RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3925
         (210 letters)



>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
           epsilon {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 161

 Score = 89.2 bits (221), Expect = 3e-23
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 82  TVLQVLINIWSTVMAQVEWNKKEELVA--EQALKHLKQFTPLFGAFTDTAPRAELALMLK 139
           T  +V I   + ++ +V      + +   +  +K   Q+  LF           + LM  
Sbjct: 37  TYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNI 95

Query: 140 VQEFCY--ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVE 197
           + E            +    ++  Y  D+I E+VI KW+    +        +   K+VE
Sbjct: 96  IMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVE 155

Query: 198 WLQSAE 203
           WLQ+A+
Sbjct: 156 WLQNAD 161


>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 63.8 bits (155), Expect = 7e-14
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 94  VMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRV 153
           + A        E      +  LK    L   +     + EL  +  +Q           +
Sbjct: 47  MTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCD-EQKELQALYALQALVVTLEQPPNL 105

Query: 154 FQKIILLFYKTDVISEEVILKW 175
            +      Y  DV+ E+    W
Sbjct: 106 LRMFFDALYDEDVVKEDAFYSW 127


>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
          thermophilus [TaxId: 274]}
          Length = 205

 Score = 28.9 bits (64), Expect = 0.31
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 69 MTALWITNGSVPPTVLQV 86
          MT ++  + +VP TV+  
Sbjct: 11 MTRIFRDDRAVPVTVILA 28


>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 205

 Score = 28.1 bits (62), Expect = 0.71
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 69 MTALWITNGSVPPTVLQV 86
          MT +W  + ++P TV+  
Sbjct: 11 MTQIWKNDRAIPVTVVLA 28


>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 113

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 65 KLARMTALWITNGSVPPTVLQVLINI 90
          +++R  A+ IT+GSV  T     ++I
Sbjct: 4  QISR--AVLITDGSVLRTDADQQVSI 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 786,062
Number of extensions: 36864
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 15
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)