RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3924
(131 letters)
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 52.3 bits (125), Expect = 6e-11
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 35 DCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTC 89
T+C C G L++C++C+ +H+ C P L +P W C C
Sbjct: 6 SATICRVC---QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 57
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 50.7 bits (121), Expect = 2e-10
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQC 86
C+ C ++ ++ +LILCDEC+ ++H++C P L +P G W+C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 44.9 bits (106), Expect = 3e-08
Identities = 23/52 (44%), Positives = 26/52 (50%)
Query: 39 CEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCG 90
E C D G L+ CD C SYHI+C +PPL IP G W C C G
Sbjct: 9 MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 43.9 bits (103), Expect = 1e-07
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 35 DCTVCEGCAQRHDEGR-LILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQ 85
+ V C + D+G ++ CD C + +H C + C C +
Sbjct: 14 NWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 43.3 bits (101), Expect = 3e-07
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 37 TVCEGCAQRHDE--GRLILCDECDISYHIYCTDPPLD----HIPRGTWKCKWCAQ 85
C C Q +L+ C EC YH C P + + PR W C C +
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 38.5 bits (89), Expect = 1e-05
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 32 RCLDCTVCEGCAQRHDEGR-LILCDECDISYHIYCTDPPLDHIP-RGTWKCKWCA 84
C C + + I CD C++ +H C +KC C+
Sbjct: 2 SSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 35.8 bits (82), Expect = 2e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 42 CAQRHDEGRLILCDECDISYHIYC-----TDPPLDHIPRGTWKCKWC 83
C Q H+ +I CD C+ +H C L + C C
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 31.9 bits (72), Expect = 0.015
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 37 TVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGYHI 96
+ EG A R +G + Y + RG ++ K L +
Sbjct: 54 AIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE-KRFKALLKQLEQDTNS 112
Query: 97 YCTDPPLDHII 107
+ II
Sbjct: 113 ILFIDEIHTII 123
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 30.0 bits (67), Expect = 0.020
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 36 CTVCEGCAQRHDEGRL-ILCDECDISYHIYCTDPPLDHIPR-GTWKCKWC 83
V C Q ++ I C C +H C ++ + C C
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.0 bits (59), Expect = 0.45
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 26 ILSKGWRCLDCTVCEGCAQ--RHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWC 83
+ K C C + ++C++C + C ++ P W CK C
Sbjct: 38 TMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC 97
Query: 84 AQCL 87
+
Sbjct: 98 LEQR 101
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 26.4 bits (58), Expect = 0.59
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 38 VCEGCAQRHDEGRLILCDECDISYHIYCTDPP 69
C+ C + CDECD H C
Sbjct: 49 TCDKC-EEEGTIWSYHCDECDFDLHAKCALNE 79
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 25.2 bits (54), Expect = 3.1
Identities = 10/113 (8%), Positives = 24/113 (21%), Gaps = 5/113 (4%)
Query: 2 NCDVIAYGSVCRDVKLHDLPISKVILSKGWRC-----LDCTVCEGCAQRHDEGRLILCDE 56
DVI + ++ + L V+ G R + + G +L +
Sbjct: 35 QADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELARAGNRVLRLK 94
Query: 57 CDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGATGYHIYCTDPPLDHIIFV 109
+ + + + + V
Sbjct: 95 GGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAV 147
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 25.0 bits (54), Expect = 3.6
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 8/69 (11%)
Query: 14 DVKLHDLPISKVILSKGWRCLDC-TVCEGCAQRHDEG-------RLILCDECDISYHIYC 65
D+ DLP+ + G C C + + I YHI
Sbjct: 95 DIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSGRGYHIRV 154
Query: 66 TDPPLDHIP 74
D +
Sbjct: 155 LDEWALKLD 163
>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 308
Score = 24.8 bits (54), Expect = 4.1
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 53 LCDECDISYHIYCTDPPLDHIP 74
+ ++ T+ D I
Sbjct: 113 TASMIGVRGELHGTEVDFDSIA 134
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 23.4 bits (49), Expect = 8.0
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 75 RGTWKCKWCAQCLTCGATGYHIYCTDPPLDHI 106
TW+ ++ GY D
Sbjct: 20 IKTWRPRYFLLKNDGTFIGYKERPQDVDQREA 51
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 194
Score = 23.4 bits (49), Expect = 9.8
Identities = 8/75 (10%), Positives = 18/75 (24%)
Query: 33 CLDCTVCEGCAQRHDEGRLILCDECDISYHIYCTDPPLDHIPRGTWKCKWCAQCLTCGAT 92
+ G G C +C+ YC++ + + G
Sbjct: 73 PNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVV 132
Query: 93 GYHIYCTDPPLDHII 107
H + + +
Sbjct: 133 NDHFFAQSSFATYAL 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.511
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 553,705
Number of extensions: 26632
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 58
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.7 bits)