Query psy3926
Match_columns 512
No_of_seqs 503 out of 2288
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:54:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0721|consensus 99.9 1.1E-25 2.4E-30 216.1 0.4 155 164-320 3-167 (230)
2 COG0484 DnaJ DnaJ-class molecu 99.8 7.7E-22 1.7E-26 204.9 7.1 74 250-323 2-75 (371)
3 KOG0691|consensus 99.8 3.5E-21 7.6E-26 195.5 10.3 104 251-354 4-107 (296)
4 KOG0713|consensus 99.8 1.9E-21 4.2E-26 197.7 8.4 80 244-323 8-87 (336)
5 PRK14288 chaperone protein Dna 99.7 2E-18 4.3E-23 181.5 7.5 70 251-320 2-71 (369)
6 PRK14279 chaperone protein Dna 99.7 8.2E-18 1.8E-22 178.1 7.9 69 251-319 8-76 (392)
7 PRK14296 chaperone protein Dna 99.7 1E-17 2.2E-22 176.2 7.2 69 251-320 3-71 (372)
8 KOG0712|consensus 99.7 1.7E-17 3.6E-22 170.7 7.8 69 251-322 3-71 (337)
9 PRK14286 chaperone protein Dna 99.7 1.9E-17 4.1E-22 174.2 7.6 70 251-320 3-72 (372)
10 KOG0716|consensus 99.7 4.7E-17 1E-21 161.4 8.0 74 251-324 30-103 (279)
11 KOG0717|consensus 99.7 1E-15 2.2E-20 160.7 17.2 69 251-319 7-76 (508)
12 KOG0718|consensus 99.7 5.7E-17 1.2E-21 170.1 6.6 75 248-322 5-82 (546)
13 PRK14294 chaperone protein Dna 99.7 1.1E-16 2.3E-21 168.2 7.9 70 251-320 3-72 (366)
14 PRK14282 chaperone protein Dna 99.7 9.6E-17 2.1E-21 168.7 7.5 70 251-320 3-73 (369)
15 PRK14285 chaperone protein Dna 99.7 8.8E-17 1.9E-21 168.8 7.1 69 252-320 3-71 (365)
16 PRK14295 chaperone protein Dna 99.7 1E-16 2.2E-21 169.6 7.6 66 251-316 8-73 (389)
17 PRK14277 chaperone protein Dna 99.7 1.3E-16 2.7E-21 168.8 8.1 70 251-320 4-73 (386)
18 PF00226 DnaJ: DnaJ domain; I 99.7 1.6E-16 3.6E-21 125.9 6.6 63 253-315 1-64 (64)
19 PRK14297 chaperone protein Dna 99.6 1.4E-16 3E-21 168.2 7.1 70 251-320 3-72 (380)
20 PRK14301 chaperone protein Dna 99.6 1.5E-16 3.2E-21 167.6 7.2 70 251-320 3-72 (373)
21 PRK14287 chaperone protein Dna 99.6 1.7E-16 3.7E-21 167.0 7.8 69 251-320 3-71 (371)
22 PRK14283 chaperone protein Dna 99.6 1.7E-16 3.6E-21 167.4 7.5 69 251-320 4-72 (378)
23 PRK14284 chaperone protein Dna 99.6 2.1E-16 4.5E-21 167.4 7.6 69 252-320 1-69 (391)
24 PTZ00037 DnaJ_C chaperone prot 99.6 2E-16 4.4E-21 168.8 6.9 66 251-320 27-92 (421)
25 PRK14276 chaperone protein Dna 99.6 2.2E-16 4.7E-21 166.7 6.9 69 251-320 3-71 (380)
26 PRK14299 chaperone protein Dna 99.6 2.9E-16 6.2E-21 160.2 7.6 69 251-320 3-71 (291)
27 PRK10767 chaperone protein Dna 99.6 3.5E-16 7.6E-21 164.5 7.7 70 251-320 3-72 (371)
28 PRK14278 chaperone protein Dna 99.6 3.3E-16 7.2E-21 165.2 6.9 67 252-319 3-69 (378)
29 PRK14291 chaperone protein Dna 99.6 3.8E-16 8.2E-21 165.0 7.1 69 251-320 2-70 (382)
30 PRK14281 chaperone protein Dna 99.6 3.8E-16 8.3E-21 165.7 7.1 69 252-320 3-71 (397)
31 PRK14298 chaperone protein Dna 99.6 3.6E-16 7.8E-21 164.8 6.7 69 251-320 4-72 (377)
32 PRK14280 chaperone protein Dna 99.6 4.9E-16 1.1E-20 163.8 7.1 69 251-320 3-71 (376)
33 PRK14289 chaperone protein Dna 99.6 7.6E-16 1.7E-20 162.8 7.9 70 251-320 4-73 (386)
34 KOG0715|consensus 99.6 1.4E-15 3E-20 155.0 7.7 70 251-321 42-111 (288)
35 PRK14290 chaperone protein Dna 99.6 1.8E-15 3.8E-20 159.0 6.6 69 252-320 3-72 (365)
36 TIGR02349 DnaJ_bact chaperone 99.6 2.5E-15 5.5E-20 157.0 6.7 67 253-320 1-67 (354)
37 PTZ00341 Ring-infected erythro 99.6 4.1E-15 8.8E-20 167.7 7.7 71 250-321 571-641 (1136)
38 PRK14300 chaperone protein Dna 99.6 3.6E-15 7.8E-20 157.1 6.5 68 252-320 3-70 (372)
39 PRK10266 curved DNA-binding pr 99.6 5.4E-15 1.2E-19 151.9 7.5 67 252-319 4-70 (306)
40 KOG0719|consensus 99.6 3.6E-15 7.9E-20 145.1 5.8 73 249-321 11-85 (264)
41 PRK14292 chaperone protein Dna 99.6 4.3E-15 9.4E-20 156.3 6.8 68 252-320 2-69 (371)
42 PRK14293 chaperone protein Dna 99.5 6.1E-15 1.3E-19 155.4 6.8 68 252-320 3-70 (374)
43 smart00271 DnaJ DnaJ molecular 99.5 1.4E-14 3.1E-19 112.9 6.7 58 252-309 1-59 (60)
44 cd06257 DnaJ DnaJ domain or J- 99.5 2.9E-14 6.3E-19 109.1 6.8 55 253-307 1-55 (55)
45 COG5407 SEC63 Preprotein trans 99.5 3.6E-15 7.8E-20 155.9 2.2 151 164-318 3-169 (610)
46 KOG1150|consensus 99.5 1E-12 2.2E-17 125.5 16.6 91 249-341 50-141 (250)
47 COG2214 CbpA DnaJ-class molecu 99.5 6.4E-14 1.4E-18 132.2 7.2 68 251-318 5-73 (237)
48 PRK05014 hscB co-chaperone Hsc 99.4 5.8E-13 1.2E-17 126.4 11.4 70 252-321 1-77 (171)
49 PRK03578 hscB co-chaperone Hsc 99.4 1.5E-12 3.3E-17 124.0 11.3 71 251-321 5-82 (176)
50 TIGR03835 termin_org_DnaJ term 99.4 3E-13 6.6E-18 149.9 7.3 69 252-321 2-70 (871)
51 PRK00294 hscB co-chaperone Hsc 99.4 3.2E-12 7E-17 121.5 11.6 71 250-320 2-79 (173)
52 PRK01356 hscB co-chaperone Hsc 99.4 2.4E-12 5.3E-17 121.6 10.3 69 252-320 2-75 (166)
53 KOG0720|consensus 99.4 2.6E-12 5.6E-17 135.4 10.3 74 247-321 230-303 (490)
54 PHA03102 Small T antigen; Revi 99.3 5.3E-13 1.1E-17 124.3 4.3 64 253-320 6-71 (153)
55 KOG0722|consensus 99.3 5.8E-12 1.2E-16 124.2 5.7 74 248-322 29-102 (329)
56 KOG0624|consensus 99.2 1.1E-11 2.5E-16 127.1 5.3 71 247-317 389-462 (504)
57 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.2E-09 9.2E-14 114.5 25.2 76 409-488 274-351 (481)
58 TIGR01628 PABP-1234 polyadenyl 99.1 2E-10 4.3E-15 126.6 11.4 67 425-491 295-367 (562)
59 KOG0714|consensus 99.1 5.7E-11 1.2E-15 117.6 3.9 69 251-319 2-71 (306)
60 KOG0550|consensus 99.1 1.1E-10 2.3E-15 122.4 4.6 68 251-318 372-440 (486)
61 PTZ00100 DnaJ chaperone protei 99.0 2.1E-10 4.6E-15 102.2 4.9 52 251-306 64-115 (116)
62 PRK09430 djlA Dna-J like membr 99.0 4.6E-10 1E-14 113.6 6.0 56 252-307 200-262 (267)
63 PRK01773 hscB co-chaperone Hsc 99.0 5.5E-09 1.2E-13 99.5 11.3 68 252-319 2-76 (173)
64 TIGR00714 hscB Fe-S protein as 98.9 4.7E-09 1E-13 98.4 10.7 58 264-321 3-65 (157)
65 PHA02624 large T antigen; Prov 98.9 1.3E-09 2.9E-14 120.0 5.8 59 252-314 11-71 (647)
66 PF13893 RRM_5: RNA recognitio 98.8 9.2E-09 2E-13 79.1 6.0 54 432-485 1-56 (56)
67 PF13893 RRM_5: RNA recognitio 98.7 2.1E-08 4.5E-13 77.2 5.1 53 44-96 1-55 (56)
68 PLN03134 glycine-rich RNA-bind 98.7 1.1E-07 2.5E-12 87.8 9.8 66 425-490 44-116 (144)
69 KOG0122|consensus 98.6 5.9E-08 1.3E-12 95.7 7.1 76 409-489 188-270 (270)
70 KOG0130|consensus 98.6 4.7E-08 1E-12 88.9 5.7 76 426-501 83-168 (170)
71 COG5269 ZUO1 Ribosome-associat 98.6 2.2E-08 4.8E-13 99.9 3.9 76 242-317 33-113 (379)
72 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.5 1.9E-07 4.2E-12 96.3 8.1 67 425-491 279-352 (352)
73 KOG0144|consensus 98.5 1.9E-07 4.2E-12 98.1 5.7 68 426-493 135-211 (510)
74 TIGR01645 half-pint poly-U bin 98.3 8.8E-06 1.9E-10 90.9 14.3 75 409-488 106-187 (612)
75 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.3 1.8E-06 3.9E-11 89.1 7.7 65 425-489 13-84 (352)
76 KOG0144|consensus 98.2 1.6E-06 3.5E-11 91.3 6.6 68 425-492 44-121 (510)
77 PLN03120 nucleic acid binding 98.2 3.3E-06 7.1E-11 85.0 7.9 63 425-487 14-79 (260)
78 PF00076 RRM_1: RNA recognitio 98.2 1.9E-06 4.2E-11 67.5 5.0 47 425-471 8-58 (70)
79 TIGR01659 sex-lethal sex-letha 98.2 2.9E-06 6.3E-11 89.1 7.7 64 426-489 118-188 (346)
80 TIGR01659 sex-lethal sex-letha 98.1 9.6E-06 2.1E-10 85.2 8.8 66 425-490 203-277 (346)
81 smart00360 RRM RNA recognition 98.1 1.1E-05 2.3E-10 61.6 6.7 58 425-482 6-70 (71)
82 TIGR01645 half-pint poly-U bin 98.1 1.1E-05 2.3E-10 90.2 8.6 68 425-492 214-288 (612)
83 PLN03134 glycine-rich RNA-bind 98.0 8.8E-06 1.9E-10 75.3 6.4 63 38-100 45-114 (144)
84 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.0 1.2E-05 2.5E-10 87.9 8.0 63 425-488 12-78 (481)
85 KOG0114|consensus 98.0 1.9E-05 4.1E-10 69.3 7.4 64 425-488 28-95 (124)
86 smart00362 RRM_2 RNA recogniti 98.0 1.6E-05 3.5E-10 60.9 6.3 58 425-482 9-71 (72)
87 KOG0148|consensus 98.0 9.5E-06 2E-10 81.4 6.0 61 426-487 175-237 (321)
88 TIGR01628 PABP-1234 polyadenyl 97.9 1.7E-05 3.6E-10 87.8 7.6 64 425-488 10-80 (562)
89 TIGR01648 hnRNP-R-Q heterogene 97.9 2.7E-05 5.8E-10 86.8 8.8 63 425-490 243-309 (578)
90 KOG0146|consensus 97.9 1.2E-05 2.6E-10 80.5 5.5 69 427-495 31-108 (371)
91 KOG4206|consensus 97.9 1.9E-05 4E-10 77.5 6.6 63 426-488 20-90 (221)
92 cd00590 RRM RRM (RNA recogniti 97.9 4.3E-05 9.2E-10 58.9 7.5 60 425-484 9-74 (74)
93 PLN03121 nucleic acid binding 97.9 2.9E-05 6.2E-10 77.4 7.6 62 425-486 15-79 (243)
94 KOG1789|consensus 97.9 1.1E-05 2.5E-10 92.2 5.3 54 250-306 1279-1336(2235)
95 KOG0117|consensus 97.9 2.6E-05 5.6E-10 82.8 7.4 80 409-493 255-336 (506)
96 PF00076 RRM_1: RNA recognitio 97.9 2.1E-05 4.6E-10 61.5 5.2 49 38-86 9-61 (70)
97 TIGR01622 SF-CC1 splicing fact 97.9 3.2E-05 7E-10 83.0 8.1 65 425-489 196-267 (457)
98 PF14259 RRM_6: RNA recognitio 97.9 3E-05 6.5E-10 61.5 5.8 46 426-471 9-58 (70)
99 TIGR01622 SF-CC1 splicing fact 97.8 4.4E-05 9.5E-10 81.9 8.3 67 425-491 99-171 (457)
100 KOG0113|consensus 97.8 9.1E-05 2E-09 75.4 9.9 62 426-487 112-180 (335)
101 smart00361 RRM_1 RNA recogniti 97.8 4.5E-05 9.8E-10 61.6 5.6 54 429-482 2-69 (70)
102 KOG0107|consensus 97.8 4.9E-05 1.1E-09 72.2 6.5 66 425-490 20-87 (195)
103 smart00360 RRM RNA recognition 97.8 7.5E-05 1.6E-09 56.9 6.5 46 38-83 7-57 (71)
104 TIGR01642 U2AF_lg U2 snRNP aux 97.7 6.7E-05 1.4E-09 81.6 7.5 63 425-487 305-374 (509)
105 KOG0132|consensus 97.7 6.7E-05 1.4E-09 84.1 7.5 67 425-492 431-499 (894)
106 KOG4207|consensus 97.7 5.5E-05 1.2E-09 73.5 5.9 74 408-486 11-91 (256)
107 KOG0149|consensus 97.7 4.8E-05 1.1E-09 75.1 5.4 50 427-476 24-78 (247)
108 KOG0145|consensus 97.7 6.7E-05 1.4E-09 75.1 6.0 74 413-491 44-124 (360)
109 smart00362 RRM_2 RNA recogniti 97.7 0.00012 2.6E-09 56.1 6.2 45 38-82 10-57 (72)
110 KOG0121|consensus 97.7 8.5E-05 1.8E-09 67.5 5.9 61 427-487 48-115 (153)
111 KOG0568|consensus 97.7 5.2E-05 1.1E-09 74.7 4.8 55 252-307 47-102 (342)
112 PLN03213 repressor of silencin 97.6 8.4E-05 1.8E-09 79.7 6.7 64 425-488 20-88 (759)
113 PF15023 DUF4523: Protein of u 97.6 0.00014 3.1E-09 67.1 7.2 78 406-486 82-160 (166)
114 KOG0145|consensus 97.6 0.0001 2.2E-09 73.9 6.4 102 410-511 110-232 (360)
115 COG0724 RNA-binding proteins ( 97.6 0.00014 2.9E-09 69.2 7.1 63 425-487 125-194 (306)
116 PF14259 RRM_6: RNA recognitio 97.6 0.00013 2.8E-09 57.9 5.3 47 38-84 9-59 (70)
117 cd00590 RRM RRM (RNA recogniti 97.5 0.00034 7.5E-09 53.7 7.1 59 38-96 10-74 (74)
118 KOG0125|consensus 97.4 0.00019 4.2E-09 73.8 5.8 71 426-496 107-182 (376)
119 KOG0111|consensus 97.4 9E-05 2E-09 72.6 3.3 64 425-488 20-90 (298)
120 PLN03120 nucleic acid binding 97.4 0.00029 6.3E-09 71.2 6.7 61 38-98 15-78 (260)
121 KOG0127|consensus 97.4 0.00022 4.7E-09 77.5 6.1 61 429-489 131-197 (678)
122 KOG0105|consensus 97.4 0.00022 4.8E-09 68.4 5.3 66 423-488 14-83 (241)
123 KOG0153|consensus 97.4 0.00042 9E-09 71.9 7.5 61 426-487 239-302 (377)
124 TIGR01642 U2AF_lg U2 snRNP aux 97.3 0.00038 8.2E-09 75.7 6.7 57 430-486 434-500 (509)
125 KOG0415|consensus 97.2 0.0013 2.8E-08 68.4 8.7 61 426-486 250-317 (479)
126 TIGR01648 hnRNP-R-Q heterogene 97.2 0.00066 1.4E-08 75.9 7.0 61 425-485 68-135 (578)
127 PLN03121 nucleic acid binding 97.2 0.00082 1.8E-08 67.2 6.6 61 38-98 16-79 (243)
128 KOG0148|consensus 97.1 0.00058 1.3E-08 68.9 5.3 67 426-492 73-146 (321)
129 smart00361 RRM_1 RNA recogniti 97.1 0.0012 2.6E-08 53.2 5.5 47 41-87 2-60 (70)
130 KOG0108|consensus 97.0 0.0015 3.3E-08 70.6 7.2 68 425-492 28-102 (435)
131 KOG3192|consensus 96.9 0.006 1.3E-07 57.2 9.4 70 251-320 7-83 (168)
132 KOG0131|consensus 96.8 0.0015 3.3E-08 62.6 4.9 61 426-486 20-87 (203)
133 KOG0723|consensus 96.8 0.002 4.3E-08 56.7 5.1 54 251-308 55-108 (112)
134 KOG0124|consensus 96.8 0.0058 1.3E-07 64.0 8.9 58 427-484 125-189 (544)
135 KOG0107|consensus 96.7 0.0019 4.1E-08 61.6 4.4 61 38-98 21-83 (195)
136 KOG4206|consensus 96.7 0.003 6.4E-08 62.3 5.9 60 38-97 20-87 (221)
137 KOG0123|consensus 96.6 0.0043 9.4E-08 66.0 7.0 82 410-492 64-157 (369)
138 KOG0123|consensus 96.6 0.0043 9.3E-08 66.0 6.9 65 426-490 9-77 (369)
139 KOG1190|consensus 96.5 0.013 2.7E-07 62.3 9.3 75 411-488 297-373 (492)
140 KOG0147|consensus 96.5 0.0038 8.3E-08 68.1 5.5 62 425-486 288-356 (549)
141 KOG0130|consensus 96.4 0.0048 1E-07 56.8 5.0 60 39-98 84-150 (170)
142 KOG0127|consensus 96.4 0.0046 9.9E-08 67.6 5.6 68 425-492 302-382 (678)
143 KOG4207|consensus 96.4 0.0043 9.3E-08 60.7 4.7 49 39-87 25-78 (256)
144 KOG0153|consensus 96.3 0.016 3.4E-07 60.5 8.7 59 38-99 239-302 (377)
145 KOG0109|consensus 96.2 0.0086 1.9E-07 61.2 6.1 61 425-488 12-74 (346)
146 COG0724 RNA-binding proteins ( 96.1 0.014 3.1E-07 55.3 6.9 63 37-99 125-194 (306)
147 KOG0131|consensus 96.1 0.0075 1.6E-07 58.0 4.8 65 425-489 106-178 (203)
148 KOG0149|consensus 96.1 0.0075 1.6E-07 60.0 4.8 44 40-83 25-73 (247)
149 KOG0110|consensus 96.1 0.005 1.1E-07 69.0 4.0 74 410-488 613-693 (725)
150 KOG0122|consensus 96.1 0.012 2.6E-07 58.8 6.1 63 38-100 200-269 (270)
151 KOG0117|consensus 96.0 0.013 2.7E-07 62.9 6.3 59 425-483 93-159 (506)
152 KOG4208|consensus 95.9 0.015 3.2E-07 56.9 6.1 63 426-488 60-130 (214)
153 KOG0126|consensus 95.9 0.0012 2.7E-08 63.2 -1.6 62 425-486 45-113 (219)
154 KOG0113|consensus 95.8 0.016 3.5E-07 59.4 5.9 49 39-87 113-166 (335)
155 KOG1456|consensus 95.5 0.023 5E-07 59.8 5.9 63 426-488 133-199 (494)
156 KOG0110|consensus 95.5 0.036 7.8E-07 62.4 7.6 61 426-486 526-596 (725)
157 KOG0114|consensus 95.5 0.046 1E-06 48.4 6.7 63 38-100 29-95 (124)
158 PF15023 DUF4523: Protein of u 95.4 0.045 9.9E-07 50.9 6.7 77 19-98 83-160 (166)
159 KOG4661|consensus 95.3 0.027 5.8E-07 62.0 5.6 62 429-490 419-487 (940)
160 KOG0124|consensus 95.1 0.035 7.7E-07 58.3 5.5 66 426-491 221-293 (544)
161 KOG1456|consensus 95.0 0.082 1.8E-06 55.8 8.1 75 410-487 286-362 (494)
162 KOG0431|consensus 95.0 0.03 6.5E-07 61.2 5.0 46 259-304 395-447 (453)
163 KOG0121|consensus 94.9 0.061 1.3E-06 49.3 6.0 61 40-100 49-116 (153)
164 KOG4212|consensus 94.9 0.057 1.2E-06 57.9 6.7 62 427-488 56-124 (608)
165 PF14605 Nup35_RRM_2: Nup53/35 94.8 0.054 1.2E-06 41.9 4.7 40 429-469 14-53 (53)
166 COG1076 DjlA DnaJ-domain-conta 94.7 0.019 4E-07 54.8 2.2 61 245-305 106-173 (174)
167 COG1076 DjlA DnaJ-domain-conta 94.7 0.13 2.9E-06 49.0 8.0 67 253-319 2-75 (174)
168 KOG4205|consensus 94.3 0.033 7.1E-07 58.1 3.0 66 427-492 18-89 (311)
169 KOG0533|consensus 94.1 0.12 2.6E-06 52.1 6.6 66 425-490 93-164 (243)
170 KOG0132|consensus 94.0 0.093 2E-06 59.8 6.2 63 38-101 432-496 (894)
171 KOG4209|consensus 93.9 0.12 2.6E-06 51.7 6.2 75 412-488 100-180 (231)
172 KOG0146|consensus 93.8 0.12 2.5E-06 52.7 5.7 65 426-490 296-367 (371)
173 KOG4454|consensus 93.7 0.069 1.5E-06 52.9 3.8 63 425-487 19-86 (267)
174 PLN03213 repressor of silencin 93.4 0.14 2.9E-06 55.9 5.7 45 38-82 21-68 (759)
175 KOG0109|consensus 93.2 0.12 2.6E-06 53.2 4.7 60 427-489 90-151 (346)
176 KOG1029|consensus 93.1 0.63 1.4E-05 53.3 10.7 48 38-87 31-85 (1118)
177 KOG4660|consensus 93.1 0.094 2E-06 57.7 4.1 46 38-83 86-131 (549)
178 KOG0125|consensus 92.9 0.13 2.8E-06 53.6 4.7 58 21-83 95-155 (376)
179 KOG0151|consensus 92.9 0.36 7.9E-06 54.7 8.3 61 426-486 185-255 (877)
180 KOG0106|consensus 92.8 0.069 1.5E-06 52.9 2.5 59 426-487 12-72 (216)
181 KOG4660|consensus 92.7 0.11 2.5E-06 57.1 4.1 60 407-471 72-131 (549)
182 KOG0105|consensus 92.6 0.11 2.3E-06 50.4 3.3 60 37-96 16-79 (241)
183 PF14605 Nup35_RRM_2: Nup53/35 92.4 0.25 5.5E-06 38.1 4.6 43 38-81 8-53 (53)
184 COG5175 MOT2 Transcriptional r 92.2 0.69 1.5E-05 48.5 8.8 52 433-484 138-199 (480)
185 KOG0108|consensus 92.2 0.86 1.9E-05 49.7 10.0 65 37-101 28-99 (435)
186 KOG0116|consensus 91.7 0.22 4.8E-06 53.9 4.8 63 425-487 298-366 (419)
187 KOG1190|consensus 91.7 0.27 5.9E-06 52.6 5.3 59 38-96 309-369 (492)
188 KOG1855|consensus 91.3 0.16 3.6E-06 54.4 3.3 45 426-470 242-304 (484)
189 KOG0147|consensus 91.0 0.38 8.2E-06 53.1 5.7 59 427-486 466-526 (549)
190 KOG4205|consensus 90.8 0.27 5.9E-06 51.3 4.3 68 425-492 107-180 (311)
191 PF08777 RRM_3: RNA binding mo 90.7 0.38 8.2E-06 42.4 4.5 45 426-471 12-56 (105)
192 KOG2314|consensus 90.7 0.33 7.1E-06 53.8 4.9 47 41-87 78-128 (698)
193 KOG1855|consensus 88.9 0.26 5.6E-06 53.0 2.3 60 39-98 243-322 (484)
194 KOG0106|consensus 88.6 0.26 5.6E-06 48.9 2.0 58 426-486 110-169 (216)
195 KOG0533|consensus 88.6 1.1 2.3E-05 45.4 6.4 65 38-102 94-164 (243)
196 KOG0415|consensus 87.5 0.48 1E-05 49.9 3.3 53 27-81 241-298 (479)
197 KOG2135|consensus 87.2 0.52 1.1E-05 51.3 3.4 79 410-493 372-451 (526)
198 KOG4208|consensus 86.9 1.1 2.3E-05 44.3 5.0 64 37-100 59-130 (214)
199 KOG0111|consensus 86.7 0.71 1.5E-05 46.0 3.8 65 39-103 22-93 (298)
200 KOG4211|consensus 85.8 2.5 5.5E-05 46.4 7.7 58 427-485 22-83 (510)
201 PF11608 Limkain-b1: Limkain b 84.6 2.9 6.4E-05 35.9 5.9 54 429-487 20-76 (90)
202 KOG0126|consensus 84.5 0.11 2.3E-06 50.3 -3.0 62 26-87 25-100 (219)
203 KOG4212|consensus 83.9 1.9 4.1E-05 46.8 5.5 70 411-485 537-608 (608)
204 KOG2314|consensus 83.1 1.7 3.6E-05 48.5 4.9 55 429-483 78-139 (698)
205 PF05172 Nup35_RRM: Nup53/35/4 82.7 2.7 5.9E-05 36.9 5.2 59 428-486 18-90 (100)
206 PF03656 Pam16: Pam16; InterP 81.9 2.7 5.9E-05 38.5 5.1 49 253-305 59-107 (127)
207 KOG2202|consensus 81.3 1.1 2.3E-05 45.5 2.4 56 429-484 83-144 (260)
208 KOG0120|consensus 81.3 3.3 7.1E-05 46.0 6.4 57 430-486 424-490 (500)
209 KOG1548|consensus 80.3 3.2 6.9E-05 43.9 5.6 77 406-483 261-347 (382)
210 PF08952 DUF1866: Domain of un 79.8 5.6 0.00012 37.3 6.5 79 406-487 23-111 (146)
211 KOG1029|consensus 79.6 25 0.00054 41.0 12.6 38 39-88 10-47 (1118)
212 KOG4211|consensus 79.6 2.6 5.6E-05 46.3 4.8 51 40-91 23-76 (510)
213 KOG1457|consensus 79.1 7.8 0.00017 39.0 7.5 69 425-493 44-123 (284)
214 KOG0163|consensus 78.7 35 0.00077 39.8 13.3 11 69-79 507-517 (1259)
215 PF08777 RRM_3: RNA binding mo 75.5 4.5 9.7E-05 35.6 4.4 45 38-83 12-56 (105)
216 KOG4454|consensus 74.4 3.6 7.9E-05 41.1 3.8 64 37-100 19-87 (267)
217 KOG0116|consensus 73.0 3.9 8.6E-05 44.5 4.1 46 38-83 299-349 (419)
218 KOG1548|consensus 72.6 7.4 0.00016 41.2 5.8 55 42-104 291-346 (382)
219 PTZ00266 NIMA-related protein 70.9 30 0.00065 41.9 11.0 7 496-502 652-658 (1021)
220 PF05172 Nup35_RRM: Nup53/35/4 70.5 9.2 0.0002 33.6 5.1 47 41-88 19-77 (100)
221 KOG1457|consensus 70.2 7.6 0.00016 39.0 5.0 46 425-471 220-267 (284)
222 KOG2135|consensus 69.8 3.1 6.7E-05 45.5 2.4 66 37-103 383-449 (526)
223 PF04847 Calcipressin: Calcipr 69.7 6.7 0.00014 38.1 4.5 59 428-487 8-70 (184)
224 KOG2891|consensus 69.6 3.3 7.2E-05 42.6 2.4 38 22-59 154-193 (445)
225 KOG0226|consensus 69.6 4.6 0.0001 41.1 3.4 72 411-482 180-264 (290)
226 KOG0128|consensus 69.2 2.8 6E-05 48.8 2.0 59 426-484 747-811 (881)
227 KOG4210|consensus 67.3 4.3 9.4E-05 41.9 2.8 67 425-491 195-267 (285)
228 PF10309 DUF2414: Protein of u 66.9 17 0.00038 29.3 5.6 43 425-470 14-60 (62)
229 PF08675 RNA_bind: RNA binding 66.8 11 0.00025 32.2 4.7 42 427-471 20-61 (87)
230 KOG0724|consensus 66.7 6.1 0.00013 41.2 3.8 56 263-318 3-62 (335)
231 KOG0120|consensus 65.0 6.3 0.00014 43.8 3.6 63 425-487 299-368 (500)
232 PF04059 RRM_2: RNA recognitio 63.9 25 0.00054 30.7 6.5 62 426-487 12-86 (97)
233 PF04847 Calcipressin: Calcipr 63.8 13 0.00028 36.2 5.1 43 40-83 8-50 (184)
234 KOG0163|consensus 63.1 59 0.0013 38.2 10.7 12 123-134 671-682 (1259)
235 PF13446 RPT: A repeated domai 62.8 13 0.00029 29.2 4.2 26 253-278 6-31 (62)
236 KOG2202|consensus 62.6 4.1 8.9E-05 41.4 1.5 43 41-83 83-129 (260)
237 KOG2068|consensus 62.5 7.3 0.00016 41.0 3.4 56 415-471 79-144 (327)
238 PF06936 Selenoprotein_S: Sele 59.1 58 0.0013 31.9 8.7 25 326-350 80-104 (190)
239 KOG4574|consensus 58.0 8.7 0.00019 44.9 3.2 65 425-490 308-376 (1007)
240 KOG0112|consensus 55.6 16 0.00034 43.1 4.8 65 426-491 465-534 (975)
241 KOG0115|consensus 53.5 14 0.0003 37.7 3.5 63 409-471 20-91 (275)
242 KOG1995|consensus 52.4 16 0.00034 38.9 3.8 75 411-489 66-155 (351)
243 PRK00409 recombination and DNA 49.8 2.7E+02 0.0059 32.9 13.8 14 296-309 502-515 (782)
244 PF11833 DUF3353: Protein of u 49.3 33 0.00073 33.6 5.4 37 261-305 1-37 (194)
245 KOG4209|consensus 48.2 26 0.00057 35.2 4.6 70 27-98 103-178 (231)
246 KOG4661|consensus 47.6 1.4E+02 0.003 34.0 10.2 42 41-82 419-465 (940)
247 TIGR01069 mutS2 MutS2 family p 47.1 3.1E+02 0.0067 32.5 13.7 13 296-308 497-509 (771)
248 KOG4285|consensus 46.4 37 0.0008 35.6 5.3 43 428-471 209-251 (350)
249 KOG3654|consensus 46.1 65 0.0014 36.0 7.3 10 503-512 561-570 (708)
250 COG5175 MOT2 Transcriptional r 45.4 28 0.0006 37.0 4.3 44 44-87 137-188 (480)
251 KOG4574|consensus 45.2 58 0.0013 38.5 7.1 100 38-138 309-424 (1007)
252 KOG2412|consensus 45.0 2.5E+02 0.0054 31.9 11.6 50 132-184 11-61 (591)
253 KOG1996|consensus 44.6 38 0.00081 35.5 5.0 43 429-471 300-348 (378)
254 PF08675 RNA_bind: RNA binding 42.7 41 0.00089 28.9 4.2 50 41-95 22-71 (87)
255 KOG0691|consensus 42.3 4.9 0.00011 41.9 -1.7 78 22-99 156-243 (296)
256 PF15236 CCDC66: Coiled-coil d 41.8 3.2E+02 0.0069 26.1 11.1 6 305-310 40-45 (157)
257 PF14687 DUF4460: Domain of un 40.9 59 0.0013 29.1 5.2 46 262-307 4-53 (112)
258 PTZ00121 MAEBL; Provisional 40.5 5.7E+02 0.012 32.8 14.3 15 19-33 612-626 (2084)
259 PF11608 Limkain-b1: Limkain b 40.1 60 0.0013 28.1 4.8 50 42-97 21-74 (90)
260 PTZ00121 MAEBL; Provisional 39.7 2.3E+02 0.0049 36.0 11.0 31 38-68 691-724 (2084)
261 PF10567 Nab6_mRNP_bdg: RNA-re 38.6 99 0.0021 32.4 7.0 61 426-486 26-106 (309)
262 KOG4676|consensus 36.8 29 0.00064 37.5 3.0 61 426-486 18-87 (479)
263 PF08952 DUF1866: Domain of un 35.9 57 0.0012 30.7 4.4 79 12-95 17-102 (146)
264 PF11767 SET_assoc: Histone ly 35.7 1E+02 0.0022 25.1 5.3 44 426-473 11-54 (66)
265 PLN03086 PRLI-interacting fact 34.6 1.8E+02 0.0039 33.2 8.8 10 454-463 141-150 (567)
266 COG4942 Membrane-bound metallo 34.5 6.7E+02 0.015 27.7 14.4 18 366-383 235-252 (420)
267 KOG3054|consensus 33.8 3.8E+02 0.0083 27.6 10.0 30 439-470 241-270 (299)
268 TIGR01069 mutS2 MutS2 family p 33.3 4.9E+02 0.011 30.8 12.5 9 452-460 648-656 (771)
269 KOG2412|consensus 31.1 4.1E+02 0.0089 30.2 10.6 9 428-436 353-361 (591)
270 KOG2891|consensus 30.3 6.6E+02 0.014 26.4 11.2 18 41-61 52-69 (445)
271 PF05262 Borrelia_P83: Borreli 30.1 3.2E+02 0.0069 30.7 9.7 25 165-189 95-120 (489)
272 PRK00409 recombination and DNA 29.9 5.6E+02 0.012 30.4 12.3 9 452-460 660-668 (782)
273 PF03468 XS: XS domain; Inter 29.2 52 0.0011 29.6 2.9 37 38-74 28-66 (116)
274 KOG4364|consensus 28.7 3E+02 0.0065 32.1 9.2 13 166-178 74-86 (811)
275 PF03468 XS: XS domain; Inter 28.5 56 0.0012 29.4 3.0 44 426-469 28-74 (116)
276 PF10168 Nup88: Nuclear pore c 27.6 1E+03 0.022 28.0 13.7 20 289-308 532-551 (717)
277 PF07946 DUF1682: Protein of u 26.8 1.5E+02 0.0034 31.0 6.4 14 42-55 41-54 (321)
278 TIGR00570 cdk7 CDK-activating 26.7 7.8E+02 0.017 26.0 12.0 12 459-470 287-298 (309)
279 KOG2416|consensus 26.5 77 0.0017 36.1 4.2 74 407-486 441-520 (718)
280 PF04111 APG6: Autophagy prote 26.4 4.5E+02 0.0097 27.6 9.7 9 439-447 150-158 (314)
281 CHL00185 ycf59 magnesium-proto 26.0 55 0.0012 34.7 2.8 74 233-306 228-305 (351)
282 KOG2002|consensus 26.0 1.3E+03 0.028 28.3 14.5 10 291-300 788-797 (1018)
283 PF04430 DUF498: Protein of un 25.7 1.1E+02 0.0024 26.8 4.3 51 27-79 29-94 (110)
284 KOG3152|consensus 25.6 38 0.00083 34.7 1.5 45 426-470 85-146 (278)
285 KOG4364|consensus 24.9 6E+02 0.013 29.8 10.7 24 253-276 232-255 (811)
286 PRK14474 F0F1 ATP synthase sub 24.3 7.5E+02 0.016 25.0 13.1 20 366-385 94-113 (250)
287 PF04889 Cwf_Cwc_15: Cwf15/Cwc 24.3 1.9E+02 0.004 29.5 6.2 61 360-420 144-207 (244)
288 KOG4307|consensus 23.9 74 0.0016 37.0 3.5 81 431-511 18-107 (944)
289 CHL00118 atpG ATP synthase CF0 23.7 5.9E+02 0.013 23.6 12.8 20 368-387 113-132 (156)
290 KOG2072|consensus 23.2 8.2E+02 0.018 29.5 11.5 26 25-53 282-307 (988)
291 PF15513 DUF4651: Domain of un 22.7 1.3E+02 0.0027 24.5 3.6 19 430-448 9-27 (62)
292 KOG0129|consensus 22.4 1.4E+02 0.003 33.5 5.1 45 426-471 270-325 (520)
293 PF02617 ClpS: ATP-dependent C 22.1 89 0.0019 25.9 2.9 34 62-95 45-81 (82)
294 cd01047 ACSF Aerobic Cyclase S 21.9 94 0.002 32.7 3.5 73 233-305 212-288 (323)
295 KOG2002|consensus 21.8 8.1E+02 0.017 30.0 11.3 7 253-259 714-720 (1018)
296 PRK13654 magnesium-protoporphy 21.7 75 0.0016 33.8 2.8 73 233-305 232-308 (355)
297 KOG0151|consensus 21.7 1.1E+02 0.0024 35.6 4.3 60 39-98 186-255 (877)
298 COG5552 Uncharacterized conser 21.3 3.5E+02 0.0075 22.9 6.0 34 252-285 3-40 (88)
299 TIGR02029 AcsF magnesium-proto 20.8 85 0.0018 33.2 3.0 73 233-305 222-298 (337)
300 PF10384 Scm3: Centromere prot 20.7 98 0.0021 24.7 2.7 13 42-54 16-28 (58)
301 KOG0128|consensus 20.6 51 0.0011 38.8 1.5 44 39-82 748-795 (881)
302 KOG3564|consensus 20.6 1.3E+03 0.027 26.3 12.3 81 291-376 8-88 (604)
303 KOG4285|consensus 20.4 1.4E+02 0.003 31.5 4.4 44 41-87 210-254 (350)
No 1
>KOG0721|consensus
Probab=99.91 E-value=1.1e-25 Score=216.09 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=127.0
Q ss_pred CCcccccCCCceeeecccccc-ccccccccccccCCCCCCCCCCCCCCCCCCcccccccc------cCCCCCCccccccc
Q psy3926 164 NLFPTADKSSHLFPIADKSSN-LFPSADKSSNIFSSSSKPRNVFPSGLFPSANVSSNIFA------SSDRTLPEPHISWS 236 (512)
Q Consensus 164 ~~f~~~~s~~~f~~~~~~~~~-ll~~~t~~~~p~~~~~~~r~~~~~~~~p~~~~~~~~~~------~s~~~~~~~~~~w~ 236 (512)
.-|+|||+|+||+||+.++.+ ++.|.|++.+|+... +......|.|..|..+++.+. .+.++.+.++++|.
T Consensus 3 ~~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~--~~~~~~~c~c~~c~~~r~~~~~~~~k~~~~~~~i~lv~~W~ 80 (230)
T KOG0721|consen 3 QDYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPE--PPKRKEECQCHGCDKKRRKKAKVSPKSISTKRKVFLVVGWA 80 (230)
T ss_pred cccccccccCccHHHHHHHHHHHHHHHHHHHhccccc--hhhhhhHHhhhhhhhhhhhhcccCcccchhHHHHHHHHHHH
Confidence 359999999999999999999 999999999995222 222334577877766555333 12355677789999
Q ss_pred cccchhhh---hcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhH
Q psy3926 237 FPAIPLSS---IMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAA 313 (512)
Q Consensus 237 ~~~~~~~~---~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~ 313 (512)
+..+++.. ...+....|||+||||+++++..|||+|||+|+++|||||++...+.++.|..|.+||+.|+|+..|.+
T Consensus 81 v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN 160 (230)
T KOG0721|consen 81 VIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSREN 160 (230)
T ss_pred HHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHH
Confidence 99888544 456667899999999999999999999999999999999998645677899999999999999999999
Q ss_pred HHHHHHH
Q psy3926 314 YDSVIRR 320 (512)
Q Consensus 314 YD~~~~~ 320 (512)
|..+++.
T Consensus 161 ~ekYG~P 167 (230)
T KOG0721|consen 161 WEKYGNP 167 (230)
T ss_pred HHHhCCC
Confidence 9999764
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.7e-22 Score=204.91 Aligned_cols=74 Identities=45% Similarity=0.636 Sum_probs=70.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 323 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~ 323 (512)
...|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+++.+..+
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 35799999999999999999999999999999999998899999999999999999999999999999987543
No 3
>KOG0691|consensus
Probab=99.84 E-value=3.5e-21 Score=195.47 Aligned_cols=104 Identities=45% Similarity=0.646 Sum_probs=98.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHHHHHhHh
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSK 330 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~~~r~~~ 330 (512)
..|||.||||+.+|+..+|++|||..+++|||||||+||.|.+.|+.|.+||+||+|+.+|..||.++........+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~ 83 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ 83 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3926 331 LDATRKKFKEDLERREKEAENERY 354 (512)
Q Consensus 331 ~~~~rrk~~eeLe~rE~e~~~~~~ 354 (512)
.+..++.+..++++++..+.....
T Consensus 84 ~~~~r~~f~~dl~~~~~~~~a~~~ 107 (296)
T KOG0691|consen 84 ADGFRKKFGSDLFERERGALALLK 107 (296)
T ss_pred HHHHHHHhhhhhhhhHHHHHhHHh
Confidence 999999999999999998876654
No 4
>KOG0713|consensus
Probab=99.84 E-value=1.9e-21 Score=197.72 Aligned_cols=80 Identities=43% Similarity=0.590 Sum_probs=72.9
Q ss_pred hhcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHH
Q psy3926 244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 323 (512)
Q Consensus 244 ~~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~ 323 (512)
+.......+|||+||||+++|+..|||+|||+||++|||||||++|.|.+.|+.|+.||+||+||++|+.||.+|.....
T Consensus 8 ~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 8 GAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 33334457899999999999999999999999999999999999999999999999999999999999999999966543
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2e-18 Score=181.46 Aligned_cols=70 Identities=41% Similarity=0.684 Sum_probs=66.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
+.|||+||||+++||.+|||+|||+||++||||+|+++++|.++|+.|++||+||+||.+|+.||+++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999999864
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=8.2e-18 Score=178.08 Aligned_cols=69 Identities=42% Similarity=0.631 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
..|||+||||+++|+.+|||+|||+||++||||+|+++++|.++|+.|++||+||+||++|+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 469999999999999999999999999999999998888899999999999999999999999999975
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1e-17 Score=176.23 Aligned_cols=69 Identities=39% Similarity=0.555 Sum_probs=65.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 469999999999999999999999999999999997 478999999999999999999999999998864
No 8
>KOG0712|consensus
Probab=99.70 E-value=1.7e-17 Score=170.66 Aligned_cols=69 Identities=48% Similarity=0.678 Sum_probs=64.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 322 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~ 322 (512)
+..||+||||+++||.+|||+|||+||++|||||||+ |.++|++|..||+||+||++|..||+++....
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 5689999999999999999999999999999999985 78999999999999999999999999996543
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.9e-17 Score=174.22 Aligned_cols=70 Identities=37% Similarity=0.615 Sum_probs=66.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 4699999999999999999999999999999999987788999999999999999999999999998864
No 10
>KOG0716|consensus
Probab=99.68 E-value=4.7e-17 Score=161.43 Aligned_cols=74 Identities=38% Similarity=0.592 Sum_probs=69.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEV 324 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~ 324 (512)
.+|+|+||||+++|+.++|||+||+|+++||||+++++|++.++|+.|+.||+||+||.+|..||.++......
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999998765433
No 11
>KOG0717|consensus
Probab=99.68 E-value=1e-15 Score=160.71 Aligned_cols=69 Identities=42% Similarity=0.643 Sum_probs=64.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
.++||+||||.++|+..+||++||+|||+|||||||+. .+|.++|+.|+.||+|||||..|+.||.+..
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 46999999999999999999999999999999998865 5789999999999999999999999998744
No 12
>KOG0718|consensus
Probab=99.67 E-value=5.7e-17 Score=170.08 Aligned_cols=75 Identities=37% Similarity=0.626 Sum_probs=68.0
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926 248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 322 (512)
Q Consensus 248 ~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~---~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~ 322 (512)
++.+.|||.+|||+++||.+||++|||++++.|||||..+. ..|++.|+.|..|||||+||.+|+.||.+|....
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 55677999999999999999999999999999999998642 2488999999999999999999999999997654
No 13
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.1e-16 Score=168.22 Aligned_cols=70 Identities=44% Similarity=0.663 Sum_probs=66.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+++++++|.++|..|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999999864
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.6e-17 Score=168.71 Aligned_cols=70 Identities=31% Similarity=0.572 Sum_probs=65.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++||.+|||+|||+||++||||+|+++ +.|.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 46999999999999999999999999999999999864 67889999999999999999999999998754
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=8.8e-17 Score=168.81 Aligned_cols=69 Identities=42% Similarity=0.631 Sum_probs=66.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++||.+|||+|||+|+++||||+|++++.|.++|++|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 599999999999999999999999999999999988888999999999999999999999999998764
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1e-16 Score=169.61 Aligned_cols=66 Identities=42% Similarity=0.649 Sum_probs=63.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDS 316 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~ 316 (512)
..|||+||||+++|+.+|||+|||+||++||||++++++.|.++|+.|++||++|+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 569999999999999999999999999999999998778899999999999999999999999998
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.3e-16 Score=168.80 Aligned_cols=70 Identities=39% Similarity=0.621 Sum_probs=66.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||++++++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998854
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.66 E-value=1.6e-16 Score=125.86 Aligned_cols=63 Identities=40% Similarity=0.669 Sum_probs=59.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhhHHH
Q psy3926 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARAAYD 315 (512)
Q Consensus 253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~~YD 315 (512)
|||+||||+++++.++|+++|+++++.+|||+++++. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987655 58899999999999999999999998
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.4e-16 Score=168.17 Aligned_cols=70 Identities=39% Similarity=0.589 Sum_probs=66.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.++||+|||+||++||||+++++++|+++|+.|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 3599999999999999999999999999999999987788999999999999999999999999998754
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.5e-16 Score=167.61 Aligned_cols=70 Identities=43% Similarity=0.655 Sum_probs=66.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.++||+|||+||++||||+++++++|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998854
No 21
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.7e-16 Score=166.95 Aligned_cols=69 Identities=32% Similarity=0.478 Sum_probs=64.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+|+ +++|.++|+.|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 359999999999999999999999999999999997 478889999999999999999999999998853
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.7e-16 Score=167.42 Aligned_cols=69 Identities=35% Similarity=0.518 Sum_probs=65.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+|++ +.|.++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 5699999999999999999999999999999999984 78999999999999999999999999998854
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.1e-16 Score=167.41 Aligned_cols=69 Identities=42% Similarity=0.660 Sum_probs=65.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++|+.+|||+|||+||++||||+|++++.|.++|+.|++||++|+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 389999999999999999999999999999999998888999999999999999999999999999864
No 24
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.64 E-value=2e-16 Score=168.76 Aligned_cols=66 Identities=44% Similarity=0.687 Sum_probs=61.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||++|+||.+|+.||.++..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 5699999999999999999999999999999999863 37999999999999999999999998864
No 25
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.2e-16 Score=166.68 Aligned_cols=69 Identities=36% Similarity=0.519 Sum_probs=64.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|+.|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 469999999999999999999999999999999998 477899999999999999999999999998753
No 26
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.9e-16 Score=160.23 Aligned_cols=69 Identities=33% Similarity=0.479 Sum_probs=65.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++||.+|||+|||+||++||||+++ ++.+.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 469999999999999999999999999999999997 578899999999999999999999999998754
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.5e-16 Score=164.55 Aligned_cols=70 Identities=46% Similarity=0.684 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+|++++.|.++|..|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998753
No 28
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.3e-16 Score=165.15 Aligned_cols=67 Identities=43% Similarity=0.578 Sum_probs=64.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
.|||+||||+++|+.+|||+|||+||++||||+|+ +++|.++|+.|++||++|+||.+|+.||+++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 59999999999999999999999999999999998 57899999999999999999999999999875
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.8e-16 Score=164.95 Aligned_cols=69 Identities=33% Similarity=0.535 Sum_probs=65.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.++||+|||+||++||||+|++ +.|.++|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 3599999999999999999999999999999999984 77889999999999999999999999998864
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.8e-16 Score=165.67 Aligned_cols=69 Identities=42% Similarity=0.651 Sum_probs=66.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++|+.+|||+|||+||++||||++++++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 599999999999999999999999999999999987788899999999999999999999999998864
No 31
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.6e-16 Score=164.84 Aligned_cols=69 Identities=45% Similarity=0.624 Sum_probs=64.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+|+ ++.|.++|+.|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 359999999999999999999999999999999997 477889999999999999999999999998853
No 32
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.9e-16 Score=163.76 Aligned_cols=69 Identities=39% Similarity=0.556 Sum_probs=64.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||++++ +.|.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 3599999999999999999999999999999999974 67899999999999999999999999998753
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.6e-16 Score=162.80 Aligned_cols=70 Identities=40% Similarity=0.634 Sum_probs=66.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.+|||+|||+||++||||+++++++|.++|+.|++||++|+||.+|+.||.++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4699999999999999999999999999999999998888999999999999999999999999998764
No 34
>KOG0715|consensus
Probab=99.59 E-value=1.4e-15 Score=155.04 Aligned_cols=70 Identities=37% Similarity=0.536 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
..|||+||||+++|+..|||+||++||++||||.|.+ .+|.+.|++|.+||++|+|+++|..||..+...
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999999999999999999999999999985 589999999999999999999999999998764
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.8e-15 Score=158.97 Aligned_cols=69 Identities=39% Similarity=0.574 Sum_probs=64.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++|+.+|||+|||+|+++||||++++++ .|.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 59999999999999999999999999999999998664 7889999999999999999999999998753
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.57 E-value=2.5e-15 Score=157.04 Aligned_cols=67 Identities=46% Similarity=0.678 Sum_probs=63.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
|||+||||+++|+.++||+|||+||++||||+++ ++.+.++|+.|++||++|+|+.+|..||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999997 567889999999999999999999999998754
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.56 E-value=4.1e-15 Score=167.71 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=66.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
.+.+||+||||+++||..+||+|||+||++||||+++++ .|.+.|+.|.+||+||+||.+|+.||.+|...
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 467999999999999999999999999999999999874 68899999999999999999999999987654
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.6e-15 Score=157.05 Aligned_cols=68 Identities=35% Similarity=0.519 Sum_probs=64.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++||.+|||+|||+|+++||||+++ ++.+.++|..|++||++|+|+.+|+.||.++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 59999999999999999999999999999999997 467889999999999999999999999998753
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.55 E-value=5.4e-15 Score=151.90 Aligned_cols=67 Identities=33% Similarity=0.507 Sum_probs=63.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
.|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|..|++||++|+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 59999999999999999999999999999999987 46789999999999999999999999999873
No 40
>KOG0719|consensus
Probab=99.55 E-value=3.6e-15 Score=145.13 Aligned_cols=73 Identities=41% Similarity=0.630 Sum_probs=66.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNP--DDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 249 ~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~--~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
....|+|+||||.++|+..+|++||++|+++||||+++ +..+|.+.|++|+.||+||+|.++|+.||..|...
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34569999999999999999999999999999999994 34578899999999999999999999999987654
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.3e-15 Score=156.31 Aligned_cols=68 Identities=44% Similarity=0.643 Sum_probs=64.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
+|||+||||+++|+.++||+|||+|+++||||+++ ++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 49999999999999999999999999999999997 578899999999999999999999999998753
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=6.1e-15 Score=155.42 Aligned_cols=68 Identities=35% Similarity=0.569 Sum_probs=64.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++|+.++||+|||+|+++||||+++ ++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 59999999999999999999999999999999997 467889999999999999999999999998753
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.53 E-value=1.4e-14 Score=112.92 Aligned_cols=58 Identities=47% Similarity=0.689 Sum_probs=54.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHccChh
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD-DKKAIETFHLLSKAIEVLLDKS 309 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~-~~~a~~~F~~I~~AYevLsDp~ 309 (512)
.|||+||||+++++.++|+++|+++++.||||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 389999999999999999999999999999999986 5678899999999999999985
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.51 E-value=2.9e-14 Score=109.14 Aligned_cols=55 Identities=53% Similarity=0.822 Sum_probs=51.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccC
Q psy3926 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307 (512)
Q Consensus 253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsD 307 (512)
|||+||||+++++.++|+++||+|+++||||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999997546788999999999999987
No 45
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.51 E-value=3.6e-15 Score=155.92 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=110.5
Q ss_pred CCcccccCCCceeeecccccc-ccccccccccccCCCCCCCCCCCCCCCCCCccc------ccccccCCCCCCccccccc
Q psy3926 164 NLFPTADKSSHLFPIADKSSN-LFPSADKSSNIFSSSSKPRNVFPSGLFPSANVS------SNIFASSDRTLPEPHISWS 236 (512)
Q Consensus 164 ~~f~~~~s~~~f~~~~~~~~~-ll~~~t~~~~p~~~~~~~r~~~~~~~~p~~~~~------~~~~~~s~~~~~~~~~~w~ 236 (512)
.-|.|||+|-++-||+.+... ...|-|| .....++.+-....-+|.|..|... ..+| .++.+..++||.
T Consensus 3 ~~YeYDE~g~~~p~fvL~gl~~vvlpmTY-~~i~gpsaSKe~~~vr~~~q~~Rpkdknv~rKSIf---~lR~If~ivgWl 78 (610)
T COG5407 3 YDYEYDESGLASPYFVLSGLVPVVLPMTY-DLIEGPSASKELRRVRCACQGCRPKDKNVSRKSIF---KLRKIFTIVGWL 78 (610)
T ss_pred cccccccccccchHHHHhhhhheeeeeeh-hheeCCcccchhhcchhhhhhcCccccchhhhHHH---hhhHHHHHHHHH
Confidence 348999999999887776665 5555554 3333321111111223445554321 1133 457788899999
Q ss_pred cccchhhhhc----ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHHHHHHHHHccC
Q psy3926 237 FPAIPLSSIM----ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-----KKAIETFHLLSKAIEVLLD 307 (512)
Q Consensus 237 ~~~~~~~~~~----~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-----~~a~~~F~~I~~AYevLsD 307 (512)
...++++.+. ......|||+||||+.+++..+||++||+|+.+|||||.+.- .+-++.+.+|++||..|+|
T Consensus 79 ~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd 158 (610)
T COG5407 79 VISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158 (610)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh
Confidence 9988865543 244578999999999999999999999999999999998751 3567899999999999999
Q ss_pred hhhhhHHHHHH
Q psy3926 308 KSARAAYDSVI 318 (512)
Q Consensus 308 p~~R~~YD~~~ 318 (512)
...|.+|-.+|
T Consensus 159 ~k~renyl~yG 169 (610)
T COG5407 159 KKRRENYLNYG 169 (610)
T ss_pred HHHHHHHHhcC
Confidence 99999998884
No 46
>KOG1150|consensus
Probab=99.49 E-value=1e-12 Score=125.50 Aligned_cols=91 Identities=27% Similarity=0.516 Sum_probs=74.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHHHHH
Q psy3926 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIR 327 (512)
Q Consensus 249 ~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~~~r 327 (512)
+-++|+|+||.|.++.+.++||+.||+|++..|||||+++ +.|..+|..+.+||.+|-|+..|...+....+...+ -
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y~~ak~~--~ 127 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVYTAAKNR--L 127 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--H
Confidence 3477999999999999999999999999999999999998 679999999999999999999888777665543322 2
Q ss_pred hHhHHHHHHHHHHH
Q psy3926 328 NSKLDATRKKFKED 341 (512)
Q Consensus 328 ~~~~~~~rrk~~ee 341 (512)
...|.+++++++.+
T Consensus 128 ~~~~~ekkkklkKe 141 (250)
T KOG1150|consen 128 EKVMSEKKKKLKKE 141 (250)
T ss_pred HHHHHHHHHHHHhc
Confidence 34455666666553
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.4e-14 Score=132.24 Aligned_cols=68 Identities=46% Similarity=0.689 Sum_probs=64.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK-AIETFHLLSKAIEVLLDKSARAAYDSVI 318 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~-a~~~F~~I~~AYevLsDp~~R~~YD~~~ 318 (512)
..|||+||||+++|+..+|++|||+++++||||++++++. +.+.|..|++||++|+|+..|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4599999999999999999999999999999999998885 9999999999999999999999999975
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=5.8e-13 Score=126.40 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=61.2
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
.|||+||||++. ++..+|+++||+|+++||||+..+.+. +.+.|..|++||++|+||.+|+.|+..+.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 389999999996 788999999999999999999765432 5678999999999999999999999876643
No 49
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=1.5e-12 Score=124.04 Aligned_cols=71 Identities=25% Similarity=0.312 Sum_probs=61.2
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHH-----HHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 251 DLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKKA-----IETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 251 ~~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~a-----~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
..|||+||||++. ++..+|+++||+|+++||||++++.+.+ .+.+..|++||++|+||.+|+.|+..+.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 3699999999996 6899999999999999999998765543 345689999999999999999999876543
No 50
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.40 E-value=3e-13 Score=149.92 Aligned_cols=69 Identities=36% Similarity=0.522 Sum_probs=64.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
.|||+||||+++|+..+||+|||+|+++||||++++ +.+..+|+.|++||++|+||.+|+.||.++...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 499999999999999999999999999999999975 778899999999999999999999999987643
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=3.2e-12 Score=121.50 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=63.2
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 250 KDLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 250 ~~~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
+..|||++|||++. .+..+|+++||+|+++||||++.+.+. +.+.|..|++||++|+||.+|+.|+..+.+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g 79 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG 79 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 46799999999997 678999999999999999999876543 567899999999999999999999987764
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=2.4e-12 Score=121.59 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=60.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK---AIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~---a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||++|||++. ++..+|+++||+|+++||||++.+..+ +...+..|++||++|+||.+|+.|+..+.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g 75 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN 75 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 489999999997 789999999999999999999865322 335688999999999999999999887754
No 53
>KOG0720|consensus
Probab=99.35 E-value=2.6e-12 Score=135.39 Aligned_cols=74 Identities=41% Similarity=0.641 Sum_probs=68.6
Q ss_pred ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 247 ~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
.+....|+|.+|||+.+++.++|||.||++|...|||||. .+.|++.|+.|+.||++|+|+.+|..||..+...
T Consensus 230 re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 230 RELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 3445789999999999999999999999999999999998 7899999999999999999999999999987654
No 54
>PHA03102 Small T antigen; Reviewed
Probab=99.35 E-value=5.3e-13 Score=124.28 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=59.5
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 253 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 253 d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.+|+||||+++| |..+||+|||++++++|||++++ .+.|+.|++||++|+|+.+|..||.++..
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 589999999999 99999999999999999999863 37999999999999999999999998854
No 55
>KOG0722|consensus
Probab=99.25 E-value=5.8e-12 Score=124.25 Aligned_cols=74 Identities=27% Similarity=0.477 Sum_probs=67.4
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926 248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 322 (512)
Q Consensus 248 ~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~ 322 (512)
..+..|+|+||||.++++..+|.+|||+||++||||++++ +++.+.|..|..||++|.|.+.|..||-.++.-.
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 3456899999999999999999999999999999999985 7777999999999999999999999998876543
No 56
>KOG0624|consensus
Probab=99.20 E-value=1.1e-11 Score=127.14 Aligned_cols=71 Identities=37% Similarity=0.492 Sum_probs=64.1
Q ss_pred ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHccChhhhhHHHHH
Q psy3926 247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK---KAIETFHLLSKAIEVLLDKSARAAYDSV 317 (512)
Q Consensus 247 ~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~---~a~~~F~~I~~AYevLsDp~~R~~YD~~ 317 (512)
.....+|||.||||.++|+..||.||||++|.+||||...+.. .|+.+|.-|..|-+||+||++|+.||.-
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 3445789999999999999999999999999999999987543 3889999999999999999999999974
No 57
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=4.2e-09 Score=114.54 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=64.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
...+|-|..=.. ..+|++.|+++|+.||.|..|.|..+++|+|||+|.+.++|..|+.+ +..+.+.+|.|.++.
T Consensus 274 ~~~~l~v~nL~~----~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 274 PGSVLMVSGLHQ----EKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCEEEEeCCCC----CCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 445777765532 14899999999999999999999888899999999999999999974 677788999999986
Q ss_pred CC
Q psy3926 487 PD 488 (512)
Q Consensus 487 ~~ 488 (512)
.+
T Consensus 350 ~~ 351 (481)
T TIGR01649 350 QQ 351 (481)
T ss_pred cc
Confidence 54
No 58
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=2e-10 Score=126.59 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|++.|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.||..+..|
T Consensus 295 ~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 295 DTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 36999999999999999999988754 37999999999999999997 466777899999999876555
No 59
>KOG0714|consensus
Probab=99.09 E-value=5.7e-11 Score=117.64 Aligned_cols=69 Identities=43% Similarity=0.623 Sum_probs=63.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
..|+|.||||.++|+..+|++||++++++||||+++.. ..+..+|.+|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 35999999999999999999999999999999998865 2455589999999999999999999999986
No 60
>KOG0550|consensus
Probab=99.06 E-value=1.1e-10 Score=122.37 Aligned_cols=68 Identities=37% Similarity=0.550 Sum_probs=64.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVI 318 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 318 (512)
..|||.||||.++++..+|++|||++++.||||++.++ .+++..|+.+.+||.+|+||.+|..||.-.
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 67999999999999999999999999999999999887 689999999999999999999999999743
No 61
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.03 E-value=2.1e-10 Score=102.17 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=47.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHcc
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL 306 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLs 306 (512)
..++|+||||++++|.+||+++||+|++++|||+.+ + .+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 459999999999999999999999999999999964 3 368899999999985
No 62
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.99 E-value=4.6e-10 Score=113.64 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=50.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHHHHHHHccC
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD--D-----KKAIETFHLLSKAIEVLLD 307 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~--~-----~~a~~~F~~I~~AYevLsD 307 (512)
.|+|+||||++++|.++||++||+|+++||||++.+ . +.|.++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999642 1 3478999999999999975
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.95 E-value=5.5e-09 Score=99.50 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=60.2
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
.|||++|||++. .+...+++.|+.|.+.+|||+..+... +.+.-..|++||.+|.||-+|+.|-..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 499999999997 899999999999999999999765432 44577899999999999999999998777
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.95 E-value=4.7e-09 Score=98.45 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 264 CSEQDIRSAYRKKALKCHPDKNPDDK-----KAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 264 As~~eIKkAYRkLa~k~HPDk~~~~~-----~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
.+..+|+++||+|+++||||+.++.. .+...|..|++||++|+||.+|+.|+..+.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~ 65 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI 65 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 57889999999999999999965432 26689999999999999999999999988743
No 65
>PHA02624 large T antigen; Provisional
Probab=98.90 E-value=1.3e-09 Score=120.04 Aligned_cols=59 Identities=29% Similarity=0.362 Sum_probs=55.3
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHH
Q psy3926 252 LDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAY 314 (512)
Q Consensus 252 ~d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~Y 314 (512)
.++|++|||+++| +..+||+|||+++++||||+++ + .+.|+.|+.||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 4899999999999 9999999999999999999974 3 47999999999999999999998
No 66
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=9.2e-09 Score=79.13 Aligned_cols=54 Identities=35% Similarity=0.560 Sum_probs=48.4
Q ss_pred HHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926 432 LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 485 (512)
Q Consensus 432 L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa 485 (512)
|.++|++||+|..|.+..+++|+|+|+|.+.++|..|+. ++..+.+.+|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999988767999999999999999997 577788899999996
No 67
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.71 E-value=2.1e-08 Score=77.16 Aligned_cols=53 Identities=36% Similarity=0.577 Sum_probs=44.9
Q ss_pred HHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEee
Q psy3926 44 LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY 96 (512)
Q Consensus 44 l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~ 96 (512)
|.++|++||+|..|.+..+++|.|+|||.+.++|..|++. ..-.-++||+|+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 7899999999999999887789999999999999999983 3334567888887
No 68
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.67 E-value=1.1e-07 Score=87.80 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
-.+|+++|+++|++||.|.+|.|..+ .+|+|||+|++.++|..|+. ++..+.+.+|+|+|+.+++.
T Consensus 44 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 44 WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 36999999999999999999998764 38999999999999999997 35667789999999986554
No 69
>KOG0122|consensus
Probab=98.63 E-value=5.9e-08 Score=95.74 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=65.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
.+++|+|. +...+++|++|+++|..||.|..|.|..++ +|+|||.|.+.++|.+||. ++.|+....|.
T Consensus 188 D~~tvRvt-----NLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVT-----NLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred ccceeEEe-----cCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 45677775 223579999999999999999999998765 8999999999999999997 58999999999
Q ss_pred EEecCCCc
Q psy3926 482 LNYLNPDV 489 (512)
Q Consensus 482 V~wa~~~~ 489 (512)
|.|+.|.+
T Consensus 263 vEwskP~~ 270 (270)
T KOG0122|consen 263 VEWSKPSN 270 (270)
T ss_pred EEecCCCC
Confidence 99998753
No 70
>KOG0130|consensus
Probab=98.62 E-value=4.7e-08 Score=88.90 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=65.0
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC-Ccccccc--c
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP-DVEREES--R 495 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~-~~~r~~~--~ 495 (512)
..||+++.+.|..||+|.+|.+..++ ||||+|+|++.+.|.+||. ++..+.+.++.|.|+.- .|++.++ +
T Consensus 83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp~~g~r~rr 162 (170)
T KOG0130|consen 83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGPERGKRTRR 162 (170)
T ss_pred chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCCccCccccc
Confidence 48999999999999999999998776 7999999999999999997 46788999999999985 4545554 5
Q ss_pred CCCCCC
Q psy3926 496 KQPKNP 501 (512)
Q Consensus 496 ~~s~~~ 501 (512)
++||.+
T Consensus 163 k~S~~r 168 (170)
T KOG0130|consen 163 KQSPER 168 (170)
T ss_pred cccccc
Confidence 777763
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-08 Score=99.94 Aligned_cols=76 Identities=39% Similarity=0.494 Sum_probs=66.3
Q ss_pred hhhhcccCCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCChHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926 242 LSSIMADIKDLDLYGLLELTI---DCSEQDIRSAYRKKALKCHPDKN--PDDKKAIETFHLLSKAIEVLLDKSARAAYDS 316 (512)
Q Consensus 242 ~~~~~~~~~~~d~YeiLgv~~---~As~~eIKkAYRkLa~k~HPDk~--~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~ 316 (512)
+..-..+++..|+|.+|||+. -+++.+|.++.++...+||||+. +|+.+..+.|..|+.||++|+|+..|..||.
T Consensus 33 ~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 33 TREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred HhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 445567788899999999996 58999999999999999999996 3445567899999999999999999999986
Q ss_pred H
Q psy3926 317 V 317 (512)
Q Consensus 317 ~ 317 (512)
.
T Consensus 113 ~ 113 (379)
T COG5269 113 N 113 (379)
T ss_pred c
Confidence 4
No 72
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.53 E-value=1.9e-07 Score=96.35 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|++||.|.+|.|+.+. +|+|||+|.+.++|.+||. ++..+.+.+|+|.|+..++.|
T Consensus 279 ~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 279 PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence 368999999999999999999998764 8999999999999999997 477788899999999887654
No 73
>KOG0144|consensus
Probab=98.45 E-value=1.9e-07 Score=98.13 Aligned_cols=68 Identities=22% Similarity=0.370 Sum_probs=58.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-----hcCCCCCceEEEecCCCccccc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-----ELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-----~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..||.++++||++||.|++|.|+.+ .+|||||.|.+.+-|..||+. ..+.-+.||.|+||.++.++..
T Consensus 135 ~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 135 QCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 4899999999999999999999874 499999999999999999973 3455668999999998776653
No 74
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.30 E-value=8.8e-06 Score=90.89 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=60.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. + ....++++.|+++|+.||.|.+|.|..+ .+|||||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 106 ~~~rLfVG---n--Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 106 IMCRVYVG---S--ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred CCCEEEEc---C--CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 44566554 2 1236899999999999999999998754 48999999999999999997 46667788999
Q ss_pred EEecCCC
Q psy3926 482 LNYLNPD 488 (512)
Q Consensus 482 V~wa~~~ 488 (512)
|.+....
T Consensus 181 V~rp~~~ 187 (612)
T TIGR01645 181 VGRPSNM 187 (612)
T ss_pred ecccccc
Confidence 9876543
No 75
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.27 E-value=1.8e-06 Score=89.15 Aligned_cols=65 Identities=20% Similarity=0.384 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+||++|+++|+.||+|.+|.|+.+ .+|||||+|.+.++|.+||. ++..+.+.+|.|.|+.+..
T Consensus 13 ~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~ 84 (352)
T TIGR01661 13 QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS 84 (352)
T ss_pred CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence 46999999999999999999998764 36999999999999999996 4677788999999997654
No 76
>KOG0144|consensus
Probab=98.24 E-value=1.6e-06 Score=91.30 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-----hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-----ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-----~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..++|.+|+++|.+||.|.+|.|++|| +|||||.|.+.++|.+|+.. .....-.|++|+||.++.+|.
T Consensus 44 rt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 44 RTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI 121 (510)
T ss_pred ccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc
Confidence 479999999999999999999999876 89999999999999999863 233344799999999998885
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.22 E-value=3.3e-06 Score=85.04 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~ 487 (512)
...||++|+++|+.||.|++|.|+.++ +|+|||+|.+.++|..|+. ++..+.+.+|.|+++..
T Consensus 14 ~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 14 LKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 368999999999999999999998764 7999999999999999997 46778889999999973
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.21 E-value=1.9e-06 Score=67.45 Aligned_cols=47 Identities=32% Similarity=0.497 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
.++|+++|+++|+.||.|..+.|..+ .+|+|+|+|.+.++|..|+..
T Consensus 8 ~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 8 PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 47999999999999999999988864 489999999999999999973
No 79
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.21 E-value=2.9e-06 Score=89.13 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=56.4
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
.+|+++|+++|+.||+|.+|.|+.+ .+|+|||+|.+.++|..||. ++..+.+.+|+|.|+.+..
T Consensus 118 ~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~ 188 (346)
T TIGR01659 118 DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG 188 (346)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence 5999999999999999999998764 36999999999999999996 4677788999999997643
No 80
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.09 E-value=9.6e-06 Score=85.24 Aligned_cols=66 Identities=29% Similarity=0.372 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCC--CCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGL--PNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~--~~~pL~V~wa~~~~~ 490 (512)
..+|+++|+++|++||.|..|.|..++ +|+|||+|++.++|.+||.. ++.+ ...+|+|.|+.....
T Consensus 203 ~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 203 RTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 469999999999999999999888654 69999999999999999974 3332 336999999986433
No 81
>smart00360 RRM RNA recognition motif.
Probab=98.09 E-value=1.1e-05 Score=61.62 Aligned_cols=58 Identities=34% Similarity=0.499 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTL 482 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V 482 (512)
..+++++|+.+|..||.|..|.|..++ +|+|+|+|.+.++|..|+.. +..+.+..|.|
T Consensus 6 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 6 PDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred cccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 358999999999999999999988754 58999999999999999963 34445566655
No 82
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.06 E-value=1.1e-05 Score=90.24 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+++++|+++|+.||.|.+|.|..+ .+|||||+|.+.++|..||. ++..+.+..|.|.|+.++|...
T Consensus 214 ~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 214 PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 36899999999999999999998753 48999999999999999997 4677788999999999876654
No 83
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.04 E-value=8.8e-06 Score=75.29 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|.++.|. .+.+|.|+|+|++.++|+.|+.. ..-+...+|+|.|-.+.
T Consensus 45 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 45 GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 58999999999999999999764 25689999999999999999963 23345678999998654
No 84
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.02 E-value=1.2e-05 Score=87.86 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~~ 488 (512)
..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+||+. ...+.+.+|.|.|+..+
T Consensus 12 ~~~te~~L~~~f~~fG~V~~v~i~~~-k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 12 QDVVEADLVEALIPFGPVSYVMMLPG-KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEECC-CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 46999999999999999999988764 69999999999999999973 35567789999999754
No 85
>KOG0114|consensus
Probab=98.01 E-value=1.9e-05 Score=69.30 Aligned_cols=64 Identities=30% Similarity=0.428 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
-.+|.+...+||.+||.|..|.|...+ +|+|||+|+++.+|.+|+.+ +....+..|.|-|..+.
T Consensus 28 ~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 28 FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 469999999999999999999998654 89999999999999999986 55566678999887653
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=98.00 E-value=1.6e-05 Score=60.90 Aligned_cols=58 Identities=33% Similarity=0.477 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKLY--ELGLPNCPLTL 482 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V 482 (512)
..+++++|+++|..||.|..+.+..+. +|+|+|+|.+.++|..|+.. +..+.+.++.|
T Consensus 9 ~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 9 PDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 368999999999999999999888664 79999999999999999963 34444555555
No 87
>KOG0148|consensus
Probab=97.99 E-value=9.5e-06 Score=81.44 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~ 487 (512)
..||+.|+..|+.||+|.+|.|-++ +|+|||.|.+.++|..||- ++....+.++++.|-+.
T Consensus 175 ~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 175 GLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred cccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 5899999999999999999999876 7999999999999999996 46778889999999764
No 88
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.94 E-value=1.7e-05 Score=87.81 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
..+||++|+++|+.||.|.+|.|+.++ +|+|||+|.+.++|.+|+.. ...+.+.+|.|.|+...
T Consensus 10 ~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 10 PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 479999999999999999999998653 69999999999999999963 34467899999998643
No 89
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.93 E-value=2.7e-05 Score=86.79 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhhcc--CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKY--GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~f--G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
..+|++.|+++|+.| |.|+.|.+. +++|||+|++.++|.+|+. ++..+.+..|.|.|+.++..
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 368999999999999 999999775 5699999999999999996 46777889999999987544
No 90
>KOG0146|consensus
Probab=97.93 E-value=1.2e-05 Score=80.51 Aligned_cols=69 Identities=19% Similarity=0.372 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHHh-----hcCCCCCceEEEecCCCccccccc
Q psy3926 427 YTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY-----ELGLPNCPLTLNYLNPDVEREESR 495 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~~-----~~~~~~~pL~V~wa~~~~~r~~~~ 495 (512)
-+||+++.+|..||.|+++.++. ..||||||.|.+..+|..||.. .....+.-|.|+|+..+.+|.-+|
T Consensus 31 q~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lRR 108 (371)
T KOG0146|consen 31 QSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTLRR 108 (371)
T ss_pred ccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHHHH
Confidence 57999999999999999999885 4599999999999999999973 233445789999999999998654
No 91
>KOG4206|consensus
Probab=97.92 E-value=1.9e-05 Score=77.51 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=55.2
Q ss_pred CCCHHHHHH----HhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 426 VYTRESLTK----IFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~----iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
.+..+.|+. +|++||.|.+|++++ +.+|.|+|+|.+.++|-.|+.. +..+.+.|++|.||..+
T Consensus 20 kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 20 KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 466677776 999999999999996 5689999999999999999974 78888999999999765
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.92 E-value=4.3e-05 Score=58.88 Aligned_cols=60 Identities=33% Similarity=0.515 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY 484 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w 484 (512)
...+++.|+++|..||.|..+.+..+. +|+|+|+|.+.++|..|+.. +..+.+..++|.|
T Consensus 9 ~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 9 PDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 358899999999999999999988754 79999999999999999974 3435667777765
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.91 E-value=2.9e-05 Score=77.40 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~ 486 (512)
...||++|+++|+.||+|.+|.|..+. +|+|||+|.+.++|..|+. ++..+.+.+|.|+-..
T Consensus 15 ~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 15 PKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 368999999999999999999998754 6899999999999999997 5788889999998655
No 94
>KOG1789|consensus
Probab=97.90 E-value=1.1e-05 Score=92.20 Aligned_cols=54 Identities=35% Similarity=0.423 Sum_probs=46.8
Q ss_pred CCCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHcc
Q psy3926 250 KDLDLYGLLELTID----CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL 306 (512)
Q Consensus 250 ~~~d~YeiLgv~~~----As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLs 306 (512)
..-+-|+||.|+.+ -..+.||++|++||.+||||||| +..++|..+++||+.|.
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 34578999999864 34578999999999999999996 57899999999999998
No 95
>KOG0117|consensus
Probab=97.89 E-value=2.6e-05 Score=82.76 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=68.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
.+.+|||=+-++.- ..+||+.|.++|+.||.|+.|+.++| +|||.|.+.++|.+|++. +..+.+.+|.|+.|.
T Consensus 255 ~ms~VKvLYVRNL~--~~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLM--ESTTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeeccc--hhhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 56678888877642 47999999999999999999998866 999999999999999984 677888999999999
Q ss_pred CCccccc
Q psy3926 487 PDVEREE 493 (512)
Q Consensus 487 ~~~~r~~ 493 (512)
++.+...
T Consensus 330 P~~k~k~ 336 (506)
T KOG0117|consen 330 PVDKKKK 336 (506)
T ss_pred Chhhhcc
Confidence 8766654
No 96
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.89 E-value=2.1e-05 Score=61.47 Aligned_cols=49 Identities=35% Similarity=0.503 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG 86 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g 86 (512)
++|++.|+++|++||.|..+.|.. +.+|.|+|+|.+.++|+.|+..=-|
T Consensus 9 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 9 DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 699999999999999999997654 5789999999999999999975433
No 97
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.88 E-value=3.2e-05 Score=83.00 Aligned_cols=65 Identities=22% Similarity=0.412 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|..|+. ++..+.+.+|.|.|+....
T Consensus 196 ~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 196 FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence 47999999999999999999998853 37999999999999999996 4666778999999987543
No 98
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.87 E-value=3e-05 Score=61.52 Aligned_cols=46 Identities=33% Similarity=0.541 Sum_probs=40.9
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~ 471 (512)
.+|+++|+++|+.||.|..|.+..++ +|+|||+|.+.++|.+|+..
T Consensus 9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999998865 79999999999999999975
No 99
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.84 E-value=4.4e-05 Score=81.95 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.||.|.+|.|+.+ .+|+|||+|.+.++|.+||.. +..+.+.+|.|.+...+..+
T Consensus 99 ~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~ 171 (457)
T TIGR01622 99 LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNR 171 (457)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhh
Confidence 36999999999999999999999864 379999999999999999973 56677889999987654433
No 100
>KOG0113|consensus
Probab=97.83 E-value=9.1e-05 Score=75.37 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
+.+|+.|+..|+.||+|+.|.|..+ .+|||||+|++..+...|-++ +..+.+..|.|.+-++
T Consensus 112 dT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 112 DTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred cccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 4789999999999999999998864 489999999999999999874 5666667788876544
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=97.78 E-value=4.5e-05 Score=61.55 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=41.4
Q ss_pred HHHHHHHhh----ccCCeeEEE--Ec-c-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926 429 RESLTKIFS----KYGKINILV--IS-P-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTL 482 (512)
Q Consensus 429 e~~L~~iFs----~fG~I~~V~--i~-~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V 482 (512)
+++|+++|+ .||.|.+|. +. . ..+|+|||.|.+.++|.+|+.. +..+.+.+|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 577888888 999999984 32 2 2489999999999999999974 44444555554
No 102
>KOG0107|consensus
Probab=97.78 E-value=4.9e-05 Score=72.23 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~ 490 (512)
...++.+|..+|+.||+|-+|.|.....|+|||+|++.-+|..|+.. +..+-+.-++|+...+.+.
T Consensus 20 ~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 20 SRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 46899999999999999999999998899999999999999999974 5556678899999887666
No 103
>smart00360 RRM RNA recognition motif.
Probab=97.77 E-value=7.5e-05 Score=56.86 Aligned_cols=46 Identities=37% Similarity=0.551 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCC-----CceEEEEeccHHHHHHHHHh
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~-----~g~A~vef~~~~aa~~a~~~ 83 (512)
+++++.|+.+|+.||.|..+.|...+ +|.|+|+|.+.++|..|+..
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999876543 69999999999999999853
No 104
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.72 E-value=6.7e-05 Score=81.58 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~ 487 (512)
..+|++.|+++|+.||.|..|.|+.+ .+|+|||+|.+.++|..||. ++..+.+..|.|.|+..
T Consensus 305 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 305 LYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 46999999999999999999988754 48999999999999999997 46777788999999864
No 105
>KOG0132|consensus
Probab=97.72 E-value=6.7e-05 Score=84.07 Aligned_cols=67 Identities=16% Similarity=0.394 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~ 492 (512)
.+++|.+|..+|..||.|++|.++.. +|||||++....+|++|++. +++..+..++|.|+.++..+.
T Consensus 431 k~v~e~dL~~~feefGeiqSi~li~~-R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 431 KNVTEQDLANLFEEFGEIQSIILIPP-RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred chhhHHHHHHHHHhcccceeEeeccC-CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 36999999999999999999988764 89999999999999999974 788888999999999887765
No 106
>KOG4207|consensus
Probab=97.71 E-value=5.5e-05 Score=73.54 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL 480 (512)
..+.+|||.=-.- -.|.++|+.+|.+||.|-+|.|+.++ +|+|||-|....+|+.|+.. +..+.+.-|
T Consensus 11 ~gm~SLkVdNLTy-----RTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 11 EGMTSLKVDNLTY-----RTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred ccceeEEecceec-----cCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 3556677643222 36789999999999999999999764 79999999999999999974 566677889
Q ss_pred EEEecC
Q psy3926 481 TLNYLN 486 (512)
Q Consensus 481 ~V~wa~ 486 (512)
.|+.|+
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 998886
No 107
>KOG0149|consensus
Probab=97.70 E-value=4.8e-05 Score=75.11 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=42.0
Q ss_pred CCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCC
Q psy3926 427 YTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLP 476 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~ 476 (512)
...+.|+++|.+||+|++.+|+.|+ ||++||+|.+.++|.+|.++-+...
T Consensus 24 T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piI 78 (247)
T KOG0149|consen 24 THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPII 78 (247)
T ss_pred cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcc
Confidence 4578999999999999887777654 8999999999999999998644433
No 108
>KOG0145|consensus
Probab=97.67 E-value=6.7e-05 Score=75.09 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=62.7
Q ss_pred eEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926 413 LRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 485 (512)
Q Consensus 413 lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa 485 (512)
|.|.+-.. ++|+|+|+.+|+.-|.|+++.+..|| -||+||-|-+.++|++||. ++..+-...|+|+||
T Consensus 44 LIvNYLPQ-----~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 44 LIVNYLPQ-----NMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred eeeeeccc-----ccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 55555432 69999999999999999999998876 6999999999999999997 467777889999999
Q ss_pred CCCccc
Q psy3926 486 NPDVER 491 (512)
Q Consensus 486 ~~~~~r 491 (512)
+|-...
T Consensus 119 RPSs~~ 124 (360)
T KOG0145|consen 119 RPSSDS 124 (360)
T ss_pred cCChhh
Confidence 876443
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=97.67 E-value=0.00012 Score=56.05 Aligned_cols=45 Identities=36% Similarity=0.557 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCC---CceEEEEeccHHHHHHHHH
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL 82 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~---~g~A~vef~~~~aa~~a~~ 82 (512)
+.+.+.|+++|++||.|..+.+...+ +|.|+|+|.+..+|..|+.
T Consensus 10 ~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 10 DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHH
Confidence 58999999999999999999876554 7999999999999999985
No 110
>KOG0121|consensus
Probab=97.66 E-value=8.5e-05 Score=67.49 Aligned_cols=61 Identities=25% Similarity=0.431 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 427 YTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
.+|+.|-++|++-|+|..|+|.-++ =|+|||+|-+.++|..|+++ ++.+.+.||.|.|--+
T Consensus 48 ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 48 TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 6799999999999999999998765 39999999999999999985 7888999999999765
No 111
>KOG0568|consensus
Probab=97.65 E-value=5.2e-05 Score=74.70 Aligned_cols=55 Identities=20% Similarity=0.459 Sum_probs=48.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHH-HccC
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE-VLLD 307 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYe-vLsD 307 (512)
+.||.||||..+|+.++++.||..|++++|||.... ....+.|.+|.+||. +|+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999998753 445689999999998 6653
No 112
>PLN03213 repressor of silencing 3; Provisional
Probab=97.65 E-value=8.4e-05 Score=79.73 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-CCceEEEEEcCH--HHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-KRGSALLEFEHA--DSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-kkg~A~V~F~s~--~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
-.+|+++|+.+|+.||.|.+|.|+.. -+|+|||+|.+. .++.+||. +++.+.+..|+|.-|++-
T Consensus 20 ydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 20 ESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 46899999999999999999998853 389999999987 78899997 589999999999988653
No 113
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.64 E-value=0.00014 Score=67.11 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=60.5
Q ss_pred CCCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEe
Q psy3926 406 LNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNY 484 (512)
Q Consensus 406 ~~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~w 484 (512)
.++.+.||.|+|-++. -....|-..+..-++.||+|++|.+|+ +-+|+|+|.+..+|=+||.+ ....++..+++.|
T Consensus 82 kepPMsTIVVRWlkkn-m~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKN-MQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhc-CChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence 3567889999997663 222333344555579999999999997 46999999999999999975 4566788899999
Q ss_pred cC
Q psy3926 485 LN 486 (512)
Q Consensus 485 a~ 486 (512)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 64
No 114
>KOG0145|consensus
Probab=97.62 E-value=0.0001 Score=73.85 Aligned_cols=102 Identities=22% Similarity=0.331 Sum_probs=70.3
Q ss_pred cceeEEEeecCCCC------------CCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHhh
Q psy3926 410 NYRLRIRWKSSSTD------------TDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE 472 (512)
Q Consensus 410 ~~~lkVKWk~~~~~------------~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~~ 472 (512)
+.+|||.+.+-..+ +..+|..+|..||+.||.|..-.|+-+ .+|-+||.|.-..+|+.||..-
T Consensus 110 ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 110 NKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred cceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 34777777665422 146899999999999999977666644 4899999999999999999853
Q ss_pred cCC----CCCceEEEecCCCcccccccCCCCCCcccCCCCCCC
Q psy3926 473 LGL----PNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGP 511 (512)
Q Consensus 473 ~~~----~~~pL~V~wa~~~~~r~~~~~~s~~~~~~~~d~~~~ 511 (512)
.|. ...||+|+|+..|.-...-.-+++.-.-|.+-|.||
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp 232 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGP 232 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCc
Confidence 332 237999999987733322122233333445666665
No 115
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.61 E-value=0.00014 Score=69.25 Aligned_cols=63 Identities=30% Similarity=0.454 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
..+|++.|+++|..||.|..|.|..++ +|+|||+|.+.++|..|+.. +..+.+.+|.|.++..
T Consensus 125 ~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 125 YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 469999999999999999999887653 79999999999999999974 5778889999999754
No 116
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.57 E-value=0.00013 Score=57.89 Aligned_cols=47 Identities=32% Similarity=0.510 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCC----CceEEEEeccHHHHHHHHHhh
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLYE 84 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~----~g~A~vef~~~~aa~~a~~~e 84 (512)
+.+++.|+.+|+.||.|..|.+...+ +|.|+|+|.+.+.|..|+..-
T Consensus 9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 57899999999999999999886654 799999999999999999763
No 117
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.53 E-value=0.00034 Score=53.72 Aligned_cols=59 Identities=34% Similarity=0.519 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCC----CceEEEEeccHHHHHHHHHhhhCC--CCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLYELGL--PNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~----~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~ 96 (512)
+.+++.|+.+|+.||+|..+.+.... +|.|+|+|.+.++|..|+..--|. .+.+++|.|
T Consensus 10 ~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 10 DVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 57899999999999999999876544 799999999999999999754443 233455543
No 118
>KOG0125|consensus
Probab=97.44 E-value=0.00019 Score=73.83 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=59.7
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccccccC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREESRK 496 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~~~~ 496 (512)
-|-|-+|+.+|.+||+|.+|.|+-+ .||++||+|++.++|++|-. +++...++.|.|.-|-.+....+..+
T Consensus 107 rFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v 182 (376)
T KOG0125|consen 107 RFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKV 182 (376)
T ss_pred cccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCccc
Confidence 4778999999999999999998853 48999999999999999975 57778889999999877765554333
No 119
>KOG0111|consensus
Probab=97.44 E-value=9e-05 Score=72.64 Aligned_cols=64 Identities=31% Similarity=0.411 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
+.+||..|..-|-.||.|.+|.|+- +.+|+|||+|.-.++|.+||.+ +..+.+..|+|.+|.|+
T Consensus 20 deVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 20 DEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred HHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 4689999999999999999999985 4699999999999999999974 78888999999999875
No 120
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.42 E-value=0.00029 Score=71.17 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~ 98 (512)
.-|++.|+++|+.||.|.+|.|.. ..+|.|.|+|.+.++|+.|+.. -.-+.+.+|+|+|-.
T Consensus 15 ~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 15 KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 468999999999999999998743 3579999999999999999953 233456678888754
No 121
>KOG0127|consensus
Probab=97.41 E-value=0.00022 Score=77.52 Aligned_cols=61 Identities=25% Similarity=0.423 Sum_probs=54.3
Q ss_pred HHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 429 RESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
+++|..+|+.||.|..|+|+.+. .|+|||.|....+|..|+. ++..+.+.|+-|.||.++.
T Consensus 131 ~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 131 KPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred cHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 45999999999999999999643 6999999999999999998 4777889999999998763
No 122
>KOG0105|consensus
Probab=97.40 E-value=0.00022 Score=68.40 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 423 DTDVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 423 ~~~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
.++++-|.+|.+||.+||.|..|.+.... ..+|||+|++.-+|+.||. ++..+....|.|+++++-
T Consensus 14 LP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 14 LPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred CCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 34679999999999999999998874322 5799999999999999996 578888899999999754
No 123
>KOG0153|consensus
Probab=97.38 E-value=0.00042 Score=71.88 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=52.7
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh---hcCCCCCceEEEecCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~---~~~~~~~pL~V~wa~~ 487 (512)
.++|.+|++.|-+||.|.+|++.. ++|||||.|.+..+|+.|... .+-..+..|.|.|.++
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 599999999999999999998865 467999999999999999864 3444556799999988
No 124
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.32 E-value=0.00038 Score=75.74 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=49.5
Q ss_pred HHHHHHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 430 ESLTKIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 430 ~~L~~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
+.|+++|++||.|++|.|.... .|+|||+|++.++|.+||. ++..+.+.+|.|.|..
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 6789999999999999997531 5899999999999999997 4667788999999874
No 125
>KOG0415|consensus
Probab=97.20 E-value=0.0013 Score=68.44 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=49.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..|.++|.-|||.||+|.++.|+.++ --+|||+|++.++|++|.- .++-..+..|.|.|..
T Consensus 250 VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 250 VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 46789999999999999999988765 3789999999999999963 2444556778887764
No 126
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.19 E-value=0.00066 Score=75.86 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh--hcCC-CCCceEEEec
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELGL-PNCPLTLNYL 485 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~--~~~~-~~~pL~V~wa 485 (512)
..+||++|+++|++||.|.+|.|..+ .+|+|||+|.+.++|.+||.. +..+ .+..|.|.++
T Consensus 68 ~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 68 RDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 36999999999999999999988753 489999999999999999974 3333 2345666554
No 127
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.17 E-value=0.00082 Score=67.18 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~ 98 (512)
.-|++.|+++|+.||+|.+|.|. ...+|.|.|+|.+.++|+.|+.. -.=+.+.|+.|+-.+
T Consensus 16 ~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 16 KATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 36899999999999999999764 35568999999999999999953 223455677777554
No 128
>KOG0148|consensus
Probab=97.14 E-value=0.00058 Score=68.88 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~ 492 (512)
.++-+.|++-|.+||.|.+..|++| .|||+||.|-+.++|++||.. +.=+..+.|+..||--+|.+.
T Consensus 73 eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~ 146 (321)
T KOG0148|consen 73 EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEM 146 (321)
T ss_pred hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcccc
Confidence 5788999999999999999988864 599999999999999999985 333455789999997666443
No 129
>smart00361 RRM_1 RNA recognition motif.
Probab=97.05 E-value=0.0012 Score=53.21 Aligned_cols=47 Identities=30% Similarity=0.505 Sum_probs=39.6
Q ss_pred HHHHHHHHh----hcCcccEE---Eec-----cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 41 RESLTKIFS----KYGKINIL---VIS-----PKKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 41 ~~~l~~~f~----kyG~v~~~---v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
++.|+.+|+ +||.|..| ++. .+.+|.|.|+|.+.++|..|+..-.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578899999 99999988 343 346899999999999999999876665
No 130
>KOG0108|consensus
Probab=96.99 E-value=0.0015 Score=70.62 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..++|+.|.+||+..|.|.++.+..|+ +|+||++|.+.+.|..|+.. +..+.+.+|+|.|+.....+.
T Consensus 28 ~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 28 YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAE 102 (435)
T ss_pred CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhH
Confidence 468999999999999999999988654 89999999999999999984 678888999999998766554
No 131
>KOG3192|consensus
Probab=96.91 E-value=0.006 Score=57.20 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=55.9
Q ss_pred CCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTI--DCSEQDIRSAYRKKALKCHPDKNPD----D-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~--~As~~eIKkAYRkLa~k~HPDk~~~----~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..+||.++|... ...+.-+..-|.-.+++.|||+... + .-|.+.-..|++||.+|.||-+|+.|-..+.+
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 458999998654 3566666768999999999998421 1 24778899999999999999999999887765
No 132
>KOG0131|consensus
Probab=96.83 E-value=0.0015 Score=62.64 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=55.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
-++++.|.++|-+-|+|.+|.|++++ .|+|||+|.+.++|+=||+ +.+.+.+.||+|.-+.
T Consensus 20 kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 20 KVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 47889999999999999999999864 7999999999999999997 5788889999999887
No 133
>KOG0723|consensus
Probab=96.82 E-value=0.002 Score=56.69 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccCh
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp 308 (512)
...--.||||.++++.+.||.|+|++-+.-|||+..+ | -.-.+|++|+++|...
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 3345679999999999999999999999999999965 4 3445799999999754
No 134
>KOG0124|consensus
Probab=96.76 E-value=0.0058 Score=63.95 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=49.7
Q ss_pred CCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926 427 YTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY 484 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w 484 (512)
.-||.||.-|..||+|++|.|.= +.||+|||+|+-.++|..|+.. +.-+.+..|+|.-
T Consensus 125 l~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 125 LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred echHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 66899999999999999999873 5699999999999999999974 5556667788863
No 135
>KOG0107|consensus
Probab=96.69 E-value=0.0019 Score=61.65 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCC--CcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC--PLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~n--Pl~~~~l~ 98 (512)
.-++..|..+|.+||.|-.|+|-....|-|+|||++..+|+-|+.+=-|.-=+ -++|+--.
T Consensus 21 ~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 21 RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 57899999999999999999999999999999999999999999876665422 25555433
No 136
>KOG4206|consensus
Probab=96.69 E-value=0.003 Score=62.30 Aligned_cols=60 Identities=28% Similarity=0.507 Sum_probs=50.1
Q ss_pred CCCHHHHHH----HHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEeec
Q psy3926 38 VYTRESLTK----IFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~----~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~l 97 (512)
....+.|++ ||+.||.|++|++.+ |.+|.|.|.|.+..+|-.|+..=.|.+ +.|+.|.+-
T Consensus 20 kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 20 KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 466788887 999999999999864 889999999999999999998877774 456666544
No 137
>KOG0123|consensus
Probab=96.62 E-value=0.0043 Score=66.00 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=63.2
Q ss_pred cceeEEEeecCC-------CCCCCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHHh--hcCCCC
Q psy3926 410 NYRLRIRWKSSS-------TDTDVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKLY--ELGLPN 477 (512)
Q Consensus 410 ~~~lkVKWk~~~-------~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~~--~~~~~~ 477 (512)
...++|-|..+- +.+..+|...|.++|+.||.|.++.+-.+. +|+ ||+|++.++|.+||.. +.-+.+
T Consensus 64 ~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 64 GKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred CcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence 345666665542 223578999999999999999999887653 789 9999999999999974 444566
Q ss_pred CceEEEecCCCcccc
Q psy3926 478 CPLTLNYLNPDVERE 492 (512)
Q Consensus 478 ~pL~V~wa~~~~~r~ 492 (512)
..+-|.-...+.+|.
T Consensus 143 kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 143 KKIYVGLFERKEERE 157 (369)
T ss_pred CeeEEeeccchhhhc
Confidence 788888777766665
No 138
>KOG0123|consensus
Probab=96.60 E-value=0.0043 Score=66.00 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~ 490 (512)
.+||..|.++|+.+|+|.+|.||.+. -|+|+|.|.+..+|.+|+.. -..+.+.|+.|-|....|.
T Consensus 9 ~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 9 DVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred cCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 58999999999999999999999764 68999999999999999973 4556789999999976544
No 139
>KOG1190|consensus
Probab=96.50 E-value=0.013 Score=62.34 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=63.5
Q ss_pred ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
+.|.+-=+..+ ..+|.|.|-.+|+-||.|..|.|+.+|+-.|+|.|.+...|..|+.+ +..+.+.+|+|++.+..
T Consensus 297 n~vllvsnln~---~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNE---EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCch---hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 44444444333 47999999999999999999999999999999999999999999975 77788899999998753
No 140
>KOG0147|consensus
Probab=96.47 E-value=0.0038 Score=68.14 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
-++|++.|+.||..||.|+.|.+..+ .+|++||+|.+.+.|.+|.. +++.+.+.+|+|.-..
T Consensus 288 fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 288 FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred cCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 47999999999999999999998765 38999999999999999965 4677788888886543
No 141
>KOG0130|consensus
Probab=96.42 E-value=0.0048 Score=56.80 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=50.2
Q ss_pred CCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926 39 YTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 98 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~ 98 (512)
-++|.+...|.-||+|.||-+.- =-||-|||||+|.+.|..|+.. -.-+..-++.|-|--
T Consensus 84 atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 84 ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 58999999999999999997642 3469999999999999999864 344677889999864
No 142
>KOG0127|consensus
Probab=96.40 E-value=0.0046 Score=67.58 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-----h---cCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-----E---LGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-----~---~~~~~~pL~V~wa~~~~~r 491 (512)
-+.||+.|.+.|++||.|..+.|+.++ +|+|||.|.+..+|.++|.. + +-+.+.-|.|+-|-++.+.
T Consensus 302 fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 302 FDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred ccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 368899999999999999999888643 89999999999999999974 2 2345577888888776554
Q ss_pred c
Q psy3926 492 E 492 (512)
Q Consensus 492 ~ 492 (512)
.
T Consensus 382 ~ 382 (678)
T KOG0127|consen 382 A 382 (678)
T ss_pred H
Confidence 3
No 143
>KOG4207|consensus
Probab=96.37 E-value=0.0043 Score=60.70 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=42.6
Q ss_pred CCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 39 YTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
=+.|.|+.+|.|||.|-||-|. ...+|-|+|-|..+.+|+-|+..--|.
T Consensus 25 Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 25 TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 5899999999999999999874 467899999999999999998764443
No 144
>KOG0153|consensus
Probab=96.32 E-value=0.016 Score=60.48 Aligned_cols=59 Identities=22% Similarity=0.455 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCC-----CCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP-----NCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~-----~nPl~~~~l~~ 99 (512)
+.++-+|+.-|-+||+|..|+|... +|+|+|.|.|+.||+.|.. .+.- .-=|+|.|=.|
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae--~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAE--KSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHH--hhcceeeecceEEEEEeCCC
Confidence 6899999999999999999988765 5799999999999998874 3321 11377787666
No 145
>KOG0109|consensus
Probab=96.22 E-value=0.0086 Score=61.20 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
...++..|+.+|.+||+|..+.|++ +++||..++...|..||++ +..+.+..|.|+=+..+
T Consensus 12 ~~~~~~elr~lFe~ygkVlECDIvK---NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 12 REATEQELRSLFEQYGKVLECDIVK---NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cccchHHHHHHHHhhCceEeeeeec---ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 5789999999999999999999875 5999999999999999985 66677778888776554
No 146
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.13 E-value=0.014 Score=55.32 Aligned_cols=63 Identities=32% Similarity=0.442 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926 37 DVYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP 99 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~ 99 (512)
..++++.|+.+|++||.|..+.|. .+.+|-|+|+|.+.+.|..|+..-.|. ...||.|.|..+
T Consensus 125 ~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 125 YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 369999999999999999887653 367899999999999999999875543 455688888754
No 147
>KOG0131|consensus
Probab=96.12 E-value=0.0075 Score=57.96 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHhhccCCeeEE--EEc----cCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINIL--VIS----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V--~i~----~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~ 489 (512)
..+||..|-.+|+.||.|... +|. .+.+|+|+|.|++.+++.+||.. +.-+.+.|++|.++..+.
T Consensus 106 ~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 106 PEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred cchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 369999999999999998542 111 24589999999999999999985 444566899999997653
No 148
>KOG0149|consensus
Probab=96.09 E-value=0.0075 Score=59.97 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=38.0
Q ss_pred CHHHHHHHHhhcCcccEEEe-c----cCCCceEEEEeccHHHHHHHHHh
Q psy3926 40 TRESLTKIFSKYGKINILVI-S----PKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~-~----~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
..|.|+++|.+||+|+..|| + .+.||-.+|-|.+.++|..|.++
T Consensus 25 ~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 25 HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence 46789999999999987654 3 47889999999999999999864
No 149
>KOG0110|consensus
Probab=96.09 E-value=0.005 Score=69.01 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=61.8
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTL 482 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V 482 (512)
...|.|+--.- .-+...++.||..||.|.+|.|+++ .+|+|||+|-+..+|.+|+.+ .+.+.+..|.+
T Consensus 613 ~tKIlVRNipF-----eAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVL 687 (725)
T KOG0110|consen 613 GTKILVRNIPF-----EATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVL 687 (725)
T ss_pred cceeeeeccch-----HHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhe
Confidence 34566665544 3688999999999999999999975 279999999999999999864 68888899999
Q ss_pred EecCCC
Q psy3926 483 NYLNPD 488 (512)
Q Consensus 483 ~wa~~~ 488 (512)
.||...
T Consensus 688 EwA~~d 693 (725)
T KOG0110|consen 688 EWAKSD 693 (725)
T ss_pred ehhccc
Confidence 999864
No 150
>KOG0122|consensus
Probab=96.06 E-value=0.012 Score=58.83 Aligned_cols=63 Identities=25% Similarity=0.433 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
.-+++.|++||.+||.|.-|-| ....||-|+|=|.+.+.|..|+.. -.|+-+.=|.|+|-.|.
T Consensus 200 d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 200 DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 5789999999999999998854 236789999999999999999974 56665555999998775
No 151
>KOG0117|consensus
Probab=96.00 E-value=0.013 Score=62.93 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCC-CCCceEEE
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGL-PNCPLTLN 483 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~-~~~pL~V~ 483 (512)
.++.||+|..+|.+-|+|-++.|.. +.+|+|||.|.+.+.|..||+. +.++ .+.+|.|.
T Consensus 93 rD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 93 RDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred ccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3688999999999999999998764 4699999999999999999973 2322 44566664
No 152
>KOG4208|consensus
Probab=95.95 E-value=0.015 Score=56.85 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=51.3
Q ss_pred CCCHHHHHHHhhcc-CCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 426 VYTRESLTKIFSKY-GKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~iFs~f-G~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
++.+..+..+|.+| |.|..+++..+ .+|||||+|++.+-|.=|-. +++-+...-|.|.+..+.
T Consensus 60 g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 60 GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 57888899999988 77777777653 48999999999999987764 466677788999998665
No 153
>KOG0126|consensus
Probab=95.87 E-value=0.0012 Score=63.22 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
-..||.+|--.||+||.|.+|.+..++ +|+||+.|++.-+-..||.+ +..+.+..|+|....
T Consensus 45 ~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 45 YELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 357899999999999999999988654 89999999999999999964 677788999997664
No 154
>KOG0113|consensus
Probab=95.81 E-value=0.016 Score=59.36 Aligned_cols=49 Identities=29% Similarity=0.498 Sum_probs=42.9
Q ss_pred CCHHHHHHHHhhcCcccEEE-----eccCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 39 YTRESLTKIFSKYGKINILV-----ISPKKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v-----~~~k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
=++..|++.|++||.|..|. |..|.+|=|+|||.+..+-.+|.+.--|+
T Consensus 113 T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 113 TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 37999999999999999995 35689999999999999999998765555
No 155
>KOG1456|consensus
Probab=95.54 E-value=0.023 Score=59.84 Aligned_cols=63 Identities=30% Similarity=0.444 Sum_probs=54.0
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCC--CceEEEecCCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPN--CPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~--~pL~V~wa~~~ 488 (512)
.+|.|.|..|.-.-|+|..|+|.++.--+|.|||++.+.|.+|..+ +...-+ +.|+|+||++.
T Consensus 133 pItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 133 PITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 6999999999999999999999998888999999999999999864 222222 68999999765
No 156
>KOG0110|consensus
Probab=95.49 E-value=0.036 Score=62.35 Aligned_cols=61 Identities=33% Similarity=0.333 Sum_probs=54.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
..|.+.|...|..+|.|.+|.|..++ .|+|||+|.+.++|.+|++. ++.+.++.|.|++..
T Consensus 526 ~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 526 DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 46689999999999999999998643 29999999999999999986 688888999999988
No 157
>KOG0114|consensus
Probab=95.46 E-value=0.046 Score=48.40 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHhhhCCCCC--CcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLYELGLPNC--PLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~e~g~~~n--Pl~~~~l~~~ 100 (512)
..|.|..-.||.+||.|.-|-|. +.-+|+|+|+|.+..+|..|+.-=.|.--. +|.+-...|.
T Consensus 29 ~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 29 KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 47899999999999999999874 466899999999999999999877776444 4777665543
No 158
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.39 E-value=0.045 Score=50.92 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=60.8
Q ss_pred CCCCcceEEEEeecCCCCCCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeec
Q psy3926 19 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL 97 (512)
Q Consensus 19 ~~~~~~lk~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l 97 (512)
++-..-|-|+|-..- -..-++...+..-+++||.|..|-++.+ -+|||.|.+..+|=.|+.. ..+-|.+=+.++|.
T Consensus 83 epPMsTIVVRWlkkn-m~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKN-MQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhc-CChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcCCCCCceEEeecc
Confidence 566677889996422 2234677777888899999999999876 4999999999999888853 66777888999997
Q ss_pred C
Q psy3926 98 N 98 (512)
Q Consensus 98 ~ 98 (512)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 5
No 159
>KOG4661|consensus
Probab=95.28 E-value=0.027 Score=62.00 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926 429 RESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~ 490 (512)
-.+|..||++||.|....|..+ -+.|+||++.+.++|.++|.+ .+.+.+..|.|.-+.-+|-
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp~ 487 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEPG 487 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCcc
Confidence 5789999999999988766543 278999999999999999974 7889999999988875543
No 160
>KOG0124|consensus
Probab=95.07 E-value=0.035 Score=58.28 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCccc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r 491 (512)
+.+|++|+..|..||+|..+.+.. ..+||+||+|.+..+...||.. -+.+.+.-|+|--.-.||..
T Consensus 221 DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 221 DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred CccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCch
Confidence 589999999999999999998864 4699999999999999999963 35555566777666555443
No 161
>KOG1456|consensus
Probab=95.03 E-value=0.082 Score=55.83 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=60.5
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
.-.|..-+-... +.++-|.|-.||=.||.|+.|.+.+.+.|+|+|++.+..+.++||.+ +..+.+..|.|.....
T Consensus 286 ~g~VmMVyGLdh---~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 286 PGCVMMVYGLDH---GKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCcEEEEEeccc---cccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 334554454432 46889999999999999999999999999999999999999999975 5666777777776654
No 162
>KOG0431|consensus
Probab=94.98 E-value=0.03 Score=61.20 Aligned_cols=46 Identities=35% Similarity=0.409 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-------HHHHHHHHHHHHHHH
Q psy3926 259 ELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-------KAIETFHLLSKAIEV 304 (512)
Q Consensus 259 gv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-------~a~~~F~~I~~AYev 304 (512)
+|..=.+.++|||+|||..+..||||.++.+ -|++.|..+++|+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3444579999999999999999999976542 245666666666654
No 163
>KOG0121|consensus
Probab=94.93 E-value=0.061 Score=49.31 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=51.2
Q ss_pred CHHHHHHHHhhcCcccEEEec--c-C--CCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 40 TRESLTKIFSKYGKINILVIS--P-K--KRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~--~-k--~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
+||.+-+||++-|+|--|||. + | -=|-.+|||-+.++|+.|+++=.| +-+-||.+-|=.+=
T Consensus 49 tEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 49 TEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred cHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence 689999999999999999984 2 2 228899999999999999997554 67889999996633
No 164
>KOG4212|consensus
Probab=94.90 E-value=0.057 Score=57.93 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=51.4
Q ss_pred CCHHHHHHHh-hccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 427 YTRESLTKIF-SKYGKINILVISP----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 427 ~te~~L~~iF-s~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
|-=.+|+++| .+-|.|+-|.++- +.+|||+|+|++.+++++|++ +.+.+...+|.|+...+.
T Consensus 56 ~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 56 YRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred hhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 3346788888 5789999998875 458999999999999999997 478888999999987653
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.81 E-value=0.054 Score=41.91 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHH
Q psy3926 429 RESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK 469 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai 469 (512)
.+.+...|..||.|.++.+. +....++|.|++..+|+.|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 35677789999999998886 45789999999999999985
No 166
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.019 Score=54.84 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=49.0
Q ss_pred hcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHHHHHHHc
Q psy3926 245 IMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD--D-----KKAIETFHLLSKAIEVL 305 (512)
Q Consensus 245 ~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~--~-----~~a~~~F~~I~~AYevL 305 (512)
+.......+.|.+||+...++..+|+++|+++...+|||+..+ . ..+.+.+..|++||+.+
T Consensus 106 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 106 AREQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HHHcccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444799999999999999999999999999999998432 2 24678888999998753
No 167
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.13 Score=49.04 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=53.2
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 253 DLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 253 d~YeiLgv~~~As--~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
|++.++|+++.+. .+.++..|+.+.+.||||+....+. +...+..++.||.+|.||-.|..|-....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 4556666666543 4558899999999999999865433 34688999999999999999999987766
No 168
>KOG4205|consensus
Probab=94.25 E-value=0.033 Score=58.08 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=51.4
Q ss_pred CCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHhh-cCCCCCceEEEecCCCcccc
Q psy3926 427 YTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~~-~~~~~~pL~V~wa~~~~~r~ 492 (512)
.|++.|++.|++||.|.++++.++ .+|++||+|++.+...+++... ..+.+..+.++-+.++.+..
T Consensus 18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~ 89 (311)
T KOG4205|consen 18 TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQT 89 (311)
T ss_pred ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccc
Confidence 678999999999999999887764 3899999999999999998653 33455666666666554443
No 169
>KOG0533|consensus
Probab=94.08 E-value=0.12 Score=52.12 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
-.+++++|+++|..||.+..|.|.-+ ..|+|-|.|...++|..||+ +++.+.+.++++.-+.++..
T Consensus 93 ~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 93 YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 46889999999999999988888744 47999999999999999997 36777778888877765533
No 170
>KOG0132|consensus
Probab=94.05 E-value=0.093 Score=59.76 Aligned_cols=63 Identities=17% Similarity=0.403 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~ 101 (512)
..++.+|..+|..||+|..|+|.-. +|||.|.|-...+|+.|+++ +++..+.=++|.|--...
T Consensus 432 ~v~e~dL~~~feefGeiqSi~li~~-R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 432 NVTEQDLANLFEEFGEIQSIILIPP-RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred hhhHHHHHHHHHhcccceeEeeccC-CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 4789999999999999999987654 68999999999999999986 555544446779965433
No 171
>KOG4209|consensus
Probab=93.92 E-value=0.12 Score=51.72 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=59.8
Q ss_pred eeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEec
Q psy3926 412 RLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYL 485 (512)
Q Consensus 412 ~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa 485 (512)
..+..|-.+-+ -+.|-+.+...|..+|.|..|.|+.++ +|+|+|+|.+.+.+..|+. ++..+.+.++.|+|.
T Consensus 100 d~~sv~v~nvd--~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGNVD--FLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEeccc--cccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 44566665533 345656699999999999988888754 7899999999999999998 566677788999998
Q ss_pred CCC
Q psy3926 486 NPD 488 (512)
Q Consensus 486 ~~~ 488 (512)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 172
>KOG0146|consensus
Probab=93.76 E-value=0.12 Score=52.65 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhh--cCCCCCceEEEecCCCcc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~--~~~~~~pL~V~wa~~~~~ 490 (512)
.+.+.+|..+|-.||.|.+..+.-|+ |.++||.|.+..+|.+||..- +.+.-..|+|..-+++..
T Consensus 296 EFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 296 EFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 48899999999999999887766543 899999999999999999853 333335688877666543
No 173
>KOG4454|consensus
Probab=93.66 E-value=0.069 Score=52.91 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~ 487 (512)
..+||+.|.|+|-+-|+|..|.|.+++ -.+|+|.|.+.-+..-|++ ++..+.+.+++|++-.+
T Consensus 19 ~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 19 SGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 358999999999999999999998754 2389999999999999997 46667778888876544
No 174
>PLN03213 repressor of silencing 3; Provisional
Probab=93.36 E-value=0.14 Score=55.92 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEe-ccCCCceEEEEeccH--HHHHHHHH
Q psy3926 38 VYTRESLTKIFSKYGKINILVI-SPKKRGSALLEFEHA--DSARRAKL 82 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~-~~k~~g~A~vef~~~--~aa~~a~~ 82 (512)
.-+++.|+.+|+.||.|.+|-| ..+-||-|.|||.+- .++..|+.
T Consensus 21 dVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 21 SVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHH
Confidence 4689999999999999999954 445689999999987 45666664
No 175
>KOG0109|consensus
Probab=93.19 E-value=0.12 Score=53.15 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
-+-++|+..|.+||+|....|. +++|||.|.-.++|..||+ +++.+.+.+++|+-.-.+.
T Consensus 90 ctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 90 CTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 3468999999999999888886 5699999999999999996 5788888999998765443
No 176
>KOG1029|consensus
Probab=93.15 E-value=0.63 Score=53.34 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhhcCcccEE---E--ec--cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 38 VYTRESLTKIFSKYGKINIL---V--IS--PKKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~---v--~~--~k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
-.|-+.-|-+|-.-|==.-| | ++ -|.-..-|+||. =|+.++...=-|.
T Consensus 31 fitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfS--IAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 31 FITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFS--IAMKLIKLKLQGI 85 (1118)
T ss_pred ccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHH--HHHHHHHHHhcCC
Confidence 35666666666654422211 1 11 122234577775 3555555444454
No 177
>KOG4660|consensus
Probab=93.07 E-value=0.094 Score=57.70 Aligned_cols=46 Identities=33% Similarity=0.538 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
-.+.+.|+.||++||+|-.|-+...++|-.+|||=++..|+.|++.
T Consensus 86 ~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 86 SVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred cCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH
Confidence 4899999999999999999888889999999999999999999974
No 178
>KOG0125|consensus
Probab=92.93 E-value=0.13 Score=53.57 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=45.8
Q ss_pred CCcceEEEEeecCCCCCCCCHHHHHHHHhhcCcccEEEe---ccCCCceEEEEeccHHHHHHHHHh
Q psy3926 21 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVI---SPKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 21 ~~~~lk~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~---~~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
+..||-|+=.- =-|-+-+|+.+|.|||.|+||-| .+..||-.+|-|.+.++|+.|-+.
T Consensus 95 ~pkRLhVSNIP-----FrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIP-----FRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCC-----ccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHH
Confidence 44566665322 13777889999999999999965 457789999999999999999864
No 179
>KOG0151|consensus
Probab=92.87 E-value=0.36 Score=54.70 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=50.0
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
.++|+.|-..|..||+|-+|.|.=- -+.|+||-|.+..+|++|++. +.-....++++-|..
T Consensus 185 sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 185 SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 4899999999999999999987621 278999999999999999975 333455677888874
No 180
>KOG0106|consensus
Probab=92.83 E-value=0.069 Score=52.90 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
...+.+|.++|..||.|.+|.| +.|++||+|.+.-+|..||.. ...+...-+.|.|+.+
T Consensus 12 ~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 12 RARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3568899999999999999988 678999999999999999964 3444444589999984
No 181
>KOG4660|consensus
Probab=92.69 E-value=0.11 Score=57.09 Aligned_cols=60 Identities=27% Similarity=0.439 Sum_probs=49.2
Q ss_pred CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
+..+.+|-| .+.. ..+++++|..||+.||.|..|.+...++|-.||+|=++-+|+.|++.
T Consensus 72 ~~~~~~L~v-~nl~----~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 72 DMNQGTLVV-FNLP----RSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred cCccceEEE-EecC----CcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH
Confidence 344455544 3333 36999999999999999999998888999999999999999999973
No 182
>KOG0105|consensus
Probab=92.60 E-value=0.11 Score=50.44 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEee
Q psy3926 37 DVYTRESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNY 96 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~ 96 (512)
++.-+..+..||.|||.|..|-+.. .-.+-|+|||++..+|+-|+.---|+- .+-|.|++
T Consensus 16 ~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 16 GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3477888999999999999997743 335789999999999999995444432 23455554
No 183
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.41 E-value=0.25 Score=38.15 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCCH---HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHH
Q psy3926 38 VYTR---ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK 81 (512)
Q Consensus 38 ~Y~~---~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~ 81 (512)
||+. +.+++.|..||+|+++-+. .+.-.+.|.|++..+|+.|+
T Consensus 8 Gf~~~~~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 8 GFPPDLAEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred eECchHHHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 5654 4466789999999998887 23458999999999999985
No 184
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.25 E-value=0.69 Score=48.53 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=39.2
Q ss_pred HHHhhccCCeeEEEEccCC------CceE--EEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926 433 TKIFSKYGKINILVISPKK------RGSA--LLEFEHADSARRAKLY--ELGLPNCPLTLNY 484 (512)
Q Consensus 433 ~~iFs~fG~I~~V~i~~~k------kg~A--~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w 484 (512)
.++|.+||.|..|+|.++- .+-+ +|.|.+.++|.++|.. +.-+.+..|+..|
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeec
Confidence 3889999999999997642 1223 9999999999999974 4444556666654
No 185
>KOG0108|consensus
Probab=92.16 E-value=0.86 Score=49.72 Aligned_cols=65 Identities=26% Similarity=0.277 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHhhhCCCCCC--cEEeecCCCc
Q psy3926 37 DVYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLYELGLPNCP--LTLNYLNPDV 101 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nP--l~~~~l~~~~ 101 (512)
...++|.|..||+.+|.|.++-+ +.+-+|-|.+||.+.+.|..|+++=.|.--++ |+|.|=.-..
T Consensus 28 ~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 28 YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 35899999999999999999954 45888999999999999999999877766665 9999877443
No 186
>KOG0116|consensus
Probab=91.71 E-value=0.22 Score=53.94 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHhh-cCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~~-~~~~~~pL~V~wa~~ 487 (512)
-+.+++.|.+.|..||.|+..-|.- +..++|||+|.+.+++..||+.. ..+.+..|.|+.-++
T Consensus 298 ~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 298 PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4689999999999999998876543 22489999999999999999853 444556677765544
No 187
>KOG1190|consensus
Probab=91.65 E-value=0.27 Score=52.56 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~ 96 (512)
-.|.|.|.-+|.-||+|.-|-|--+|+-.|||.|++...|.+|+..=-|. -+.||.|..
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 48999999999999999999988888899999999999999999764443 346677664
No 188
>KOG1855|consensus
Probab=91.30 E-value=0.16 Score=54.44 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC-----------C-------CceEEEEEcCHHHHHHHHH
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK-----------K-------RGSALLEFEHADSARRAKL 470 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~-----------k-------kg~A~V~F~s~~~A~~Ai~ 470 (512)
+..-+.|.+||+.+|.|.+|.||+- + +-||+|+|...++|.+|..
T Consensus 242 Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 242 DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 4555999999999999999999963 1 6799999999999999986
No 189
>KOG0147|consensus
Probab=90.99 E-value=0.38 Score=53.08 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=48.2
Q ss_pred CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
+-+|.+.++ ++||.|.+|.|-+..-||.+|-|.+.+.|..|+.. +.=+.+..|+.+|..
T Consensus 466 I~edV~Eec-~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 466 IREDVIEEC-GKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHH-HhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 445566666 99999999999887779999999999999999974 555666788888874
No 190
>KOG4205|consensus
Probab=90.78 E-value=0.27 Score=51.33 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~ 492 (512)
.++++.+|++.|.+||.|..+++..+ .+|+++|.|.+.+++..++.. -..+....+.|.=|.++....
T Consensus 107 ~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 107 PDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred CCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhhcc
Confidence 47999999999999999999887653 489999999999999999864 355666778888777765544
No 191
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=90.73 E-value=0.38 Score=42.40 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=30.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
..+-++|++.|+.||.|.-|.+... -..|+|-|.+.++|..|+..
T Consensus 12 ~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 12 PTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp S--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHH
T ss_pred CcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHH
Confidence 5779999999999999999988753 35899999999999999973
No 192
>KOG2314|consensus
Probab=90.70 E-value=0.33 Score=53.80 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCcccEEEec----cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 41 RESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
+-.|.++|+|||.|+++.+. .+-+|-+++||++...|..|+++=-|.
T Consensus 78 k~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 78 KKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred HHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 45678999999999999985 467899999999999999999976664
No 193
>KOG1855|consensus
Probab=88.86 E-value=0.26 Score=52.98 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=44.1
Q ss_pred CCHHHHHHHHhhcCcccEEEeccC-----------C-------CceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926 39 YTRESLTKIFSKYGKINILVISPK-----------K-------RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 98 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~k-----------~-------~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~ 98 (512)
-..+.|++||+.+|.|.+|-|+.- + +=+|||||.+.++|.-|... +-+.--+=|++.-|.
T Consensus 243 h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvkLl~ 322 (484)
T KOG1855|consen 243 HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVKLLG 322 (484)
T ss_pred hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhhhhh
Confidence 345999999999999999987653 2 57899999999999998763 333333334444444
No 194
>KOG0106|consensus
Probab=88.60 E-value=0.26 Score=48.95 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=48.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
-+...+|.++|..||.+..+++ +.+.|||+|++..+|..|+. ++..+.+.+|++....
T Consensus 110 r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 110 RVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 4667899999999999955554 78999999999999999996 4778888999994443
No 195
>KOG0533|consensus
Probab=88.59 E-value=1.1 Score=45.37 Aligned_cols=65 Identities=20% Similarity=0.391 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEec----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
||+.++|+++|..||++.-+.|. ....|+|-|-|.....|++|++.=-| +-.-|+++.-++++..
T Consensus 94 ~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 94 GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 79999999999999988888773 46679999999999999999985333 3344688887776533
No 196
>KOG0415|consensus
Probab=87.55 E-value=0.48 Score=49.95 Aligned_cols=53 Identities=38% Similarity=0.543 Sum_probs=40.7
Q ss_pred EEEeecCCCCCCCCHHHHHHHHhhcCcccEE-EeccCCCc----eEEEEeccHHHHHHHH
Q psy3926 27 IRWKSSSTDTDVYTRESLTKIFSKYGKINIL-VISPKKRG----SALLEFEHADSARRAK 81 (512)
Q Consensus 27 ~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~-v~~~k~~g----~A~vef~~~~aa~~a~ 81 (512)
|=+-|+-+. .-+.|+|.-|||.||.|..- ||.-.|-| -|+|||.++++|+.|.
T Consensus 241 VLFVCKLNP--VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~Ay 298 (479)
T KOG0415|consen 241 VLFVCKLNP--VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAY 298 (479)
T ss_pred eEEEEecCC--cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHH
Confidence 334454432 45678999999999999987 56555555 4899999999999987
No 197
>KOG2135|consensus
Probab=87.18 E-value=0.52 Score=51.28 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=60.2
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHH-HhhcCCCCCceEEEecCCC
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK-LYELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai-~~~~~~~~~pL~V~wa~~~ 488 (512)
.+.|.+.=... +.-|-.+|...|.+||.|+.|.|.-. --.|+|+|.+..+|-.|- -++..+.+.+|+|-|..+-
T Consensus 372 hs~l~lek~~~----glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 372 HSPLALEKSPF----GLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cchhhhhccCC----CCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34455543332 56788999999999999999987543 458999999999995554 4677788899999999986
Q ss_pred ccccc
Q psy3926 489 VEREE 493 (512)
Q Consensus 489 ~~r~~ 493 (512)
+....
T Consensus 447 ~~tn~ 451 (526)
T KOG2135|consen 447 PVTNI 451 (526)
T ss_pred cccCc
Confidence 65554
No 198
>KOG4208|consensus
Probab=86.88 E-value=1.1 Score=44.27 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhhc-CcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 37 DVYTRESLTKIFSKY-GKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 37 ~~Y~~~~l~~~f~ky-G~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
.|+.+-.+..+|..| |.|.-+++++ +.||=|+|||.+.+-|.-|...=.++ ...=|.+..+.|.
T Consensus 59 ~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 59 HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 378888888998888 7777777765 45699999999999999877543332 2334777877666
No 199
>KOG0111|consensus
Probab=86.72 E-value=0.71 Score=45.96 Aligned_cols=65 Identities=31% Similarity=0.402 Sum_probs=51.1
Q ss_pred CCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 39 YTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
.|+..|..-|=-||||.+|-| +.|-+|-|+|||...++|.+|+-| |.-|-.--|+|..-.|.-..
T Consensus 22 VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 22 VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence 566677777888999999976 569999999999999999999975 55555556777766665443
No 200
>KOG4211|consensus
Probab=85.85 E-value=2.5 Score=46.35 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=45.3
Q ss_pred CCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHHhhcCCCCCc-eEEEec
Q psy3926 427 YTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKLYELGLPNCP-LTLNYL 485 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~~~~~~~~~p-L~V~wa 485 (512)
-|+++|.++|+..+ |+++++... ..|-|+|||++.+++.+|++.+-...+++ |.|=-+
T Consensus 22 at~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 22 ATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred ccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 68999999999776 888877753 47999999999999999998765555544 555333
No 201
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=84.57 E-value=2.9 Score=35.89 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=35.1
Q ss_pred HHHHHHHhhccC-CeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 429 RESLTKIFSKYG-KINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 429 e~~L~~iFs~fG-~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
..-|+.|+...| .|.+| ..++|+|-|.+.+.|.+|.+. +-...+.-|.|.|...
T Consensus 20 ~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 20 KNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp HHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred HHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 345677777886 67555 258999999999999999873 3445678899999843
No 202
>KOG0126|consensus
Probab=84.50 E-value=0.11 Score=50.27 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=51.1
Q ss_pred EEEEeecCCCC-----CC----CCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 26 RIRWKSSSTDT-----DV----YTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 26 k~~Wk~~~~~~-----~~----Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
|.+|-..=-|. || -|+.+|.-+||.||+|+||.+.+ |.+|-|++=|.+...-.+||-|=.|.
T Consensus 25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 78998765554 43 57889999999999999997643 78899999999999999999765554
No 203
>KOG4212|consensus
Probab=83.85 E-value=1.9 Score=46.80 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=54.3
Q ss_pred ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926 411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 485 (512)
Q Consensus 411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa 485 (512)
++|.|+= .+-++|=..|++-|..||.|..+.|...-+..++|.|.+.+.|+.|+. ++..+....|.|+|.
T Consensus 537 ~qIiirN-----lP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRN-----LPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEec-----CCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4566652 234799999999999999999888844333444999999999999987 466677788998874
No 204
>KOG2314|consensus
Probab=83.07 E-value=1.7 Score=48.48 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=42.3
Q ss_pred HHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHHh--hcCCC-CCceEEE
Q psy3926 429 RESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLP-NCPLTLN 483 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~-~~pL~V~ 483 (512)
...|..+|++||+|..+.++. +-+|++|++|++..+|..||+. +..+. ++.+.|.
T Consensus 78 k~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 78 KKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 356678899999999999984 3489999999999999999984 33322 2445553
No 205
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=82.69 E-value=2.7 Score=36.91 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=41.2
Q ss_pred CHHHHHHHhhccCCeeEEE------------EccCCCceEEEEEcCHHHHHHHHHh-hcCCCCC-ceEEEecC
Q psy3926 428 TRESLTKIFSKYGKINILV------------ISPKKRGSALLEFEHADSARRAKLY-ELGLPNC-PLTLNYLN 486 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~------------i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~-pL~V~wa~ 486 (512)
.-+.+-+.|++||.|.+.. -.....+.--|.|.+..+|.+|++. +.-+.+. .+-|.|..
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence 4567778899999997775 1123467899999999999999974 4444443 45577763
No 206
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=81.95 E-value=2.7 Score=38.51 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHc
Q psy3926 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVL 305 (512)
Q Consensus 253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevL 305 (512)
.-..||||++..+.++|.+.|.+|-..-+|++.++ .-.=.+|..|.+.|
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl 107 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERL 107 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998863 12233455565554
No 207
>KOG2202|consensus
Probab=81.27 E-value=1.1 Score=45.52 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=41.4
Q ss_pred HHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926 429 RESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY 484 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w 484 (512)
|+..+++-.+||.|+.++||.+. .|-++|.|...++|++|+.. +--+.+.||...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 34444544599999999999754 79999999999999999974 3333445565543
No 208
>KOG0120|consensus
Probab=81.27 E-value=3.3 Score=45.98 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=45.6
Q ss_pred HHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926 430 ESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 486 (512)
Q Consensus 430 ~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~ 486 (512)
++++.=+++||.|.+|.|... --|+-||+|++.++|..|... +..+.+..+...|..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 344444689999999999864 158999999999999999974 677788888877764
No 209
>KOG1548|consensus
Probab=80.30 E-value=3.2 Score=43.88 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=54.8
Q ss_pred CCCCcceeEEEeecCCCCCCCCC-------HHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHHh--hcCC
Q psy3926 406 LNPENYRLRIRWKSSSTDTDVYT-------RESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKLY--ELGL 475 (512)
Q Consensus 406 ~~~~~~~lkVKWk~~~~~~~~~t-------e~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~~--~~~~ 475 (512)
....+++|.|+---.+..- .-+ +++|++=.++||+|.+|+|+... .|-|.|.|.+.++|..+|+. +.-+
T Consensus 261 k~r~~~tVi~kn~Ftp~~~-~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDF-EKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cccCCcEEEeeecCCHHHh-ccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3457788998877665321 122 34555557899999999998644 69999999999999999985 3334
Q ss_pred CCCceEEE
Q psy3926 476 PNCPLTLN 483 (512)
Q Consensus 476 ~~~pL~V~ 483 (512)
.+..|+..
T Consensus 340 dgRql~A~ 347 (382)
T KOG1548|consen 340 DGRQLTAS 347 (382)
T ss_pred cceEEEEE
Confidence 44555544
No 210
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=79.84 E-value=5.6 Score=37.33 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=49.1
Q ss_pred CCCCcceeEEEeecCCCCC-CCCCHHH---HHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh-hcCCCCCce
Q psy3926 406 LNPENYRLRIRWKSSSTDT-DVYTRES---LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPL 480 (512)
Q Consensus 406 ~~~~~~~lkVKWk~~~~~~-~~~te~~---L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL 480 (512)
.++.+-||.|.-.....+. ..++++. |-..|..||.|.=|.+.. ++-+|+|.+..+|.+|+.. +....+..|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals~dg~~v~g~~l 99 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALSLDGIQVNGRTL 99 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHHGCCSEETTEEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHccCCcEECCEEE
Confidence 3567789998887722222 3566644 445578899887666554 6999999999999999974 666677788
Q ss_pred EEE-----ecCC
Q psy3926 481 TLN-----YLNP 487 (512)
Q Consensus 481 ~V~-----wa~~ 487 (512)
+|. |+..
T Consensus 100 ~i~LKtpdW~~~ 111 (146)
T PF08952_consen 100 KIRLKTPDWLKG 111 (146)
T ss_dssp EEEE--------
T ss_pred EEEeCCccHHHH
Confidence 884 7654
No 211
>KOG1029|consensus
Probab=79.60 E-value=25 Score=41.04 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=22.6
Q ss_pred CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCC
Q psy3926 39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP 88 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~ 88 (512)
.|-+.-.+.|..||... .|.. |-|...|..+. ...|||
T Consensus 10 vT~~Er~K~~~qF~~Lk--------p~~g---fitg~qArnff-lqS~LP 47 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK--------PGQG---FITGDQARNFF-LQSGLP 47 (1118)
T ss_pred cchHHHHHHHHHHhccC--------CCCC---ccchHhhhhhH-HhcCCC
Confidence 45555667777787653 2333 44666666665 566665
No 212
>KOG4211|consensus
Probab=79.57 E-value=2.6 Score=46.30 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=41.6
Q ss_pred CHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhCCCCCC
Q psy3926 40 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELGLPNCP 91 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g~~~nP 91 (512)
|++.|+.+|+.- .|.+|++.. +..|-|.|||.+-+.+++|+++..=...++
T Consensus 23 t~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~R 76 (510)
T KOG4211|consen 23 TEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHR 76 (510)
T ss_pred cHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCc
Confidence 789999998875 488888754 678999999999999999998754444445
No 213
>KOG1457|consensus
Probab=79.07 E-value=7.8 Score=38.95 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHHh--hcCCCC---CceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKLY--ELGLPN---CPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~~--~~~~~~---~pL~V~wa~~~~~r~~ 493 (512)
.++-.-+|..+|..|---+...|.-.. +-.|||+|.+...|.+|++. ++.+.. ..|+|+.|+.-..+..
T Consensus 44 ~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr 123 (284)
T KOG1457|consen 44 NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKR 123 (284)
T ss_pred cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccccc
Confidence 367788999999998767666554322 35899999999999999874 444332 5699999987666654
No 214
>KOG0163|consensus
Probab=78.69 E-value=35 Score=39.84 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.7
Q ss_pred EEeccHHHHHH
Q psy3926 69 LEFEHADSARR 79 (512)
Q Consensus 69 vef~~~~aa~~ 79 (512)
|||-+-.+|..
T Consensus 507 i~f~DNqDcIe 517 (1259)
T KOG0163|consen 507 IEFTDNQDCIE 517 (1259)
T ss_pred eEeccchhHHH
Confidence 55555555543
No 215
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=75.46 E-value=4.5 Score=35.62 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
+-+.+.|...|++||+|.-|-+... .-.|.|=|.+.++|..|+..
T Consensus 12 ~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 12 PTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp S--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHH
T ss_pred CcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHH
Confidence 4679999999999999998877654 35899999999999888874
No 216
>KOG4454|consensus
Probab=74.36 E-value=3.6 Score=41.10 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHhhcCcccEEEeccCCCc---eEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 37 DVYTRESLTKIFSKYGKINILVISPKKRG---SALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g---~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
.|.+++-|.++|-.=|.|.-|+|.+.+-| -|+|+|.+-...-.|.+.|.|. -.-|+++..-.+.
T Consensus 19 ~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 19 SGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 36899999999999999999999763222 6999999999999999988774 4556776655544
No 217
>KOG0116|consensus
Probab=72.95 E-value=3.9 Score=44.50 Aligned_cols=46 Identities=28% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEe---c--cCCCceEEEEeccHHHHHHHHHh
Q psy3926 38 VYTRESLTKIFSKYGKINILVI---S--PKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~---~--~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
+=+.+.|.+.|++||+|..+=| + -+..+-|+|||.+..++..|+..
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred CCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 4688999999999999999844 2 12236789999999999988853
No 218
>KOG1548|consensus
Probab=72.56 E-value=7.4 Score=41.20 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCcccEEEec-cCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCcccc
Q psy3926 42 ESLTKIFSKYGKINILVIS-PKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVERE 104 (512)
Q Consensus 42 ~~l~~~f~kyG~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~~~~ 104 (512)
++|++=-+|||.|..|||. .--.|.|.|-|.+.++|+++++.=.|. |....+-+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR--------~fdgRql~A 346 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR--------WFDGRQLTA 346 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe--------eecceEEEE
Confidence 4455557999999999997 456799999999999999999887775 877766653
No 219
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=70.90 E-value=30 Score=41.93 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=2.6
Q ss_pred CCCCCCc
Q psy3926 496 KQPKNPV 502 (512)
Q Consensus 496 ~~s~~~~ 502 (512)
.++|+..
T Consensus 652 ~~~~~~~ 658 (1021)
T PTZ00266 652 APPPNQG 658 (1021)
T ss_pred CCCCCCC
Confidence 3333333
No 220
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=70.53 E-value=9.2 Score=33.59 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCcccEEE------------eccCCCceEEEEeccHHHHHHHHHhhhCCC
Q psy3926 41 RESLTKIFSKYGKINILV------------ISPKKRGSALLEFEHADSARRAKLYELGLP 88 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v------------~~~k~~g~A~vef~~~~aa~~a~~~e~g~~ 88 (512)
...+.+.|++||+|+..+ -......-.-|-|++..+|..|+ .+.|..
T Consensus 19 ~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i 77 (100)
T PF05172_consen 19 SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTI 77 (100)
T ss_dssp HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEE
T ss_pred HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeE
Confidence 356778899999999886 12234456789999999999999 666654
No 221
>KOG1457|consensus
Probab=70.18 E-value=7.6 Score=39.02 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCC--ceEEEEEcCHHHHHHHHHh
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKR--GSALLEFEHADSARRAKLY 471 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kk--g~A~V~F~s~~~A~~Ai~~ 471 (512)
.+.|||.|+.+|+.|--..-+.|. .+. .-||++|++++.|..|+.+
T Consensus 220 ~~~~ed~l~~~~~~~~gf~~l~~~-~~~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 220 PNCTEDELKQLLSRYPGFHILKIR-ARGGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEe-cCCCcceEeecHHHHHHHHHHHHH
Confidence 469999999999999766444443 233 4599999999999999975
No 222
>KOG2135|consensus
Probab=69.78 E-value=3.1 Score=45.55 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHH-HHHHHhhhCCCCCCcEEeecCCCccc
Q psy3926 37 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSA-RRAKLYELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa-~~a~~~e~g~~~nPl~~~~l~~~~~~ 103 (512)
|+=+-++|..=|-+||.|.++-|.-. --.|||=|.|...| +.+..-+--+-+-+|+|-|..|.+.+
T Consensus 383 glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~~t 449 (526)
T KOG2135|consen 383 GLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSPVT 449 (526)
T ss_pred CCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhccccceecCceeEEEEecCCccc
Confidence 56788999999999999999987533 34799999999999 44443455555567999999986544
No 223
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=69.69 E-value=6.7 Score=38.09 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=40.9
Q ss_pred CHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCC
Q psy3926 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~ 487 (512)
..+.|+++|..|+.+..+..++ +-+..+|+|.+.++|.+|... +..+.+..+.|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4688999999999998887765 478999999999999999863 3445566788877753
No 224
>KOG2891|consensus
Probab=69.59 E-value=3.3 Score=42.59 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=31.0
Q ss_pred CcceEEEEeecCCCC--CCCCHHHHHHHHhhcCcccEEEe
Q psy3926 22 NYRLRIRWKSSSTDT--DVYTRESLTKIFSKYGKINILVI 59 (512)
Q Consensus 22 ~~~lk~~Wk~~~~~~--~~Y~~~~l~~~f~kyG~v~~~v~ 59 (512)
..+|-+||=|-++|. .--+++.|++.|.+||.|-+|-|
T Consensus 154 la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 154 LAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred ecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 457889999988773 12468999999999999998865
No 225
>KOG0226|consensus
Probab=69.59 E-value=4.6 Score=41.15 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=50.9
Q ss_pred ceeEEEeecCC-----CCCC-CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCC
Q psy3926 411 YRLRIRWKSSS-----TDTD-VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPN 477 (512)
Q Consensus 411 ~~lkVKWk~~~-----~~~~-~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~ 477 (512)
..-.+.|+..- ++.| .++.++|...|.+|-.-....++++ .+|++||.|.+..++..|+.. +.-..+
T Consensus 180 dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 180 DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred CcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 34466776542 1112 4889999999999987766666654 389999999999999999974 333344
Q ss_pred CceEE
Q psy3926 478 CPLTL 482 (512)
Q Consensus 478 ~pL~V 482 (512)
.||+.
T Consensus 260 rpikl 264 (290)
T KOG0226|consen 260 RPIKL 264 (290)
T ss_pred chhHh
Confidence 56654
No 226
>KOG0128|consensus
Probab=69.19 E-value=2.8 Score=48.75 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=44.6
Q ss_pred CCCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926 426 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY 484 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w 484 (512)
.=|.+.|+.|++.+|.+.++.+.. +-+|.|+|.|.+..+|..++.. ..+.....+.|.-
T Consensus 747 ~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 747 QGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred CCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 458899999999999999987654 3389999999999999999853 3333334444433
No 227
>KOG4210|consensus
Probab=67.32 E-value=4.3 Score=41.94 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r 491 (512)
..+++|+|...|..+|.|..|.+... -+|+|+|.|.+...+..|+.. .-.....|+.|.+..+.+.+
T Consensus 195 f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 195 FSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred cccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCccc
Confidence 47999999999999999999988753 389999999999999999873 22334467888887766655
No 228
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=66.94 E-value=17 Score=29.26 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHhhcc----CCeeEEEEccCCCceEEEEEcCHHHHHHHHH
Q psy3926 425 DVYTRESLTKIFSKY----GKINILVISPKKRGSALLEFEHADSARRAKL 470 (512)
Q Consensus 425 ~~~te~~L~~iFs~f----G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~ 470 (512)
++++.+++..+|..| |+. .|.-+.+ .+|-|+|.+...|.+|+.
T Consensus 14 d~lsT~dI~~y~~~y~~~~~~~-~IEWIdD--tScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 14 DELSTDDIKAYFSEYFDEEGPF-RIEWIDD--TSCNVVFKDEETAARALV 60 (62)
T ss_pred CCCCHHHHHHHHHHhcccCCCc-eEEEecC--CcEEEEECCHHHHHHHHH
Confidence 468999999999999 543 5655544 599999999999999985
No 229
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=66.79 E-value=11 Score=32.25 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
+-..+|..+|+.||.|. |.-+. -.+|+|.....+.|..|+..
T Consensus 20 WK~~DI~qlFspfG~I~-VsWi~--dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 20 WKTSDIYQLFSPFGQIY-VSWIN--DTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp --HHHHHHHCCCCCCEE-EEEEC--TTEEEEEECCCHHHHHHHHH
T ss_pred hhhhhHHHHhccCCcEE-EEEEc--CCcEEEEeecHHHHHHHHHH
Confidence 55678999999999993 43333 35999999999999988753
No 230
>KOG0724|consensus
Probab=66.73 E-value=6.1 Score=41.20 Aligned_cols=56 Identities=38% Similarity=0.453 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926 263 DCSEQDIRSAYRKKALKCHPDKNPD----DKKAIETFHLLSKAIEVLLDKSARAAYDSVI 318 (512)
Q Consensus 263 ~As~~eIKkAYRkLa~k~HPDk~~~----~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 318 (512)
.++..+|..+|+..++.+||++... .-...+.|..|.+||.+|.+...|...|..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3577889999999999999998741 1234578999999999999977666666655
No 231
>KOG0120|consensus
Probab=64.98 E-value=6.3 Score=43.80 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~ 487 (512)
+..+++.+.++...||++....++++ .+||||-+|-+..-...|+.. +..+.+..|.|+.|-.
T Consensus 299 ~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 299 LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 57899999999999999998877754 489999999999999889864 5666778899987754
No 232
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=63.87 E-value=25 Score=30.73 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=45.4
Q ss_pred CCCHHHHHHHhhc--cCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCC----CCceEEEecCC
Q psy3926 426 VYTRESLTKIFSK--YGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLP----NCPLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~--fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~----~~pL~V~wa~~ 487 (512)
.+|.+.|.+++.. .|..+=+.++-| ..|+|||-|.+.+.|..-.+. +..+. ..+..|.||+-
T Consensus 12 ~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAri 86 (97)
T PF04059_consen 12 KYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARI 86 (97)
T ss_pred CCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHh
Confidence 5899998888743 366666666643 379999999999999988763 44333 35678888864
No 233
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=63.83 E-value=13 Score=36.17 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=32.8
Q ss_pred CHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh
Q psy3926 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
+.+.|+.+|.+||++..++.-++ =|+.||.|.+.++|..|...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~ 50 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQL 50 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHT
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHH
Confidence 46789999999999999875433 46899999999999988853
No 234
>KOG0163|consensus
Probab=63.11 E-value=59 Score=38.16 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=6.1
Q ss_pred CCCCCCcccccc
Q psy3926 123 PRDSDSKNVESS 134 (512)
Q Consensus 123 ~~~~~~~~~e~~ 134 (512)
+..|.+.+||-|
T Consensus 671 N~kM~~~~FeGs 682 (1259)
T KOG0163|consen 671 NSKMIDRHFEGS 682 (1259)
T ss_pred ccccccccccHH
Confidence 445555555543
No 235
>PF13446 RPT: A repeated domain in UCH-protein
Probab=62.79 E-value=13 Score=29.17 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHH
Q psy3926 253 DLYGLLELTIDCSEQDIRSAYRKKAL 278 (512)
Q Consensus 253 d~YeiLgv~~~As~~eIKkAYRkLa~ 278 (512)
+-|++|||+++.+.+.|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998776
No 236
>KOG2202|consensus
Probab=62.63 E-value=4.1 Score=41.41 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh
Q psy3926 41 RESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~ 83 (512)
+|.++++-.|||+|+.++|+. --.|-+-|.|..-++|+.|++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~ 129 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALED 129 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHH
Confidence 566677777999999998876 4568999999999999999943
No 237
>KOG2068|consensus
Probab=62.51 E-value=7.3 Score=41.00 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=42.3
Q ss_pred EEeecCCCCCCCCCHHHHH--HHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHHh
Q psy3926 415 IRWKSSSTDTDVYTRESLT--KIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 415 VKWk~~~~~~~~~te~~L~--~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~~ 471 (512)
+.|....++ ..-+|..|. +.|.+||.|..|++.++. ...++|+|...++|..||..
T Consensus 79 lvyvvgl~~-~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 79 LVYVVGLPL-DLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred hhhhhCCCc-cccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH
Confidence 445544322 246778887 789999999999998743 34599999999999999973
No 238
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=59.07 E-value=58 Score=31.90 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=17.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHH
Q psy3926 326 IRNSKLDATRKKFKEDLERREKEAE 350 (512)
Q Consensus 326 ~r~~~~~~~rrk~~eeLe~rE~e~~ 350 (512)
.+.+.+...|++|++++++..++++
T Consensus 80 ~rqEa~eaAR~RmQEE~dakA~~~k 104 (190)
T PF06936_consen 80 RRQEAMEAARRRMQEELDAKAEEYK 104 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888888887765554
No 239
>KOG4574|consensus
Probab=58.00 E-value=8.7 Score=44.92 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~~~~ 490 (512)
.+.+-..|-.+|+.||.|.++..+.+ -..|+|+|.+.++|..|... +.-..+.|-+|.+|+.-|.
T Consensus 308 v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 308 VNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred ccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 46677889999999999999998765 56999999999999999864 3444557899999986443
No 240
>KOG0112|consensus
Probab=55.63 E-value=16 Score=43.15 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=52.4
Q ss_pred CCC-HHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCCCccc
Q psy3926 426 VYT-RESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 426 ~~t-e~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~~~~r 491 (512)
.++ ...|...|..||.|..|.+-.. --+|.|.|++...|+.|+.. ..|.++.+|.|.++.++-..
T Consensus 465 ~w~p~~~l~r~fd~fGpir~Idy~hg-q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 465 PWSPVSRLNREFDRFGPIRIIDYRHG-QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred CCChHHHHHHHhhccCcceeeecccC-CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 444 6889999999999998877432 46899999999999999974 56777788999999865333
No 241
>KOG0115|consensus
Probab=53.53 E-value=14 Score=37.74 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=48.8
Q ss_pred CcceeEEEeecCCCCC-----CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh
Q psy3926 409 ENYRLRIRWKSSSTDT-----DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~-----~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~ 471 (512)
.-+.|+|++..+.... -..+-|.|..-|+.||+|+.-|++-|. -+-.+|+|+..-+|.+|...
T Consensus 20 ~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 20 KGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred CCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHH
Confidence 4567778877764321 346778999999999999987777543 57799999999999999864
No 242
>KOG1995|consensus
Probab=52.40 E-value=16 Score=38.91 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=53.4
Q ss_pred ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeE--------EEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCC
Q psy3926 411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINI--------LVISPKK-----RGSALLEFEHADSARRAKL--YELGL 475 (512)
Q Consensus 411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~--------V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~ 475 (512)
+.-..-|-... ..++++|.+.|.+-|.|.. |.|-+++ ||.|.|.|.+..+|..||. +...+
T Consensus 66 ~~ti~v~g~~d----~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 66 NETIFVWGCPD----SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccceeeccCc----cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 33455677653 5889999999998887732 2222222 8999999999999999996 34445
Q ss_pred CCCceEEEecCCCc
Q psy3926 476 PNCPLTLNYLNPDV 489 (512)
Q Consensus 476 ~~~pL~V~wa~~~~ 489 (512)
..++|+|..|...+
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 55888887776544
No 243
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.76 E-value=2.7e+02 Score=32.95 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=9.0
Q ss_pred HHHHHHHHHccChh
Q psy3926 296 HLLSKAIEVLLDKS 309 (512)
Q Consensus 296 ~~I~~AYevLsDp~ 309 (512)
..|..|.++|++..
T Consensus 502 ~ii~~A~~~~~~~~ 515 (782)
T PRK00409 502 NIIEEAKKLIGEDK 515 (782)
T ss_pred HHHHHHHHHHhhhh
Confidence 35677777776543
No 244
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=49.27 E-value=33 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHc
Q psy3926 261 TIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVL 305 (512)
Q Consensus 261 ~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevL 305 (512)
+++|+.+||+.|+.++..+|- +|+ ..-..|..||+.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHH
Confidence 478999999999999999992 333 3344566666543
No 245
>KOG4209|consensus
Probab=48.25 E-value=26 Score=35.20 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=50.3
Q ss_pred EEEeecCCCCCCCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCCC-CCCcEEeecC
Q psy3926 27 IRWKSSSTDTDVYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGLP-NCPLTLNYLN 98 (512)
Q Consensus 27 ~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~~-~nPl~~~~l~ 98 (512)
..|-..-+- +-+-+.+...|+-+|.|..|.|. ..-||.|-|||.+.+.++.|++..-|.. .-+++++|.-
T Consensus 103 sv~v~nvd~--~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 103 SVWVGNVDF--LVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred eEEEecccc--ccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 455553322 34455599999999999866553 2458999999999999999999444444 4448888875
No 246
>KOG4661|consensus
Probab=47.58 E-value=1.4e+02 Score=34.04 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCcccEE-Ee-c---cCCCceEEEEeccHHHHHHHHH
Q psy3926 41 RESLTKIFSKYGKINIL-VI-S---PKKRGSALLEFEHADSARRAKL 82 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~-v~-~---~k~~g~A~vef~~~~aa~~a~~ 82 (512)
+.+|..||+|||.|+.- || . ..-++-.+|-|.|...|-..+.
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~ 465 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIE 465 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHH
Confidence 67899999999999875 33 3 3444567888888888877764
No 247
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.13 E-value=3.1e+02 Score=32.45 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=8.2
Q ss_pred HHHHHHHHHccCh
Q psy3926 296 HLLSKAIEVLLDK 308 (512)
Q Consensus 296 ~~I~~AYevLsDp 308 (512)
..|..|.++|++.
T Consensus 497 ~ii~~A~~~~~~~ 509 (771)
T TIGR01069 497 FIIEQAKTFYGEF 509 (771)
T ss_pred HHHHHHHHHHHhh
Confidence 3566777777643
No 248
>KOG4285|consensus
Probab=46.39 E-value=37 Score=35.59 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=38.0
Q ss_pred CHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
....|-..|++||.|.+.+.. .+...-.|-|.+...|.+|+..
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh
Confidence 457788999999999999887 5678999999999999999975
No 249
>KOG3654|consensus
Probab=46.10 E-value=65 Score=36.03 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=6.1
Q ss_pred ccCCCCCCCC
Q psy3926 503 FSNIDFSGPR 512 (512)
Q Consensus 503 ~~~~d~~~~~ 512 (512)
.+..||.||+
T Consensus 561 as~~eytgPk 570 (708)
T KOG3654|consen 561 ASVKEYTGPK 570 (708)
T ss_pred CccccccCcc
Confidence 4556677764
No 250
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=45.41 E-value=28 Score=37.02 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=34.2
Q ss_pred HHHHHhhcCcccEEEeccCC------CceE--EEEeccHHHHHHHHHhhhCC
Q psy3926 44 LTKIFSKYGKINILVISPKK------RGSA--LLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 44 l~~~f~kyG~v~~~v~~~k~------~g~A--~vef~~~~aa~~a~~~e~g~ 87 (512)
=.++|.+||.|.-|||.+|- .|-| -|-|.++++|..+++.--|-
T Consensus 137 ~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 137 RHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred chhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 35899999999999997654 1223 78999999999999654443
No 251
>KOG4574|consensus
Probab=45.21 E-value=58 Score=38.49 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh----hhCCCCCCcEEeecCCCcccccc------c
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPDVEREES------R 107 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~----e~g~~~nPl~~~~l~~~~~~~~~------~ 107 (512)
+-+---|..++++||.|.....-+. --.|+|||.+.+.|..|... |+-....|-+|..-.+-+-..++ +
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ln~~g~n 387 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPPLNLTGYN 387 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCCcCccccc
Confidence 5667789999999999998876443 35899999999999999875 44444557777765522222111 0
Q ss_pred CCCCCCcccc------ccCCCCCCCCCccccccCCCC
Q psy3926 108 KQPKNPVFSN------IDFSGPRDSDSKNVESSNGSD 138 (512)
Q Consensus 108 ~~~~~~~~~~------~~~~~~~~~~~~~~e~~~~~~ 138 (512)
-|++..++-+ -.|.++.......||-++-+.
T Consensus 388 n~~~~~~l~e~ln~g~~n~q~~gsl~~p~f~~~s~~~ 424 (1007)
T KOG4574|consen 388 NFNHQPLLQEQLNTGLFNTQSQGSLKSPVFEQQSTSS 424 (1007)
T ss_pred CCCCCcchhhhhccccceeccCCcccccccccCcccc
Confidence 0112222222 245566677788888766543
No 252
>KOG2412|consensus
Probab=45.04 E-value=2.5e+02 Score=31.91 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=33.2
Q ss_pred cccCCCCCCCCCCC-CCCCCCCCCCCcCCCCCCCCcccccCCCceeeecccccc
Q psy3926 132 ESSNGSDSDSTPNL-FPSANKSSNIFPSADKSSNLFPTADKSSHLFPIADKSSN 184 (512)
Q Consensus 132 e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~s~~~f~~~~~~~~~ 184 (512)
+|..|+.-|..||. ||++ +-+|.++-+--+.|..+.+-.|.-++..+..+
T Consensus 11 ~s~~~~~id~epn~~fpdl---~a~~as~~~~l~~~gk~~~~~t~~~v~d~~~~ 61 (591)
T KOG2412|consen 11 KSVDGISIDPEPNWNFPDL---VAEIASVEKKLNGFGKYPQPITNTTVRDGRRG 61 (591)
T ss_pred CCcccccCCCCCCCCchhH---HHHhhhhhhhhcccCCCccHHHHHHHHhhhcc
Confidence 34444444555543 5554 34566666668899999999888888777766
No 253
>KOG1996|consensus
Probab=44.60 E-value=38 Score=35.46 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=35.1
Q ss_pred HHHHHHHhhccCCeeEEEEcc------CCCceEEEEEcCHHHHHHHHHh
Q psy3926 429 RESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~------~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
++.+.+-+.+||.|..|+|.. +.--.-||+|...++|.+|+-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd 348 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD 348 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh
Confidence 456677789999999998864 3345689999999999999864
No 254
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=42.70 E-value=41 Score=28.95 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEe
Q psy3926 41 RESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN 95 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~ 95 (512)
..+|.++|+-||.|.--.|.-. ||+|-....+.|..|+ +.... +-..+|.
T Consensus 22 ~~DI~qlFspfG~I~VsWi~dT---SAfV~l~~r~~~~~v~-~~~~~-~~~y~i~ 71 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWINDT---SAFVALHNRDQAKVVM-NTLKK-NSSYRIQ 71 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEECTT---EEEEEECCCHHHHHHH-HHHTT--SSSEEE
T ss_pred hhhHHHHhccCCcEEEEEEcCC---cEEEEeecHHHHHHHH-HHhcc-CCceEEE
Confidence 4679999999999986667544 9999999999999777 55544 2235554
No 255
>KOG0691|consensus
Probab=42.34 E-value=4.9 Score=41.89 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=54.9
Q ss_pred CcceEEEEeecCCCC---C--CCCHHHHHHHHhh--cCcccEEEeccCCCce---EEEEeccHHHHHHHHHhhhCCCCCC
Q psy3926 22 NYRLRIRWKSSSTDT---D--VYTRESLTKIFSK--YGKINILVISPKKRGS---ALLEFEHADSARRAKLYELGLPNCP 91 (512)
Q Consensus 22 ~~~lk~~Wk~~~~~~---~--~Y~~~~l~~~f~k--yG~v~~~v~~~k~~g~---A~vef~~~~aa~~a~~~e~g~~~nP 91 (512)
+..++++|++-+... . .|+...+..+.++ |++|..++..++.+|- +.+.+++...+....++|.+...+|
T Consensus 156 ~e~~~l~~e~~~~e~~~~~g~~y~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 235 (296)
T KOG0691|consen 156 TEALQLQRERFGEELLHTIGRTYSRTKALKPIKFRTSPGVSKLSEGSRAKGGALRAMWNLAAGAVALYGGQDEMEKLLEA 235 (296)
T ss_pred HHHHHHHHhhhhHHHHHhhcccchhhHhhhccccccccCcchhhhcccccchhHHHHHhhhHHHHHHHHHHHHHHhhhcc
Confidence 344455555544321 2 4555344444333 6677777777888884 5689999999999999999999999
Q ss_pred cEEeecCC
Q psy3926 92 LTLNYLNP 99 (512)
Q Consensus 92 l~~~~l~~ 99 (512)
+.++|..+
T Consensus 236 ~~~~~e~~ 243 (296)
T KOG0691|consen 236 LGEALEKR 243 (296)
T ss_pred hHHHhhhc
Confidence 99999986
No 256
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=41.81 E-value=3.2e+02 Score=26.10 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=3.6
Q ss_pred ccChhh
Q psy3926 305 LLDKSA 310 (512)
Q Consensus 305 LsDp~~ 310 (512)
|.||..
T Consensus 40 llDpa~ 45 (157)
T PF15236_consen 40 LLDPAQ 45 (157)
T ss_pred cCCHHH
Confidence 566655
No 257
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=40.91 E-value=59 Score=29.12 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCChHH----HHHHHHHHHHHHHccC
Q psy3926 262 IDCSEQDIRSAYRKKALKCHPDKNPDDKKA----IETFHLLSKAIEVLLD 307 (512)
Q Consensus 262 ~~As~~eIKkAYRkLa~k~HPDk~~~~~~a----~~~F~~I~~AYevLsD 307 (512)
+..+..+++.|.|.+-++.|||.-...|+. ++-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 345778899999999999999987655542 2344555544444443
No 258
>PTZ00121 MAEBL; Provisional
Probab=40.46 E-value=5.7e+02 Score=32.80 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.9
Q ss_pred CCCCcceEEEEeecC
Q psy3926 19 NPENYRLRIRWKSSS 33 (512)
Q Consensus 19 ~~~~~~lk~~Wk~~~ 33 (512)
+-..+-|-|.|+..+
T Consensus 612 di~~nhi~i~wk~~g 626 (2084)
T PTZ00121 612 DIPKNHIFIEWKKDG 626 (2084)
T ss_pred CCcccceEEEecccC
Confidence 455567889998865
No 259
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=40.09 E-value=60 Score=28.10 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCc-ccEEEeccCCCceEEEEeccHHHHHHHHHh---hhCCCCCCcEEeec
Q psy3926 42 ESLTKIFSKYGK-INILVISPKKRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYL 97 (512)
Q Consensus 42 ~~l~~~f~kyG~-v~~~v~~~k~~g~A~vef~~~~aa~~a~~~---e~g~~~nPl~~~~l 97 (512)
-.|++|+...|- |..| + .|+|||=|.+.++|+.|.+- |--+ .|-+.|++.
T Consensus 21 ~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVf-G~kI~v~~~ 74 (90)
T PF11608_consen 21 NRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVF-GNKISVSFS 74 (90)
T ss_dssp HHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SS-SS--EEESS
T ss_pred HHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccc-cceEEEEEc
Confidence 468899999875 4433 2 48999999999999999874 3322 467777765
No 260
>PTZ00121 MAEBL; Provisional
Probab=39.69 E-value=2.3e+02 Score=36.04 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHhhcC---cccEEEeccCCCceEE
Q psy3926 38 VYTRESLTKIFSKYG---KINILVISPKKRGSAL 68 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG---~v~~~v~~~k~~g~A~ 68 (512)
.|+.+.|.+|---|= ...+|-|.-.+-|-||
T Consensus 691 ~~n~~fLNEI~tG~Lnk~~~~~vEip~~kSG~AM 724 (2084)
T PTZ00121 691 NFNLEFLNEIHTGYLGKIFIKDVEIPYDKSGIAM 724 (2084)
T ss_pred hhhHHHHHHHHhhhcccccccceeecccchhhHH
Confidence 477777777732221 1223334445555554
No 261
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=38.65 E-value=99 Score=32.39 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=47.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC------------CceEEEEEcCHHHHHHHHH--------hhcCCCCCceEEEec
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK------------RGSALLEFEHADSARRAKL--------YELGLPNCPLTLNYL 485 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k------------kg~A~V~F~s~~~A~~Ai~--------~~~~~~~~pL~V~wa 485 (512)
.++-..+-.-|.+||+|++|.+..+. ..+.++.|-+.+.|..--. -.+.+.+..|+|+|.
T Consensus 26 sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV 105 (309)
T PF10567_consen 26 SIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFV 105 (309)
T ss_pred cccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEE
Confidence 46666677778999999999988643 5789999999998865532 256777888988877
Q ss_pred C
Q psy3926 486 N 486 (512)
Q Consensus 486 ~ 486 (512)
.
T Consensus 106 ~ 106 (309)
T PF10567_consen 106 S 106 (309)
T ss_pred E
Confidence 5
No 262
>KOG4676|consensus
Probab=36.83 E-value=29 Score=37.49 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=48.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~ 486 (512)
..|.|.++.||...|.|..+.+..+ -...|||-|.+...+..|-.- .+.+.+..|.|--+.
T Consensus 18 sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 18 SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 5889999999999999999876542 257899999999999888543 677788777665443
No 263
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=35.90 E-value=57 Score=30.73 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=44.2
Q ss_pred hhhhhhcCCCCcceEEEEeecCCCC-CCCCHH---HHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh---h
Q psy3926 12 SELNAKLNPENYRLRIRWKSSSTDT-DVYTRE---SLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY---E 84 (512)
Q Consensus 12 ~~~~~~~~~~~~~lk~~Wk~~~~~~-~~Y~~~---~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~---e 84 (512)
+++=+.+++...-+-|+=....+++ ..|+++ .|.+.|..||+|. || +---|.-+|-|.+...|..|+.. +
T Consensus 17 ~eVi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~Gevv-Lv--Rfv~~~mwVTF~dg~sALaals~dg~~ 93 (146)
T PF08952_consen 17 EEVISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVV-LV--RFVGDTMWVTFRDGQSALAALSLDGIQ 93 (146)
T ss_dssp ---S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-EC-EE--EEETTCEEEEESSCHHHHHHHHGCCSE
T ss_pred HHHHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceE-EE--EEeCCeEEEEECccHHHHHHHccCCcE
Confidence 5555555777777777776633344 357653 5667777889876 33 22336899999999999999974 3
Q ss_pred hCCCCCCcEEe
Q psy3926 85 LGLPNCPLTLN 95 (512)
Q Consensus 85 ~g~~~nPl~~~ 95 (512)
+| ...|+|+
T Consensus 94 v~--g~~l~i~ 102 (146)
T PF08952_consen 94 VN--GRTLKIR 102 (146)
T ss_dssp ET--TEEEEEE
T ss_pred EC--CEEEEEE
Confidence 32 2456665
No 264
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=35.74 E-value=1e+02 Score=25.12 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYEL 473 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~ 473 (512)
.++-.+++..+..|+-. .|..++.|+ +|+|.+..+|++....+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tGf-YIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTGF-YIVFNDSKEAERCFRAED 54 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCEE-EEEECChHHHHHHHHhcC
Confidence 58899999999999966 344555665 789999999999987543
No 265
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.57 E-value=1.8e+02 Score=33.20 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=6.4
Q ss_pred eEEEEEcCHH
Q psy3926 454 SALLEFEHAD 463 (512)
Q Consensus 454 ~A~V~F~s~~ 463 (512)
+++.+|...+
T Consensus 141 ~GVlEF~A~E 150 (567)
T PLN03086 141 SGVLEFTAEE 150 (567)
T ss_pred EEEEEEEcCC
Confidence 6777776544
No 266
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.45 E-value=6.7e+02 Score=27.68 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy3926 366 ILQQEIDRLRKEGSIRLQ 383 (512)
Q Consensus 366 ~~~~eierLRee~~r~re 383 (512)
.+..+|.+++.+..+.++
T Consensus 235 ~L~~~Ias~e~~aA~~re 252 (420)
T COG4942 235 RLKNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666655444333
No 267
>KOG3054|consensus
Probab=33.82 E-value=3.8e+02 Score=27.57 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=17.6
Q ss_pred cCCeeEEEEccCCCceEEEEEcCHHHHHHHHH
Q psy3926 439 YGKINILVISPKKRGSALLEFEHADSARRAKL 470 (512)
Q Consensus 439 fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~ 470 (512)
-|.|..| ..|+..+-+|..+...+..+-|+
T Consensus 241 eg~ltGV--mDDRGKfIYIS~eEl~AVAkfIk 270 (299)
T KOG3054|consen 241 EGLLTGV--MDDRGKFIYISMEELAAVAKFIK 270 (299)
T ss_pred hhhheee--ecCCCceEEecHHHHHHHHHHHH
Confidence 4555444 24555677777666666655554
No 268
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.29 E-value=4.9e+02 Score=30.85 Aligned_cols=9 Identities=0% Similarity=-0.223 Sum_probs=5.5
Q ss_pred CceEEEEEc
Q psy3926 452 RGSALLEFE 460 (512)
Q Consensus 452 kg~A~V~F~ 460 (512)
++.+.|.+.
T Consensus 648 ~~~~~V~~g 656 (771)
T TIGR01069 648 GNKWNVTVG 656 (771)
T ss_pred CCeEEEEEC
Confidence 456767654
No 269
>KOG2412|consensus
Probab=31.09 E-value=4.1e+02 Score=30.25 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=4.5
Q ss_pred CHHHHHHHh
Q psy3926 428 TRESLTKIF 436 (512)
Q Consensus 428 te~~L~~iF 436 (512)
+-.+|+.||
T Consensus 353 ~~q~L~qI~ 361 (591)
T KOG2412|consen 353 NGQVLRQIF 361 (591)
T ss_pred cHHHHHHHH
Confidence 344455555
No 270
>KOG2891|consensus
Probab=30.28 E-value=6.6e+02 Score=26.35 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcCcccEEEecc
Q psy3926 41 RESLTKIFSKYGKINILVISP 61 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~~ 61 (512)
-|....+ -|-|-++-+++
T Consensus 52 wdlmerl---k~aid~~q~ds 69 (445)
T KOG2891|consen 52 WDLMERL---KGAIDNHQFDS 69 (445)
T ss_pred HHHHHHH---Hhhcccccccc
Confidence 3444444 56677765543
No 271
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=30.14 E-value=3.2e+02 Score=30.71 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=12.9
Q ss_pred CcccccC-CCceeeeccccccccccc
Q psy3926 165 LFPTADK-SSHLFPIADKSSNLFPSA 189 (512)
Q Consensus 165 ~f~~~~s-~~~f~~~~~~~~~ll~~~ 189 (512)
-|.|++. ..|+..|++...++.+-.
T Consensus 95 aygY~~~~a~~lA~fit~YNAv~R~~ 120 (489)
T PF05262_consen 95 AYGYSDEDAETLATFITIYNAVYRGD 120 (489)
T ss_pred hcCCChhhHHHHHHHHHHHHHHHcCC
Confidence 4777654 445555555444444433
No 272
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.94 E-value=5.6e+02 Score=30.37 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=5.2
Q ss_pred CceEEEEEc
Q psy3926 452 RGSALLEFE 460 (512)
Q Consensus 452 kg~A~V~F~ 460 (512)
++.+.|.+.
T Consensus 660 ~~~~~V~~g 668 (782)
T PRK00409 660 DKEAIVQAG 668 (782)
T ss_pred CCeEEEEEC
Confidence 456666643
No 273
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.24 E-value=52 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCC--CceEEEEeccH
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHA 74 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~--~g~A~vef~~~ 74 (512)
|-+.+.|+..|..|+.+....+-.+. .|.|||+|..-
T Consensus 28 g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 28 GMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp ---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred ccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 67889999999999999755554333 58999999863
No 274
>KOG4364|consensus
Probab=28.67 E-value=3e+02 Score=32.06 Aligned_cols=13 Identities=8% Similarity=0.335 Sum_probs=6.1
Q ss_pred cccccCCCceeee
Q psy3926 166 FPTADKSSHLFPI 178 (512)
Q Consensus 166 f~~~~s~~~f~~~ 178 (512)
|+..+++|.+-.|
T Consensus 74 ~~~~~~~n~~~~L 86 (811)
T KOG4364|consen 74 FSECSSLNSMVAL 86 (811)
T ss_pred ceeccccccccch
Confidence 4444455544443
No 275
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.52 E-value=56 Score=29.38 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHH-HHHHHH
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHAD-SARRAK 469 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~-~A~~Ai 469 (512)
..+-..|.+.|+.|++++-..+.... .|+|+|+|...- .-..|+
T Consensus 28 g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 28 GMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp ---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 57779999999999998655444433 689999998754 334444
No 276
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.61 E-value=1e+03 Score=28.02 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHccCh
Q psy3926 289 KKAIETFHLLSKAIEVLLDK 308 (512)
Q Consensus 289 ~~a~~~F~~I~~AYevLsDp 308 (512)
+...+-++.+.+|.++|...
T Consensus 532 p~~~E~l~lL~~a~~vlree 551 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREE 551 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 33567788888998888643
No 277
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=26.83 E-value=1.5e+02 Score=30.96 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=7.2
Q ss_pred HHHHHHHhhcCccc
Q psy3926 42 ESLTKIFSKYGKIN 55 (512)
Q Consensus 42 ~~l~~~f~kyG~v~ 55 (512)
..|.+=|+..|+-.
T Consensus 41 ~~L~~~Fa~VG~~~ 54 (321)
T PF07946_consen 41 PLLESNFALVGDDG 54 (321)
T ss_pred HHHHhhccccCCCC
Confidence 34555555555533
No 278
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.75 E-value=7.8e+02 Score=26.05 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=6.2
Q ss_pred EcCHHHHHHHHH
Q psy3926 459 FEHADSARRAKL 470 (512)
Q Consensus 459 F~s~~~A~~Ai~ 470 (512)
|.......+|+.
T Consensus 287 y~~~~~~~RaL~ 298 (309)
T TIGR00570 287 YTSNLACERALQ 298 (309)
T ss_pred cCHHHHHHHHHH
Confidence 444555555554
No 279
>KOG2416|consensus
Probab=26.46 E-value=77 Score=36.13 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=52.9
Q ss_pred CCCcceeEEEeecCCCCCCCCCHHHHHHHhhc-cCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCC---Cce
Q psy3926 407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSK-YGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPN---CPL 480 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~-fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~---~pL 480 (512)
....|.|-|.=-.. .||.-.|++++.+ -|.|++..| .+-|.-|||.|.+.++|.+-+. +++.|+. ..|
T Consensus 441 ~~~SnvlhI~nLvR-----PFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVR-----PFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccc-----cchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34566777765555 4999999999985 456666644 3347899999999999977654 4666665 347
Q ss_pred EEEecC
Q psy3926 481 TLNYLN 486 (512)
Q Consensus 481 ~V~wa~ 486 (512)
.|.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 777774
No 280
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.42 E-value=4.5e+02 Score=27.59 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=4.3
Q ss_pred cCCeeEEEE
Q psy3926 439 YGKINILVI 447 (512)
Q Consensus 439 fG~I~~V~i 447 (512)
||.|..+.+
T Consensus 150 fGTINGlRL 158 (314)
T PF04111_consen 150 FGTINGLRL 158 (314)
T ss_dssp EEEETTEEE
T ss_pred eeeECCeee
Confidence 455544444
No 281
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=26.05 E-value=55 Score=34.74 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=51.6
Q ss_pred cccccccch---hhhhcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHcc
Q psy3926 233 ISWSFPAIP---LSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDK-NPDDKKAIETFHLLSKAIEVLL 306 (512)
Q Consensus 233 ~~w~~~~~~---~~~~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk-~~~~~~a~~~F~~I~~AYevLs 306 (512)
..|..++++ ++|...+....++|+.|||++..-..++-+.-...+.+.-|-. +-++|.-......+..++..|.
T Consensus 228 kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 228 RLWCRFFLLSVFATMYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred HHHHHHHHHHHHHHheehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 445555554 7788888889999999999998766666666677777888876 3445655555555665555554
No 282
>KOG2002|consensus
Probab=25.98 E-value=1.3e+03 Score=28.32 Aligned_cols=10 Identities=50% Similarity=0.414 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q psy3926 291 AIETFHLLSK 300 (512)
Q Consensus 291 a~~~F~~I~~ 300 (512)
|.+.|..|+.
T Consensus 788 a~r~F~~ls~ 797 (1018)
T KOG2002|consen 788 ARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHh
Confidence 3345555543
No 283
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=25.70 E-value=1.1e+02 Score=26.79 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=38.9
Q ss_pred EEEeecCCCCCCCCHHHHHHHHhhcCcccEEEecc---------------CCCceEEEEeccHHHHHH
Q psy3926 27 IRWKSSSTDTDVYTRESLTKIFSKYGKINILVISP---------------KKRGSALLEFEHADSARR 79 (512)
Q Consensus 27 ~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~~~---------------k~~g~A~vef~~~~aa~~ 79 (512)
..|+.... .+-+.+.|..++..++.+.-|||.+ +++|-.+..|.|..||..
T Consensus 29 ~~w~~~~~--~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~t 94 (110)
T PF04430_consen 29 RDWKVKSP--HDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACRT 94 (110)
T ss_dssp EEEHHSST--TCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHHH
T ss_pred cCcCCCCc--ccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHHH
Confidence 67875443 3689999999999999999888754 367999999999999873
No 284
>KOG3152|consensus
Probab=25.64 E-value=38 Score=34.70 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC-----------------CCceEEEEEcCHHHHHHHHH
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK-----------------KRGSALLEFEHADSARRAKL 470 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~-----------------kkg~A~V~F~s~~~A~~Ai~ 470 (512)
.|+...|++||+.||.|-.|.+-.. .+.-+.|+|.+...|.....
T Consensus 85 ~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe 146 (278)
T KOG3152|consen 85 YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE 146 (278)
T ss_pred ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 6999999999999999999988631 14558999999999987754
No 285
>KOG4364|consensus
Probab=24.91 E-value=6e+02 Score=29.75 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=12.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHH
Q psy3926 253 DLYGLLELTIDCSEQDIRSAYRKK 276 (512)
Q Consensus 253 d~YeiLgv~~~As~~eIKkAYRkL 276 (512)
+.-..+--+..++...|-+.+|+.
T Consensus 232 ~~s~~~pk~tk~p~~l~~KQ~rk~ 255 (811)
T KOG4364|consen 232 NSSEMAPKDTKRPEKLLLKQLRKN 255 (811)
T ss_pred CCCcCCCCCCCcchhHHHHHHHHh
Confidence 333334344455666666666653
No 286
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.28 E-value=7.5e+02 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q psy3926 366 ILQQEIDRLRKEGSIRLQEE 385 (512)
Q Consensus 366 ~~~~eierLRee~~r~ree~ 385 (512)
+.++++++++++.....+.+
T Consensus 94 ~A~~ea~~~~~~a~~~ie~E 113 (250)
T PRK14474 94 EAREDVATARDEWLEQLERE 113 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444443333
No 287
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=24.27 E-value=1.9e+02 Score=29.47 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhcc-cCCC-CCcceeEEEeecC
Q psy3926 360 NKSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKEL-SELN-AKLN-PENYRLRIRWKSS 420 (512)
Q Consensus 360 ~~~~~e~~~~eierLRee~~r~ree~q~~~~~~~~~e~~~-~~~~-~~~~-~~~~~lkVKWk~~ 420 (512)
+++....+-+||+++|++.......+++...++..+.+.. -..+ +-.+ ....++|=+|...
T Consensus 144 deDd~~~Ll~ELekIKkER~ee~~~~e~~~~~~~~~~~~~~~~~~NpLl~~~~~~~~kr~W~dd 207 (244)
T PF04889_consen 144 DEDDTAALLRELEKIKKERAEEKARKEEEKAEEEEKEREENILSGNPLLNASGDFKVKRRWDDD 207 (244)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCccccCCccc
Confidence 3445568889999999986644333322221222222222 1122 2222 3456788888743
No 288
>KOG4307|consensus
Probab=23.89 E-value=74 Score=36.97 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHhhccCCeeE-EEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCccccc-----ccCCCCCCc--
Q psy3926 431 SLTKIFSKYGKINI-LVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREE-----SRKQPKNPV-- 502 (512)
Q Consensus 431 ~L~~iFs~fG~I~~-V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~r~~-----~~~~s~~~~-- 502 (512)
+||.+|+-.---+. |.|++..-|-|||.|.|.++|..|+-.+-+..-..-.--.+..+.+-.. ++.....+.
T Consensus 18 DIR~FFSGL~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLSSksEmq~vIe~~rkaaa~a~~~~ 97 (944)
T KOG4307|consen 18 DIRTFFSGLKIPDGGVHIIGGEEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLSSKSEMQSVIEARRKAAANATYTS 97 (944)
T ss_pred HHHHhhcccccCCCceEEecccccceEEEecccchhhhhhhhcccceecceEEEEeccHHHHHHHHHHHHHHHhcCCccC
Q ss_pred -ccCCCCCCC
Q psy3926 503 -FSNIDFSGP 511 (512)
Q Consensus 503 -~~~~d~~~~ 511 (512)
+.++.|+||
T Consensus 98 Pv~~ak~~gP 107 (944)
T KOG4307|consen 98 PVYKAKYVGP 107 (944)
T ss_pred CccccccCCC
No 289
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.74 E-value=5.9e+02 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q psy3926 368 QQEIDRLRKEGSIRLQEEIK 387 (512)
Q Consensus 368 ~~eierLRee~~r~ree~q~ 387 (512)
+++.+++.++.....+.+++
T Consensus 113 ~~ea~~~~~~a~~~i~~ek~ 132 (156)
T CHL00118 113 QKYIDSLLNEATKQLEAQKE 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 290
>KOG2072|consensus
Probab=23.25 E-value=8.2e+02 Score=29.47 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=16.4
Q ss_pred eEEEEeecCCCCCCCCHHHHHHHHhhcCc
Q psy3926 25 LRIRWKSSSTDTDVYTRESLTKIFSKYGK 53 (512)
Q Consensus 25 lk~~Wk~~~~~~~~Y~~~~l~~~f~kyG~ 53 (512)
.+|=|+++. .=|-+.-|.++|+=|-+
T Consensus 282 ~~VF~~sgn---~LfHAaAw~k~f~l~k~ 307 (988)
T KOG2072|consen 282 AKVFWKSGN---PLFHAAAWLKLFKLYKN 307 (988)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHH
Confidence 356688732 23677777777777733
No 291
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.66 E-value=1.3e+02 Score=24.49 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCeeEEEEc
Q psy3926 430 ESLTKIFSKYGKINILVIS 448 (512)
Q Consensus 430 ~~L~~iFs~fG~I~~V~i~ 448 (512)
..||..|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877765
No 292
>KOG0129|consensus
Probab=22.39 E-value=1.4e+02 Score=33.51 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC--------Cc---eEEEEEcCHHHHHHHHHh
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK--------RG---SALLEFEHADSARRAKLY 471 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k--------kg---~A~V~F~s~~~A~~Ai~~ 471 (512)
++||+.|...|..||.| .|.=..+. +| |+|+.|++..+...-+..
T Consensus 270 dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 270 DITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
No 293
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=22.14 E-value=89 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCCceEEEEeccHHHHHHHHHh--hhC-CCCCCcEEe
Q psy3926 62 KKRGSALLEFEHADSARRAKLY--ELG-LPNCPLTLN 95 (512)
Q Consensus 62 k~~g~A~vef~~~~aa~~a~~~--e~g-~~~nPl~~~ 95 (512)
...|.|+|...+.+.|++.... ..| ....||+++
T Consensus 45 ~~~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~t 81 (82)
T PF02617_consen 45 HREGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRAT 81 (82)
T ss_dssp HHHSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred hHcCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 4569999999999999987653 333 344588875
No 294
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=21.93 E-value=94 Score=32.68 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=49.0
Q ss_pred cccccccch---hhhhcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHc
Q psy3926 233 ISWSFPAIP---LSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDK-NPDDKKAIETFHLLSKAIEVL 305 (512)
Q Consensus 233 ~~w~~~~~~---~~~~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk-~~~~~~a~~~F~~I~~AYevL 305 (512)
..|..++++ ++|...+....++|+.|||++..-..++-+.-...+.+.-|-. +-++|.=......+..+...|
T Consensus 212 kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 288 (323)
T cd01047 212 KLWIRFFLLSVYATMYLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKL 288 (323)
T ss_pred HHHHHHHHHHHHHhheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 446655554 7788888889999999999998766666666677777887876 344554444444444444433
No 295
>KOG2002|consensus
Probab=21.80 E-value=8.1e+02 Score=29.95 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.2
Q ss_pred CcccccC
Q psy3926 253 DLYGLLE 259 (512)
Q Consensus 253 d~YeiLg 259 (512)
+=++||+
T Consensus 714 ~~~~vl~ 720 (1018)
T KOG2002|consen 714 NRSEVLH 720 (1018)
T ss_pred CCHHHHH
Confidence 3445554
No 296
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.75 E-value=75 Score=33.82 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=49.5
Q ss_pred cccccccch---hhhhcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHc
Q psy3926 233 ISWSFPAIP---LSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDK-NPDDKKAIETFHLLSKAIEVL 305 (512)
Q Consensus 233 ~~w~~~~~~---~~~~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk-~~~~~~a~~~F~~I~~AYevL 305 (512)
..|..++++ ++|...+....++|+.|||++..-..++-+.-...+.+.-|-. +-++|.=......+..+...|
T Consensus 232 kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 308 (355)
T PRK13654 232 RLWIRFFLLAVFATMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKL 308 (355)
T ss_pred HHHHHHHHHHHHhheeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 346655555 7788888889999999999998776666666677788888876 334554444444444444444
No 297
>KOG0151|consensus
Probab=21.66 E-value=1.1e+02 Score=35.64 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCHHHHHHHHhhcCcccEEEe--------ccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecC
Q psy3926 39 YTRESLTKIFSKYGKINILVI--------SPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLN 98 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~--------~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~ 98 (512)
.+++.|...|..||.|..|-| +...+-|++|=|-+..+|+.|+.+=.|. ..-++++-|=.
T Consensus 186 v~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 186 VDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 579999999999999999954 2355679999999999999999876554 34578888864
No 298
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=3.5e+02 Score=22.88 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHh----CCCCC
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKC----HPDKN 285 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~----HPDk~ 285 (512)
.|.-+++|+++-|+..||+.|-++..++. ||...
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~ 40 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAA 40 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchh
Confidence 46667899999999999999887666665 66544
No 299
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=20.78 E-value=85 Score=33.18 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=49.0
Q ss_pred cccccccch---hhhhcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHc
Q psy3926 233 ISWSFPAIP---LSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDK-NPDDKKAIETFHLLSKAIEVL 305 (512)
Q Consensus 233 ~~w~~~~~~---~~~~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk-~~~~~~a~~~F~~I~~AYevL 305 (512)
..|..++++ ++|...+....++|+.|||++.--..++-+.-...+.+.-|-. +-++|.=......+..+...|
T Consensus 222 kLW~RFFLLsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 222 KLWSRFFLLSVYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKI 298 (337)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 446655554 7788888889999999999988666665555667777777865 344554444444444444444
No 300
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=20.74 E-value=98 Score=24.66 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.9
Q ss_pred HHHHHHHhhcCcc
Q psy3926 42 ESLTKIFSKYGKI 54 (512)
Q Consensus 42 ~~l~~~f~kyG~v 54 (512)
..+..||.|||.+
T Consensus 16 ~~~e~I~~KY~~~ 28 (58)
T PF10384_consen 16 SRWESIIEKYGQP 28 (58)
T ss_dssp HHHHHHHHHHCSG
T ss_pred HHHHHHHHHhcCc
Confidence 3567899999998
No 301
>KOG0128|consensus
Probab=20.63 E-value=51 Score=38.84 Aligned_cols=44 Identities=27% Similarity=0.402 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhcCcccEEEe----ccCCCceEEEEeccHHHHHHHHH
Q psy3926 39 YTRESLTKIFSKYGKINILVI----SPKKRGSALLEFEHADSARRAKL 82 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~----~~k~~g~A~vef~~~~aa~~a~~ 82 (512)
=|.+.|+.|++++|+|.++.+ -.|-||.|-|+|.+-..|.+++.
T Consensus 748 gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 748 GTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred CchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcc
Confidence 488999999999999999943 34778999999999999988775
No 302
>KOG3564|consensus
Probab=20.55 E-value=1.3e+03 Score=26.25 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHH
Q psy3926 291 AIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQE 370 (512)
Q Consensus 291 a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~~~r~~~~~~~rrk~~eeLe~rE~e~~~~~~~~~k~~~~~~e~~~~e 370 (512)
+...|..+..-.++|++-. -..+.+++...++-.+.-+..+..-.+.++.|.+.+.+...-. .....++..+..+
T Consensus 8 m~~~f~~l~r~~~~l~~g~-e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ld----vklkha~~~vda~ 82 (604)
T KOG3564|consen 8 MRNLFEQLVRDIEILGEGN-EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALD----VKLKHARNQVDAE 82 (604)
T ss_pred HHHhHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHH
Confidence 3456888888888888776 5556666665555555555555555555555555443322111 1122334455566
Q ss_pred HHHHHH
Q psy3926 371 IDRLRK 376 (512)
Q Consensus 371 ierLRe 376 (512)
|++-|+
T Consensus 83 ik~rr~ 88 (604)
T KOG3564|consen 83 IKRRRR 88 (604)
T ss_pred HHHHHH
Confidence 655444
No 303
>KOG4285|consensus
Probab=20.39 E-value=1.4e+02 Score=31.53 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCcccEEEeccCCCceE-EEEeccHHHHHHHHHhhhCC
Q psy3926 41 RESLTKIFSKYGKINILVISPKKRGSA-LLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~~k~~g~A-~vef~~~~aa~~a~~~e~g~ 87 (512)
...+...|.+||+|+..|.. .+|-= -|-|..+..|.-|+. -.|.
T Consensus 210 ~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ 254 (350)
T KOG4285|consen 210 VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGT 254 (350)
T ss_pred hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCe
Confidence 45788999999999999998 34544 488999999999994 3444
Done!