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+| +|++.. .+.||.||. |. .+||+.|+. +..+|.+.|+|+.|..
T Consensus 12 ~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45 677764 478999999 55 799999997 7888889999998863
No 33
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.62 E-value=2.9e-08 Score=64.99 Aligned_cols=45 Identities=42% Similarity=0.941 Sum_probs=36.7
Q ss_pred cccccccccCCCCCceeeCc--CC-CcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRHDEGRLILCDE--CD-ISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+| +|++.. .+.||.||. |. .+||+.|+. |...|.+.|+|+.|+.
T Consensus 37 ~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 37 TYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp BCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCC
T ss_pred cEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccC
Confidence 345 777754 368999999 66 799999997 7778889999999974
No 34
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.57 E-value=9.2e-09 Score=62.24 Aligned_cols=44 Identities=41% Similarity=0.946 Sum_probs=36.0
Q ss_pred ccccccccCCCCCceeeCc--CC-CcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDE--CD-ISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+| +|++.. .+.||.||. |. .+||+.|+. ++..|.+.|+|+.|+.
T Consensus 11 yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45 677754 468999999 77 699999997 7788889999998863
No 35
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.51 E-value=3.7e-08 Score=64.42 Aligned_cols=41 Identities=29% Similarity=0.737 Sum_probs=34.1
Q ss_pred cccccCCCCCceeeCcCC---CcccCCCCCCCCCCCCCCCeeccC-CC
Q psy3924 41 GCAQRHDEGRLILCDECD---ISYHIYCTDPPLDHIPRGTWKCKW-CA 84 (131)
Q Consensus 41 ~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~p~l~~~p~~~W~C~~-C~ 84 (131)
+|++... +.||.||.|+ .+||+.|+. |...|.+.|+|+. |.
T Consensus 30 iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 30 FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 5666543 5799999977 899999996 7778889999999 86
No 36
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.51 E-value=1.7e-08 Score=61.61 Aligned_cols=44 Identities=36% Similarity=0.868 Sum_probs=35.4
Q ss_pred ccccccccCCCCCceeeCc--CC-CcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDE--CD-ISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+| +|++.. .+.||.||. |. .+||+.|+. |+..|.+.|+|+.|+.
T Consensus 13 yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 13 YC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred EE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 45 677754 468999999 54 999999997 6677889999999864
No 37
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.46 E-value=1.4e-08 Score=71.52 Aligned_cols=45 Identities=31% Similarity=0.690 Sum_probs=39.2
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCC-------CCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDH-------IPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~-------~p~~~W~C~~C~~ 85 (131)
+|.+|+. ++.||.||.|.++||..|+.|++.. .|.++|.|+.|..
T Consensus 65 ~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 65 QCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred eecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4888885 8899999999999999999988862 4889999999973
No 38
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.32 E-value=2.5e-07 Score=57.37 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=35.4
Q ss_pred cccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 41 GCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 41 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
+|++..+++.||.|+.|...||..|+......++ ..|+|+.|.
T Consensus 23 iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~ 65 (68)
T 3o70_A 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 65 (68)
T ss_dssp TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHH
T ss_pred ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCC
Confidence 7777777778999999999999999986544444 589999885
No 39
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=2e-07 Score=58.11 Aligned_cols=41 Identities=34% Similarity=0.826 Sum_probs=33.3
Q ss_pred ccccCCCCCceeeCcCC---CcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 42 CAQRHDEGRLILCDECD---ISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 42 C~~~~~~~~ll~Cd~C~---~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|++.. .+.||.||.|+ .+||+.|+. |...|.+.|+|+.|..
T Consensus 11 C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 11 CNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTA 54 (70)
T ss_dssp TSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHH
T ss_pred cCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCc
Confidence 55543 45899999985 899999997 6667889999999863
No 40
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.12 E-value=7.4e-07 Score=54.22 Aligned_cols=47 Identities=23% Similarity=0.602 Sum_probs=34.9
Q ss_pred cccccccC-CCCCceeeCcCCCcccCCCCCCCCCCCC-CCCeeccCCCc
Q psy3924 39 CEGCAQRH-DEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~ 85 (131)
|.+|++.. +.+.||.|+.|...||..|+........ ...|+|+.|+.
T Consensus 9 C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 44666654 3678999999999999999975433222 26899999974
No 41
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.10 E-value=8.1e-07 Score=52.08 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=34.5
Q ss_pred cccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 41 GCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 41 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
+|++..+++.||.|+.|...||..|+......++ ..|+|+.|+
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence 5777767789999999999999999985543333 589999875
No 42
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.08 E-value=1.4e-06 Score=54.26 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=35.9
Q ss_pred cccccccccCC-CCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 37 TVCEGCAQRHD-EGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 37 ~~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
..| +|++..+ ++.||.|+.|...||..|+...........|+|+.|+.
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 345 5777654 45799999999999999998543323346899999864
No 43
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.00 E-value=1.7e-07 Score=64.99 Aligned_cols=44 Identities=34% Similarity=0.759 Sum_probs=37.0
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCC-----CC--CCCCeeccCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLD-----HI--PRGTWKCKWCA 84 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-----~~--p~~~W~C~~C~ 84 (131)
+|.+|+. +++|+.||.|.++||..|+.|++. ++ +.++|.|..|.
T Consensus 59 ~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 59 QCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred cCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 4777774 899999999999999999998743 33 78899999986
No 44
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.99 E-value=8.5e-07 Score=52.01 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=34.1
Q ss_pred ccccccccCC-CCCceeeC-cCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 38 VCEGCAQRHD-EGRLILCD-ECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 38 ~C~~C~~~~~-~~~ll~Cd-~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
.|-+|++..+ ++.||.|| .|+..||..|++-.........|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3557887754 67899999 89999999999733222123689999885
No 45
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.92 E-value=1.4e-05 Score=53.81 Aligned_cols=38 Identities=26% Similarity=0.548 Sum_probs=29.4
Q ss_pred CCCceeeCcCCCcccCCCCCCCCCCCCC----CCeeccCCCc
Q psy3924 48 EGRLILCDECDISYHIYCTDPPLDHIPR----GTWKCKWCAQ 85 (131)
Q Consensus 48 ~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~----~~W~C~~C~~ 85 (131)
...||.|+.|+.+||..|+.+....+.. ..|.|+.|..
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4568999999999999999876543332 3499999974
No 46
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.78 E-value=2.3e-05 Score=48.64 Aligned_cols=43 Identities=33% Similarity=0.757 Sum_probs=30.3
Q ss_pred CCCeeccCCCccccCCC--------------cccccccCCCCCCCccccCCCCccccc
Q psy3924 75 RGTWKCKWCAQCLTCGA--------------TGYHIYCTDPPLDHIIFVQDKIRPKRL 118 (131)
Q Consensus 75 ~~~W~C~~C~~c~~Cg~--------------~~~~~~c~~ppl~~~~~~~~~~~~~~~ 118 (131)
...|+|+.| +|..|+. ..||++|++|||.++|.+..=+++.+.
T Consensus 11 ~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 11 DVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67 (70)
T ss_dssp CTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTS
T ss_pred CCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCcc
Confidence 347899988 6666652 479999999999999943333444443
No 47
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.77 E-value=8.6e-07 Score=55.77 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=34.5
Q ss_pred cccccCCCCCceeeCcCCCcccCCCCCCCCCCC-----CCCCeeccCCCc
Q psy3924 41 GCAQRHDEGRLILCDECDISYHIYCTDPPLDHI-----PRGTWKCKWCAQ 85 (131)
Q Consensus 41 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~-----p~~~W~C~~C~~ 85 (131)
+|++..+.+.||.|+.|...||..|+....... ....|+|+.|+.
T Consensus 20 ~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 678877778999999999999999997332110 246899998863
No 48
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.76 E-value=3e-06 Score=53.67 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=34.3
Q ss_pred cccccCC-CCCceeeCcCCCcccCCCCCCCCCCC-CCCCeeccCCCc
Q psy3924 41 GCAQRHD-EGRLILCDECDISYHIYCTDPPLDHI-PRGTWKCKWCAQ 85 (131)
Q Consensus 41 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~ 85 (131)
+|++..+ .+.||.|+.|...||..|+.-..... ....|+|+.|..
T Consensus 16 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 6777654 78999999999999999997332211 135899999985
No 49
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.75 E-value=5.2e-06 Score=55.48 Aligned_cols=46 Identities=28% Similarity=0.806 Sum_probs=35.4
Q ss_pred ccccccccC-CCCCceeeC-cCCCcccCCCCCCCCCC--------CCCCCeeccCCCc
Q psy3924 38 VCEGCAQRH-DEGRLILCD-ECDISYHIYCTDPPLDH--------IPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~-~~~~ll~Cd-~C~~~~H~~Cl~p~l~~--------~p~~~W~C~~C~~ 85 (131)
.|.+|++.- +.+.++.|+ .|..+||..|+. |+. .+...|+|+.|..
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTG--MTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT--CCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCC--cCHHHHHhhccCCCCCEECccccC
Confidence 356677752 356899998 999999999997 432 3567899999985
No 50
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.74 E-value=5.8e-06 Score=52.28 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=35.5
Q ss_pred ccccccccCCCCCceeeC--cCCCcccCCCCCCCCCC-----CCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCD--ECDISYHIYCTDPPLDH-----IPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~-----~p~~~W~C~~C~~ 85 (131)
.| +|++..+.+.||.|+ .|...||..|+.-+... .....|+|+.|+.
T Consensus 18 ~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred Ee-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 45 678876678999999 99999999999733221 1135899999864
No 51
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.73 E-value=2.6e-06 Score=52.28 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=34.9
Q ss_pred ccccccccC-CCCCceeeC-cCCCcccCCCCCCCCC------CCCCCCeeccCCC
Q psy3924 38 VCEGCAQRH-DEGRLILCD-ECDISYHIYCTDPPLD------HIPRGTWKCKWCA 84 (131)
Q Consensus 38 ~C~~C~~~~-~~~~ll~Cd-~C~~~~H~~Cl~p~l~------~~p~~~W~C~~C~ 84 (131)
.|.+|++.. +...+|.|| .|.+.||..|+.-... ..|.+.|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 456777764 467899999 9999999999963221 1366789999874
No 52
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.70 E-value=9.3e-06 Score=47.08 Aligned_cols=28 Identities=29% Similarity=0.813 Sum_probs=23.3
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ .+||++|++|++..+|.+ +|+|+.|.
T Consensus 21 C~-~~~H~~Cl~p~l~~~P~g------~W~C~~C~ 48 (51)
T 1f62_A 21 CN-KAFHLFCLRPALYEVPDG------EWQCPACQ 48 (51)
T ss_dssp TC-CEECHHHHCTTCCSCCSS------CCSCTTTS
T ss_pred CC-hhhCcccCCCCcCCCCCC------cEECcCcc
Confidence 44 699999999998777754 89999985
No 53
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.70 E-value=3e-05 Score=49.02 Aligned_cols=41 Identities=34% Similarity=0.814 Sum_probs=30.2
Q ss_pred CCeeccCCCccccCCC--------------cccccccCCCCCCCccccCCCCcccc
Q psy3924 76 GTWKCKWCAQCLTCGA--------------TGYHIYCTDPPLDHIIFVQDKIRPKR 117 (131)
Q Consensus 76 ~~W~C~~C~~c~~Cg~--------------~~~~~~c~~ppl~~~~~~~~~~~~~~ 117 (131)
..|+|+.| .|..|+. ..||++|++|||.++|.+..=+++.+
T Consensus 20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C 74 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74 (77)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTT
T ss_pred CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCc
Confidence 57999998 6666654 36999999999999995422355554
No 54
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.67 E-value=1.3e-05 Score=49.33 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=32.8
Q ss_pred cccccCCCCCceeeC--cCCCcccCCCCCCCCCC----CCCCCeeccCCCc
Q psy3924 41 GCAQRHDEGRLILCD--ECDISYHIYCTDPPLDH----IPRGTWKCKWCAQ 85 (131)
Q Consensus 41 ~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~ 85 (131)
+|+...+.+.||.|+ .|...||..|+.-.... .....|+|+.|+.
T Consensus 14 ~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 14 ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 577776788999999 59999999999632111 1123699998863
No 55
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=2e-05 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=22.2
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
.+||+.||+|++..+|.+ +|+|+.|.
T Consensus 29 ~~~H~~Cl~ppl~~~p~g------~W~C~~C~ 54 (56)
T 2yql_A 29 RVYHLDCLDPPLKTIPKG------MWICPRCQ 54 (56)
T ss_dssp CEECSSSSSSCCCSCCCS------SCCCHHHH
T ss_pred cceECccCCCCcCCCCCC------ceEChhhh
Confidence 799999999998777654 89999884
No 56
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.57 E-value=1.9e-05 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.7
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
.+||++||+|++..+|.+ +|+|+.|.
T Consensus 32 ~~~H~~Cl~P~l~~~P~g------~W~C~~C~ 57 (66)
T 2lri_C 32 AAFHWRCHFPAGTSRPGT------GLRCRSCS 57 (66)
T ss_dssp CEECHHHHCTTTCCCCSS------SCCCTTTT
T ss_pred CceecccCCCccCcCCCC------CEECcccc
Confidence 789999999998877765 89999984
No 57
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.57 E-value=1.1e-05 Score=51.73 Aligned_cols=47 Identities=21% Similarity=0.579 Sum_probs=35.8
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCC------------CCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPP------------LDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~------------l~~~p~~~W~C~~C~~ 85 (131)
.|.+|.+.. .+.++-|..|.+.||..||.++ +...+...|.|+.|..
T Consensus 17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 466676654 6778899999999999999763 2334567899999963
No 58
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.56 E-value=3.8e-05 Score=46.30 Aligned_cols=26 Identities=31% Similarity=0.752 Sum_probs=22.3
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
.+||++||++++..+|.+ +|+|+.|.
T Consensus 29 ~~fH~~Cl~ppl~~~p~g------~W~C~~C~ 54 (61)
T 1mm2_A 29 SSYHIHCLNPPLPEIPNG------EWLCPRCT 54 (61)
T ss_dssp CCBCSSSSSSCCSSCCSS------CCCCTTTT
T ss_pred HHHcccccCCCcCcCCCC------ccCChhhc
Confidence 589999999998777755 89999994
No 59
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=97.55 E-value=2e-05 Score=47.57 Aligned_cols=28 Identities=36% Similarity=0.876 Sum_probs=23.0
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ .+||++||++++..+|.+ +|+|+.|.
T Consensus 29 C~-~~fH~~Cl~p~l~~~p~g------~W~C~~C~ 56 (61)
T 2l5u_A 29 CP-RAYHMVCLDPDMEKAPEG------KWSCPHCE 56 (61)
T ss_dssp SS-CEEEHHHHCTTCCSCCCS------SCCCTTGG
T ss_pred CC-hhhhhhccCCCCCCCCCC------ceECcccc
Confidence 44 499999999998766654 99999985
No 60
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.54 E-value=3.7e-06 Score=60.28 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=35.1
Q ss_pred ccccccccCC-CCCceeeCcCCCcccCCCCCCCCCC-CCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHD-EGRLILCDECDISYHIYCTDPPLDH-IPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~-~p~~~W~C~~C~~ 85 (131)
+| +|++..+ .+.||.||.|+++||..|+...... ...+.|+|+.|+.
T Consensus 10 ~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 10 YC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred Ee-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 35 6677543 6789999999999999999743221 2356899999974
No 61
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.53 E-value=7.2e-05 Score=48.46 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=26.6
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCccccccc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCA 43 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~C~~C~ 43 (131)
.+||++||+|++..+|.+ +|+|+.|.....-+
T Consensus 45 ~~fH~~Cl~PpL~~~P~g------~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 45 FCFHLDCHLPALQDVPGE------EWSCSLCHVLPDLK 76 (88)
T ss_dssp CEECTTSSSTTCCCCCSS------SCCCCSCCCCCSSC
T ss_pred CceecccCCCCCCCCcCC------CcCCccccCCCccc
Confidence 689999999999888765 99999998765444
No 62
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.52 E-value=2.8e-05 Score=46.61 Aligned_cols=28 Identities=32% Similarity=0.770 Sum_probs=23.2
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ .+||+.|++|++..+|.+ .|+|+.|.
T Consensus 23 C~-~~fH~~Cl~ppl~~~p~g------~W~C~~C~ 50 (60)
T 2puy_A 23 CS-RVYHLDCLDPPLKTIPKG------MWICPRCQ 50 (60)
T ss_dssp SS-CEECGGGSSSCCSSCCCS------CCCCHHHH
T ss_pred CC-cCEECCcCCCCcCCCCCC------ceEChhcc
Confidence 44 799999999998777654 89999884
No 63
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=97.49 E-value=3.5e-05 Score=47.12 Aligned_cols=27 Identities=30% Similarity=0.763 Sum_probs=22.6
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
.+||++||+|++..+|.+ +|+|+.|..
T Consensus 28 ~~fH~~Cl~ppl~~~P~g------~W~C~~C~~ 54 (66)
T 1xwh_A 28 RAFHLACLSPPLREIPSG------TWRCSSCLQ 54 (66)
T ss_dssp CEECTTTSSSCCSSCCSS------CCCCHHHHH
T ss_pred hhhcccccCCCcCcCCCC------CeECccccC
Confidence 599999999998777755 899998853
No 64
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.49 E-value=1e-05 Score=50.78 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=33.9
Q ss_pred cccccCC-CCCceeeCcCCCcccCCCCCCCCCCCCC-CCeeccCCCc
Q psy3924 41 GCAQRHD-EGRLILCDECDISYHIYCTDPPLDHIPR-GTWKCKWCAQ 85 (131)
Q Consensus 41 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~-~~W~C~~C~~ 85 (131)
+|++..+ .+.||.|+.|...||..|+.-.....+. ..|+|+.|..
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 5676644 6799999999999999999744333222 5799999874
No 65
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.00011 Score=46.33 Aligned_cols=31 Identities=39% Similarity=0.806 Sum_probs=21.3
Q ss_pred cccCCCcccccccCCCCCCCccccCCCCcccc
Q psy3924 86 CLTCGATGYHIYCTDPPLDHIIFVQDKIRPKR 117 (131)
Q Consensus 86 c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~ 117 (131)
|+.|. ..||++|++|||.++|.+..=+++.+
T Consensus 44 CD~C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 44 CDECN-VAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CSSSC-CEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred cCCCC-ccccccccCCCccCCCCCCCcCCcCc
Confidence 44443 57999999999999994323345444
No 66
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=5.7e-05 Score=49.19 Aligned_cols=29 Identities=34% Similarity=0.810 Sum_probs=23.8
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
|+ .+||++||+|++..+|.+ +|+|+.|..
T Consensus 37 C~-~~~H~~Cl~Ppl~~~P~g------~W~C~~C~~ 65 (92)
T 2e6r_A 37 CD-DNYHIFCLLPPLPEIPRG------IWRCPKCIL 65 (92)
T ss_dssp TC-CEECSSSSSSCCSSCCSS------CCCCHHHHH
T ss_pred CC-chhccccCCCCcccCCCC------CcCCccCcC
Confidence 44 589999999998877755 899999954
No 67
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.80 E-value=0.0011 Score=49.78 Aligned_cols=32 Identities=34% Similarity=0.767 Sum_probs=19.9
Q ss_pred cccCCCcccccccCCCCCCCccccCCCCccccc
Q psy3924 86 CLTCGATGYHIYCTDPPLDHIIFVQDKIRPKRL 118 (131)
Q Consensus 86 c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~~ 118 (131)
|+.|. ..||++|++|||.++|.+..=+|+.|.
T Consensus 192 CD~C~-~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 192 CDECD-MAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CSSSC-CEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred cCCCC-cceeCccCCCCcccCCCCCCCCCcCCc
Confidence 34443 479999999999999933233466664
No 68
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=96.75 E-value=0.00077 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=23.4
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
.+||..||+|++..+|.+ +|.|+.|..
T Consensus 27 ~~~H~~Cl~p~l~~~p~~------~W~C~~C~~ 53 (207)
T 3u5n_A 27 KVFHLTCHVPTLLSFPSG------DWICTFCRD 53 (207)
T ss_dssp CEECTTTSSSCCSSCCSS------CCCCTTTSC
T ss_pred CccCCccCCCCCCCCCCC------CEEeCceeC
Confidence 799999999998877765 899999864
No 69
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.74 E-value=0.00017 Score=52.62 Aligned_cols=48 Identities=23% Similarity=0.677 Sum_probs=33.1
Q ss_pred ccccccccCCC----CCceeeCcCCCcccCCCCCCCCC------CCCC-CCeeccCCCc
Q psy3924 38 VCEGCAQRHDE----GRLILCDECDISYHIYCTDPPLD------HIPR-GTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~----~~ll~Cd~C~~~~H~~Cl~p~l~------~~p~-~~W~C~~C~~ 85 (131)
+|.+|++.-+. +.||.||.|+..||..|...... ..|+ ..|+|+.|+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 45666665333 35999999999999999973311 1121 3799999985
No 70
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=96.73 E-value=0.00084 Score=48.37 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=23.1
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
.+||..|+.|++..+|.+ .|.|+.|+.
T Consensus 24 ~~~H~~C~~p~l~~~p~~------~W~C~~C~~ 50 (184)
T 3o36_A 24 KVFHLSCHVPTLTNFPSG------EWICTFCRD 50 (184)
T ss_dssp CEECTTTSSSCCSSCCSS------CCCCTTTSC
T ss_pred cccCccccCCCCCCCCCC------CEECccccC
Confidence 799999999998877755 899998864
No 71
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.72 E-value=0.00032 Score=45.20 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=21.8
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
.+||++|++|++...++ .+....|+|+.|..
T Consensus 41 ~~yH~~Cl~Ppl~~~~~--~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 41 NLYHQDCHKPQVTDKEV--NDPRLVWYCARCTR 71 (88)
T ss_dssp CEEETTTSSSCCCHHHH--HCTTCCCCCHHHHH
T ss_pred CeEcCccCCCccccccc--CCCCCCeeCccccc
Confidence 79999999999753100 12345999999864
No 72
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=96.47 E-value=0.0016 Score=40.28 Aligned_cols=27 Identities=22% Similarity=0.680 Sum_probs=20.4
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|.+.+||+.|+.+. ..|. ..|+|+.|.
T Consensus 37 C~~~wfH~~Cvgl~--~~p~------g~w~Cp~C~ 63 (71)
T 1wen_A 37 CSIEWFHFACVGLT--TKPR------GKWFCPRCS 63 (71)
T ss_dssp CSCCCEETTTTTCS--SCCS------SCCCCTTTS
T ss_pred CCCccEecccCCcC--cCCC------CCEECCCCC
Confidence 44579999999965 4443 489999984
No 73
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.46 E-value=0.00079 Score=41.76 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=21.8
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ .+||+.|+.++....+. ..|+|+.|.
T Consensus 39 C~-~wfH~~Cv~~~~~~~~~------~~w~C~~C~ 66 (75)
T 2k16_A 39 CD-DWYHWPCVGIMAAPPEE------MQWFCPKCA 66 (75)
T ss_dssp SS-SEEEHHHHTCSSCCCSS------SCCCCTTTH
T ss_pred CC-cccccccCCCCccCCCC------CCEEChhcc
Confidence 55 79999999998654443 489999985
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.41 E-value=0.0004 Score=43.10 Aligned_cols=26 Identities=31% Similarity=0.814 Sum_probs=20.3
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ ++||++|++++ .+|.+ +|+|+.|.
T Consensus 39 C~-~~~H~~Cl~~~--~vP~g------~W~C~~C~ 64 (71)
T 2ku3_A 39 CN-LAVHQECYGVP--YIPEG------QWLCRHCL 64 (71)
T ss_dssp SC-CEEEHHHHTCS--SCCSS------CCCCHHHH
T ss_pred CC-CccccccCCCC--cCCCC------CcCCccCc
Confidence 44 49999999988 35544 99999884
No 75
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.38 E-value=0.0005 Score=41.58 Aligned_cols=30 Identities=17% Similarity=0.548 Sum_probs=21.2
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
.+||++|++|++...+ +.....|+|+.|..
T Consensus 31 ~~~H~~C~~p~l~~~~---~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 31 QGYHQLCHTPHIDSSV---IDSDEKWLCRQCVF 60 (66)
T ss_dssp CEEETTTSSSCCCHHH---HHSSCCCCCHHHHH
T ss_pred hHHHhhhCCCcccccc---cCCCCCEECCCCcC
Confidence 6899999999864310 11356999998854
No 76
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=96.25 E-value=0.0021 Score=46.77 Aligned_cols=27 Identities=30% Similarity=0.671 Sum_probs=23.1
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
.+||..|+.|++..+|.+ +|.|+.|..
T Consensus 22 ~~~H~~Cl~p~l~~~p~g------~W~C~~C~~ 48 (189)
T 2ro1_A 22 FCFHLDCHLPALQDVPGE------EWSCSLCHV 48 (189)
T ss_dssp CBCCSTTSTTCCSSCCCT------TCCTTTTSC
T ss_pred chhccccCCCCcccCCCC------CCCCcCccC
Confidence 689999999998877765 899999954
No 77
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=96.09 E-value=0.0015 Score=39.07 Aligned_cols=27 Identities=22% Similarity=0.680 Sum_probs=20.1
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|.+.+||+.|+.+. ..|. ..|+|+.|.
T Consensus 31 C~~~wfH~~Cvgl~--~~p~------g~w~C~~C~ 57 (60)
T 2vnf_A 31 CSIEWFHFACVGLT--TKPR------GKWFCPRCS 57 (60)
T ss_dssp CSSCEEETGGGTCS--SCCS------SCCCCHHHH
T ss_pred CCCceEehhcCCCC--cCCC------CCEECcCcc
Confidence 33579999999955 4443 489999884
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.03 E-value=0.0037 Score=40.56 Aligned_cols=27 Identities=22% Similarity=0.680 Sum_probs=20.2
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|.+.+||+.|+.+. ..|. ..|+|+.|.
T Consensus 57 C~~~WfH~~CVgl~--~~p~------g~W~Cp~C~ 83 (91)
T 1weu_A 57 CSIEWFHFACVGLT--TKPR------GKWFCPRCS 83 (91)
T ss_dssp CSCCCCCSTTTTCS--SCCC------SSCCCTTTC
T ss_pred CCCCCEecccCCcC--cCCC------CCEECcCcc
Confidence 44579999999966 3343 489999884
No 79
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=96.00 E-value=0.0017 Score=38.70 Aligned_cols=27 Identities=26% Similarity=0.707 Sum_probs=20.2
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|.+.+||+.|+.+. ..|. ..|+|+.|.
T Consensus 30 C~~~wfH~~Cvgl~--~~p~------~~w~Cp~C~ 56 (59)
T 3c6w_A 30 CPIEWFHFACVDLT--TKPK------GKWFCPRCV 56 (59)
T ss_dssp CSSCEEETGGGTCS--SCCS------SCCCCHHHH
T ss_pred CCCCCEecccCCcc--cCCC------CCEECcCcc
Confidence 44579999999966 3443 489999884
No 80
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=95.98 E-value=0.00093 Score=43.01 Aligned_cols=26 Identities=31% Similarity=0.850 Sum_probs=20.3
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ .+||++|+.+++ +|.+ +|+|+.|.
T Consensus 48 C~-~~fH~~Cl~p~~--vP~g------~W~C~~C~ 73 (88)
T 2l43_A 48 CN-LAVHQECYGVPY--IPEG------QWLCRHCL 73 (88)
T ss_dssp SC-CCCCHHHHTCSS--CCSS------CCCCHHHH
T ss_pred CC-chhhcccCCCCc--cCCC------ceECcccc
Confidence 44 489999999983 5554 99999884
No 81
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.62 E-value=0.0031 Score=42.06 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=23.7
Q ss_pred cCcccccccccCCCCCceeeCcCCCcccCCCCCCCC
Q psy3924 35 DCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPL 70 (131)
Q Consensus 35 ~C~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l 70 (131)
.|.+|.+|++. + |+.|+..||++++.++.
T Consensus 6 rC~~C~~C~~~---~----C~~C~~c~~~~~~~~~~ 34 (117)
T 4bbq_A 6 RCRKCKACVQG---E----CGVCHYCRDMKKFGGPG 34 (117)
T ss_dssp CCSCSHHHHSC---C----CSCSHHHHHSGGGTSCC
T ss_pred cCCcCcCcCCc---C----CCCCCCCcCCcccCCCC
Confidence 57788888873 2 99999999999998664
No 82
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=95.49 E-value=0.0036 Score=37.64 Aligned_cols=27 Identities=22% Similarity=0.632 Sum_probs=20.1
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|.+.+||+.|+.+. ..|. ..|+|+.|.
T Consensus 32 C~~~WfH~~Cvgl~--~~p~------~~w~Cp~C~ 58 (62)
T 2g6q_A 32 CPIEWFHFSCVSLT--YKPK------GKWYCPKCR 58 (62)
T ss_dssp CSSCEEETGGGTCS--SCCS------SCCCCHHHH
T ss_pred CCcccEecccCCcC--cCCC------CCEECcCcc
Confidence 33489999999976 3343 489999884
No 83
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.32 E-value=0.0011 Score=54.84 Aligned_cols=45 Identities=29% Similarity=0.496 Sum_probs=33.9
Q ss_pred cccccCC-CCCceeeCcCCCcccCCCCCCCCCCCC-CCCeeccCCCc
Q psy3924 41 GCAQRHD-EGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWCAQ 85 (131)
Q Consensus 41 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~ 85 (131)
+|++..+ .+.||.||.|+..||..|++-...... ...|+|+.|..
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 7777644 789999999999999999973322211 24799999973
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=95.08 E-value=0.0075 Score=38.99 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=20.0
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCcc-Cc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLD-CT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~-C~ 37 (131)
|...+||+.|+.+. ..|. ..|+|+. |.
T Consensus 47 C~~eWfH~~CVgl~--~~p~------~~W~Cp~cC~ 74 (90)
T 2jmi_A 47 CPFEWFHYGCVGLK--QAPK------GKWYCSKDCK 74 (90)
T ss_dssp CSCSCEETTTSSCS--SCTT------SCCCSSHHHH
T ss_pred CccccCcCccCCCC--cCCC------CCccCChhhc
Confidence 33479999999866 3343 4899999 75
No 85
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=94.93 E-value=0.0011 Score=54.34 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=33.1
Q ss_pred cccccCC-CCCceeeCcCCCcccCCCCCCCCCCCC-CCCeeccCCC
Q psy3924 41 GCAQRHD-EGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWCA 84 (131)
Q Consensus 41 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~ 84 (131)
+|++..+ ++.||.||.|+..||..|++-...... ...|+|+.|.
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~ 54 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE 54 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCc
Confidence 6777644 789999999999999999973322112 2579999996
No 86
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.91 E-value=0.0083 Score=50.00 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=29.7
Q ss_pred CCCCceeeCcCCCcccCCCCCCCCCCC-CCCCeeccCCCc
Q psy3924 47 DEGRLILCDECDISYHIYCTDPPLDHI-PRGTWKCKWCAQ 85 (131)
Q Consensus 47 ~~~~ll~Cd~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~ 85 (131)
....|+.||.|+..||..|++-..... ....|+|+.|..
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 356889999999999999997332222 235799999974
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.80 E-value=0.017 Score=37.64 Aligned_cols=25 Identities=16% Similarity=0.483 Sum_probs=20.0
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
.+||..|+.+++..+| ..|+|+.|+
T Consensus 50 ~w~H~~C~~~~~~~~p-------~~w~C~~C~ 74 (98)
T 2lv9_A 50 VWQHIDCMGIDRQHIP-------DTYLCERCQ 74 (98)
T ss_dssp BEEETTTTTCCTTSCC-------SSBCCTTTS
T ss_pred CcCcCcCCCCCccCCC-------CCEECCCCc
Confidence 6899999999865444 379999995
No 88
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.56 E-value=0.0044 Score=38.16 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=19.6
Q ss_pred ceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 5 VIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 5 ~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
...||+.|+.+.. .| ...|+|+.|.
T Consensus 29 ~~WfH~~Cvgl~~--~p------~~~w~Cp~C~ 53 (70)
T 1x4i_A 29 IEWFHYGCVGLTE--AP------KGKWYCPQCT 53 (70)
T ss_dssp CCCEEHHHHTCSS--CC------SSCCCCHHHH
T ss_pred ccCCcccccccCc--CC------CCCEECCCCC
Confidence 5899999999763 33 3489999885
No 89
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=93.30 E-value=0.034 Score=33.71 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=21.1
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ ..||..|+.+.... .......+.|+|+.|+
T Consensus 32 C~-~W~H~~Cvgi~~~~--~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 32 CQ-VWQHLNCVLIPDKP--GESAEVPPVFYCELCR 63 (68)
T ss_dssp TC-EEEETTTSCCCSST--TSCCCCCSSCCCHHHH
T ss_pred CC-CeEchhhCCCCccc--ccccCCCCcEECcCcc
Confidence 66 59999999876332 1111234589998885
No 90
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=91.93 E-value=0.13 Score=37.05 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=29.1
Q ss_pred ccccCC-CCCceeeCcCCCcccCCCCCCCCCC-CC---CCCeeccCCC
Q psy3924 42 CAQRHD-EGRLILCDECDISYHIYCTDPPLDH-IP---RGTWKCKWCA 84 (131)
Q Consensus 42 C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~-~p---~~~W~C~~C~ 84 (131)
|++.++ ...+|.|.+|.+.||..|+.....+ +| .....|..|.
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~ 57 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCH 57 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTS
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccC
Confidence 666544 5689999999999999999854433 22 1235566665
No 91
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.19 E-value=0.04 Score=36.64 Aligned_cols=36 Identities=22% Similarity=0.638 Sum_probs=27.0
Q ss_pred CceeeCcCCCcccCCCCCCCC------CCCC-CCCeeccCCCc
Q psy3924 50 RLILCDECDISYHIYCTDPPL------DHIP-RGTWKCKWCAQ 85 (131)
Q Consensus 50 ~ll~Cd~C~~~~H~~Cl~p~l------~~~p-~~~W~C~~C~~ 85 (131)
.|+.||.|+.+||..|..-.- ...| ...|.|+.|..
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 478999999999999986321 2334 34799999974
No 92
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.45 E-value=0.11 Score=29.73 Aligned_cols=28 Identities=25% Similarity=0.676 Sum_probs=19.5
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ ..||..|+.+... .. ....|.|+.|+
T Consensus 25 C~-~WfH~~Cvgl~~~-----~~-~~~~~~C~~C~ 52 (52)
T 2kgg_A 25 CD-EWFHQVCVGVSPE-----MA-ENEDYICINCA 52 (52)
T ss_dssp TC-CEEETTTTTCCHH-----HH-HHSCCCCSCC-
T ss_pred CC-ccCcccccCCCcc-----cc-CCCCEECCCCC
Confidence 44 7899999997732 11 13689999884
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.78 E-value=0.13 Score=30.47 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=19.3
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
..||..|+.+....+ .....|.|+.|.
T Consensus 30 ~WfH~~Cvgl~~~~~-----~~~~~~~C~~C~ 56 (64)
T 1we9_A 30 MWFHGKCVKITPARA-----EHIKQYKCPSCS 56 (64)
T ss_dssp CEEETTTTTCCTTGG-----GGCSSCCCHHHH
T ss_pred CCCCccccCcChhHh-----cCCCcEECCCCc
Confidence 789999999874322 123589998884
No 94
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.52 E-value=0.13 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.511 Sum_probs=19.3
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
..||..|+.+....++ +.|.|+.|.
T Consensus 41 ~WfH~~Cvgi~~~~~~-------~~~~C~~C~ 65 (68)
T 3o70_A 41 TWIHLSCAKIRKSNVP-------EVFVCQKCR 65 (68)
T ss_dssp CEEETTTTTCCTTSCC-------SSCCCHHHH
T ss_pred ccccccccCcCcccCC-------CcEECCCCC
Confidence 7999999998854332 489998884
No 95
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=88.98 E-value=0.11 Score=29.65 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=19.0
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
..||..|+.+....+ ...|.|+.|+
T Consensus 26 ~W~H~~Cvgi~~~~~-------~~~~~C~~C~ 50 (52)
T 3o7a_A 26 TWIHLSCAKIRKSNV-------PEVFVCQKCR 50 (52)
T ss_dssp CEEETTTTTCCGGGC-------CSSCCCHHHH
T ss_pred ccccccccCCCcccC-------CCcEECcCCC
Confidence 789999999874322 3589998884
No 96
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=88.50 E-value=0.059 Score=33.19 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=20.9
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
|+ ..||..|+.+....++ ....|.|+.|..
T Consensus 31 C~-~WfH~~Cvg~~~~~~~-----~~~~~~C~~C~~ 60 (75)
T 3kqi_A 31 CK-DWFHGSCVGVEEEEAP-----DIDIYHCPNCEK 60 (75)
T ss_dssp TC-CEEEHHHHTCCTTTGG-----GBSSCCCHHHHH
T ss_pred CC-CCEecccccccccccC-----CCCEEECCCCcc
Confidence 44 7999999998744322 234899988853
No 97
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=88.20 E-value=0.2 Score=31.79 Aligned_cols=35 Identities=29% Similarity=0.817 Sum_probs=26.0
Q ss_pred CCCccCccCcccccccccCCCCCceeeC--cCCCcccCCCCC
Q psy3924 28 SKGWRCLDCTVCEGCAQRHDEGRLILCD--ECDISYHIYCTD 67 (131)
Q Consensus 28 ~~~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~ 67 (131)
+..|. ..|.+|++.+ .|..|.|. .|.++||+.|..
T Consensus 13 ~~R~~----l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 13 PARWK----LTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCC----CCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHH
T ss_pred hHHhc----CCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHH
Confidence 44676 5677776531 47889997 499999999974
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.09 E-value=0.1 Score=32.37 Aligned_cols=29 Identities=17% Similarity=0.504 Sum_probs=19.7
Q ss_pred ccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 3 CDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 3 ~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
|+ ..||..|+.+... .......|.|+.|.
T Consensus 33 C~-~WfH~~Cvgl~~~-----~~~~~~~~~C~~C~ 61 (79)
T 1wep_A 33 CQ-DWFHGSCVGIEEE-----NAVDIDIYHCPDCE 61 (79)
T ss_dssp TC-CEEEHHHHTCCHH-----HHTTCSBBCCTTTT
T ss_pred CC-CcEEeeecCcccc-----cccCCCeEECCCcc
Confidence 44 7899999987632 11223589988884
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.33 E-value=0.24 Score=30.04 Aligned_cols=26 Identities=19% Similarity=0.476 Sum_probs=18.9
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
..||..|+.+..... ....|+|+.|.
T Consensus 39 ~W~H~~Cvg~~~~~~------~~~~~~C~~C~ 64 (72)
T 1wee_A 39 VWHHTRCIGINNADA------LPSKFLCFRCI 64 (72)
T ss_dssp EEEETTTTTCCTTSC------CCSCCCCHHHH
T ss_pred CccCCeeeccCcccc------CCCcEECCCcc
Confidence 789999999874211 13589998884
No 100
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.05 E-value=0.12 Score=31.97 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=21.4
Q ss_pred CccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 2 NCDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 2 ~~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
.|.+ .||..|+.+.....- +.......|+|+.|+
T Consensus 37 ~C~~-W~H~~CVgi~~~~~~-~~~~~~~~~~C~~C~ 70 (78)
T 1wew_A 37 RCHV-WQHVGCVILPDKPMD-GNPPLPESFYCEICR 70 (78)
T ss_dssp TTCC-EEEHHHHSCCCTTTC-SCSCSCSSCCCHHHH
T ss_pred cCCc-cccCEEEcccccccc-ccccCCCCEECCCCC
Confidence 4666 999999998743210 000123589998885
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.76 E-value=0.049 Score=37.97 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=21.5
Q ss_pred eeeccccCCCCCCCCCcccc-ccCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKV-ILSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~-~~~~~W~C~~C~ 37 (131)
.+||..||++++......++ ....+|.|+.|.
T Consensus 83 r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 83 NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 78999999988642111111 246699999985
No 102
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=83.22 E-value=0.056 Score=35.60 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=20.5
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
..||..|+.+....+..........|.|+.|..
T Consensus 28 ~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 28 KWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 899999999874211110001235899998854
No 103
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.99 E-value=0.29 Score=30.15 Aligned_cols=44 Identities=20% Similarity=0.523 Sum_probs=29.5
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
..|.+|...... -+.|..|...||..|+..-+.... .=.||.|+
T Consensus 16 ~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr 59 (74)
T 2ct0_A 16 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCN 59 (74)
T ss_dssp CBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCS--SCCCTTTC
T ss_pred CcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcC--CCCCCCCc
Confidence 357777765433 357889999999999975554332 13577766
No 104
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.83 E-value=0.65 Score=25.77 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=26.0
Q ss_pred cccccccCC-CCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 39 CEGCAQRHD-EGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|.+|...-. ++..+.-..|+..||..|+..-+.. ...||.|+.
T Consensus 8 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~ 51 (55)
T 1iym_A 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRL 51 (55)
T ss_dssp CTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCC
T ss_pred CccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCC
Confidence 455554332 2334444469999999999765543 235777763
No 105
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.57 E-value=0.31 Score=34.26 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=19.6
Q ss_pred eeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
..||..|+.+... .......|.|+.|+.
T Consensus 31 ~WfH~~Cv~~~~~-----~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 31 NWYHGRCVGILQS-----EAELIDEYVCPQCQS 58 (174)
T ss_dssp CEEEHHHHTCCHH-----HHTTCSSCCCHHHHH
T ss_pred chhChhhcCCchh-----hccCccCeecCCCcc
Confidence 7899999986521 122356899998853
No 106
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.15 E-value=1.2 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=25.1
Q ss_pred cccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|.+|...-.....+.--.|+..||..|+...+... -.||.|+.
T Consensus 18 C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~ 60 (78)
T 2ect_A 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRK 60 (78)
T ss_dssp CTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCC
T ss_pred CeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCC
Confidence 44554433333333334699999999997544322 36777764
No 107
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=73.59 E-value=4.1 Score=22.49 Aligned_cols=12 Identities=25% Similarity=0.900 Sum_probs=9.3
Q ss_pred ccCCCccCc--cCc
Q psy3924 26 ILSKGWRCL--DCT 37 (131)
Q Consensus 26 ~~~~~W~C~--~C~ 37 (131)
.+..+|.|+ .|.
T Consensus 10 ~~~GDW~C~~~~C~ 23 (45)
T 1n0z_A 10 VSDGDWICPDKKCG 23 (45)
T ss_dssp SCSSSCBCSSTTTC
T ss_pred CCCCCcCCCCCCCC
Confidence 356799999 676
No 108
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=73.43 E-value=1.2 Score=37.21 Aligned_cols=31 Identities=19% Similarity=0.525 Sum_probs=22.2
Q ss_pred CccceeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 2 NCDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 2 ~~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
+|+ ..||..|+.+...... .-..|.||.|..
T Consensus 63 ~C~-~WfH~~CVgi~~~~a~-----~~~~y~Cp~C~~ 93 (528)
T 3pur_A 63 SCQ-TWYHFLCSGLEQFEYY-----LYEKFFCPKCVP 93 (528)
T ss_dssp TTC-CEEEGGGTTCCGGGTT-----TEEECCCTTTHH
T ss_pred CCC-cCCCCcCCCCChhHhc-----CCCeEECcCCcC
Confidence 355 8999999998854322 235899999964
No 109
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.27 E-value=0.72 Score=28.23 Aligned_cols=43 Identities=23% Similarity=0.645 Sum_probs=26.2
Q ss_pred cccccccCCCCC-ceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 39 CEGCAQRHDEGR-LILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~~~~~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|.+|......+. .+.-..|+..||..|+..-+.... .||-|+.
T Consensus 29 C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 72 (81)
T 2ecl_A 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQ 72 (81)
T ss_dssp CTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC----BCTTTCC
T ss_pred CcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC----CCCCcCC
Confidence 445544322333 333447999999999986555432 6777774
No 110
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=72.73 E-value=2.3 Score=21.75 Aligned_cols=10 Identities=30% Similarity=0.963 Sum_probs=8.3
Q ss_pred CCCeeccCCC
Q psy3924 75 RGTWKCKWCA 84 (131)
Q Consensus 75 ~~~W~C~~C~ 84 (131)
.|+|.|+.|.
T Consensus 3 ~gDW~C~~C~ 12 (32)
T 2lk0_A 3 FEDWLCNKCC 12 (32)
T ss_dssp CSEEECTTTC
T ss_pred CCCCCcCcCc
Confidence 4799999886
No 111
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=70.52 E-value=3.5 Score=21.16 Aligned_cols=10 Identities=30% Similarity=1.335 Sum_probs=8.1
Q ss_pred CCCccCccCc
Q psy3924 28 SKGWRCLDCT 37 (131)
Q Consensus 28 ~~~W~C~~C~ 37 (131)
..+|.|+.|.
T Consensus 4 ~gDW~C~~C~ 13 (33)
T 2k1p_A 4 ANDWQCKTCS 13 (33)
T ss_dssp SSSCBCSSSC
T ss_pred CCCcccCCCC
Confidence 4599999886
No 112
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=69.34 E-value=0.35 Score=28.32 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=25.4
Q ss_pred cccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|.+|...-..+..+....|+..||..|+...+... ..||.|+.
T Consensus 17 C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~ 59 (69)
T 2kiz_A 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRV 59 (69)
T ss_dssp BTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCS
T ss_pred CeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCc
Confidence 44554433333345556799999999996443321 24777764
No 113
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.32 E-value=0.25 Score=29.57 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=27.6
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|.+|...-..+..+..-.|+..||..|+..-+.. ...||.|+.
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 68 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRA 68 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCC
Confidence 46666654434445555569999999999754322 125777764
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.41 E-value=0.23 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=21.1
Q ss_pred eeeccccCCCCCCCCCccccc-cCCCccCccCc
Q psy3924 6 IAYGSVCRDVKLHDLPISKVI-LSKGWRCLDCT 37 (131)
Q Consensus 6 ~~~H~~Cl~~~~~~~~~~~~~-~~~~W~C~~C~ 37 (131)
.+||..|+.+.+......+++ ...+|+|..|.
T Consensus 77 r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 77 NAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 789999999775321111222 46799998883
No 115
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=67.40 E-value=0.63 Score=25.76 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=26.2
Q ss_pred cccccccC-CCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 39 CEGCAQRH-DEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|.+|...- +++..+.-..|+..||..|+...+... ..||.|+.
T Consensus 8 C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~ 51 (55)
T 2ecm_A 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSG 51 (55)
T ss_dssp CTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCC
T ss_pred CcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCC
Confidence 45555432 234456677899999999996433221 35776653
No 116
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=67.10 E-value=0.66 Score=32.82 Aligned_cols=45 Identities=22% Similarity=0.730 Sum_probs=33.3
Q ss_pred ccccccccCCCCCceeeC--cCCCcccCCCCCCCCCC------CCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCD--ECDISYHIYCTDPPLDH------IPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~------~p~~~W~C~~C~~ 85 (131)
+|.+|++ ++.++.|+ .|.+.|=..|+.--+.. ....+|.|--|.-
T Consensus 81 yC~wC~~---Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 81 YCTICCG---GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SCTTTSC---CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred eeeEecC---CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 5778875 88999999 89999998888622211 3456899887763
No 117
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=63.96 E-value=0.57 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=26.8
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|.+|...-..+..+.--.|+..||..|+...+... -.||.|+.
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~ 85 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRC 85 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCC
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCc
Confidence 355665443334444445699999999997544322 26777764
No 118
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.89 E-value=6.2 Score=24.87 Aligned_cols=35 Identities=34% Similarity=0.755 Sum_probs=26.2
Q ss_pred CCCceeeCcCCC-cccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 48 EGRLILCDECDI-SYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 48 ~~~ll~Cd~C~~-~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.=.||+|..|+. +-|..|.. +. .....|.|..|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~--l~-~~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSS--LR-PNSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGT--CC-TTCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhC--Cc-CCCCCEECCcCcc
Confidence 357899999985 58999996 32 2345799999873
No 119
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=61.30 E-value=0.11 Score=34.28 Aligned_cols=31 Identities=26% Similarity=0.571 Sum_probs=18.2
Q ss_pred ceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 51 LILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 51 ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.+....|+..||..|+...+... ..||.|+.
T Consensus 91 ~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~ 121 (133)
T 4ap4_A 91 LIVSTECGHVFCSQCLRDSLKNA----NTCPTCRK 121 (133)
T ss_dssp CEEEETTSBEEEHHHHHHHHHHC----SBCTTTCC
T ss_pred ceEeCCCCChhhHHHHHHHHHcC----CCCCCCCC
Confidence 34455677778888876443321 25666653
No 120
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=60.09 E-value=7.8 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=9.2
Q ss_pred CCCCeeccCCCc
Q psy3924 74 PRGTWKCKWCAQ 85 (131)
Q Consensus 74 p~~~W~C~~C~~ 85 (131)
+...|.|+.|.+
T Consensus 5 ~~~~W~C~~CT~ 16 (34)
T 3a9j_C 5 MGAQWNCTACTF 16 (34)
T ss_dssp CCCCEECTTTCC
T ss_pred CCCcCCCCCCcc
Confidence 345799999984
No 121
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.83 E-value=22 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.971 Sum_probs=15.2
Q ss_pred CCCCCeeccCCCc--------cccCCCc
Q psy3924 73 IPRGTWKCKWCAQ--------CLTCGAT 92 (131)
Q Consensus 73 ~p~~~W~C~~C~~--------c~~Cg~~ 92 (131)
.+.+.|.|+.|.+ |+.|+..
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~p 34 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVR 34 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCc
Confidence 3556899999974 8888753
No 122
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.97 E-value=0.59 Score=27.68 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=24.8
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|.+|...-.....+.--.|+..||..|+...+... -.||.|+.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~ 60 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNM 60 (74)
T ss_dssp BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCC
T ss_pred CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCc
Confidence 355555443333333333699999999996443321 25777764
No 123
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.71 E-value=16 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=12.8
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCT 66 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl 66 (131)
.|..|++.....++| ..-++.||..|.
T Consensus 17 ~C~~C~~~I~~~~~v--~a~~~~~H~~CF 43 (91)
T 2d8y_A 17 TCVECQKTVYPMERL--LANQQVFHISCF 43 (91)
T ss_dssp BCTTTCCBCCTTSEE--ECSSSEEETTTC
T ss_pred cCccCCCccCCceeE--EECCCEECCCCC
Confidence 345555543333333 244556665554
No 124
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=56.62 E-value=4.6 Score=20.05 Aligned_cols=15 Identities=40% Similarity=1.378 Sum_probs=12.0
Q ss_pred CccCccCcccccccc
Q psy3924 30 GWRCLDCTVCEGCAQ 44 (131)
Q Consensus 30 ~W~C~~C~~C~~C~~ 44 (131)
+|.|-.|-+|..|..
T Consensus 1 dwtcwsclvcaacsv 15 (31)
T 2lbz_A 1 DWTCWSCLVCAACSV 15 (31)
T ss_dssp CCCTTGGGGGGGCCS
T ss_pred CccHHHHHHHHHhHH
Confidence 588888888888864
No 125
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=55.94 E-value=2.8 Score=31.12 Aligned_cols=44 Identities=20% Similarity=0.525 Sum_probs=29.0
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
..|.+|.+.--. -..|..|+..||..|+.--+... +.-.||.|.
T Consensus 181 ~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~ 224 (238)
T 3nw0_A 181 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCN 224 (238)
T ss_dssp CBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC--SSCBCTTTC
T ss_pred CcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC--CCCCCCCCC
Confidence 357888775433 37899999999999996443332 233576554
No 126
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=53.83 E-value=8.2 Score=21.59 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=23.7
Q ss_pred cccccccccCCCCCceeeCcCCCcccCCCCC
Q psy3924 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 37 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
.+|..|++.-..| +.|..|.-..|..|..
T Consensus 15 t~C~~C~k~i~~G--~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMIFG--VKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSCCE--EEETTTTEEESSSCTT
T ss_pred cCccccCceeECc--CCCCCCCCccchhhcC
Confidence 6788888765544 7899999999999985
No 127
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=52.74 E-value=11 Score=18.67 Aligned_cols=10 Identities=30% Similarity=1.179 Sum_probs=8.1
Q ss_pred CCeeccCCCc
Q psy3924 76 GTWKCKWCAQ 85 (131)
Q Consensus 76 ~~W~C~~C~~ 85 (131)
..|.|+.|.+
T Consensus 5 ~~W~C~~CTf 14 (31)
T 1nj3_A 5 AMWACQHCTF 14 (31)
T ss_dssp CCEECSSSCC
T ss_pred ccccCCcccc
Confidence 4799999984
No 128
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=52.49 E-value=1.2 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=22.4
Q ss_pred ceeeCcCCCcccCCCCCCCCCCCC-CCCeeccCCCc
Q psy3924 51 LILCDECDISYHIYCTDPPLDHIP-RGTWKCKWCAQ 85 (131)
Q Consensus 51 ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~ 85 (131)
.+.-..|+..||..|+...+.... ...-.||.|+.
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 344567999999999975442111 23446888873
No 129
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=52.26 E-value=8.6 Score=21.10 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=21.2
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
+|..|++.-. +-+.|..|....|..|..
T Consensus 16 ~C~~C~~~l~--qG~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 16 FCDICQKFLL--NGFRCQTCGYKFHEHCST 43 (52)
T ss_dssp ECTTSSSEEC--SEEECTTTTCCBCSTTSS
T ss_pred CCCCcccccc--cCCEeCCCCCeEChhHHh
Confidence 4666665433 568999999999999986
No 130
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=47.82 E-value=9.3 Score=21.64 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=8.6
Q ss_pred CCCccCccCcc
Q psy3924 28 SKGWRCLDCTV 38 (131)
Q Consensus 28 ~~~W~C~~C~~ 38 (131)
.++|.||.|..
T Consensus 34 P~dw~CP~Cg~ 44 (52)
T 1e8j_A 34 PDDWACPVCGA 44 (52)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCcCCCCCC
Confidence 56899998854
No 131
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=47.46 E-value=10 Score=22.11 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=20.0
Q ss_pred cCCCcccCCCCCCCCCCCC---CCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIP---RGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p---~~~W~C~~C~~ 85 (131)
.|+..|+..|+...+.... .+.-.||.|+.
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCC
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCC
Confidence 6888899999976554321 22456887774
No 132
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.69 E-value=6.7 Score=22.54 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=8.7
Q ss_pred CCCccCccCcc
Q psy3924 28 SKGWRCLDCTV 38 (131)
Q Consensus 28 ~~~W~C~~C~~ 38 (131)
.++|.||.|.+
T Consensus 34 P~dw~CP~Cg~ 44 (54)
T 4rxn_A 34 PDDWVCPLCGV 44 (54)
T ss_dssp CTTCBCTTTCC
T ss_pred CCCCcCcCCCC
Confidence 56899999864
No 133
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.71 E-value=20 Score=20.89 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=4.1
Q ss_pred CCcccCCCC
Q psy3924 58 DISYHIYCT 66 (131)
Q Consensus 58 ~~~~H~~Cl 66 (131)
++.||..|.
T Consensus 29 ~~~~H~~CF 37 (76)
T 2cu8_A 29 GKDWHKFCL 37 (76)
T ss_dssp TEEEETTTC
T ss_pred CeEeeCCCC
Confidence 444554443
No 134
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.40 E-value=2.5 Score=34.72 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=21.3
Q ss_pred CccceeeccccCCCCCCCCCccccccCCCccCccCcc
Q psy3924 2 NCDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCTV 38 (131)
Q Consensus 2 ~~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 38 (131)
+|+ ..||..|+.+..... .....|.|+.|..
T Consensus 57 ~C~-~WfH~~Cvgl~~~~~-----~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 57 ICK-DWFHGSCVGVEEHHA-----VDIDLYHCPNCAV 87 (488)
T ss_dssp TTC-CEEEHHHHTCCGGGG-----GGEEEBCCHHHHH
T ss_pred CCC-CceeeeecCcCcccc-----cCCCEEECCCCcC
Confidence 355 899999998774322 1234799998864
No 135
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=45.39 E-value=1.5 Score=35.11 Aligned_cols=46 Identities=24% Similarity=0.712 Sum_probs=33.9
Q ss_pred ccccccccCCCCCceeeC--cCCCcccCCCCCCCCCC------CCCCCeeccCCCcc
Q psy3924 38 VCEGCAQRHDEGRLILCD--ECDISYHIYCTDPPLDH------IPRGTWKCKWCAQC 86 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~------~p~~~W~C~~C~~c 86 (131)
.|..|++ ++.++.|+ .|.+.|=..|+.--+.. ....+|.|--|.--
T Consensus 95 yCr~C~~---Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 95 YCSICCS---GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SCTTTCC---CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cceEcCC---CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4777775 88999999 99999988888632211 22358999988743
No 136
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=44.85 E-value=16 Score=18.74 Aligned_cols=12 Identities=42% Similarity=1.091 Sum_probs=8.5
Q ss_pred CCCCeeccCCCc
Q psy3924 74 PRGTWKCKWCAQ 85 (131)
Q Consensus 74 p~~~W~C~~C~~ 85 (131)
..+.|-|+.|.+
T Consensus 4 ~~g~W~C~~C~~ 15 (33)
T 3gj3_B 4 GSGTWDCDTCLV 15 (33)
T ss_dssp --CCEECTTTCC
T ss_pred CCCceeCCcccC
Confidence 357899999973
No 137
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.00 E-value=11 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=16.3
Q ss_pred CCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 58 DISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 58 ~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
...||..|++.-+... +...|+-|+.
T Consensus 41 ~h~fH~~Cl~~Wl~~~--~~~~CplCr~ 66 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS--DTRCCELCKY 66 (80)
T ss_dssp SCCEETTHHHHHHHHH--CCSBCSSSCC
T ss_pred CCeeCHHHHHHHHhhC--CCCCCCCCCC
Confidence 3899999997544321 2245776663
No 138
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=41.13 E-value=5.7 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=0.0
Q ss_pred CcCCCcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 55 DECDISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 55 d~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
..|+..||..|+.+-+... -.||-|+
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr 107 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----QVCPLDN 107 (117)
T ss_dssp ------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----CcCCCCC
Confidence 4788899999998665542 2577665
No 139
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=41.00 E-value=28 Score=20.04 Aligned_cols=30 Identities=27% Similarity=0.633 Sum_probs=22.3
Q ss_pred ccccccccCC--CCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHD--EGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
+|..|+..-. ..+-+.|..|....|..|..
T Consensus 25 ~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 56 (65)
T 2enz_A 25 FCEHCGTLLWGLARQGLKCDACGMNVHHRCQT 56 (65)
T ss_dssp BCSSSCCBCCCSSSCSEEESSSCCEECTTTTT
T ss_pred CchhcChhheecCCcccccCCCCCccCHhHHh
Confidence 4666665432 35678999999999999985
No 140
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=40.80 E-value=11 Score=29.94 Aligned_cols=33 Identities=27% Similarity=0.657 Sum_probs=21.3
Q ss_pred ccccccccCCC-C--CceeeC--cCCCcccCCCCCCCC
Q psy3924 38 VCEGCAQRHDE-G--RLILCD--ECDISYHIYCTDPPL 70 (131)
Q Consensus 38 ~C~~C~~~~~~-~--~ll~Cd--~C~~~~H~~Cl~p~l 70 (131)
.|.+|-..... + ....|+ .|+..||..|+...+
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHH
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHH
Confidence 34555443222 2 335788 999999999996543
No 141
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=40.42 E-value=34 Score=19.32 Aligned_cols=18 Identities=28% Similarity=0.822 Sum_probs=13.5
Q ss_pred CCCeeccCCCc--------cccCCCc
Q psy3924 75 RGTWKCKWCAQ--------CLTCGAT 92 (131)
Q Consensus 75 ~~~W~C~~C~~--------c~~Cg~~ 92 (131)
...|.|+.|.+ |+.|+..
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~p 33 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRA 33 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCC
T ss_pred CCCccCCCcccccCCCCCeeCCCCCc
Confidence 34799999984 7888753
No 142
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=38.97 E-value=2.6 Score=34.35 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=20.3
Q ss_pred CccceeeccccCCCCCCCCCccccccCCCccCccCc
Q psy3924 2 NCDVIAYGSVCRDVKLHDLPISKVILSKGWRCLDCT 37 (131)
Q Consensus 2 ~~~~~~~H~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 37 (131)
+|+ ..||..|+.+..... .....|.|+.|.
T Consensus 25 ~C~-~WfH~~CVgi~~~~~-----~~~~~y~C~~C~ 54 (447)
T 3kv4_A 25 MCQ-DWFHGSCVGVEEEKA-----ADIDLYHCPNCE 54 (447)
T ss_dssp TTC-CEEEHHHHTCCHHHH-----TTEEECCCHHHH
T ss_pred CCC-cccccccCCcCcccc-----cCCCEEECCCCc
Confidence 355 799999998773211 122589999885
No 143
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=38.95 E-value=10 Score=21.43 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.7
Q ss_pred CCCccCccCcc
Q psy3924 28 SKGWRCLDCTV 38 (131)
Q Consensus 28 ~~~W~C~~C~~ 38 (131)
.++|.||.|..
T Consensus 33 P~dw~CP~Cg~ 43 (52)
T 1yk4_A 33 PDDWVCPLCGA 43 (52)
T ss_dssp CTTCBCTTTCC
T ss_pred CCCCcCCCCCC
Confidence 56899998854
No 144
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.77 E-value=52 Score=18.96 Aligned_cols=10 Identities=50% Similarity=1.318 Sum_probs=5.3
Q ss_pred cCCCccccCC
Q psy3924 81 KWCAQCLTCG 90 (131)
Q Consensus 81 ~~C~~c~~Cg 90 (131)
+.|..|..|+
T Consensus 29 ~~CF~C~~C~ 38 (73)
T 1wig_A 29 PSCALCVRCG 38 (73)
T ss_dssp TTTSCCSSSC
T ss_pred CCcCEeCCCC
Confidence 4455555554
No 145
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=38.35 E-value=11 Score=21.62 Aligned_cols=11 Identities=45% Similarity=1.211 Sum_probs=8.6
Q ss_pred CCCccCccCcc
Q psy3924 28 SKGWRCLDCTV 38 (131)
Q Consensus 28 ~~~W~C~~C~~ 38 (131)
.++|.||.|..
T Consensus 34 P~dw~CP~Cga 44 (55)
T 2v3b_B 34 PADWVCPDCGV 44 (55)
T ss_dssp CTTCCCTTTCC
T ss_pred CCCCcCCCCCC
Confidence 56899998854
No 146
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=38.30 E-value=15 Score=22.89 Aligned_cols=11 Identities=36% Similarity=1.193 Sum_probs=7.9
Q ss_pred CCCccCccCcc
Q psy3924 28 SKGWRCLDCTV 38 (131)
Q Consensus 28 ~~~W~C~~C~~ 38 (131)
.++|.||.|..
T Consensus 58 PddW~CPvCga 68 (81)
T 2kn9_A 58 PDDWSCPDCGA 68 (81)
T ss_dssp CTTCCCTTTCC
T ss_pred CCCCcCCCCCC
Confidence 45888888854
No 147
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.05 E-value=7.4 Score=24.31 Aligned_cols=31 Identities=26% Similarity=0.633 Sum_probs=17.8
Q ss_pred CCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCC----ccccCCCc
Q psy3924 49 GRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCA----QCLTCGAT 92 (131)
Q Consensus 49 ~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~----~c~~Cg~~ 92 (131)
+....|..|++.|- ... +||+|- .+..||+.
T Consensus 16 ~~~~~C~~C~~~~~------------~~a-fCPeCgq~Le~lkACGA~ 50 (81)
T 2jrp_A 16 GDTAHCETCAKDFS------------LQA-LCPDCRQPLQVLKACGAV 50 (81)
T ss_dssp SSEEECTTTCCEEE------------EEE-ECSSSCSCCCEEEETTEE
T ss_pred CCceECccccccCC------------Ccc-cCcchhhHHHHHHhcCCc
Confidence 44556888877542 112 677775 35666654
No 148
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=37.96 E-value=13 Score=23.66 Aligned_cols=27 Identities=15% Similarity=0.583 Sum_probs=19.6
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|+..|+..|+...+.. +...||.|+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~ 58 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEK---ASLCCPFCRR 58 (115)
T ss_dssp TTSCEECHHHHCCCCCT---TTSBCTTTCC
T ss_pred CCCCHHhHHHHHHHHhH---CcCCCCCCCc
Confidence 79999999999755432 3457888874
No 149
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=37.39 E-value=19 Score=19.91 Aligned_cols=13 Identities=31% Similarity=1.073 Sum_probs=8.9
Q ss_pred CCCCCCeeccCCCc
Q psy3924 72 HIPRGTWKCKWCAQ 85 (131)
Q Consensus 72 ~~p~~~W~C~~C~~ 85 (131)
.+| .+|.||.|..
T Consensus 26 ~lP-~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLP-DDWCCPVCGV 38 (46)
T ss_dssp GSC-TTCBCTTTCC
T ss_pred hCC-CCCcCcCCCC
Confidence 344 3699998864
No 150
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=37.26 E-value=4.7 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=20.7
Q ss_pred eeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 52 ILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 52 l~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
+.-..|+..||..|+..-+.. .-.||-|+.
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~ 97 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNR 97 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----CSBCSSSCS
T ss_pred EeecccCcEECHHHHHHHHHc----CCcCcCCCC
Confidence 444589999999999765443 235777763
No 151
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.08 E-value=14 Score=21.94 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=11.4
Q ss_pred cccccccCCCCCceeeCcCCCcccCCCC
Q psy3924 39 CEGCAQRHDEGRLILCDECDISYHIYCT 66 (131)
Q Consensus 39 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl 66 (131)
|..|++....+..+ ..-++.||..|.
T Consensus 10 C~~C~~~I~~~~~~--~a~~~~~H~~CF 35 (81)
T 1a7i_A 10 CGACGRTVYHAEEV--QCDGRSFHRCCF 35 (81)
T ss_dssp CSSSCCBCSSTTEE--EETTEEEESSSE
T ss_pred CcCcCccccCceeE--EeCCcccccccC
Confidence 44555543223333 223455665544
No 152
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=36.47 E-value=12 Score=20.22 Aligned_cols=30 Identities=20% Similarity=0.635 Sum_probs=21.7
Q ss_pred ccccccccCC--CCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHD--EGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
.|..|++.-. ..+-+.|..|....|..|..
T Consensus 13 ~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 13 FCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 3566655432 35778999999999998875
No 153
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.42 E-value=40 Score=18.68 Aligned_cols=20 Identities=35% Similarity=1.006 Sum_probs=14.8
Q ss_pred CCCCCCeeccCCC--------ccccCCC
Q psy3924 72 HIPRGTWKCKWCA--------QCLTCGA 91 (131)
Q Consensus 72 ~~p~~~W~C~~C~--------~c~~Cg~ 91 (131)
+.+.+.|-|..|. .|..|++
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCet 33 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACET 33 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCC
T ss_pred CCCCCceECCeeeccCccCCceecCcCC
Confidence 4567899999997 3666654
No 154
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.90 E-value=67 Score=18.69 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=6.6
Q ss_pred CeeccCCCccccCC
Q psy3924 77 TWKCKWCAQCLTCG 90 (131)
Q Consensus 77 ~W~C~~C~~c~~Cg 90 (131)
.|. +.|..|..|+
T Consensus 38 ~~H-~~CF~C~~C~ 50 (82)
T 2ehe_A 38 HFH-EGCFRCCRCQ 50 (82)
T ss_dssp CCB-TTTSBCTTTC
T ss_pred ccc-ccCCeecCCC
Confidence 343 4455555554
No 155
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.79 E-value=48 Score=18.81 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=15.2
Q ss_pred cCCCccccCCCcccccccCCCCCCCccccCCCCcccccchhh
Q psy3924 81 KWCAQCLTCGATGYHIYCTDPPLDHIIFVQDKIRPKRLTTYK 122 (131)
Q Consensus 81 ~~C~~c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~~~~~~ 122 (131)
+.|..|..|+. +|....|......+.|...|.
T Consensus 33 ~~CF~C~~C~~----------~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 33 NDCFNCKKCSL----------SLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp TTTCBCSSSCC----------BCTTSCCEECSSSEECHHHHH
T ss_pred cccCEeccCCC----------cCCCCccEeECCEEEChhHcC
Confidence 44555666653 222333433444555555554
No 156
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.67 E-value=8.9 Score=20.91 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=15.9
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCC
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWC 83 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C 83 (131)
.|+..||..|+...+... ...-.||.|
T Consensus 32 ~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 688888888886443321 123456654
No 157
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.28 E-value=4.5 Score=23.15 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=17.8
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|+..|+..|+...+. .+.-.||.|+.
T Consensus 32 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 58 (66)
T 2ecy_A 32 ECGHRFCESCMAALLS---SSSPKCTACQE 58 (66)
T ss_dssp SSSCCCCHHHHHHHHT---TSSCCCTTTCC
T ss_pred CCCCHHHHHHHHHHHH---hCcCCCCCCCc
Confidence 7888888888864432 22345777764
No 158
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.42 E-value=35 Score=20.80 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=22.1
Q ss_pred ccccccccCC--CCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHD--EGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
+|..|+..-. ..+-+.|..|....|..|..
T Consensus 30 ~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 30 FCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp BCSSSCCBCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCcccCccccccccCCCcCCCcCCccCHhHHh
Confidence 4666665432 35678899999999999985
No 159
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.18 E-value=15 Score=22.07 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=9.0
Q ss_pred cCCCccCccCcc
Q psy3924 27 LSKGWRCLDCTV 38 (131)
Q Consensus 27 ~~~~W~C~~C~~ 38 (131)
..++|.||.|..
T Consensus 37 lPddw~CP~Cga 48 (70)
T 1dx8_A 37 LSDSFMCPACRS 48 (70)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 356899998864
No 160
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=31.86 E-value=14 Score=23.05 Aligned_cols=31 Identities=29% Similarity=0.664 Sum_probs=23.7
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCCCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPP 69 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~ 69 (131)
.|.+|++.+ .+..-.|..|+-..|+.|...+
T Consensus 49 ~C~~C~~~~-~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 49 TCDKCEEEG-TIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCTTTSCCC-CSCEEECTTTCCCCCHHHHHCS
T ss_pred EeCCCCCcC-CCcEEEcCCCCCeEcHHhcCCC
Confidence 477777654 4667889999999999998644
No 161
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.83 E-value=55 Score=19.04 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=18.1
Q ss_pred CeeccCCCccccCCCcccccccCCCCCCCccccCCCCcccccchhhh
Q psy3924 77 TWKCKWCAQCLTCGATGYHIYCTDPPLDHIIFVQDKIRPKRLTTYKA 123 (131)
Q Consensus 77 ~W~C~~C~~c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~~~~~~~ 123 (131)
.|. +.|..|..|+. +|....|......+.|...|.+
T Consensus 38 ~~H-~~CF~C~~C~~----------~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 38 VWH-KDCFTCSNCKQ----------VIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp EEE-TTTCCCSSSCC----------CCTTSCEEEETTEEEEHHHHHH
T ss_pred ccc-cccCchhhCCC----------ccCCCccEeeCCEEECHHHHHH
Confidence 454 56666767753 3332233334445556555543
No 162
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.42 E-value=59 Score=18.81 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=16.1
Q ss_pred cCCCccccCCCcccccccCCCCCCCccccCCCCcccccchhhh
Q psy3924 81 KWCAQCLTCGATGYHIYCTDPPLDHIIFVQDKIRPKRLTTYKA 123 (131)
Q Consensus 81 ~~C~~c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~~~~~~~ 123 (131)
+.|..|..|+. +|....+......+.+...|..
T Consensus 39 ~~CF~C~~C~~----------~L~~~~~~~~~~~~yC~~cy~~ 71 (80)
T 2cuq_A 39 RECLVCTGCQT----------PLAGQQFTSRDEDPYCVACFGE 71 (80)
T ss_dssp TTTCBCSSSCC----------BCTTCCEEECSSSEEEHHHHHH
T ss_pred hhhCCcccCCC----------cCCCCeeEeECCEEECHHHHHH
Confidence 45556666653 2222233334445566665543
No 163
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.18 E-value=48 Score=19.13 Aligned_cols=15 Identities=33% Similarity=0.930 Sum_probs=11.6
Q ss_pred CCCCCCCeeccCCCc
Q psy3924 71 DHIPRGTWKCKWCAQ 85 (131)
Q Consensus 71 ~~~p~~~W~C~~C~~ 85 (131)
.+.+.+.|-|..|-+
T Consensus 25 FK~~~GsWeC~~C~V 39 (57)
T 2ebv_A 25 FKRPIGSWECSVCCV 39 (57)
T ss_dssp CCCCSSSCCCSSSCC
T ss_pred cCCCCCeeeCCeeEc
Confidence 455678999999963
No 164
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=30.98 E-value=34 Score=17.62 Aligned_cols=12 Identities=33% Similarity=1.107 Sum_probs=8.5
Q ss_pred CCCCeeccCCCc
Q psy3924 74 PRGTWKCKWCAQ 85 (131)
Q Consensus 74 p~~~W~C~~C~~ 85 (131)
..|.|-|..|.+
T Consensus 4 ~~G~W~C~~C~v 15 (34)
T 3gj5_B 4 GSGSWDCEVCLV 15 (34)
T ss_dssp --CCEECTTTCC
T ss_pred CCCceECCeeEe
Confidence 457899999963
No 165
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.49 E-value=41 Score=18.58 Aligned_cols=14 Identities=36% Similarity=1.116 Sum_probs=11.0
Q ss_pred CCCCCCeeccCCCc
Q psy3924 72 HIPRGTWKCKWCAQ 85 (131)
Q Consensus 72 ~~p~~~W~C~~C~~ 85 (131)
+.+.+.|-|..|.+
T Consensus 6 k~~~gsW~C~~C~v 19 (47)
T 2ebr_A 6 SGPEGSWDCELCLV 19 (47)
T ss_dssp SSCCSSCCCSSSCC
T ss_pred cCCCCeeECCeeec
Confidence 45678999999963
No 166
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.28 E-value=46 Score=18.15 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=14.2
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|+..|+..|+.. ..-.||.|+.
T Consensus 23 ~CgH~fC~~Ci~~-------~~~~CP~Cr~ 45 (56)
T 1bor_A 23 PCLHTLCSGCLEA-------SGMQCPICQA 45 (56)
T ss_dssp TTSCCSBTTTCSS-------SSSSCSSCCS
T ss_pred CCCCcccHHHHcc-------CCCCCCcCCc
Confidence 4777777777753 1235777764
No 167
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=30.15 E-value=32 Score=20.44 Aligned_cols=28 Identities=21% Similarity=0.693 Sum_probs=20.1
Q ss_pred cccccccCCCCCceeeCcCCCcccCCCCC
Q psy3924 39 CEGCAQRHDEGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 39 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
|..|+..- ..+-+.|..|+...|..|..
T Consensus 38 C~~C~~~l-~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 38 CDLCGREV-LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp CTTTSSBC-SSCCEECTTSSCEECTGGGG
T ss_pred hhhhhHHH-HhCcCccCCCCCeechhhhc
Confidence 55555443 45568899999999998874
No 168
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=29.88 E-value=24 Score=21.15 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=22.8
Q ss_pred ccccccccCC--CCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHD--EGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
+|..|++.-. ..+-+.|..|....|..|..
T Consensus 36 ~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 36 FCSVCHEFVWGLNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp ECSSSCCEECCTTCCEEECSSSCCEEESGGGS
T ss_pred CccccChhhccccccccCcCCCCCcCCHhHHh
Confidence 4677766432 45678999999999999986
No 169
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.82 E-value=6.2 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=17.7
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|+..||..|+...+.. .-.||.|+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 57 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWL----GKRCALCRQ 57 (71)
T ss_dssp TTTEEEEHHHHHHCTTC----SSBCSSSCC
T ss_pred cCCCHHHHHHHHHHHHC----CCcCcCcCc
Confidence 68888999998654432 246777764
No 170
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.60 E-value=5.5 Score=23.04 Aligned_cols=29 Identities=21% Similarity=0.625 Sum_probs=19.1
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|+..||..|+...+.. ..+.-.||.|+.
T Consensus 37 ~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGET-SCGFFKCPLCKT 65 (73)
T ss_dssp TTCCEEEHHHHHHHCSS-SCSCCCCSSSCC
T ss_pred CCCChhhHHHHHHHHHc-CCCCCCCCCCCC
Confidence 89988999998654431 123446777764
No 171
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.05 E-value=55 Score=21.21 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=18.8
Q ss_pred CeeccCCCccccCCCcccccccCCCCCC--CccccCCCCcccccchhhh
Q psy3924 77 TWKCKWCAQCLTCGATGYHIYCTDPPLD--HIIFVQDKIRPKRLTTYKA 123 (131)
Q Consensus 77 ~W~C~~C~~c~~Cg~~~~~~~c~~ppl~--~~~~~~~~~~~~~~~~~~~ 123 (131)
.|. +.|..|..|+. +|. ...|......+.|...|..
T Consensus 83 ~wH-~~CF~C~~C~~----------~L~~~g~~f~~~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 83 YWH-SRCLKCSSCQA----------QLGDIGTSSYTKSGMILCRNDYIR 120 (123)
T ss_dssp EEE-TTTSBCTTTCC----------BGGGTTCCCBCSSSCCBCHHHHHH
T ss_pred EEc-ccccCcCcCCC----------cccccCCceEEECCEEeCHHHhhh
Confidence 353 45666666753 221 1234444556677776654
No 172
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=28.56 E-value=11 Score=21.59 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=22.0
Q ss_pred ccccccccCCCCCceeeCcCC---CcccCCCCCCCCCCCCCCCeeccCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECD---ISYHIYCTDPPLDHIPRGTWKCKWCA 84 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~p~l~~~p~~~W~C~~C~ 84 (131)
.|.+|....++..++-| .|. +.+|..||..-+.. ++.+.|+-|.
T Consensus 8 ~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~ 54 (60)
T 1vyx_A 8 VCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI--SRNTACQICG 54 (60)
T ss_dssp EETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH--HTCSBCTTTC
T ss_pred EeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh--CCCCccCCCC
Confidence 34555443333333333 344 48999999754332 1234555554
No 173
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=28.45 E-value=55 Score=19.32 Aligned_cols=17 Identities=29% Similarity=0.888 Sum_probs=13.0
Q ss_pred CCeeccCCCc--------cccCCCc
Q psy3924 76 GTWKCKWCAQ--------CLTCGAT 92 (131)
Q Consensus 76 ~~W~C~~C~~--------c~~Cg~~ 92 (131)
..|.|+.|.+ |..|++.
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~p 31 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRA 31 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCB
T ss_pred CCCcCCCccccCCCCCCccCcCCCC
Confidence 3799999984 7788653
No 174
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.21 E-value=45 Score=18.60 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=7.7
Q ss_pred CeeccCCCccccCCC
Q psy3924 77 TWKCKWCAQCLTCGA 91 (131)
Q Consensus 77 ~W~C~~C~~c~~Cg~ 91 (131)
.|. +.|..|..|+.
T Consensus 26 ~~H-~~CF~C~~C~~ 39 (66)
T 1nyp_A 26 QWH-VEHFVCAKCEK 39 (66)
T ss_dssp BEE-TTTCBCTTTCC
T ss_pred ccc-cCcCEECCCCC
Confidence 453 45666666653
No 175
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.20 E-value=41 Score=20.31 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=22.4
Q ss_pred ccccccccCC--CCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHD--EGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
+|..|+..-. ..+-+.|..|....|..|..
T Consensus 30 ~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 30 FCSVCKDFVWGLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CCSSSCCCCCSSSCCEEEETTTCCEECTTGGG
T ss_pred ChhhcChhhccccccccccCCcCCeeChhhhh
Confidence 4666665432 35678999999999999985
No 176
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.17 E-value=36 Score=18.45 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=10.3
Q ss_pred CCCceeeCcCCCccc
Q psy3924 48 EGRLILCDECDISYH 62 (131)
Q Consensus 48 ~~~ll~Cd~C~~~~H 62 (131)
....|.|..|+..|-
T Consensus 21 ~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 21 ERGEIVCAKCGYVIE 35 (50)
T ss_dssp TTTEEEESSSCCBCC
T ss_pred CCCeEECcccCCccc
Confidence 344577888887774
No 177
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.82 E-value=59 Score=18.36 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=19.1
Q ss_pred cCCCccccCCCcccccccCCCCCCCccccCCCCcccccchhhhhhH
Q psy3924 81 KWCAQCLTCGATGYHIYCTDPPLDHIIFVQDKIRPKRLTTYKADAA 126 (131)
Q Consensus 81 ~~C~~c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~~~~~~~~~~ 126 (131)
+.|..|..|+. +|....|......+.|...|.+.-+
T Consensus 31 ~~CF~C~~C~~----------~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 31 VGCFVCSTCRA----------QLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTTCBCSSSCC----------BCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred ccCCcccccCC----------cCCcCcCEeeCCeEECHHHHHHHHc
Confidence 44556666653 2323334444556777777765433
No 178
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=27.05 E-value=4.2 Score=25.59 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=25.7
Q ss_pred cccccccCCCCCceeeCcCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 39 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
|.+|... -..-+.+..|+..|+..|+...+... ...||.|+.
T Consensus 25 C~IC~~~--~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~ 66 (100)
T 3lrq_A 25 CFICMEK--LRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRA 66 (100)
T ss_dssp CTTTCSB--CSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCC
T ss_pred CccCCcc--ccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCC
Confidence 4555542 23455668899999999986433221 146777764
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.44 E-value=83 Score=18.71 Aligned_cols=12 Identities=17% Similarity=-0.197 Sum_probs=6.2
Q ss_pred CCcccccchhhh
Q psy3924 112 KIRPKRLTTYKA 123 (131)
Q Consensus 112 ~~~~~~~~~~~~ 123 (131)
...+.|...|.+
T Consensus 70 ~g~~yC~~~y~~ 81 (89)
T 1x64_A 70 EGELYCETHARA 81 (89)
T ss_dssp TTEEECHHHHHH
T ss_pred CCEEECHHHHHH
Confidence 344555555543
No 180
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.33 E-value=43 Score=19.86 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.3
Q ss_pred CCcccCCCC
Q psy3924 58 DISYHIYCT 66 (131)
Q Consensus 58 ~~~~H~~Cl 66 (131)
++.||..|.
T Consensus 35 ~~~wH~~CF 43 (82)
T 2co8_A 35 GHFFHRSCF 43 (82)
T ss_dssp TBCCBTTTC
T ss_pred CCeeCCCcC
Confidence 445554443
No 181
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.14 E-value=24 Score=22.23 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=8.2
Q ss_pred CCCccCccCcc
Q psy3924 28 SKGWRCLDCTV 38 (131)
Q Consensus 28 ~~~W~C~~C~~ 38 (131)
.++|.||.|..
T Consensus 66 PddW~CPvCga 76 (87)
T 1s24_A 66 PDDWCCPDCGA 76 (87)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCCCCCCCC
Confidence 46899888853
No 182
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.32 E-value=36 Score=21.74 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.5
Q ss_pred CCcccCCCC
Q psy3924 58 DISYHIYCT 66 (131)
Q Consensus 58 ~~~~H~~Cl 66 (131)
++.||..|.
T Consensus 23 ~~~~H~~CF 31 (126)
T 2xqn_T 23 NQNWHLKHF 31 (126)
T ss_dssp TEEECGGGS
T ss_pred CCCccCCCC
Confidence 445555444
No 183
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.19 E-value=36 Score=20.30 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=8.7
Q ss_pred CCceeeCcCCCccc
Q psy3924 49 GRLILCDECDISYH 62 (131)
Q Consensus 49 ~~ll~Cd~C~~~~H 62 (131)
+..|.|..|+.+|=
T Consensus 24 ~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 24 KTELISKGAGLAYP 37 (69)
T ss_dssp SSEEEETTTTEEEE
T ss_pred CCEEEcCCCCcEec
Confidence 44566777776663
No 184
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.59 E-value=1.1e+02 Score=19.52 Aligned_cols=8 Identities=50% Similarity=1.124 Sum_probs=4.0
Q ss_pred CCcccCCC
Q psy3924 58 DISYHIYC 65 (131)
Q Consensus 58 ~~~~H~~C 65 (131)
++.||..|
T Consensus 29 ~~~~H~~C 36 (123)
T 2l3k_A 29 DKVYHLEC 36 (123)
T ss_dssp SCCCCTTT
T ss_pred Cccccccc
Confidence 44555544
No 185
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.44 E-value=10 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=18.6
Q ss_pred cCCCcccCCCCCCCCCCCCCCCeeccCCCc
Q psy3924 56 ECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85 (131)
Q Consensus 56 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 85 (131)
.|+..|+..|+...+... .+...||.|+.
T Consensus 38 ~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 66 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQK-KGPSQCPLCKN 66 (112)
T ss_dssp TTSCCCCSHHHHHHHHSS-SSSCCCTTTSC
T ss_pred CCCCHHHHHHHHHHHHhC-CCCCCCcCCCC
Confidence 788888888886433221 23456888764
No 186
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=24.29 E-value=29 Score=18.12 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCC-CCCCCeeccCCC
Q psy3924 61 YHIYCTDPPLDH-IPRGTWKCKWCA 84 (131)
Q Consensus 61 ~H~~Cl~p~l~~-~p~~~W~C~~C~ 84 (131)
|.+.|..|-.+. .-++.|+|..|-
T Consensus 4 yD~~C~KPC~T~DDCS~gw~CqaC~ 28 (38)
T 4cpa_I 4 ADPICNKPCKTHDDCSGAWFCQACW 28 (38)
T ss_dssp SCTTTTCBCSSSSSSCCCSSCCEEE
T ss_pred cccccCCCccCccccccchHHHHHH
Confidence 445565553322 345789999884
No 187
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.22 E-value=34 Score=20.31 Aligned_cols=13 Identities=8% Similarity=0.465 Sum_probs=8.5
Q ss_pred CCceeeCcCCCcc
Q psy3924 49 GRLILCDECDISY 61 (131)
Q Consensus 49 ~~ll~Cd~C~~~~ 61 (131)
+..|.|..|+.+|
T Consensus 24 ~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 24 KDELICKGDRLAF 36 (68)
T ss_dssp TTEEEETTTTEEE
T ss_pred CCEEEcCCCCcEe
Confidence 4556677777666
No 188
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.75 E-value=35 Score=20.38 Aligned_cols=16 Identities=6% Similarity=0.447 Sum_probs=10.5
Q ss_pred CCCceeeCcCCCcccC
Q psy3924 48 EGRLILCDECDISYHI 63 (131)
Q Consensus 48 ~~~ll~Cd~C~~~~H~ 63 (131)
.+..|.|..|+.+|=.
T Consensus 23 ~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 23 AQAELVCNADRLAFPV 38 (70)
T ss_dssp TTTEEEETTTTEEEEE
T ss_pred CCCEEEcCCCCceecC
Confidence 3455678888777743
No 189
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.63 E-value=36 Score=20.21 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=9.2
Q ss_pred CCceeeCcCCCccc
Q psy3924 49 GRLILCDECDISYH 62 (131)
Q Consensus 49 ~~ll~Cd~C~~~~H 62 (131)
+..|.|..|+.+|=
T Consensus 24 ~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 24 KQELWSRQAKLAYP 37 (68)
T ss_dssp TTEEEETTTTEEEE
T ss_pred CCEEEcCCCCcEec
Confidence 45566777777763
No 190
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.59 E-value=39 Score=19.44 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=21.5
Q ss_pred ccccccccCC--CCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRHD--EGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
+|..|+..-. ..+-+.|..|....|..|..
T Consensus 26 ~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 26 YCYECEGLLWGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp CCTTTCCCCCSSCCEEEEETTTCCEECTTHHH
T ss_pred ChhhcChhhcccCcceeEcCCCCCeeCHHHHh
Confidence 4666665432 34668899999999999875
No 191
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.54 E-value=42 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=13.2
Q ss_pred ccccccccCCCCCceeeCcCCCcccCCCC
Q psy3924 38 VCEGCAQRHDEGRLILCDECDISYHIYCT 66 (131)
Q Consensus 38 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl 66 (131)
.|..|++....+..|. .-++.||..|.
T Consensus 9 ~C~~C~~~I~~~~~v~--a~g~~wH~~CF 35 (192)
T 1b8t_A 9 KCGVCQKAVYFAEEVQ--CEGSSFHKSCF 35 (192)
T ss_dssp ECTTTCCEECSSCCEE--ETTEEECTTTC
T ss_pred cCccCCCeecceeEEE--eCCceecCCCC
Confidence 3555555433233332 34566776655
No 192
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=23.32 E-value=48 Score=20.62 Aligned_cols=13 Identities=38% Similarity=1.219 Sum_probs=8.7
Q ss_pred CCCCCeeccCCCc
Q psy3924 73 IPRGTWKCKWCAQ 85 (131)
Q Consensus 73 ~p~~~W~C~~C~~ 85 (131)
.+.++|.|+.|.+
T Consensus 61 ~~~g~W~C~~C~~ 73 (92)
T 3gj8_B 61 KPEGSWDCEVCLV 73 (92)
T ss_dssp ---CCEECTTTCC
T ss_pred CCCCcccCCcCCc
Confidence 3568999999963
No 193
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.55 E-value=71 Score=17.94 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=18.3
Q ss_pred ccCCCccccCCCcccccccCCCCCCCccccCCCCcccccchhhhh
Q psy3924 80 CKWCAQCLTCGATGYHIYCTDPPLDHIIFVQDKIRPKRLTTYKAD 124 (131)
Q Consensus 80 C~~C~~c~~Cg~~~~~~~c~~ppl~~~~~~~~~~~~~~~~~~~~~ 124 (131)
-+.|..|..|+. +|....|......+.|...|...
T Consensus 28 H~~CF~C~~C~~----------~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 28 HPECFRCDLCQE----------VLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp CTTTSBCSSSCC----------BCSSSCCEEETTEEECHHHHHHH
T ss_pred cccCCEeCCCCC----------cCCCCccEeECCeEECHHHhhhh
Confidence 456666766753 23333344444556666666543
No 194
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=21.45 E-value=51 Score=20.18 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.6
Q ss_pred CCCeeccCCCc
Q psy3924 75 RGTWKCKWCAQ 85 (131)
Q Consensus 75 ~~~W~C~~C~~ 85 (131)
...|.|+-|.+
T Consensus 15 ~~tWVCpICsf 25 (76)
T 2j9u_B 15 VSTWVCPICMV 25 (76)
T ss_dssp CEEEECTTTCC
T ss_pred ccceECccccc
Confidence 34799999984
No 195
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.43 E-value=94 Score=17.99 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=18.5
Q ss_pred CeeccCCCccccCCCcccccccCCCCCCCccccCC-CCcccccchhhh
Q psy3924 77 TWKCKWCAQCLTCGATGYHIYCTDPPLDHIIFVQD-KIRPKRLTTYKA 123 (131)
Q Consensus 77 ~W~C~~C~~c~~Cg~~~~~~~c~~ppl~~~~~~~~-~~~~~~~~~~~~ 123 (131)
.|. +.|..|..|+. +|....|... ...+.+...|.+
T Consensus 36 ~~H-~~CF~C~~C~~----------~L~~~~f~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 36 AYH-PGCFTCVVCHR----------GLDGIPFTVDATSQIHCIEDFHR 72 (81)
T ss_dssp EEC-TTTCBCSSSCC----------BCTTSCEECCTTCCCEEHHHHHH
T ss_pred ccc-HHhcCcccCCC----------ccCCCeeEECCCCEEECHHHHHH
Confidence 453 55666666653 2333334333 355666666643
No 196
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=1e+02 Score=19.32 Aligned_cols=27 Identities=26% Similarity=0.615 Sum_probs=13.0
Q ss_pred cccccccCCCCCceeeCcCCCcccCCCCC
Q psy3924 39 CEGCAQRHDEGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 39 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
|..|++.......| ..-++.||..|..
T Consensus 6 C~~C~~~I~~~~~~--~a~~~~wH~~CF~ 32 (114)
T 1j2o_A 6 CGGCQQNIGDRYFL--KAIDQYWHEDCLS 32 (114)
T ss_dssp BSSSCSCBCSSEEE--ECSSSEECTTTCC
T ss_pred CcCCCCeeCCcEEE--EECchhHHHhcCc
Confidence 45555543322222 2345667776553
No 197
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.05 E-value=44 Score=19.83 Aligned_cols=14 Identities=14% Similarity=0.562 Sum_probs=9.7
Q ss_pred CCceeeCcCCCccc
Q psy3924 49 GRLILCDECDISYH 62 (131)
Q Consensus 49 ~~ll~Cd~C~~~~H 62 (131)
+..|.|..|+.+|=
T Consensus 26 ~g~LvC~~c~~~YP 39 (67)
T 2jny_A 26 EQLLVNERLNLAYR 39 (67)
T ss_dssp TTEEEETTTTEEEE
T ss_pred CCEEEcCCCCcccc
Confidence 44567888887773
No 198
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.66 E-value=1.4e+02 Score=17.34 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=5.5
Q ss_pred cCCCccccCC
Q psy3924 81 KWCAQCLTCG 90 (131)
Q Consensus 81 ~~C~~c~~Cg 90 (131)
+.|..|..|+
T Consensus 39 ~~CF~C~~C~ 48 (79)
T 2cor_A 39 PDHFNCANCG 48 (79)
T ss_dssp TTTSBCSSSC
T ss_pred CCCCEeCCCC
Confidence 4555566664
No 199
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=20.29 E-value=34 Score=19.57 Aligned_cols=30 Identities=20% Similarity=0.648 Sum_probs=21.4
Q ss_pred ccccccccC--CCCCceeeCcCCCcccCCCCC
Q psy3924 38 VCEGCAQRH--DEGRLILCDECDISYHIYCTD 67 (131)
Q Consensus 38 ~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~ 67 (131)
.|..|++.- -..+-+.|..|....|..|..
T Consensus 22 ~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 22 FCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred cccccChhhhccCceeeECCCCCCeEchhHhh
Confidence 455665532 235678999999999999885
Done!