RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3924
(131 letters)
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 78.0 bits (192), Expect = 3e-20
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 28 SKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCL 87
+ +D +C+ C++ ++ +L+ CD CD +YHI+C PPL IPRG W+C C
Sbjct: 8 HSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67
Query: 88 TCGAT 92
Sbjct: 68 CKQPP 72
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 72.0 bits (176), Expect = 1e-17
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 20 LPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWK 79
L +++ + + W+C++C C C ++ +L+ CD+CD YH+YC +PP+ P G+W
Sbjct: 42 LNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWS 101
Query: 80 CKWCAQCLTCGAT 92
C C + L A+
Sbjct: 102 CHLCWELLKEKAS 114
Score = 47.0 bits (111), Expect = 5e-08
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 30 GWRCLDCTVC-EGCAQRHDEGRLILCDECDISYHIYCTDPPLDH---IPRGTWKCKWCAQ 85
G C C + L+ C +C S H C L+ + W+C C
Sbjct: 1 GSYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKS 60
Query: 86 CLTCGAT--------------GYHIYCTDPPLDHI 106
C+ CG + GYH+YC +PP+
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEP 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 71.5 bits (175), Expect = 1e-17
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 21 PISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKC 80
+ GW+C +C VC+ C Q ++ ++++CD CD YH +C P + +P WKC
Sbjct: 39 IAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKC 98
Query: 81 KWCAQCLTCGATG 93
K C C++ ++G
Sbjct: 99 KNCRICISGPSSG 111
Score = 59.6 bits (144), Expect = 7e-13
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 30 GWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTC 89
G C C D C C YH C D + + R W+C C C C
Sbjct: 1 GSSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNC 60
Query: 90 GAT--------------GYHIYCTDPPLDHI 106
+ GYH +C P + +
Sbjct: 61 KQSGEDSKMLVCDTCDKGYHTFCLQPVMKSV 91
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 74.0 bits (181), Expect = 2e-17
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 28 SKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 167 DVNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 67.3 bits (164), Expect = 5e-16
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 18 HDLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGT 77
H S +I G T+C C G L++C++C+ +H+ C P L +P
Sbjct: 7 HHHHGSDIIDEFGTLDDSATICRVC---QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEE 63
Query: 78 WKCKWCAQCLTCGATGYHIYCT 99
W C C +
Sbjct: 64 WSCSLCHVLPDLKEEDVDLQAC 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 63.9 bits (156), Expect = 3e-15
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86
C+ C ++ ++ +LILCDEC+ ++H++C P L +P G W+C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 77
Score = 63.7 bits (155), Expect = 8e-15
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 31 WRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRG-TWKCKWCAQ 85
+C C+ C C +H+ +LCDEC+++YHIYC +PPLD +P W C C
Sbjct: 22 KKCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex;
1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A
2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 61.4 bits (149), Expect = 6e-14
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 31 WRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 14 RLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone,
methylation, UHRF1, PHD, ligase-NUCL protein complex;
1.80A {Homo sapiens}
Length = 77
Score = 61.4 bits (149), Expect = 6e-14
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 31 WRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIP-RGTWKCKWC 83
C C C C R D + ++CDECD+++HIYC DPPL +P W C C
Sbjct: 22 RLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 60.8 bits (147), Expect = 2e-13
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 20 LPISKVILSKGWRCLDCTVCEGCAQR-HDEGRLILCDECDISYHIYCTDPPLDHIPRGTW 78
++ + + W+C++C C C + + ++ CD CD +H+ C DPPL +P+G W
Sbjct: 45 PELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMW 104
Query: 79 KCKWCAQ 85
C+ C
Sbjct: 105 ICQICRP 111
Score = 48.9 bits (116), Expect = 8e-09
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 33 CLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDH---IPRGTWKCKWCAQCLTC 89
C C + + LI C +C S H C + + W+C C C +C
Sbjct: 8 CSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSC 67
Query: 90 GAT---------------GYHIYCTDPPLDHI 106
G+H+ C DPPL +
Sbjct: 68 RDQGKNADNMLFCDSCDRGFHMECCDPPLTRM 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 59.9 bits (144), Expect = 3e-12
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGYH 95
T+C C G L++C++C+ +H+ C P L +P W C C
Sbjct: 2 ATICRVC---QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGS 58
Query: 96 IYC 98
+
Sbjct: 59 LSL 61
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 55.9 bits (135), Expect = 6e-12
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
E C D G L+ CD C SYHI+C +PPL IP G W C C
Sbjct: 9 MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 54.7 bits (132), Expect = 1e-11
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 33 CLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+ C C G+L++CD C YH+ C DPPL IP+G W C C
Sbjct: 2 MIHEDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 53.6 bits (129), Expect = 4e-11
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 35 DCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
+ C C D G LI CD C ++H+ C PPL IP GTW+C C
Sbjct: 7 NEDECAVC---RDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 52.8 bits (127), Expect = 8e-11
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
C C G+L++CD C YH+ C DPPL IP+G W C C
Sbjct: 11 FCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 52.4 bits (126), Expect = 1e-10
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 35 DCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86
CE C G +ILCD C +YH+ C DP ++ P G W C C +
Sbjct: 10 HQDYCEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58
Score = 24.3 bits (53), Expect = 5.8
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 74 PRGTWKCKWCAQCLTCGATG-----------YHIYCTDPPLDHI 106
P G+++ C C G YH+ C DP ++
Sbjct: 2 PLGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA 45
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 47.5 bits (113), Expect = 1e-08
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+C GC + D +I CD+CD YH C W C CA
Sbjct: 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 46.2 bits (109), Expect = 5e-08
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDH----IPRGTWKCKWCAQCLTCGA 91
C VC +L+ C EC YH C P + PR W C C + + A
Sbjct: 19 CVVCRQ-MTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77
Query: 92 TG 93
Sbjct: 78 QK 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 47.3 bits (112), Expect = 1e-07
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
C VC + G L+ C++C +H+ C P L + P G W C +C
Sbjct: 7 CAVC------QNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 44.1 bits (104), Expect = 2e-07
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLD---HIPRGTWKCKWCAQCLTC 89
CT+C+ +++CD+C YH C P +D W C+ C T
Sbjct: 9 CTICQEE-YSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 44.1 bits (104), Expect = 3e-07
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 31 WRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86
C++C + + ++ CD C+++ H C P +IP G W C+ C Q
Sbjct: 14 DEDAVCSIC-MDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 43.1 bits (101), Expect = 1e-06
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86
C++C + + ++ CD C+++ H C P +IP G W C+ C Q
Sbjct: 28 CSIC-MDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 75
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 43.0 bits (100), Expect = 4e-06
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGYH 95
C VC + G L+ C++C +H+ C P L P G W C +C
Sbjct: 10 CAVC------QNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDC 63
Query: 96 IYCTDPP 102
Sbjct: 64 DNLQHSK 70
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 36.7 bits (84), Expect = 5e-04
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 27 LSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLD-------HIPRGTWK 79
+S + E C + G LI CD C ++ C L W
Sbjct: 45 MSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWY 104
Query: 80 CKWC 83
C C
Sbjct: 105 CYIC 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 35.6 bits (81), Expect = 0.002
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 8 YGSVCRDVKLHDLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTD 67
+C++ + + S G C C + G LI CD C ++ C
Sbjct: 39 QVLICKNCFKYYMSDDISRDSDGMDEQ-CRWC------AEGGNLICCDFCHNAFCKKCIL 91
Query: 68 PPLD-------HIPRGTWKCKWC 83
L W C C
Sbjct: 92 RNLGRKELSTIMDENNQWYCYIC 114
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A*
3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 35.2 bits (81), Expect = 0.003
Identities = 10/52 (19%), Positives = 13/52 (25%), Gaps = 4/52 (7%)
Query: 36 CTVCEGCAQRHDEGRLILCDECDISYHIYCTDPP-LDHIPRGTWKCKWCAQC 86
C + I CD C YH C + + C C
Sbjct: 11 CICKTPE---DESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.012
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 31/126 (24%)
Query: 19 DLPISKVILSKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIY---------CTDPP 69
I ++LS W + + + + L+ + + I +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 70 LDH---IPRGTWKCKWCAQCLTCGAT--------GYHIYCTDPP----------LDHIIF 108
H + + + L G+H+ + P LD F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRF 502
Query: 109 VQDKIR 114
++ KIR
Sbjct: 503 LEQKIR 508
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for
structural genomics, J protein structure initiative;
HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup
V}
Length = 196
Score = 31.4 bits (71), Expect = 0.051
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLT---CGATGYHIYC 98
+ D+ L L D+ + + H G +K + A H
Sbjct: 62 AKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVG 121
Query: 99 TDPP--LDHIIFVQDKIRPKR 117
+ LD I++V D I R
Sbjct: 122 SAQMSTLDKIVYVADYIEHNR 142
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 31.6 bits (70), Expect = 0.058
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 28 SKGWRCLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRG-TWKCKWCAQ 85
K + + + ++ + I CD C YH C+ + C C
Sbjct: 35 KKEKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 28.3 bits (63), Expect = 0.19
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 44 QRHDEGRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWC 83
+ G ++ CD D +H C L P+G W C C
Sbjct: 12 NQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQC 52
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 27.7 bits (62), Expect = 0.24
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
C + +I C+EC H+ C ++P + C+ C
Sbjct: 9 CMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKCRD 51
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 29.5 bits (65), Expect = 0.28
Identities = 13/72 (18%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Query: 36 CTVCEGCAQRHDEGRL-ILCDECDISYHIYCTDPPLDHIPR-GTWKCKWCAQCLTCGATG 93
V C +D R I CD C +H C + + C C
Sbjct: 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMK 63
Query: 94 YHIYCTDPPLDH 105
+ H
Sbjct: 64 KRRGSSKGHDTH 75
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 27.5 bits (61), Expect = 0.43
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
C + +I C+EC H+ C ++P + C+ C
Sbjct: 24 CMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 64
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 28.8 bits (63), Expect = 0.45
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 36 CTVCEGCAQRHD-EGRLILCDECDISYHIYCTDPPLDH 72
C +C+ C D E +++ C +CD H C + +
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEM 42
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 28.5 bits (62), Expect = 0.62
Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 38 VCEGCAQRHDEGRL-ILCDECDISYHIYCTDPPLDHIPR-GTWKCKWCAQCLTCGATGYH 95
V C Q +D R I CD C +H C H + C CA
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKR 97
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 26.8 bits (59), Expect = 0.79
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
C+ + D R++ CD C + +H C + C C +
Sbjct: 19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta
propeller, abscisic acid, non iron, oxidoreductase;
3.20A {Zea mays}
Length = 529
Score = 28.1 bits (62), Expect = 0.97
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 49 GRLILCDECDISYHIYCTDP-PLDHI----PRGTWKCKWCAQCLTCGATGYHI---YCTD 100
GRL+ E D+ YH+ D L+ + G C A ATG Y
Sbjct: 182 GRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVI 241
Query: 101 PPLDHIIFVQDK 112
F
Sbjct: 242 KRPYLKYFYFRP 253
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 48 EGRLILCD 55
EGRL+LCD
Sbjct: 351 EGRLVLCD 358
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 26.4 bits (58), Expect = 1.4
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 42 CAQRHDEGRLILCDECDISYHIYC---TDPPLDHI--PRGTWKCKWC 83
C Q H+ +I CD C+ +H C ++ + + C C
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 26.4 bits (58), Expect = 1.4
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 35 DCTVCEGCAQRHDEGRL-ILCDECDISYHIYCTDPPLDHIPR-GTWKCKWCAQ 85
V C +D R I CD C +H C + P + C C +
Sbjct: 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 27.4 bits (61), Expect = 1.4
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 48 EGRLILCD 55
EGRL L D
Sbjct: 378 EGRLTLAD 385
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease,
structural genomics; 2.70A {Staphylococcus aureus subsp}
Length = 515
Score = 27.3 bits (61), Expect = 1.5
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 48 EGRLILCD 55
EGRL+L D
Sbjct: 367 EGRLVLAD 374
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 48 EGRLILCD 55
EGRLILCD
Sbjct: 346 EGRLILCD 353
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 27.3 bits (61), Expect = 1.6
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 48 EGRLILCD 55
EGRL+LCD
Sbjct: 335 EGRLVLCD 342
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 26.3 bits (57), Expect = 1.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 44 QRHDEGRLILCDE---CDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+ G +I CD +H C L PRG W C C+Q
Sbjct: 42 HQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962
aminopeptidase, hydrolase, manganese, metal-binding,
protea structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 27.3 bits (61), Expect = 1.6
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 48 EGRLILCD 55
EGR++L D
Sbjct: 334 EGRVVLAD 341
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 1.7
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 53 LCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGA 91
L S + DH W + Q + +
Sbjct: 418 LATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTS 456
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 27.3 bits (61), Expect = 1.8
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 48 EGRLILCD 55
EGRL+LCD
Sbjct: 354 EGRLVLCD 361
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 27.0 bits (60), Expect = 1.8
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 48 EGRLILCD 55
EGR++L D
Sbjct: 374 EGRIVLGD 381
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 1 MNCDVIAYGSV--CRDVKLHDLPI 22
+NC +IA G CR+++L +P+
Sbjct: 330 VNCAIIANGITKACRELEL-KVPL 352
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 27.1 bits (60), Expect = 2.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 48 EGRLILCD 55
EGRLIL D
Sbjct: 336 EGRLILAD 343
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 27.0 bits (58), Expect = 2.4
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 86 CLTCGATGYHI-----YCTDPPLDHIIFVQDKIRPKRLTT 120
C CG + + C DPP D F+ P+ T
Sbjct: 20 CXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPGIPRXYTL 59
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 26.3 bits (57), Expect = 2.6
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 36 CTVCEGCAQRHDEGRLILC--DECDISYHIYCTDPPL------DHIPRGTWKCKWCAQCL 87
CT+C +++C + C + + C D + I W C C
Sbjct: 82 CTIC------CGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135
Query: 88 TCG 90
T G
Sbjct: 136 TYG 138
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 26.8 bits (58), Expect = 2.7
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 28/85 (32%)
Query: 34 LDCTVCEGCAQRHDE--------------------GRLILCD--ECDISYHIYCTDPPL- 70
+ +C C + + L++C +C Y C D +
Sbjct: 68 FEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVG 127
Query: 71 -----DHIPRGTWKCKWCAQCLTCG 90
W C C G
Sbjct: 128 PGTSGKVHAMSNWVCYLCLPSSRSG 152
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 25.2 bits (55), Expect = 3.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 39 CEGCAQRHDEGRL-ILCDECDISYHIYC---TDPPLDHIPRGTWKCKWCAQ 85
C C + + I CD C++ +H C T +HI + +KC C+
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQ--YKCPSCSN 57
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion
protein, signal transduction, transcription, metal BI
WNT proteins; 1.90A {Homo sapiens}
Length = 105
Score = 25.7 bits (55), Expect = 3.3
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 39 CEGCAQ-RHDEGRLILCD-ECDISYHIYCT------DPPLDHIPRGTWKCKWCAQ 85
C C +D+ ILC+ C +H CT L W C C +
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural
genomics, JOIN for structural genomics, JCSG; HET: UNL
PG4 DGI; 1.90A {Bacillus halodurans}
Length = 188
Score = 26.0 bits (57), Expect = 3.4
Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 42 CAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLT---CGATGYHIYC 98
R L E I L H P G + + A +H
Sbjct: 54 AKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTG 113
Query: 99 TDP--PLDHIIFVQDKIRPKR 117
L+ IIF+ D I P R
Sbjct: 114 RPNMSLLEKIIFLADYIEPNR 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.6
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 7/23 (30%)
Query: 116 KRLTT----YKADAA---TLQAN 131
K+L Y D+A ++A
Sbjct: 23 KKLQASLKLYADDSAPALAIKAT 45
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 26.3 bits (59), Expect = 3.6
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 1 MNCDVIAYGSV--CRDVKLHDLPI 22
+ CD+IA G + +V + ++P+
Sbjct: 323 VRCDLIADGIIGAVAEVGV-NVPV 345
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 26.1 bits (58), Expect = 3.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 48 EGRLILCD 55
EGRLIL D
Sbjct: 334 EGRLILAD 341
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 24.8 bits (54), Expect = 3.9
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 44 QRHDEGRLILCDE---CDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+ G +I CD +H C D L P+G W C C Q
Sbjct: 15 HQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57
>1wen_A Inhibitor of growth family, member 4; ING1-like protein;
structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 24.5 bits (53), Expect = 5.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 44 QRHDEGRLILCDE---CDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+ G +I CD +H C L PRG W C C+Q
Sbjct: 22 HQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64
>2ox0_A JMJC domain-containing histone demethylation PROT;
double-stranded beta helix, demethylase, oxygenase,
SGC, STR genomics, structural genomics consortium,
oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens}
PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A*
2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A*
2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Length = 381
Score = 25.8 bits (55), Expect = 5.7
Identities = 4/37 (10%), Positives = 10/37 (27%)
Query: 53 LCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTC 89
+ + + PP + PR ++
Sbjct: 56 IESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVIPAP 92
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 25.3 bits (54), Expect = 6.0
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 24 KVILSKGWRCLDC--TVCEGCAQRHDEGRLILCDECDISYHIYC 65
+++L+ +CL+C VC+ C+ H E + LCD C ++ +
Sbjct: 79 RLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARVVKI 122
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A
2qic_A*
Length = 60
Score = 24.0 bits (52), Expect = 6.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 44 QRHDEGRLILCDECDI---SYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+ G +I CD D +H C L PRG W C C+Q
Sbjct: 16 HQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 25.3 bits (54), Expect = 6.4
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 37 TVCEGCAQ--RHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86
C C + ++C++C + C ++ P W CK C +
Sbjct: 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107
>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A
{Aeropyrum pernix} PDB: 3p1z_B
Length = 186
Score = 25.1 bits (54), Expect = 6.7
Identities = 7/61 (11%), Positives = 20/61 (32%)
Query: 45 RHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGYHIYCTDPPLD 104
+G + ++ + L +I R + + + + + +Y P +D
Sbjct: 73 AKPDGSSVGVEDLRTAVRGNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAVYRLGPGID 132
Query: 105 H 105
Sbjct: 133 A 133
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 24.1 bits (52), Expect = 7.0
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 44 QRHDEGRLILCDECDIS---YHIYCTDPPLDHIPRGTWKCKWC 83
+ G +I CD +H C L + P+G W C C
Sbjct: 17 NQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKC 57
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 24.1 bits (52), Expect = 8.7
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 42 CAQRHDEGRL-ILCDECDISYHIYCTDPPLDHIPR-GTWKCKWC 83
C Q ++ I C C +H C ++ + C C
Sbjct: 17 CRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.511
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,102,690
Number of extensions: 115657
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 164
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)