Query psy3925
Match_columns 210
No_of_seqs 202 out of 580
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:53:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jui_A Translation initiation 100.0 3.6E-40 1.2E-44 270.5 17.6 169 34-210 8-182 (182)
2 1paq_A Translation initiation 100.0 1.1E-38 3.6E-43 263.1 16.9 164 39-210 21-188 (189)
3 3d3m_A Eukaryotic translation 100.0 1.7E-28 5.7E-33 198.6 14.9 147 39-202 7-168 (168)
4 2ful_A EIF-5, eukaryotic trans 100.0 8.4E-29 2.9E-33 202.0 8.6 113 81-209 50-167 (177)
5 2iu1_A EIF5, eukaryotic transl 99.9 2.2E-27 7.6E-32 198.0 11.7 103 106-208 53-160 (208)
6 3l6a_A Eukaryotic translation 99.9 1.5E-22 5.2E-27 181.5 15.6 122 76-202 228-364 (364)
7 1ug3_A EIF4GI, eukaryotic prot 99.7 3.8E-18 1.3E-22 151.3 9.0 126 43-180 210-336 (339)
8 1h2v_C 80 kDa nuclear CAP bind 96.7 0.031 1.1E-06 54.3 14.2 142 22-178 425-606 (771)
9 3c5t_B Exendin-4, exenatide; l 74.5 1.5 5.1E-05 25.1 1.6 13 190-202 9-21 (31)
10 2g49_C Glucagon preproprotein; 59.9 4.5 0.00015 22.7 1.6 12 190-201 17-28 (29)
11 2l63_A GLP-2, glucagon-like pe 54.9 6.6 0.00022 22.7 1.8 13 190-202 17-29 (33)
12 1jrj_A Exendin-4; Trp-CAGE, GL 54.7 5.9 0.0002 23.8 1.6 13 190-202 17-29 (39)
13 2b4n_A Gastric inhibitory poly 50.8 10 0.00035 23.0 2.3 15 190-204 17-31 (42)
14 3iol_B Glucagon; receptor-liga 50.5 8.9 0.00031 21.7 1.8 13 189-201 16-28 (31)
15 1t5q_A Gastric inhibitory poly 49.4 9.6 0.00033 21.5 1.8 12 190-201 17-28 (30)
16 2akf_A Coronin-1A; coiled coil 46.0 38 0.0013 18.9 4.0 25 21-45 6-30 (32)
17 3p8c_E Probable protein brick1 44.6 24 0.00083 24.1 3.6 23 48-70 29-51 (75)
18 3rjo_A Endoplasmic reticulum a 40.1 1.8E+02 0.0062 25.1 15.5 109 63-177 195-309 (419)
19 1deq_A Fibrinogen (alpha chain 39.6 66 0.0022 28.5 6.5 47 26-76 111-157 (390)
20 2rrh_A VIP peptides; peptide h 34.8 18 0.00063 20.0 1.5 13 189-201 16-28 (29)
21 1qoy_A Hemolysin E; toxin, mem 31.7 2.5E+02 0.0085 24.1 13.0 74 16-89 21-100 (318)
22 3c1y_A DNA integrity scanning 29.0 3E+02 0.01 24.2 11.9 83 46-128 172-265 (377)
23 3pp5_A BRK1, protein brick1; t 24.2 76 0.0026 21.4 3.4 25 46-70 27-51 (73)
24 2v75_A Nuclear polyadenylated 23.2 1.7E+02 0.0059 20.8 5.2 33 54-87 20-52 (104)
No 1
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=100.00 E-value=3.6e-40 Score=270.50 Aligned_cols=169 Identities=20% Similarity=0.342 Sum_probs=141.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhh--hcc--hhhhHHH
Q psy3925 34 MRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVE--WNK--KEELVAE 109 (210)
Q Consensus 34 ~rr~~~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~--~~~--~~~l~~~ 109 (210)
|.+-|-|++++.+++.+.+. ..+ +.+++++|+||||||+|++.++|++++ |.|+|+++. +++ .+....+
T Consensus 8 ~~~~~~F~~Ev~~sl~ra~~---e~~-~~d~~~LEinslr~a~N~s~~eV~~av---~~ail~~~~~~~~~~~~~~~~~~ 80 (182)
T 3jui_A 8 MDDIKVFQNEVLGTLQRGKE---ENI-SCDNLVLEINSLKYAYNISLKEVMQVL---SHVVLEFPLQQMDSPLDSSRYCA 80 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HTC-CHHHHHHHHHHHHHHTTCCHHHHHHHH---HHHHHHGGGGGCCSSCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH---cCC-CHHHHHHHHHHHHHHhCcCHHHHHHHH---HHHHHHHHHHhcccccChhhHHH
Confidence 45566788888888877764 434 669999999999999999999999999 999999973 343 2334567
Q ss_pred HHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCc-hhHH-H
Q psy3925 110 QALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSI-KGKI-M 187 (210)
Q Consensus 110 ~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~-~~~~-~ 187 (210)
++.++|++|+|+|.+|+++ .+.|+++|.++|.+|++++.+++.|+.||+.|||.|||+||+|++||+++++. +|++ .
T Consensus 81 a~~~~i~~~~~ll~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~ 159 (182)
T 3jui_A 81 LLLPLLKAWSPVFRNYIKR-AADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLR 159 (182)
T ss_dssp HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHH
Confidence 8899999999999999998 89999999999999999999999999999999999999999999999987754 3544 6
Q ss_pred HHHHHHHHHHHHccCCCCCCCCC
Q psy3925 188 FLEQMKKFVEWLQSAEEGMSSEA 210 (210)
Q Consensus 188 ~~~~~~~FIeWL~eAEEEsdeed 210 (210)
+|++++|||+||++|||||||||
T Consensus 160 vr~~~~~Fi~WL~eAEEEs~ee~ 182 (182)
T 3jui_A 160 KNQQLQRFIQWLKEAEEESSEDD 182 (182)
T ss_dssp TCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhccCcccCCCC
Confidence 88999999999999999999886
No 2
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=100.00 E-value=1.1e-38 Score=263.14 Aligned_cols=164 Identities=20% Similarity=0.236 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhh-hhcchhhh-HHHHHHHHHh
Q psy3925 39 YLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQV-EWNKKEEL-VAEQALKHLK 116 (210)
Q Consensus 39 ~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v-~~~~~~~l-~~~~~~~~l~ 116 (210)
.|.+++.+++.+.+ +..+ +.+++++|+|+||+|+|++.++|++++ |.++|+++ +|++++.+ ..+++.++|+
T Consensus 21 ~F~~Ev~~sL~r~~---~e~~-~~d~iilEin~lr~a~n~s~~ev~~~v---~~a~l~~~~~~~~~~~~~~~~~~~~~l~ 93 (189)
T 1paq_A 21 DFEKEGIATVERAM---ENNH-DLDTALLELNTLRMSMNVTYHEVRIAT---ITALLRRVYHFIATQTLGPKDAVVKVFN 93 (189)
T ss_dssp CHHHHHHHHHHHHH---HTTC-CHHHHHHHHHHHHHHTTCCHHHHHHHH---HHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HcCC-CHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 57888888887776 3444 569999999999999999999999999 99999998 66655444 5678889999
Q ss_pred hHHHHHHHhccCCcHhHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCchhHHHHHHHHHH
Q psy3925 117 QFTPLFGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKK 194 (210)
Q Consensus 117 ~~~~ll~~~~~~~~~~Q~~lL~alq~~c~--~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~~~~~~~~~~~~~ 194 (210)
+|+|+|.+|+++ .+.|+++|.++|.+|+ ++|.+++.|++||+.|||.|||+||+|++||++++.+++..+++++++|
T Consensus 94 ~~~~ll~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~~~v~~~~~~ 172 (189)
T 1paq_A 94 QWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVK 172 (189)
T ss_dssp HHGGGGGGTCCS-HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999988 9999999999999999 7899999999999999999999999999999987644333488999999
Q ss_pred HHHHHccCCCCCCCCC
Q psy3925 195 FVEWLQSAEEGMSSEA 210 (210)
Q Consensus 195 FIeWL~eAEEEsdeed 210 (210)
||+||++|||||||||
T Consensus 173 Fi~WL~eAEeEs~~ee 188 (189)
T 1paq_A 173 WVEWLQNADEESSSEE 188 (189)
T ss_dssp HHHHHHHTC-------
T ss_pred HHHHHhccCccccccC
Confidence 9999999999887765
No 3
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=198.60 Aligned_cols=147 Identities=21% Similarity=0.381 Sum_probs=119.1
Q ss_pred HHHHHHHHH--HHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhhh--cc-hhh--h-----
Q psy3925 39 YLEKMFDEE--MKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEW--NK-KEE--L----- 106 (210)
Q Consensus 39 ~l~k~~ee~--~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~~--~~-~~~--l----- 106 (210)
-|.+.+.+. ...+++.++.+.. .++ .++++|++++ |+++|+++.+ ++ +.. +
T Consensus 7 ~L~~~l~~~~~~~~i~~~i~en~~-~~~-------------~s~~ev~~al---~~avl~~i~~~~~~~~~~~d~~~~~~ 69 (168)
T 3d3m_A 7 ELLKQIKLDPSPQTIYKWIKDNIS-PKL-------------HVDKGFVNIL---MTSFLQYISSEVNPPSDETDSSSAPS 69 (168)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHSC-GGG-------------GGCHHHHHHH---HHHHHHHHHHHHSCCC-------CCC
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCC-ccc-------------CCHHHHHHHH---HHHHHHHHHHhccccccccccccccc
Confidence 344444442 6677777776653 222 3899999999 9999999865 22 211 1
Q ss_pred --HHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCC-ch
Q psy3925 107 --VAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHS-IK 183 (210)
Q Consensus 107 --~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~-~~ 183 (210)
..+++.++|++|+|+|.+|++++.+.|+++|+++|.+|++++.+++.|+.|++.|||.|||+||+|++||+++++ .+
T Consensus 70 k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~ 149 (168)
T 3d3m_A 70 KEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFP 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhh
Confidence 235788899999999999998547899999999999999988889999999999999999999999999998753 45
Q ss_pred hHHHHHHHHHHHHHHHccC
Q psy3925 184 GKIMFLEQMKKFVEWLQSA 202 (210)
Q Consensus 184 ~~~~~~~~~~~FIeWL~eA 202 (210)
|+.+++++++|||+||+||
T Consensus 150 ~~~~~~~~~~~Fi~WL~eA 168 (168)
T 3d3m_A 150 GKGKALFQVNQWLTWLETA 168 (168)
T ss_dssp THHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7889999999999999987
No 4
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-29 Score=202.04 Aligned_cols=113 Identities=25% Similarity=0.418 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHH-hhhhhHHHHHHHHH
Q psy3925 81 PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY-ENMNLMRVFQKIIL 159 (210)
Q Consensus 81 ~~v~~al~~i~~a~m~~v~~~~~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~-~~~~~~~~f~~Il~ 159 (210)
+.+..++ |.++|+ +++.++|++|+|+|.+|+++ .+.|+++|.+||.+|. +++.+++.|++||+
T Consensus 50 ~~~~~vl---~~~lf~------------~~i~~~l~k~~~lL~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~ 113 (177)
T 2ful_A 50 PKIGCVL---AQCLFD------------EDIVNEIAEHNAFFTKILVT-PEYEKNFMGGIERFLGLEHKDLIPLLPKILV 113 (177)
T ss_dssp TTHHHHH---HHHSCS------------TTHHHHTTSCHHHHHHHCCS-HHHHHHHHHHHHHHHHTTCGGGGGGHHHHHH
T ss_pred hHHHHHH---HHHHhc------------hhHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 5666666 777763 34667899999999999987 8999999999999995 68999999999999
Q ss_pred HHhhccCCChHHHHHHhhcCC----CchhHHHHHHHHHHHHHHHccCCCCCCCC
Q psy3925 160 LFYKTDVISEEVILKWYKEGH----SIKGKIMFLEQMKKFVEWLQSAEEGMSSE 209 (210)
Q Consensus 160 ~LYd~DIleEe~Il~W~~~~~----~~~~~~~~~~~~~~FIeWL~eAEEEsdee 209 (210)
.|||.|||+||+|++||++++ +.+++++++++++|||+||++||||||+|
T Consensus 114 ~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEseee 167 (177)
T 2ful_A 114 QLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDEE 167 (177)
T ss_dssp HHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC------
T ss_pred HHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccccccc
Confidence 999999999999999998875 23467889999999999999999887754
No 5
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=197.95 Aligned_cols=103 Identities=23% Similarity=0.407 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCc--
Q psy3925 106 LVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYE-NMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSI-- 182 (210)
Q Consensus 106 l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~-~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~-- 182 (210)
+|.+++.++|++|+|+|.+|++++.+.|+++|.++|.+|.. +|.+++.|++||+.|||.|||+|++|++||++++++
T Consensus 53 lf~~~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~ 132 (208)
T 2iu1_A 53 LFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYV 132 (208)
T ss_dssp HCSTTHHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccc
Confidence 34456778999999999999984379999999999999765 578999999999999999999999999999987632
Q ss_pred -hh-HHHHHHHHHHHHHHHccCCCCCCC
Q psy3925 183 -KG-KIMFLEQMKKFVEWLQSAEEGMSS 208 (210)
Q Consensus 183 -~~-~~~~~~~~~~FIeWL~eAEEEsde 208 (210)
++ .+.++++++|||+||++||||||+
T Consensus 133 ~~e~~k~v~~~~~pFI~WL~EAEEEs~e 160 (208)
T 2iu1_A 133 SKELAKEIRVKAEPFIKWLKEAEEESSG 160 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 32 236799999999999999988764
No 6
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=181.51 Aligned_cols=122 Identities=25% Similarity=0.455 Sum_probs=99.6
Q ss_pred cCCCchhHHHHHHHHHHHHHhhh--hhcc------------hhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHH
Q psy3925 76 NGSVPPTVLQVLINIWSTVMAQV--EWNK------------KEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQ 141 (210)
Q Consensus 76 ~n~~~~~v~~al~~i~~a~m~~v--~~~~------------~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq 141 (210)
.+.+++++.+++ |+++|+.+ +++. +.++ ....++|++|+|+|.+|++++.+.|+++|+++|
T Consensus 228 ~~~~~~~fir~L---~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~--~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq 302 (364)
T 3l6a_A 228 KLHVDKGFVNIL---MTSFLQYISSEVNPPSDETDSSSAPSKEQL--EQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQ 302 (364)
T ss_dssp HHHTCHHHHHHH---HHHHHHHHHHHHC----------CCCHHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHH---HHHHHHHHHHhcccccccccccccccHHHH--HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 356788888899 99999988 3442 2333 233468999999999999983356999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHccC
Q psy3925 142 EFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHS-IKGKIMFLEQMKKFVEWLQSA 202 (210)
Q Consensus 142 ~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~-~~~~~~~~~~~~~FIeWL~eA 202 (210)
.+|++.....+.++.|++.|||.|||+||+|++||+++++ ..|+.+++++++|||+||+||
T Consensus 303 ~~~~~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA 364 (364)
T 3l6a_A 303 VHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 364 (364)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence 9998754334678999999999999999999999998653 357889999999999999987
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.74 E-value=3.8e-18 Score=151.28 Aligned_cols=126 Identities=15% Similarity=0.230 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhh-hhcchhhhHHHHHHHHHhhHHHH
Q psy3925 43 MFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQV-EWNKKEELVAEQALKHLKQFTPL 121 (210)
Q Consensus 43 ~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v-~~~~~~~l~~~~~~~~l~~~~~l 121 (210)
++.+++.+. ++... +.++++..+++..-+++.+.++|++++ |+++|+++ .|++. + ....++|++|+|+
T Consensus 210 ev~~~L~~~---l~~~~-~~~~i~~~i~~~~~~~~~~~~~~~~~l---~~a~~~~~~~~~~~--~--~~~~~~l~~~~pl 278 (339)
T 1ug3_A 210 ELNRQLEKL---LKEGS-SNQRVFDWIEANLSEQQIVSNTLVRAL---MTAVCYSAIIFETP--L--RVDVAVLKARAKL 278 (339)
T ss_dssp HHHHHHHHH---HHTTC-CHHHHHHHHHHHSCHHHHTCHHHHHHH---HHHHHHHTEECSSS--C--EECHHHHHHHHHH
T ss_pred HHHHHHHHH---HHcCC-CHHHHHHHHHhcCChhhCChHHHHHHH---HHHHHHHHHhcCCc--h--HHHHHHHHHHHHH
Confidence 344444444 44444 568999999999999999999999999 99999984 56432 2 1234689999999
Q ss_pred HHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCC
Q psy3925 122 FGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGH 180 (210)
Q Consensus 122 l~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~ 180 (210)
|.+|+++ .+.|+++|+++|.+|+++..+.+.|..+++.|||.|||+||+|++||++..
T Consensus 279 l~~~~~~-~~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~d 336 (339)
T 1ug3_A 279 LQKYLCD-EQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKD 336 (339)
T ss_dssp HHHHCCS-HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC---
T ss_pred HHHHcCC-cHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcCC
Confidence 9999988 899999999999999998777899999999999999999999999998743
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=96.65 E-value=0.031 Score=54.27 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=98.0
Q ss_pred HhHHHHH-HHHHHHHhhHHHHH-------------------------------HHHHHHHHHHHHHhcCChhHHHHHHHH
Q psy3925 22 SLKNFEQ-VFIKLMRRYKYLEK-------------------------------MFDEEMKKVLVFIKGFNETERIKLARM 69 (210)
Q Consensus 22 ~i~~~~~-v~~kl~rr~~~l~k-------------------------------~~ee~~~~~l~~l~~~~~~~~~~llEl 69 (210)
.=+.|++ +|.|++|. .|.+| +.-+.-.++++++++.. +.+..+..+
T Consensus 425 p~r~Fik~ll~k~~RL-Sy~~rIk~~lP~~~~~llp~~p~p~f~y~~e~~~~~p~~~~a~~l~~~ir~k~-~~eei~~~l 502 (771)
T 1h2v_C 425 PKPKFVREVLEKCMRL-SYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKA-TNDEIFSIL 502 (771)
T ss_dssp HHHHHHHHHHHHHHHT-SCHHHHHTTSCGGGGGGSCCCCCCCCTTSTTSCTTSTTHHHHHHHHHHHHTTC-CHHHHHHHG
T ss_pred cHHHHHHHHHHHHHhh-hhHHHHHHhCcHHHHhhCCCCCCCCceeCCccccCCcchHHHHHHHHHHHccC-CHHHHHHHH
Confidence 4477888 89999986 55566 33444688889998866 566666677
Q ss_pred hhHHHhcCCCc--------hhHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHH
Q psy3925 70 TALWITNGSVP--------PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQ 141 (210)
Q Consensus 70 ~~Lrms~n~~~--------~~v~~al~~i~~a~m~~v~~~~~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq 141 (210)
+++--+..... .-.+..+ +++++..+ ++. +. -+...|++|+++|+.++.+ ...|..+|.++-
T Consensus 503 ~~i~~~~~~~~~~~~~~~~~~~i~v~---~q~ll~~G---skS--~S-H~~~~lery~~~lk~l~~~-~~~q~~il~~v~ 572 (771)
T 1h2v_C 503 KDVPNPNQDDDDDEGFSFNPLKIEVF---VQTLLHLA---AKS--FS-HSFSALAKFHEVFKTLAES-DEGKLHVLRVMF 572 (771)
T ss_dssp GGCC-------------CCHHHHHHH---HHHHHHHS---TTC--HH-HHHHHHHHTHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HhchhcccccccccccccchHHHHHH---HHHHHHhc---cch--HH-HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 76432211111 0222333 55555432 221 23 2445899999999999997 889999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhc
Q psy3925 142 EFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKE 178 (210)
Q Consensus 142 ~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~ 178 (210)
.+...+|.. ...++..|-..+||+-.+|..|-=.
T Consensus 573 ~~W~~~~q~---~~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 573 EVWRNHPQM---IAVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HHHTTCHHH---HHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHhcCCce---EehHHHHHHhcCCCCHHHHHHHHcC
Confidence 999888864 4677888889999999999999843
No 9
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=74.47 E-value=1.5 Score=25.07 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccC
Q psy3925 190 EQMKKFVEWLQSA 202 (210)
Q Consensus 190 ~~~~~FIeWL~eA 202 (210)
+.++.||.||.+.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 4688899999864
No 10
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=59.93 E-value=4.5 Score=22.71 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcc
Q psy3925 190 EQMKKFVEWLQS 201 (210)
Q Consensus 190 ~~~~~FIeWL~e 201 (210)
..++.||+||.+
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 468899999974
No 11
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=54.87 E-value=6.6 Score=22.68 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.6
Q ss_pred HHHHHHHHHHccC
Q psy3925 190 EQMKKFVEWLQSA 202 (210)
Q Consensus 190 ~~~~~FIeWL~eA 202 (210)
..++.||+||.+.
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4688999999864
No 12
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=54.72 E-value=5.9 Score=23.76 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=10.6
Q ss_pred HHHHHHHHHHccC
Q psy3925 190 EQMKKFVEWLQSA 202 (210)
Q Consensus 190 ~~~~~FIeWL~eA 202 (210)
..++.||+||.+.
T Consensus 17 ~aak~fv~wL~~~ 29 (39)
T 1jrj_A 17 EAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4688999999864
No 13
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=50.84 E-value=10 Score=23.04 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=12.0
Q ss_pred HHHHHHHHHHccCCC
Q psy3925 190 EQMKKFVEWLQSAEE 204 (210)
Q Consensus 190 ~~~~~FIeWL~eAEE 204 (210)
..++.||.||.+.-.
T Consensus 17 ~~akdFv~WL~~~k~ 31 (42)
T 2b4n_A 17 IHQQDFVNWLLAQKG 31 (42)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 568889999987654
No 14
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=50.47 E-value=8.9 Score=21.68 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcc
Q psy3925 189 LEQMKKFVEWLQS 201 (210)
Q Consensus 189 ~~~~~~FIeWL~e 201 (210)
.+.++.||+||..
T Consensus 16 ~~~ak~Fv~wL~~ 28 (31)
T 3iol_B 16 GQAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 4578999999964
No 15
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=49.43 E-value=9.6 Score=21.47 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcc
Q psy3925 190 EQMKKFVEWLQS 201 (210)
Q Consensus 190 ~~~~~FIeWL~e 201 (210)
..++.||+||.+
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 468889999964
No 16
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.00 E-value=38 Score=18.88 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHHhhHHHHHHHH
Q psy3925 21 QSLKNFEQVFIKLMRRYKYLEKMFD 45 (210)
Q Consensus 21 ~~i~~~~~v~~kl~rr~~~l~k~~e 45 (210)
|++++--.|+++|-.|-+.||.++.
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777788888888887877654
No 17
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=44.59 E-value=24 Score=24.06 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHh
Q psy3925 48 MKKVLVFIKGFNETERIKLARMT 70 (210)
Q Consensus 48 ~~~~l~~l~~~~~~~~~~llEl~ 70 (210)
+.++.+||++|.-.-+.+++.++
T Consensus 29 I~~~v~FLN~F~~sce~KLa~ln 51 (75)
T 3p8c_E 29 IKKIADFLNSFDMSCRSRLATLN 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999988888888887
No 18
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=40.15 E-value=1.8e+02 Score=25.09 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=66.1
Q ss_pred HHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhh---hcc--hhhhHHHHHHHHHhhHHHHHHHhccC-CcHhHHHH
Q psy3925 63 RIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVE---WNK--KEELVAEQALKHLKQFTPLFGAFTDT-APRAELAL 136 (210)
Q Consensus 63 ~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~---~~~--~~~l~~~~~~~~l~~~~~ll~~~~~~-~~~~Q~~l 136 (210)
....+...-+..|+.....+|.......|...|+... +.+ +...+...+. .-+.|..++.+|-.+ +......+
T Consensus 195 ~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~-~~~~~~~l~~~y~~s~~~~ek~~l 273 (419)
T 3rjo_A 195 SERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ-STEGWDFLYSKYQFSLSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT-SHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC-CHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4456666666777777788888877666888775421 111 1222333332 245688888888765 23445567
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhh
Q psy3925 137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYK 177 (210)
Q Consensus 137 L~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~ 177 (210)
|.++- |..+|.+. ..+|....+.++|-...+..+..
T Consensus 274 l~aL~--~s~d~~ll---~~~L~~~l~~~~ir~qD~~~~~~ 309 (419)
T 3rjo_A 274 EFALC--RTQNKEKL---QWLLDESFKGDKIKTQEFPQILT 309 (419)
T ss_dssp HHHHT--TCSCHHHH---HHHHHHHHHTSSSCGGGHHHHHH
T ss_pred HHHcC--CCCCHHHH---HHHHHHHhCCCCCchhHHHHHHH
Confidence 88873 66677643 45556666777766666555554
No 19
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.60 E-value=66 Score=28.51 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhc
Q psy3925 26 FEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITN 76 (210)
Q Consensus 26 ~~~v~~kl~rr~~~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~ 76 (210)
|-||-.-|-+++.||++.|.+.+. -+..|+..- ++...+|..|-.+.
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l---~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNV---RDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455666788899999999999987 556677743 55555665555544
No 20
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=34.81 E-value=18 Score=20.04 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcc
Q psy3925 189 LEQMKKFVEWLQS 201 (210)
Q Consensus 189 ~~~~~~FIeWL~e 201 (210)
...+++||.||.+
T Consensus 16 ~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 16 QMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3468899999964
No 21
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=31.72 E-value=2.5e+02 Score=24.14 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=54.9
Q ss_pred ccccHHHhHHHHHHHHHHHHhhH-HHHHH-----HHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHH
Q psy3925 16 AQEDMQSLKNFEQVFIKLMRRYK-YLEKM-----FDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLIN 89 (210)
Q Consensus 16 ~~~~~~~i~~~~~v~~kl~rr~~-~l~k~-----~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~ 89 (210)
|..+++.+++-.+-+.+.+-+|. +|... |.+.+..+=.++-++....+..+-++.+|-+....++..|.+.++.
T Consensus 21 ~~~~~e~vk~al~Sls~iv~kY~~elD~kvkf~~LQ~aId~ID~~MlgY~G~AK~~LD~lRslns~A~ltY~~cv~~VfE 100 (318)
T 1qoy_A 21 ADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYE 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCCcHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45688999999999998888774 45443 3333434444667778788999999999988888888888887755
No 22
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=28.96 E-value=3e+02 Score=24.19 Aligned_cols=83 Identities=11% Similarity=0.192 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHH--HHHHHHhhh-----hhcchhhhHHHHHHHHHhhH
Q psy3925 46 EEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLIN--IWSTVMAQV-----EWNKKEELVAEQALKHLKQF 118 (210)
Q Consensus 46 e~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~--i~~a~m~~v-----~~~~~~~l~~~~~~~~l~~~ 118 (210)
+..+..++-++++...-|.++..+++|-+..-++..+|..++-. .+..+-+.+ +....+.|+.-|+.+....+
T Consensus 172 ~~l~q~l~tle~y~~~ld~~~~~L~~LE~~D~Vt~~DV~~~~qr~emvrri~~ei~~yv~eLG~dGRL~~~Ql~EL~~~~ 251 (377)
T 3c1y_A 172 SKVTQAISTLEKYKDNFNKLLSELEVLELENRVTLADVVRTLAKGFELLRIVEEIRPYIVELGEEGRLARMQLRELTEDV 251 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 34556666677777777889999999999888999999875521 111111222 23333556655665555554
Q ss_pred HH----HHHHhccC
Q psy3925 119 TP----LFGAFTDT 128 (210)
Q Consensus 119 ~~----ll~~~~~~ 128 (210)
.. +++-|+..
T Consensus 252 e~~~~LIIeDY~~~ 265 (377)
T 3c1y_A 252 DDLLVLLIMDYSSE 265 (377)
T ss_dssp HHHHHHHHHHHSSS
T ss_pred cccccEEEccCCcc
Confidence 44 56666543
No 23
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=24.18 E-value=76 Score=21.44 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHh
Q psy3925 46 EEMKKVLVFIKGFNETERIKLARMT 70 (210)
Q Consensus 46 e~~~~~l~~l~~~~~~~~~~llEl~ 70 (210)
..+.++.+||+.|.-.-+.+++.++
T Consensus 27 ~~I~~~v~FLN~F~~sce~KLa~ln 51 (73)
T 3pp5_A 27 INIQKIVEFLNKFELSTRNKLSDLN 51 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477999999999988899988887
No 24
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=23.17 E-value=1.7e+02 Score=20.82 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=27.9
Q ss_pred HHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHH
Q psy3925 54 FIKGFNETERIKLARMTALWITNGSVPPTVLQVL 87 (210)
Q Consensus 54 ~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al 87 (210)
.+.+|. ++-+-++|.--|.||+|-++.+|..-+
T Consensus 20 ~~~NF~-EDv~YVAEyIvlLisNg~s~~sivqEL 52 (104)
T 2v75_A 20 GIPNFN-EDIKYVAEYIVLLIVNGGTVESVVDEL 52 (104)
T ss_dssp TSTTCC-SCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccCcc-ccHHHHHHHhheeeeCCCChHHHHHHH
Confidence 456788 456788999999999999999998876
Done!