Query psy3926
Match_columns 512
No_of_seqs 503 out of 2288
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:54:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.8 4.9E-19 1.7E-23 145.3 6.4 70 250-319 5-74 (79)
2 2ctq_A DNAJ homolog subfamily 99.7 1.5E-18 5.3E-23 152.0 7.8 72 250-321 18-89 (112)
3 1wjz_A 1700030A21RIK protein; 99.7 1.3E-18 4.3E-23 147.2 5.9 72 248-319 12-89 (94)
4 2ctw_A DNAJ homolog subfamily 99.7 3.9E-18 1.3E-22 148.8 9.0 73 251-323 16-88 (109)
5 2yua_A Williams-beuren syndrom 99.7 2.6E-18 8.7E-23 147.3 7.6 71 250-320 15-85 (99)
6 1hdj_A Human HSP40, HDJ-1; mol 99.7 1.9E-18 6.5E-23 141.2 6.5 68 251-319 2-69 (77)
7 2och_A Hypothetical protein DN 99.7 3.2E-18 1.1E-22 138.6 6.9 67 250-319 6-72 (73)
8 2ctp_A DNAJ homolog subfamily 99.7 2.8E-18 9.4E-23 140.6 6.5 69 250-319 5-73 (78)
9 2ej7_A HCG3 gene; HCG3 protein 99.7 3.2E-18 1.1E-22 141.3 6.6 69 251-319 8-77 (82)
10 2ctr_A DNAJ homolog subfamily 99.7 4.3E-18 1.5E-22 142.8 7.5 70 250-320 5-74 (88)
11 2cug_A Mkiaa0962 protein; DNAJ 99.7 4.2E-18 1.4E-22 142.9 7.0 68 251-319 16-83 (88)
12 2lgw_A DNAJ homolog subfamily 99.7 1.5E-17 5.1E-22 142.9 8.4 70 252-321 2-72 (99)
13 2dmx_A DNAJ homolog subfamily 99.7 8.4E-18 2.9E-22 142.0 6.2 69 251-319 8-77 (92)
14 2o37_A Protein SIS1; HSP40, J- 99.7 1.6E-17 5.4E-22 140.6 7.8 69 250-321 6-74 (92)
15 3hho_A CO-chaperone protein HS 99.7 3.1E-17 1.1E-21 154.3 9.0 70 251-320 3-79 (174)
16 1bq0_A DNAJ, HSP40; chaperone, 99.7 3.5E-18 1.2E-22 147.4 1.8 70 251-320 2-71 (103)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 2.3E-17 7.9E-22 143.5 6.5 71 250-320 13-87 (109)
18 1fpo_A HSC20, chaperone protei 99.7 4.2E-17 1.4E-21 153.1 6.7 69 252-320 1-76 (171)
19 2l6l_A DNAJ homolog subfamily 99.7 1E-16 3.6E-21 147.6 8.8 74 247-320 5-84 (155)
20 3apq_A DNAJ homolog subfamily 99.7 7.2E-17 2.5E-21 153.1 6.3 69 252-320 2-70 (210)
21 2ys8_A RAB-related GTP-binding 99.6 8.5E-17 2.9E-21 135.7 4.6 64 249-313 24-87 (90)
22 3bvo_A CO-chaperone protein HS 99.6 4.6E-16 1.6E-20 150.2 10.1 70 251-320 42-118 (207)
23 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.6E-15 5.5E-20 130.3 10.8 84 19-102 7-92 (100)
24 2d9o_A DNAJ (HSP40) homolog, s 99.6 6.8E-15 2.3E-19 126.4 11.7 89 405-493 5-95 (100)
25 3uo3_A J-type CO-chaperone JAC 99.6 2.1E-15 7.3E-20 142.8 8.0 65 251-318 10-81 (181)
26 1iur_A KIAA0730 protein; DNAJ 99.5 1.6E-15 5.4E-20 127.8 3.2 62 251-312 15-77 (88)
27 3lz8_A Putative chaperone DNAJ 99.5 4.9E-16 1.7E-20 159.6 0.0 69 250-319 26-94 (329)
28 1n4c_A Auxilin; four helix bun 99.5 1.6E-15 5.5E-20 143.5 3.2 65 250-314 115-182 (182)
29 2qwo_B Putative tyrosine-prote 99.5 2.9E-15 9.8E-20 127.2 3.3 56 252-307 33-91 (92)
30 1gh6_A Large T antigen; tumor 99.5 7.9E-16 2.7E-20 135.6 -1.1 62 252-317 8-71 (114)
31 1faf_A Large T antigen; J doma 99.5 5E-15 1.7E-19 122.1 2.9 59 252-314 11-71 (79)
32 2pf4_E Small T antigen; PP2A, 99.5 1.3E-15 4.5E-20 143.2 -1.1 64 252-319 11-76 (174)
33 3ag7_A Putative uncharacterize 99.5 7.4E-15 2.5E-19 127.8 3.3 59 250-309 39-104 (106)
34 2guz_A Mitochondrial import in 99.4 4.5E-14 1.5E-18 114.0 3.4 56 252-311 14-70 (71)
35 1b7f_A Protein (SXL-lethal pro 99.4 4.4E-12 1.5E-16 114.0 15.9 61 425-485 99-168 (168)
36 3apo_A DNAJ homolog subfamily 99.4 2.5E-14 8.7E-19 160.2 -0.2 72 251-322 20-91 (780)
37 1qm9_A Polypyrimidine tract-bi 99.4 2.3E-11 7.8E-16 113.3 18.2 64 425-488 130-197 (198)
38 1fxl_A Paraneoplastic encephal 99.4 2.1E-11 7.3E-16 109.0 16.6 61 425-485 98-167 (167)
39 2qfj_A FBP-interacting repress 99.3 5.1E-11 1.8E-15 111.6 18.9 69 425-493 135-210 (216)
40 3md3_A Nuclear and cytoplasmic 99.3 2.4E-11 8.1E-16 108.6 15.7 63 425-487 97-166 (166)
41 2adc_A Polypyrimidine tract-bi 99.3 1.2E-10 4.1E-15 111.9 21.1 74 410-488 151-228 (229)
42 2cjk_A Nuclear polyadenylated 99.3 1.3E-11 4.6E-16 111.0 13.3 64 426-489 98-167 (167)
43 1l3k_A Heterogeneous nuclear r 99.3 2.8E-11 9.6E-16 111.7 14.4 68 425-492 114-187 (196)
44 3nmr_A Cugbp ELAV-like family 99.3 9.5E-11 3.3E-15 105.7 16.9 62 425-486 105-175 (175)
45 3pgw_A U1-A; protein-RNA compl 99.3 7.5E-10 2.6E-14 108.7 23.4 73 409-486 206-281 (282)
46 2g4b_A Splicing factor U2AF 65 99.2 2.1E-10 7E-15 103.7 14.3 62 425-486 104-172 (172)
47 3sde_A Paraspeckle component 1 99.2 3.2E-10 1.1E-14 111.1 15.5 65 425-489 106-180 (261)
48 2ghp_A U4/U6 snRNA-associated 99.2 2.9E-10 1E-14 112.1 14.8 76 409-489 209-292 (292)
49 3smz_A Protein raver-1, ribonu 99.1 1.2E-09 4.2E-14 107.2 14.6 68 426-493 195-269 (284)
50 2yh0_A Splicing factor U2AF 65 99.1 1.7E-09 5.9E-14 99.8 14.7 78 409-491 113-197 (198)
51 1fje_B Nucleolin RBD12, protei 99.1 5.5E-10 1.9E-14 101.5 10.9 65 425-489 109-175 (175)
52 3smz_A Protein raver-1, ribonu 99.0 2.6E-09 9E-14 104.9 14.4 67 425-491 105-178 (284)
53 2hvz_A Splicing factor, argini 99.0 1.8E-09 6.2E-14 90.5 11.1 68 425-492 10-79 (101)
54 4fxv_A ELAV-like protein 1; RN 99.0 6.1E-10 2.1E-14 94.4 7.0 63 425-487 29-98 (99)
55 2ghp_A U4/U6 snRNA-associated 99.0 3.5E-09 1.2E-13 104.4 13.6 67 425-491 127-200 (292)
56 1why_A Hypothetical protein ri 99.0 1.8E-09 6E-14 90.1 9.6 77 409-491 16-96 (97)
57 1sjq_A Polypyrimidine tract-bi 99.0 6.5E-10 2.2E-14 96.3 6.1 80 407-492 13-96 (105)
58 2fy1_A RNA-binding motif prote 99.0 3.8E-09 1.3E-13 91.7 11.0 69 425-493 17-91 (116)
59 2lxi_A RNA-binding protein 10; 99.0 4.6E-10 1.6E-14 93.5 4.9 67 425-491 11-86 (91)
60 1whw_A Hypothetical protein ri 98.9 6E-09 2E-13 86.9 11.5 79 409-492 7-92 (99)
61 2dnh_A Bruno-like 5, RNA bindi 98.9 3E-09 1E-13 89.7 9.6 80 409-493 14-102 (105)
62 1wex_A Hypothetical protein (r 98.9 3.3E-09 1.1E-13 91.2 9.7 77 409-491 14-94 (104)
63 2cq1_A PTB-like protein L; RRM 98.9 1.7E-09 6E-14 92.5 7.9 78 409-492 14-95 (101)
64 2dnq_A RNA-binding protein 4B; 98.9 8.3E-09 2.8E-13 84.8 11.6 77 408-492 6-84 (90)
65 2cph_A RNA binding motif prote 98.9 3.9E-09 1.3E-13 89.1 9.6 80 408-492 13-101 (107)
66 3bs9_A Nucleolysin TIA-1 isofo 98.9 2.1E-09 7.2E-14 87.3 7.1 65 425-489 16-87 (87)
67 1x4d_A Matrin 3; structural ge 98.9 1.8E-09 6.2E-14 92.8 6.9 63 426-489 27-93 (102)
68 4a8x_A RNA-binding protein wit 98.9 2.1E-09 7.2E-14 87.3 6.8 67 425-491 14-88 (88)
69 2dgs_A DAZ-associated protein 98.9 5.4E-09 1.8E-13 87.3 9.4 80 408-492 8-93 (99)
70 2dnz_A Probable RNA-binding pr 98.9 8.9E-09 3E-13 85.1 10.5 68 425-492 15-89 (95)
71 2dgo_A Cytotoxic granule-assoc 98.9 4.2E-09 1.4E-13 90.4 8.7 80 409-493 14-100 (115)
72 3zzy_A Polypyrimidine tract-bi 98.9 2.3E-09 8E-14 96.3 7.3 64 425-488 38-106 (130)
73 4f25_A Polyadenylate-binding p 98.9 2.6E-09 9.1E-14 92.4 7.3 69 425-493 15-88 (115)
74 2do4_A Squamous cell carcinoma 98.9 5.2E-09 1.8E-13 87.6 8.9 78 409-491 16-99 (100)
75 1x5p_A Negative elongation fac 98.9 3.9E-09 1.3E-13 88.1 7.9 76 409-492 14-91 (97)
76 2d9p_A Polyadenylate-binding p 98.9 5.3E-09 1.8E-13 88.0 8.6 80 409-493 14-98 (103)
77 1x4c_A Splicing factor, argini 98.9 5.9E-09 2E-13 89.0 8.6 66 425-492 25-97 (108)
78 2ad9_A Polypyrimidine tract-bi 98.9 3.5E-09 1.2E-13 93.6 7.4 78 409-492 30-111 (119)
79 3d2w_A TAR DNA-binding protein 98.9 2.2E-09 7.4E-14 89.1 5.7 77 409-490 10-86 (89)
80 1x4g_A Nucleolysin TIAR; struc 98.9 5.1E-09 1.7E-13 89.2 8.1 79 408-492 23-103 (109)
81 1p27_B RNA-binding protein 8A; 98.9 5.4E-09 1.8E-13 88.2 8.2 77 409-490 22-105 (106)
82 2cqi_A Nucleolysin TIAR; RNA r 98.9 6.4E-09 2.2E-13 87.5 8.5 79 409-492 14-97 (103)
83 2cq3_A RNA-binding protein 9; 98.9 7.8E-09 2.7E-13 86.9 9.0 79 409-492 14-97 (103)
84 2cq0_A Eukaryotic translation 98.8 4E-09 1.4E-13 88.7 7.1 79 409-492 14-99 (103)
85 1wf0_A TDP-43, TAR DNA-binding 98.8 2E-09 6.8E-14 88.2 4.9 68 425-492 15-82 (88)
86 1oo0_B CG8781-PA, drosophila Y 98.8 4.1E-09 1.4E-13 89.7 6.9 79 408-491 24-109 (110)
87 3r27_A HnRNP L, heterogeneous 98.8 6.3E-09 2.1E-13 89.4 8.0 74 409-488 20-97 (100)
88 1sjr_A Polypyrimidine tract-bi 98.8 7.7E-09 2.6E-13 96.4 9.3 64 425-488 56-124 (164)
89 1x5s_A Cold-inducible RNA-bind 98.8 7.9E-09 2.7E-13 86.6 8.5 79 409-492 11-96 (102)
90 3md1_A Nuclear and cytoplasmic 98.8 6.8E-09 2.3E-13 83.5 7.7 65 425-489 11-82 (83)
91 1x5t_A Splicing factor 3B subu 98.8 4.8E-09 1.6E-13 86.8 7.0 69 425-493 15-91 (96)
92 1x4h_A RNA-binding protein 28; 98.8 1E-08 3.6E-13 87.0 9.3 80 409-493 14-106 (111)
93 1p1t_A Cleavage stimulation fa 98.8 3.3E-09 1.1E-13 89.1 6.0 69 425-493 18-93 (104)
94 1x5u_A Splicing factor 3B subu 98.8 1.1E-08 3.6E-13 86.3 9.0 80 408-492 13-99 (105)
95 2dgx_A KIAA0430 protein; RRM d 98.8 6.5E-09 2.2E-13 86.8 7.6 66 425-490 19-92 (96)
96 3p5t_L Cleavage and polyadenyl 98.8 4.7E-09 1.6E-13 86.6 6.6 68 425-492 11-87 (90)
97 2dnm_A SRP46 splicing factor; 98.8 7.7E-09 2.6E-13 87.0 8.0 79 409-492 12-97 (103)
98 2cqg_A TDP-43, TAR DNA-binding 98.8 7.6E-09 2.6E-13 87.0 7.9 78 409-491 14-96 (103)
99 2dhg_A TRNA selenocysteine ass 98.8 9.9E-09 3.4E-13 86.3 8.6 80 409-493 8-95 (104)
100 2i2y_A Fusion protein consists 98.8 8.6E-09 2.9E-13 92.7 8.6 65 425-489 83-149 (150)
101 2cqb_A Peptidyl-prolyl CIS-tra 98.8 5.7E-09 1.9E-13 87.5 6.7 79 409-492 11-96 (102)
102 2kxn_B Transformer-2 protein h 98.8 1.2E-08 4E-13 90.6 9.1 78 409-491 45-129 (129)
103 2cpz_A CUG triplet repeat RNA- 98.8 7.1E-09 2.4E-13 89.0 7.4 79 409-492 24-109 (115)
104 1x4a_A Splicing factor, argini 98.8 1E-08 3.6E-13 87.2 8.3 79 409-492 21-103 (109)
105 3s8s_A Histone-lysine N-methyl 98.8 4.7E-09 1.6E-13 90.7 6.2 68 425-492 16-90 (110)
106 2jrs_A RNA-binding protein 39; 98.8 2.5E-08 8.6E-13 85.5 10.7 78 407-489 23-107 (108)
107 2dgu_A Heterogeneous nuclear r 98.8 1.3E-08 4.3E-13 85.9 8.6 77 409-493 10-88 (103)
108 2x1f_A MRNA 3'-END-processing 98.8 8.1E-09 2.8E-13 85.9 7.1 68 425-492 12-86 (96)
109 2cpj_A Non-POU domain-containi 98.8 1E-08 3.4E-13 85.8 7.7 77 409-491 14-92 (99)
110 2bz2_A Negative elongation fac 98.8 9.7E-09 3.3E-13 90.2 7.8 76 409-492 38-115 (121)
111 2wbr_A GW182, gawky, LD47780P; 98.8 6.2E-09 2.1E-13 87.7 6.2 61 425-486 17-79 (89)
112 2do0_A HnRNP M, heterogeneous 98.8 1.8E-08 6.1E-13 86.1 9.2 80 409-493 14-99 (114)
113 2dgp_A Bruno-like 4, RNA bindi 98.8 1.3E-08 4.6E-13 85.8 8.3 80 408-492 11-100 (106)
114 2ytc_A PRE-mRNA-splicing facto 98.8 9E-09 3.1E-13 83.3 6.9 73 408-486 10-85 (85)
115 2cpf_A RNA binding motif prote 98.8 9.9E-09 3.4E-13 85.4 7.2 68 425-492 15-92 (98)
116 3ex7_B RNA-binding protein 8A; 98.8 1.2E-08 4.2E-13 88.8 8.1 80 408-492 20-106 (126)
117 3mdf_A Peptidyl-prolyl CIS-tra 98.8 8.3E-09 2.8E-13 83.3 6.5 62 425-486 17-85 (85)
118 2jvo_A Nucleolar protein 3; nu 98.8 6.9E-09 2.4E-13 89.1 6.3 75 409-491 30-106 (108)
119 2a3j_A U1 small nuclear ribonu 98.8 1.4E-08 4.7E-13 90.4 8.5 80 409-493 28-115 (127)
120 2mss_A Protein (musashi1); RNA 98.8 1E-08 3.5E-13 81.2 6.8 61 425-485 9-75 (75)
121 2lkz_A RNA-binding protein 5; 98.8 1.1E-08 3.7E-13 86.5 7.3 77 406-487 5-94 (95)
122 3ucg_A Polyadenylate-binding p 98.8 1.1E-08 3.6E-13 83.4 7.0 65 425-489 16-86 (89)
123 1x4f_A Matrin 3; structural ge 98.8 1E-08 3.5E-13 89.7 7.4 65 425-490 35-104 (112)
124 2dnp_A RNA-binding protein 14; 98.8 1.4E-08 4.6E-13 83.5 7.7 76 409-492 8-85 (90)
125 2jwn_A Embryonic polyadenylate 98.8 9.5E-09 3.2E-13 89.3 6.9 77 411-492 37-119 (124)
126 2kvi_A Nuclear polyadenylated 98.8 1.4E-08 4.6E-13 84.8 7.4 63 426-491 22-86 (96)
127 1s79_A Lupus LA protein; RRM, 98.8 2E-08 7E-13 85.8 8.5 63 425-487 21-88 (103)
128 2dis_A Unnamed protein product 98.8 2.2E-08 7.6E-13 84.8 8.7 78 409-491 7-95 (109)
129 1whx_A Hypothetical protein ri 98.8 1.6E-08 5.5E-13 87.1 7.9 62 426-488 21-84 (111)
130 2rs2_A Musashi-1, RNA-binding 98.8 1.5E-08 5.1E-13 86.9 7.6 78 409-491 24-107 (109)
131 1u6f_A Tcubp1, RNA-binding pro 98.8 1.4E-08 4.9E-13 89.9 7.7 79 409-492 41-126 (139)
132 2e5j_A Methenyltetrahydrofolat 98.7 2.4E-08 8.2E-13 83.3 8.5 77 409-490 18-96 (97)
133 2y4t_A DNAJ homolog subfamily 98.7 5.2E-09 1.8E-13 105.6 5.3 66 251-316 381-449 (450)
134 2dgv_A HnRNP M, heterogeneous 98.7 2.2E-08 7.5E-13 82.2 8.0 77 409-490 7-88 (92)
135 2dgt_A RNA-binding protein 30; 98.7 2.1E-08 7.3E-13 82.7 7.9 76 409-492 9-86 (92)
136 2jvr_A Nucleolar protein 3; RN 98.7 1.1E-08 3.7E-13 89.1 6.4 67 425-491 38-108 (111)
137 2e5i_A Heterogeneous nuclear r 98.7 2.2E-08 7.7E-13 89.0 8.4 64 425-489 35-103 (124)
138 2err_A Ataxin-2-binding protei 98.7 9.8E-09 3.4E-13 87.9 5.8 77 408-489 27-108 (109)
139 3tyt_A Heterogeneous nuclear r 98.7 2E-08 6.8E-13 95.8 8.5 63 426-488 16-80 (205)
140 1x4b_A Heterogeneous nuclear r 98.7 1.8E-08 6.1E-13 86.7 7.3 68 425-492 37-110 (116)
141 2la4_A Nuclear and cytoplasmic 98.7 1.1E-08 3.8E-13 85.7 5.7 74 409-488 26-101 (101)
142 2e5h_A Zinc finger CCHC-type a 98.7 2.1E-08 7.1E-13 82.6 7.3 74 408-486 14-94 (94)
143 2xnq_A Nuclear polyadenylated 98.7 2E-08 6.9E-13 84.3 7.4 75 407-489 19-96 (97)
144 2cpi_A CCR4-NOT transcription 98.7 1.2E-08 4.1E-13 87.6 5.8 65 426-490 26-103 (111)
145 2ywk_A Putative RNA-binding pr 98.7 1.9E-08 6.5E-13 83.0 6.8 75 408-487 14-94 (95)
146 2kn4_A Immunoglobulin G-bindin 98.7 2.7E-08 9.2E-13 89.8 8.3 68 425-492 80-154 (158)
147 2cqc_A Arginine/serine-rich sp 98.7 2.4E-08 8.1E-13 82.3 7.2 75 408-487 13-94 (95)
148 2dh8_A DAZ-associated protein 98.7 1.3E-08 4.5E-13 85.9 5.6 68 425-492 26-99 (105)
149 2div_A TRNA selenocysteine ass 98.7 2.3E-08 8E-13 83.3 7.1 65 425-489 19-95 (99)
150 1wf1_A RNA-binding protein RAL 98.7 1.6E-08 5.5E-13 86.3 6.1 65 425-492 37-104 (110)
151 1h2v_Z 20 kDa nuclear CAP bind 98.7 2.5E-08 8.5E-13 90.3 7.7 79 409-492 38-123 (156)
152 2lea_A Serine/arginine-rich sp 98.7 2.7E-08 9.2E-13 88.8 7.8 79 409-492 46-131 (135)
153 2cqd_A RNA-binding region cont 98.7 6.7E-08 2.3E-12 83.0 9.9 76 408-488 15-96 (116)
154 2cq2_A Hypothetical protein LO 98.7 2.2E-08 7.6E-13 87.9 7.0 81 408-492 23-110 (114)
155 2cqh_A IGF-II mRNA-binding pro 98.7 1.3E-08 4.4E-13 84.0 5.1 77 409-492 7-87 (93)
156 2la6_A RNA-binding protein FUS 98.7 4.2E-08 1.4E-12 81.9 8.2 73 409-486 12-99 (99)
157 1wi8_A EIF-4B, eukaryotic tran 98.7 3.3E-08 1.1E-12 83.3 7.5 78 409-492 14-98 (104)
158 3lqv_A PRE-mRNA branch site pr 98.7 3E-08 1E-12 85.0 7.2 66 425-490 18-87 (115)
159 2ki2_A SS-DNA binding protein 98.7 1.4E-08 4.9E-13 83.1 5.0 65 426-491 12-83 (90)
160 3s7r_A Heterogeneous nuclear r 98.7 2.6E-08 8.8E-13 81.0 6.5 72 409-485 10-87 (87)
161 1x5o_A RNA binding motif, sing 98.7 4.5E-08 1.5E-12 83.7 8.2 64 425-488 35-112 (114)
162 2cpe_A RNA-binding protein EWS 98.7 2.7E-08 9.2E-13 85.0 6.8 80 408-492 13-107 (113)
163 3ns6_A Eukaryotic translation 98.7 2.7E-08 9.3E-13 83.9 6.7 63 426-488 23-93 (100)
164 1uaw_A Mouse-musashi-1; RNP-ty 98.7 2.7E-08 9.1E-13 78.9 6.2 61 425-485 10-76 (77)
165 1nu4_A U1A RNA binding domain; 98.7 1.8E-08 6E-13 83.6 5.3 79 409-492 7-93 (97)
166 2m2b_A RNA-binding protein 10; 98.7 2.9E-08 1E-12 87.6 7.0 78 409-492 22-112 (131)
167 1rk8_A CG8781-PA, CG8781-PA pr 98.7 2.5E-08 8.6E-13 91.4 6.7 80 408-492 70-156 (165)
168 2dng_A Eukaryotic translation 98.7 4.1E-08 1.4E-12 82.6 7.5 78 409-492 14-97 (103)
169 2j76_E EIF-4B, EIF4B, eukaryot 98.7 2.2E-08 7.6E-13 84.2 5.6 75 409-489 18-99 (100)
170 2kt5_A RNA and export factor-b 98.6 5.3E-08 1.8E-12 84.7 8.0 77 409-490 34-116 (124)
171 2cpd_A Apobec-1 stimulating pr 98.6 6.7E-08 2.3E-12 80.7 8.0 75 409-491 14-92 (99)
172 1iqt_A AUF1, heterogeneous nuc 98.6 2.4E-08 8.3E-13 78.8 4.9 61 425-485 9-75 (75)
173 2cq4_A RNA binding motif prote 98.6 1.1E-08 3.8E-13 87.7 3.1 77 411-492 26-108 (114)
174 2cpx_A Hypothetical protein FL 98.6 5.7E-08 1.9E-12 83.1 7.5 80 409-493 24-110 (115)
175 3ulh_A THO complex subunit 4; 98.6 5.2E-08 1.8E-12 82.3 7.1 74 408-486 27-106 (107)
176 2e44_A Insulin-like growth fac 98.6 9.6E-08 3.3E-12 79.0 8.7 63 426-488 26-92 (96)
177 2khc_A Testis-specific RNP-typ 98.6 3E-08 1E-12 85.3 5.8 73 409-486 39-118 (118)
178 2xs2_A Deleted in azoospermia- 98.6 1.3E-08 4.4E-13 85.4 3.3 69 425-493 19-91 (102)
179 2pe8_A Splicing factor 45; RRM 98.6 8.9E-08 3.1E-12 82.3 8.6 79 409-487 7-93 (105)
180 1x4e_A RNA binding motif, sing 98.6 3.5E-08 1.2E-12 79.9 5.4 62 425-486 15-83 (85)
181 1wex_A Hypothetical protein (r 98.6 1.5E-07 5.2E-12 80.7 9.5 63 38-101 26-92 (104)
182 2hvz_A Splicing factor, argini 98.6 2.5E-07 8.6E-12 77.3 10.5 65 38-102 11-77 (101)
183 4f02_A Polyadenylate-binding p 98.6 3.1E-08 1.1E-12 94.0 5.5 69 425-493 113-186 (213)
184 2dit_A HIV TAT specific factor 98.6 5.1E-08 1.7E-12 83.9 6.2 84 407-490 12-104 (112)
185 2cqp_A RNA-binding protein 12; 98.6 2.8E-08 9.6E-13 82.6 4.4 76 409-489 14-96 (98)
186 2nlw_A Eukaryotic translation 98.6 5.3E-08 1.8E-12 82.7 5.7 61 428-488 34-100 (105)
187 1fjc_A Nucleolin RBD2, protein 98.6 5.7E-08 1.9E-12 80.4 5.3 78 409-491 15-94 (96)
188 3beg_B Splicing factor, argini 98.5 2E-07 6.7E-12 80.6 8.6 62 425-488 26-94 (115)
189 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.5 1E-07 3.5E-12 83.8 6.8 72 409-485 62-140 (140)
190 3u1l_A PRE-mRNA-splicing facto 98.5 9.8E-08 3.3E-12 94.0 7.3 63 428-491 156-232 (240)
191 2cpy_A RNA-binding protein 12; 98.5 4.1E-08 1.4E-12 84.6 3.7 79 409-492 14-98 (114)
192 1fj7_A Nucleolin RBD1, protein 98.5 5.3E-08 1.8E-12 81.5 4.2 68 425-492 27-99 (101)
193 2e5g_A U6 snRNA-specific termi 98.5 1.9E-07 6.5E-12 77.3 7.5 67 425-491 18-85 (94)
194 1qm9_A Polypyrimidine tract-bi 98.5 2E-07 7E-12 86.4 8.3 64 426-489 15-80 (198)
195 1wg5_A Heterogeneous nuclear r 98.5 3.2E-07 1.1E-11 77.6 8.8 67 425-491 25-97 (104)
196 1sjq_A Polypyrimidine tract-bi 98.5 1.4E-07 4.9E-12 81.6 6.6 65 38-103 27-95 (105)
197 2cq1_A PTB-like protein L; RRM 98.5 1.6E-07 5.4E-12 80.2 6.5 64 38-102 26-93 (101)
198 3n9u_C Cleavage and polyadenyl 98.5 1.1E-07 3.7E-12 87.2 5.9 64 425-488 65-137 (156)
199 2fc9_A NCL protein; structure 98.5 1.7E-07 5.8E-12 78.4 6.6 76 408-491 13-94 (101)
200 1why_A Hypothetical protein ri 98.5 3.5E-07 1.2E-11 76.0 8.4 63 38-101 28-94 (97)
201 2krb_A Eukaryotic translation 98.5 1.2E-07 4E-12 76.5 5.3 55 428-482 20-80 (81)
202 3v4m_A Splicing factor U2AF 65 98.5 1.4E-07 4.6E-12 81.1 5.9 59 429-487 29-96 (105)
203 2adc_A Polypyrimidine tract-bi 98.5 3.2E-07 1.1E-11 87.9 9.1 76 408-488 32-110 (229)
204 3pgw_S U1-70K; protein-RNA com 98.5 6.9E-07 2.3E-11 94.8 12.4 66 425-490 112-184 (437)
205 2dgw_A Probable RNA-binding pr 98.5 2.3E-07 7.8E-12 76.1 6.8 77 409-491 9-90 (91)
206 2dnz_A Probable RNA-binding pr 98.5 5.7E-07 1.9E-11 74.1 9.1 66 38-103 16-88 (95)
207 2e5i_A Heterogeneous nuclear r 98.5 3.4E-07 1.2E-11 81.3 8.3 62 38-100 36-102 (124)
208 1jmt_A Splicing factor U2AF 35 98.5 1.6E-07 5.6E-12 80.4 5.7 55 431-485 42-103 (104)
209 2dnq_A RNA-binding protein 4B; 98.5 6.9E-07 2.3E-11 73.2 9.2 63 38-103 19-83 (90)
210 1x4f_A Matrin 3; structural ge 98.4 2E-07 6.7E-12 81.5 6.0 61 39-100 38-102 (112)
211 2f3j_A RNA and export factor b 98.4 3.7E-07 1.3E-11 85.3 8.1 65 425-489 98-168 (177)
212 2ek1_A RNA-binding protein 12; 98.4 1.2E-07 4.2E-12 78.1 4.3 72 410-486 15-93 (95)
213 2fy1_A RNA-binding motif prote 98.4 8.3E-07 2.8E-11 76.9 9.8 66 38-103 18-89 (116)
214 1wf0_A TDP-43, TAR DNA-binding 98.4 1.2E-07 4E-12 77.5 4.1 65 38-102 16-80 (88)
215 2diu_A KIAA0430 protein; struc 98.4 5.1E-07 1.7E-11 77.0 8.1 64 425-493 19-89 (96)
216 3r27_A HnRNP L, heterogeneous 98.4 3.1E-07 1.1E-11 78.8 6.9 61 38-99 32-96 (100)
217 1sjr_A Polypyrimidine tract-bi 98.4 6.1E-07 2.1E-11 83.5 9.4 63 38-100 57-124 (164)
218 3egn_A RNA-binding protein 40; 98.4 2E-07 7E-12 83.0 5.9 80 409-493 44-135 (143)
219 3md3_A Nuclear and cytoplasmic 98.4 3.6E-07 1.2E-11 81.2 7.3 65 426-490 11-81 (166)
220 1x4d_A Matrin 3; structural ge 98.4 1.6E-07 5.6E-12 80.5 4.9 62 38-100 27-92 (102)
221 1b7f_A Protein (SXL-lethal pro 98.4 4.1E-07 1.4E-11 81.3 7.7 67 425-491 13-86 (168)
222 2lcw_A RNA-binding protein FUS 97.8 2.8E-08 9.4E-13 85.6 0.0 67 426-492 18-99 (116)
223 2cph_A RNA binding motif prote 98.4 6.8E-07 2.3E-11 75.2 8.6 66 38-103 26-100 (107)
224 3s6e_A RNA-binding protein 39; 98.4 2.3E-07 7.9E-12 81.1 5.8 79 409-487 6-92 (114)
225 1fxl_A Paraneoplastic encephal 98.4 5.3E-07 1.8E-11 80.2 8.3 67 425-491 12-85 (167)
226 3zzy_A Polypyrimidine tract-bi 98.4 3.5E-07 1.2E-11 82.1 7.0 63 38-100 39-106 (130)
227 4a8x_A RNA-binding protein wit 98.4 3.2E-07 1.1E-11 74.2 6.1 64 38-101 15-86 (88)
228 1x5p_A Negative elongation fac 98.4 4E-07 1.4E-11 75.8 6.6 65 38-103 24-90 (97)
229 2ad9_A Polypyrimidine tract-bi 98.4 4.8E-07 1.7E-11 79.9 7.5 65 38-103 42-110 (119)
230 3q2s_C Cleavage and polyadenyl 98.4 3E-07 1E-11 89.3 6.6 64 425-488 78-150 (229)
231 2dgs_A DAZ-associated protein 98.4 8.8E-07 3E-11 73.7 8.5 66 38-103 21-92 (99)
232 1wez_A HnRNP H', FTP-3, hetero 98.4 3.5E-07 1.2E-11 77.6 6.2 76 409-490 14-94 (102)
233 1l3k_A Heterogeneous nuclear r 98.4 4.8E-07 1.6E-11 83.1 7.5 78 409-491 12-95 (196)
234 2dnl_A Cytoplasmic polyadenyla 98.4 2.8E-07 9.7E-12 79.3 5.6 73 409-487 7-87 (114)
235 1wg1_A KIAA1579 protein, homol 98.4 3.2E-07 1.1E-11 75.1 5.5 62 425-488 15-78 (88)
236 2dnh_A Bruno-like 5, RNA bindi 98.4 6.7E-07 2.3E-11 75.1 7.5 66 38-103 26-100 (105)
237 3bs9_A Nucleolysin TIA-1 isofo 98.4 3.9E-07 1.3E-11 73.7 5.8 63 38-100 17-86 (87)
238 2qfj_A FBP-interacting repress 98.4 1E-06 3.6E-11 82.1 9.4 77 410-491 28-111 (216)
239 2kvi_A Nuclear polyadenylated 98.4 6.9E-07 2.4E-11 74.3 7.2 62 38-102 22-85 (96)
240 2voo_A Lupus LA protein; RNA-b 98.4 5.5E-07 1.9E-11 85.1 7.3 62 426-487 120-186 (193)
241 2ytc_A PRE-mRNA-splicing facto 98.4 3.8E-07 1.3E-11 73.6 5.3 59 38-97 23-84 (85)
242 1whw_A Hypothetical protein ri 98.4 1.5E-06 5.2E-11 72.1 9.2 66 38-103 19-91 (99)
243 1wel_A RNA-binding protein 12; 98.4 2.1E-07 7.2E-12 81.2 4.0 65 425-489 35-105 (124)
244 1whx_A Hypothetical protein ri 98.4 8.6E-07 2.9E-11 76.2 7.8 62 38-100 21-84 (111)
245 2guz_B Mitochondrial import in 98.4 3.4E-07 1.2E-11 72.8 4.8 50 253-306 5-57 (65)
246 2cq3_A RNA-binding protein 9; 98.3 8.9E-07 3E-11 74.2 7.6 66 38-103 26-96 (103)
247 2d9p_A Polyadenylate-binding p 98.3 7.4E-07 2.5E-11 74.7 7.0 66 38-103 26-96 (103)
248 1x4g_A Nucleolysin TIAR; struc 98.3 1.1E-06 3.7E-11 74.7 8.1 65 38-103 36-102 (109)
249 2cpf_A RNA binding motif prote 98.3 6.2E-07 2.1E-11 74.4 6.0 66 38-103 16-91 (98)
250 2db1_A Heterogeneous nuclear r 98.3 2E-07 6.9E-12 81.0 3.2 76 409-489 16-99 (118)
251 2cjk_A Nuclear polyadenylated 98.3 4.5E-07 1.5E-11 81.1 5.6 66 425-490 13-83 (167)
252 2fc8_A NCL protein; structure 98.3 7.2E-07 2.5E-11 74.5 6.5 77 408-492 13-96 (102)
253 1p27_B RNA-binding protein 8A; 98.3 7.7E-07 2.6E-11 74.9 6.6 63 38-100 34-103 (106)
254 3ue2_A Poly(U)-binding-splicin 98.3 6.5E-07 2.2E-11 78.7 6.3 78 409-486 19-107 (118)
255 2do4_A Squamous cell carcinoma 98.3 9.8E-07 3.3E-11 73.6 7.0 64 38-101 28-97 (100)
256 2cqh_A IGF-II mRNA-binding pro 98.3 6.2E-07 2.1E-11 73.8 5.6 64 38-103 19-86 (93)
257 2jvo_A Nucleolar protein 3; nu 98.3 6.9E-07 2.4E-11 76.5 6.1 62 38-102 42-105 (108)
258 1x5u_A Splicing factor 3B subu 98.3 1.3E-06 4.5E-11 73.3 7.7 65 38-102 26-97 (105)
259 1x5s_A Cold-inducible RNA-bind 98.3 2.2E-06 7.5E-11 71.5 8.9 65 38-102 23-94 (102)
260 1p1t_A Cleavage stimulation fa 98.3 6.8E-07 2.3E-11 74.8 5.8 66 38-103 19-91 (104)
261 2cqb_A Peptidyl-prolyl CIS-tra 98.3 7.3E-07 2.5E-11 74.5 5.9 66 38-103 23-95 (102)
262 2dgp_A Bruno-like 4, RNA bindi 98.3 2.8E-06 9.4E-11 71.4 9.5 66 38-103 24-99 (106)
263 4f02_A Polyadenylate-binding p 98.3 1.1E-06 3.6E-11 83.4 7.7 77 410-491 15-98 (213)
264 2dgo_A Cytotoxic granule-assoc 98.3 8.7E-07 3E-11 75.7 6.4 66 38-103 26-98 (115)
265 2xnq_A Nuclear polyadenylated 98.3 1.4E-06 4.7E-11 73.0 7.4 60 38-100 34-95 (97)
266 2i2y_A Fusion protein consists 98.3 1.2E-06 4.1E-11 78.6 7.5 63 38-100 84-148 (150)
267 2x1f_A MRNA 3'-END-processing 98.3 1.2E-06 4E-11 72.7 6.9 66 38-103 13-85 (96)
268 2dgt_A RNA-binding protein 30; 98.3 1.5E-06 5.2E-11 71.4 7.6 63 38-103 21-85 (92)
269 2lmi_A GRSF-1, G-rich sequence 98.3 5.3E-07 1.8E-11 76.7 4.9 76 409-489 10-93 (107)
270 2cqi_A Nucleolysin TIAR; RNA r 98.3 1.1E-06 3.7E-11 73.7 6.7 65 38-102 26-95 (103)
271 4fxv_A ELAV-like protein 1; RN 98.3 7.2E-07 2.5E-11 75.3 5.5 62 38-99 30-98 (99)
272 2bz2_A Negative elongation fac 98.3 1.4E-06 4.7E-11 76.4 7.5 65 38-103 48-114 (121)
273 2cqg_A TDP-43, TAR DNA-binding 98.3 1.1E-06 3.9E-11 73.6 6.7 65 38-102 26-95 (103)
274 1oo0_B CG8781-PA, drosophila Y 98.3 8.8E-07 3E-11 75.1 6.1 63 38-100 37-106 (110)
275 1x4h_A RNA-binding protein 28; 98.3 1.9E-06 6.5E-11 72.9 8.1 66 38-103 26-104 (111)
276 2dgu_A Heterogeneous nuclear r 98.3 1E-06 3.5E-11 74.0 6.3 63 38-103 22-86 (103)
277 2dnp_A RNA-binding protein 14; 98.3 1.4E-06 4.8E-11 71.3 7.0 63 38-103 20-84 (90)
278 3d2w_A TAR DNA-binding protein 98.3 5.8E-07 2E-11 74.4 4.6 63 38-100 22-84 (89)
279 3ex7_B RNA-binding protein 8A; 98.3 1.4E-06 4.9E-11 75.6 7.3 64 38-101 33-103 (126)
280 2dnm_A SRP46 splicing factor; 98.3 1.5E-06 5E-11 72.8 7.1 65 38-102 24-95 (103)
281 2a3j_A U1 small nuclear ribonu 98.3 2.2E-06 7.4E-11 76.1 8.4 66 38-103 40-113 (127)
282 2cpj_A Non-POU domain-containi 98.3 2E-06 6.7E-11 71.7 7.7 64 38-102 26-91 (99)
283 2hgl_A HNRPF protein, heteroge 98.3 7.6E-07 2.6E-11 80.1 5.4 75 409-488 43-125 (136)
284 3md1_A Nuclear and cytoplasmic 98.3 1.2E-06 4.1E-11 70.2 6.0 63 38-100 12-81 (83)
285 2kt5_A RNA and export factor-b 98.3 2.3E-06 8E-11 74.3 8.2 66 38-103 46-117 (124)
286 2cq0_A Eukaryotic translation 98.3 7.4E-07 2.5E-11 74.7 4.9 66 38-103 26-98 (103)
287 2hgn_A Heterogeneous nuclear r 98.2 6.5E-07 2.2E-11 80.9 4.7 66 425-491 56-126 (139)
288 2err_A Ataxin-2-binding protei 98.2 1E-06 3.5E-11 75.3 5.6 63 38-100 40-107 (109)
289 2e44_A Insulin-like growth fac 98.2 2.5E-06 8.4E-11 70.4 7.7 63 38-100 26-92 (96)
290 2cqc_A Arginine/serine-rich sp 98.2 9.2E-07 3.1E-11 72.7 5.0 61 38-98 26-93 (95)
291 1x5t_A Splicing factor 3B subu 98.2 1.3E-06 4.5E-11 72.0 5.9 66 38-103 16-89 (96)
292 3mdf_A Peptidyl-prolyl CIS-tra 98.2 1E-06 3.5E-11 70.9 5.1 60 38-97 18-84 (85)
293 2dis_A Unnamed protein product 98.2 2.1E-06 7.2E-11 72.5 7.3 66 38-103 19-95 (109)
294 2dgv_A HnRNP M, heterogeneous 98.2 1.9E-06 6.6E-11 70.4 6.8 65 38-102 19-88 (92)
295 2kxn_B Transformer-2 protein h 98.2 2.5E-06 8.7E-11 75.4 7.9 63 38-100 57-126 (129)
296 2ywk_A Putative RNA-binding pr 98.2 1.1E-06 3.9E-11 72.2 5.3 60 38-97 27-92 (95)
297 2lxi_A RNA-binding protein 10; 98.2 1.2E-06 4E-11 72.7 5.3 65 38-102 12-85 (91)
298 3pgw_A U1-A; protein-RNA compl 98.2 2.2E-06 7.4E-11 83.9 7.9 78 408-490 7-92 (282)
299 2mss_A Protein (musashi1); RNA 98.2 1.9E-06 6.5E-11 67.9 6.1 59 38-96 10-74 (75)
300 2jrs_A RNA-binding protein 39; 98.2 2.3E-06 7.8E-11 73.1 7.0 63 38-100 37-106 (108)
301 1uaw_A Mouse-musashi-1; RNP-ty 98.2 1.7E-06 5.9E-11 68.2 5.7 59 38-96 11-75 (77)
302 1u6f_A Tcubp1, RNA-binding pro 98.2 2.6E-06 9E-11 75.1 7.6 66 38-103 53-125 (139)
303 2cpz_A CUG triplet repeat RNA- 98.2 2E-06 6.7E-11 73.6 6.5 66 38-103 36-108 (115)
304 1s79_A Lupus LA protein; RRM, 98.2 2.7E-06 9.2E-11 72.5 7.3 60 38-98 22-87 (103)
305 2cq2_A Hypothetical protein LO 98.2 2.3E-06 7.8E-11 75.1 6.9 62 38-100 38-106 (114)
306 2hzc_A Splicing factor U2AF 65 98.2 2.1E-06 7.1E-11 69.3 6.2 59 425-484 16-86 (87)
307 2nlw_A Eukaryotic translation 98.2 1.2E-06 4.1E-11 74.2 5.0 61 40-100 34-100 (105)
308 2dha_A FLJ20171 protein; RRM d 98.2 4.5E-07 1.5E-11 80.2 2.3 75 410-489 23-106 (123)
309 1nu4_A U1A RNA binding domain; 98.2 1.2E-06 4.2E-11 72.3 4.8 64 38-101 19-90 (97)
310 2e5h_A Zinc finger CCHC-type a 98.2 1.9E-06 6.4E-11 70.8 5.7 60 38-97 27-93 (94)
311 2la6_A RNA-binding protein FUS 98.2 2.9E-06 9.8E-11 70.7 6.9 60 38-97 24-98 (99)
312 1x4a_A Splicing factor, argini 98.2 3.6E-06 1.2E-10 71.3 7.6 65 38-102 33-101 (109)
313 4f25_A Polyadenylate-binding p 98.2 1.8E-06 6.2E-11 74.4 5.8 65 38-102 16-85 (115)
314 2dhg_A TRNA selenocysteine ass 98.2 3.7E-06 1.3E-10 70.4 7.5 66 38-103 20-93 (104)
315 3tyt_A Heterogeneous nuclear r 98.2 1.7E-06 5.7E-11 82.4 6.1 61 38-98 16-78 (205)
316 2div_A TRNA selenocysteine ass 98.2 2.7E-06 9.3E-11 70.6 6.6 63 38-100 20-94 (99)
317 2e5j_A Methenyltetrahydrofolat 98.2 4.8E-06 1.6E-10 69.1 8.1 63 38-100 30-94 (97)
318 2dnn_A RNA-binding protein 12; 98.2 3.1E-06 1.1E-10 73.1 7.0 63 425-488 26-93 (109)
319 3nmr_A Cugbp ELAV-like family 98.2 3.6E-06 1.2E-10 75.4 7.7 66 425-490 13-90 (175)
320 2la4_A Nuclear and cytoplasmic 98.2 2.6E-06 8.8E-11 71.1 6.2 61 38-99 38-100 (101)
321 2dgx_A KIAA0430 protein; RRM d 98.2 4.7E-06 1.6E-10 69.3 7.8 65 38-102 20-92 (96)
322 2ki2_A SS-DNA binding protein 98.2 1.7E-06 5.9E-11 70.6 5.0 65 38-103 12-83 (90)
323 3lqv_A PRE-mRNA branch site pr 98.2 4.6E-06 1.6E-10 71.2 7.8 63 38-100 19-85 (115)
324 2lea_A Serine/arginine-rich sp 98.1 2.8E-06 9.6E-11 75.6 6.7 65 38-102 58-129 (135)
325 1h2v_Z 20 kDa nuclear CAP bind 98.1 2.2E-06 7.7E-11 77.3 6.1 65 38-102 50-121 (156)
326 2cpe_A RNA-binding protein EWS 98.1 3.4E-06 1.2E-10 71.8 6.8 66 38-103 26-106 (113)
327 2krb_A Eukaryotic translation 98.1 1.7E-06 5.7E-11 69.6 4.6 44 40-83 20-66 (81)
328 2jwn_A Embryonic polyadenylate 98.1 2E-06 6.7E-11 74.5 5.3 63 38-100 47-115 (124)
329 2do0_A HnRNP M, heterogeneous 98.1 3.2E-06 1.1E-10 72.0 6.5 63 38-100 26-94 (114)
330 3ns6_A Eukaryotic translation 98.1 1.7E-06 5.9E-11 72.7 4.7 62 39-100 24-93 (100)
331 1x5o_A RNA binding motif, sing 98.1 3.9E-06 1.3E-10 71.5 6.7 63 38-100 36-112 (114)
332 2khc_A Testis-specific RNP-typ 98.1 1.7E-06 5.9E-11 74.2 4.4 59 38-96 51-116 (118)
333 1iqt_A AUF1, heterogeneous nuc 98.1 2.7E-06 9.4E-11 66.8 5.2 58 38-96 10-74 (75)
334 3s7r_A Heterogeneous nuclear r 98.1 2.8E-06 9.7E-11 68.8 5.4 58 38-96 22-86 (87)
335 2cpx_A Hypothetical protein FL 98.1 5.8E-06 2E-10 70.4 7.5 66 38-103 36-108 (115)
336 2cq4_A RNA binding motif prote 98.1 2.6E-06 8.9E-11 72.7 5.3 66 38-103 36-107 (114)
337 3s8s_A Histone-lysine N-methyl 98.1 2.5E-06 8.7E-11 73.4 5.2 63 38-100 17-86 (110)
338 1wf1_A RNA-binding protein RAL 98.1 3.6E-06 1.2E-10 71.5 6.1 59 39-100 40-100 (110)
339 1x4b_A Heterogeneous nuclear r 98.1 5.4E-06 1.8E-10 71.0 7.1 65 38-103 38-109 (116)
340 3sde_A Paraspeckle component 1 98.1 3.9E-06 1.3E-10 82.0 7.0 73 409-487 21-95 (261)
341 3ulh_A THO complex subunit 4; 98.1 3.5E-06 1.2E-10 70.9 5.7 61 38-98 40-106 (107)
342 2cqd_A RNA-binding region cont 98.1 6.9E-06 2.4E-10 70.3 7.7 63 38-100 28-96 (116)
343 2dit_A HIV TAT specific factor 98.1 6E-06 2.1E-10 70.8 7.3 60 41-100 40-102 (112)
344 2kn4_A Immunoglobulin G-bindin 98.1 6.2E-06 2.1E-10 74.2 7.7 65 38-102 81-152 (158)
345 3p5t_L Cleavage and polyadenyl 98.1 3.8E-06 1.3E-10 68.9 5.7 65 38-102 12-85 (90)
346 2dh8_A DAZ-associated protein 98.1 3.4E-06 1.2E-10 70.8 5.4 65 38-103 27-98 (105)
347 1x4e_A RNA binding motif, sing 98.1 2.5E-06 8.6E-11 68.8 4.4 49 38-86 16-69 (85)
348 2cpd_A Apobec-1 stimulating pr 98.1 6.3E-06 2.1E-10 68.6 6.9 62 38-102 26-91 (99)
349 3ucg_A Polyadenylate-binding p 98.1 6.3E-06 2.2E-10 66.7 6.4 62 38-100 17-85 (89)
350 2rs2_A Musashi-1, RNA-binding 98.1 5.7E-06 2E-10 70.6 6.4 63 38-100 36-104 (109)
351 2hgm_A HNRPF protein, heteroge 98.1 2E-06 6.9E-11 76.5 3.7 74 409-488 41-121 (126)
352 2f3j_A RNA and export factor b 98.0 9.2E-06 3.2E-10 75.7 8.3 66 38-103 99-170 (177)
353 1x4c_A Splicing factor, argini 98.0 6.1E-06 2.1E-10 70.1 6.3 61 38-100 26-93 (108)
354 2cpi_A CCR4-NOT transcription 98.0 3E-06 1E-10 72.4 4.4 64 38-101 26-102 (111)
355 3tht_A Alkylated DNA repair pr 98.0 5.6E-06 1.9E-10 85.5 6.7 61 426-487 31-98 (345)
356 1fjc_A Nucleolin RBD2, protein 98.0 3.2E-06 1.1E-10 69.7 3.8 64 38-101 27-92 (96)
357 1rk8_A CG8781-PA, CG8781-PA pr 98.0 6.4E-06 2.2E-10 75.3 6.1 64 38-101 83-153 (165)
358 2j76_E EIF-4B, EIF4B, eukaryot 98.0 6.2E-06 2.1E-10 69.1 5.0 61 38-100 30-98 (100)
359 2jvr_A Nucleolar protein 3; RN 98.0 1.2E-05 4.1E-10 69.8 6.8 62 38-99 39-104 (111)
360 2wbr_A GW182, gawky, LD47780P; 98.0 1E-05 3.5E-10 68.1 6.0 59 38-97 18-78 (89)
361 2fc9_A NCL protein; structure 98.0 5.4E-06 1.8E-10 69.1 4.3 65 38-103 26-94 (101)
362 3beg_B Splicing factor, argini 97.9 1E-05 3.4E-10 69.8 6.0 59 38-98 27-87 (115)
363 2lkz_A RNA-binding protein 5; 97.9 7.1E-06 2.4E-10 69.1 4.9 60 38-97 20-92 (95)
364 2g4b_A Splicing factor U2AF 65 97.9 1.5E-05 5.1E-10 71.5 6.9 65 425-490 14-90 (172)
365 2pe8_A Splicing factor 45; RRM 97.9 1.3E-05 4.4E-10 68.7 6.0 60 40-99 26-93 (105)
366 2j8a_A Histone-lysine N-methyl 97.9 1.2E-05 4.2E-10 72.3 6.0 62 425-486 16-94 (136)
367 1fje_B Nucleolin RBD12, protei 97.9 5.1E-06 1.7E-10 75.1 3.6 79 408-491 11-94 (175)
368 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.9 1.4E-05 4.7E-10 70.1 6.3 59 38-96 74-139 (140)
369 2xs2_A Deleted in azoospermia- 97.9 3.1E-06 1.1E-10 70.7 2.0 64 38-101 20-87 (102)
370 1wi8_A EIF-4B, eukaryotic tran 97.9 1.8E-05 6.2E-10 66.3 6.4 64 38-103 26-97 (104)
371 2e5g_A U6 snRNA-specific termi 97.9 2.8E-05 9.6E-10 64.1 7.0 62 38-100 19-82 (94)
372 2yh0_A Splicing factor U2AF 65 97.9 1.3E-05 4.4E-10 73.6 5.5 64 38-101 125-195 (198)
373 3v4m_A Splicing factor U2AF 65 97.9 2.2E-05 7.5E-10 67.2 6.4 60 40-99 28-96 (105)
374 2ek1_A RNA-binding protein 12; 97.8 6.2E-06 2.1E-10 67.7 2.9 60 38-97 26-92 (95)
375 1jmt_A Splicing factor U2AF 35 97.8 2E-05 6.7E-10 67.3 5.7 56 42-97 41-103 (104)
376 2voo_A Lupus LA protein; RNA-b 97.8 1.3E-05 4.3E-10 75.7 4.9 61 38-98 120-185 (193)
377 2cqp_A RNA-binding protein 12; 97.8 9.5E-06 3.2E-10 67.1 3.3 63 38-100 26-95 (98)
378 2m2b_A RNA-binding protein 10; 97.8 3.6E-05 1.2E-09 67.6 7.1 62 38-100 34-108 (131)
379 3s6e_A RNA-binding protein 39; 97.8 3.6E-05 1.2E-09 67.1 7.0 60 40-99 30-92 (114)
380 1fj7_A Nucleolin RBD1, protein 97.8 2.2E-05 7.4E-10 65.4 5.2 63 38-101 28-96 (101)
381 2dng_A Eukaryotic translation 97.8 4E-05 1.4E-09 64.1 6.7 64 38-103 26-96 (103)
382 2lcw_A RNA-binding protein FUS 96.9 3.7E-06 1.3E-10 72.1 0.0 66 38-103 18-98 (116)
383 2dnr_A Synaptojanin-1; RRM dom 97.7 0.00012 4.2E-09 61.7 9.2 79 407-488 4-86 (91)
384 3n9u_C Cleavage and polyadenyl 97.7 2.6E-05 8.8E-10 71.3 5.4 63 38-100 66-137 (156)
385 3u1l_A PRE-mRNA-splicing facto 97.7 3.6E-05 1.2E-09 75.7 6.8 60 40-100 156-229 (240)
386 1wg5_A Heterogeneous nuclear r 97.7 4.7E-05 1.6E-09 64.2 6.7 62 38-100 26-94 (104)
387 2cpy_A RNA-binding protein 12; 97.7 1.9E-05 6.7E-10 67.7 4.0 63 38-101 26-95 (114)
388 1wg1_A KIAA1579 protein, homol 97.7 3.1E-05 1.1E-09 63.1 4.1 60 38-99 16-77 (88)
389 3q2s_C Cleavage and polyadenyl 97.7 3.8E-05 1.3E-09 74.4 5.4 63 38-100 79-150 (229)
390 3egn_A RNA-binding protein 40; 97.6 3.9E-05 1.3E-09 68.1 5.0 63 38-100 56-130 (143)
391 2dnl_A Cytoplasmic polyadenyla 97.6 3.7E-05 1.3E-09 65.9 4.5 57 38-95 19-83 (114)
392 2fc8_A NCL protein; structure 97.6 6E-05 2E-09 62.7 5.0 66 38-103 26-95 (102)
393 3dxb_A Thioredoxin N-terminall 97.5 0.00013 4.5E-09 69.2 7.1 61 426-486 140-211 (222)
394 1wel_A RNA-binding protein 12; 97.5 4.9E-05 1.7E-09 66.0 3.5 63 38-100 36-104 (124)
395 3pgw_S U1-70K; protein-RNA com 97.5 0.0001 3.5E-09 78.1 6.7 65 38-102 113-184 (437)
396 3ue2_A Poly(U)-binding-splicin 97.5 0.0001 3.5E-09 64.5 5.4 59 40-98 38-107 (118)
397 2diu_A KIAA0430 protein; struc 97.5 0.00014 4.8E-09 61.9 5.7 58 39-101 21-85 (96)
398 3tht_A Alkylated DNA repair pr 97.4 0.00016 5.6E-09 74.6 6.5 60 38-98 31-97 (345)
399 2dgw_A Probable RNA-binding pr 97.3 0.00025 8.6E-09 57.7 5.6 61 38-100 21-87 (91)
400 1wez_A HnRNP H', FTP-3, hetero 97.3 0.00018 6.2E-09 60.8 4.7 61 38-100 26-92 (102)
401 2hzc_A Splicing factor U2AF 65 97.3 0.00035 1.2E-08 56.0 6.2 56 38-95 17-85 (87)
402 2lmi_A GRSF-1, G-rich sequence 97.3 0.00018 6.3E-09 60.8 4.7 61 38-99 22-91 (107)
403 1owx_A Lupus LA protein, SS-B, 97.2 0.00054 1.9E-08 60.6 6.7 64 427-491 31-99 (121)
404 2hgl_A HNRPF protein, heteroge 97.2 0.00019 6.6E-09 64.3 3.8 61 38-98 55-123 (136)
405 1ufw_A Synaptojanin 2; RNP dom 97.2 0.00026 8.8E-09 60.2 4.1 78 406-486 11-93 (95)
406 2dha_A FLJ20171 protein; RRM d 97.2 0.0002 6.9E-09 63.1 3.5 46 38-83 34-87 (123)
407 2db1_A Heterogeneous nuclear r 97.2 0.00021 7.1E-09 61.8 3.4 60 38-98 28-96 (118)
408 2hgn_A Heterogeneous nuclear r 97.1 0.00027 9.3E-09 63.6 4.0 61 38-100 57-123 (139)
409 2dnn_A RNA-binding protein 12; 97.0 0.00088 3E-08 57.6 5.5 59 38-98 27-91 (109)
410 2j8a_A Histone-lysine N-methyl 96.7 0.00093 3.2E-08 60.1 3.5 59 37-95 16-91 (136)
411 2hgm_A HNRPF protein, heteroge 96.7 0.0015 5E-08 57.9 4.7 45 38-83 53-103 (126)
412 3dxb_A Thioredoxin N-terminall 96.4 0.0034 1.2E-07 59.4 5.5 61 37-97 139-210 (222)
413 1owx_A Lupus LA protein, SS-B, 96.3 0.0048 1.6E-07 54.5 5.7 62 38-100 30-96 (121)
414 3pq1_A Poly(A) RNA polymerase; 94.3 0.031 1E-06 59.8 4.5 55 410-470 53-107 (464)
415 1ufw_A Synaptojanin 2; RNP dom 94.2 0.047 1.6E-06 46.3 4.6 55 42-99 39-94 (95)
416 2dnr_A Synaptojanin-1; RRM dom 93.9 0.053 1.8E-06 45.6 4.4 54 42-99 30-85 (91)
417 2l9w_A U4/U6 snRNA-associated- 93.9 0.084 2.9E-06 46.1 5.6 58 425-483 31-95 (117)
418 3pq1_A Poly(A) RNA polymerase; 92.4 0.05 1.7E-06 58.1 2.6 49 38-87 63-111 (464)
419 2dhx_A Poly (ADP-ribose) polym 91.4 0.94 3.2E-05 38.9 8.8 60 425-487 18-83 (104)
420 2l9w_A U4/U6 snRNA-associated- 91.2 0.31 1.1E-05 42.5 5.6 43 38-81 32-79 (117)
421 1wwh_A Nucleoporin 35, nucleop 86.2 1.4 4.7E-05 38.7 6.4 58 428-486 36-95 (119)
422 2dhx_A Poly (ADP-ribose) polym 84.6 4.9 0.00017 34.4 8.8 58 38-98 19-82 (104)
423 1whv_A Poly(A)-specific ribonu 81.8 2.2 7.6E-05 36.3 5.5 43 426-471 26-68 (100)
424 3ctr_A Poly(A)-specific ribonu 81.3 0.79 2.7E-05 39.1 2.6 42 39-83 17-58 (101)
425 1whv_A Poly(A)-specific ribonu 80.8 0.83 2.9E-05 38.9 2.5 55 39-98 27-81 (100)
426 1wey_A Calcipressin 1; structu 76.1 5.9 0.0002 33.9 6.5 59 430-489 25-85 (104)
427 2pzi_A Probable serine/threoni 74.0 1.8 6.1E-05 47.4 3.5 46 251-304 628-675 (681)
428 3ctr_A Poly(A)-specific ribonu 73.6 2.1 7.2E-05 36.5 3.0 43 426-471 16-58 (101)
429 1wwh_A Nucleoporin 35, nucleop 69.8 8.4 0.00029 33.7 6.1 51 38-90 31-84 (119)
430 3p3d_A Nucleoporin 53; structu 59.4 5.1 0.00017 35.7 2.7 60 428-487 19-98 (132)
431 1f5n_A Interferon-induced guan 50.0 2.4E+02 0.0081 30.7 14.6 25 295-319 440-466 (592)
432 1wey_A Calcipressin 1; structu 38.3 41 0.0014 28.6 4.9 57 41-98 24-82 (104)
433 1f5n_A Interferon-induced guan 36.5 3.3E+02 0.011 29.6 13.0 13 38-51 22-34 (592)
434 3d45_A Poly(A)-specific ribonu 29.5 62 0.0021 34.5 5.8 52 38-95 450-502 (507)
435 3p3d_A Nucleoporin 53; structu 27.1 52 0.0018 29.2 3.8 60 38-98 14-97 (132)
436 3d45_A Poly(A)-specific ribonu 26.8 99 0.0034 32.9 6.8 43 426-471 450-492 (507)
437 3lay_A Zinc resistance-associa 26.7 3.7E+02 0.013 24.6 10.9 25 359-383 110-134 (175)
438 2q2f_A Selenoprotein S; anti-p 26.3 1.8E+02 0.0063 23.9 6.6 26 326-351 44-69 (89)
439 1uw4_A UPF3X; nonsense mediate 24.4 1.9E+02 0.0065 23.7 6.6 45 426-470 12-63 (91)
440 4aj5_1 SKA3, spindle and kinet 23.1 29 0.001 29.4 1.4 12 41-52 90-101 (101)
441 3s9g_A Protein hexim1; cyclin 22.1 3.6E+02 0.012 22.7 8.0 21 365-385 68-88 (104)
442 1wlq_A Geminin; coiled-coil; 2 21.2 3.4E+02 0.012 22.1 7.6 61 299-383 6-66 (83)
443 2crj_A SWI/SNF-related matrix- 20.5 2.8E+02 0.0094 22.0 6.9 44 271-319 20-63 (92)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=145.26 Aligned_cols=70 Identities=40% Similarity=0.561 Sum_probs=65.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
...|||+||||+++++..+||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 4569999999999999999999999999999999998778899999999999999999999999998753
No 2
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=151.96 Aligned_cols=72 Identities=40% Similarity=0.644 Sum_probs=67.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
...|||+||||+++|+.++||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++...
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 89 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ 89 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence 357999999999999999999999999999999999877889999999999999999999999999998653
No 3
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.74 E-value=1.3e-18 Score=147.23 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=65.6
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------KKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 248 ~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~------~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
.+...|||+||||+++|+..+||+|||+|+++||||+++.+ +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 34567999999999999999999999999999999998743 5678999999999999999999999998764
No 4
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3.9e-18 Score=148.81 Aligned_cols=73 Identities=37% Similarity=0.561 Sum_probs=68.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 323 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~ 323 (512)
..|||+||||+++|+.++||+|||+|+++||||++++++++.+.|+.|++||++|+||.+|..||.++.....
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 5699999999999999999999999999999999988888999999999999999999999999998876543
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=147.33 Aligned_cols=71 Identities=30% Similarity=0.475 Sum_probs=66.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
...|||+||||+++|+.++||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 35699999999999999999999999999999999987788999999999999999999999999986543
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.74 E-value=1.9e-18 Score=141.17 Aligned_cols=68 Identities=37% Similarity=0.580 Sum_probs=63.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
+.|||+||||+++++.++||+|||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4599999999999999999999999999999999974 6788999999999999999999999999874
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.73 E-value=3.2e-18 Score=138.56 Aligned_cols=67 Identities=45% Similarity=0.695 Sum_probs=61.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
...|||+||||+++++..+||+|||+|+++||||+++++ .+.|+.|++||++|+||.+|..||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 467999999999999999999999999999999999764 4799999999999999999999999764
No 8
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=140.57 Aligned_cols=69 Identities=36% Similarity=0.557 Sum_probs=64.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
...|||+||||+++++..+||+|||+|+++||||+++ .+.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 3569999999999999999999999999999999997 47889999999999999999999999998763
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=141.31 Aligned_cols=69 Identities=42% Similarity=0.638 Sum_probs=63.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
..|||+||||+++++.++||+|||+|+++||||++++.. .+.+.|+.|++||++|+||.+|..||.++.
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 459999999999999999999999999999999998653 678899999999999999999999998763
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=142.83 Aligned_cols=70 Identities=33% Similarity=0.506 Sum_probs=65.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
...|||+||||+++|+.++||+|||+|+++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 3569999999999999999999999999999999998 588999999999999999999999999998764
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=4.2e-18 Score=142.86 Aligned_cols=68 Identities=40% Similarity=0.580 Sum_probs=64.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
..|||+||||+++|+.++||+|||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 5699999999999999999999999999999999974 6788999999999999999999999999864
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=142.90 Aligned_cols=70 Identities=43% Similarity=0.661 Sum_probs=64.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
.|||+||||+++|+.++||+|||+|+++||||++++. +.+.+.|+.|++||++|+||.+|..||.++...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 3899999999999999999999999999999999865 458899999999999999999999999987643
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-18 Score=141.95 Aligned_cols=69 Identities=43% Similarity=0.659 Sum_probs=64.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
..|||+||||+++++..+||+|||+|+++||||+++++ +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 45999999999999999999999999999999999865 4688999999999999999999999998763
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.6e-17 Score=140.59 Aligned_cols=69 Identities=41% Similarity=0.627 Sum_probs=63.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 321 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 321 (512)
...|||+||||+++++.++||+|||+|+++||||+++++ .+.|+.|++||++|+||.+|..||.++...
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 74 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEA 74 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence 467999999999999999999999999999999999765 369999999999999999999999988654
No 15
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.69 E-value=3.1e-17 Score=154.34 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=63.7
Q ss_pred CCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As--~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++++ ..+||++||+|+++||||++++.+. |.+.|..|++||++|+||.+|+.||..+.+
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 79 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQG 79 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccC
Confidence 459999999999988 9999999999999999999987653 678999999999999999999999998764
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.69 E-value=3.5e-18 Score=147.35 Aligned_cols=70 Identities=40% Similarity=0.627 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++|+.++||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 3599999999999999999999999999999999987778899999999999999999999999998754
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.68 E-value=2.3e-17 Score=143.54 Aligned_cols=71 Identities=31% Similarity=0.448 Sum_probs=65.5
Q ss_pred CCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDC-SEQDIRSAYRKKALKCHPDKNPD---DKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 250 ~~~d~YeiLgv~~~A-s~~eIKkAYRkLa~k~HPDk~~~---~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
...|||+||||+++| +.++||+|||+|+++||||++++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 357999999999999 99999999999999999999975 356889999999999999999999999998864
No 18
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.67 E-value=4.2e-17 Score=153.10 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=63.0
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
+|||+||||++++ +..+||++||+|+++||||++++.+. |.+.|..|++||++|+||.+|+.||..+.+
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 76 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence 3899999999999 99999999999999999999987643 567999999999999999999999998764
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=147.56 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=66.7
Q ss_pred ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK------KAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 247 ~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~------~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
......|||+||||+++++.++||+|||+|+++||||++++++ .|.+.|..|++||++|+||.+|+.||..+..
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~ 84 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE 84 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence 3455679999999999999999999999999999999987653 3679999999999999999999999998764
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.65 E-value=7.2e-17 Score=153.15 Aligned_cols=69 Identities=39% Similarity=0.632 Sum_probs=65.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
.|||+||||+++|+.++||+|||+|+++||||++++++++.+.|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 389999999999999999999999999999999988888999999999999999999999999998854
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-17 Score=135.71 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=59.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhH
Q psy3926 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAA 313 (512)
Q Consensus 249 ~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~ 313 (512)
+...|||+||||+++|+.++||+|||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 456899999999999999999999999999999999974 6788999999999999999998853
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=150.25 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926 251 DLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR 320 (512)
Q Consensus 251 ~~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 320 (512)
..|||+||||+++ ++..+||++||+|+++||||++++++. |.+.|..|++||++|+||.+|+.||..+.+
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G 118 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG 118 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 5699999999986 799999999999999999999986532 567899999999999999999999986653
No 23
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=130.31 Aligned_cols=84 Identities=31% Similarity=0.603 Sum_probs=76.9
Q ss_pred CCCCcceEEEEeecCCCC--CCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEee
Q psy3926 19 NPENYRLRIRWKSSSTDT--DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNY 96 (512)
Q Consensus 19 ~~~~~~lk~~Wk~~~~~~--~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~ 96 (512)
+.+.++|||+|++.++|+ .+++++.|+++|++||+|.+|.|..+.+|.|+|||.+.++|+.|+....|+..+||+|.|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~ 86 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISW 86 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEEC
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEE
Confidence 567899999999987654 579999999999999999999988888999999999999999999999999999999999
Q ss_pred cCCCcc
Q psy3926 97 LNPDVE 102 (512)
Q Consensus 97 l~~~~~ 102 (512)
..+.+.
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 986644
No 24
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.8e-15 Score=126.42 Aligned_cols=89 Identities=29% Similarity=0.561 Sum_probs=78.0
Q ss_pred CCCCCcceeEEEeecCCCCC--CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEE
Q psy3926 405 KLNPENYRLRIRWKSSSTDT--DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTL 482 (512)
Q Consensus 405 ~~~~~~~~lkVKWk~~~~~~--~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V 482 (512)
..++..++|+|+|+.+.++. ..+|+++|+++|++||.|.+|.|+...+|+|||+|++.++|..||....++.+.+|+|
T Consensus 5 ~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 5 SSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp CCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 34567899999999986432 5799999999999999999999998889999999999999999999888888999999
Q ss_pred EecCCCccccc
Q psy3926 483 NYLNPDVEREE 493 (512)
Q Consensus 483 ~wa~~~~~r~~ 493 (512)
.|+.+++.+..
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T 2d9o_A 85 SWLEGQPQDAS 95 (100)
T ss_dssp ECSSCCCCCCS
T ss_pred EEccCCCCCCC
Confidence 99998776543
No 25
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.58 E-value=2.1e-15 Score=142.80 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=59.9
Q ss_pred CCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926 251 DLDLYGLL------ELTI-DCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVI 318 (512)
Q Consensus 251 ~~d~YeiL------gv~~-~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 318 (512)
..|||+|| |+++ +++..+||+|||+|+++||||++++ +.+.|..|++||++|+||.+|..||..+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 45999999 4665 8999999999999999999999975 5689999999999999999999999987
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.54 E-value=1.6e-15 Score=127.79 Aligned_cols=62 Identities=27% Similarity=0.367 Sum_probs=56.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhh
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARA 312 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~ 312 (512)
..++|+||||+++|+.++||+|||+|+++||||++++++ .|.+.|+.|++||++|+|...|.
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 358999999999999999999999999999999998763 58899999999999999987663
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.54 E-value=4.9e-16 Score=159.64 Aligned_cols=69 Identities=35% Similarity=0.497 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
...|||+||||+++|+.++||+|||+|+++||||++++ +.|.++|++|++||++|+||.+|+.||+++.
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 34699999999999999999999999999999999974 5788999999999999999999999999854
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.54 E-value=1.6e-15 Score=143.53 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=59.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHccChhhhhHH
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK---AIETFHLLSKAIEVLLDKSARAAY 314 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~---a~~~F~~I~~AYevLsDp~~R~~Y 314 (512)
...|||+||||+++|+..+||+|||+|+++|||||+++.+. |.+.|+.|++||++|+||.+|+.|
T Consensus 115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 34799999999999999999999999999999999976543 789999999999999999999876
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.52 E-value=2.9e-15 Score=127.24 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHccC
Q psy3926 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK---KAIETFHLLSKAIEVLLD 307 (512)
Q Consensus 252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~---~a~~~F~~I~~AYevLsD 307 (512)
.++|++|||+++|+..+||+|||+++++|||||+++++ .|.+.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998764 378899999999999974
No 30
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.51 E-value=7.9e-16 Score=135.57 Aligned_cols=62 Identities=29% Similarity=0.315 Sum_probs=57.9
Q ss_pred CCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHH
Q psy3926 252 LDLYGLLELTIDCSE--QDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSV 317 (512)
Q Consensus 252 ~d~YeiLgv~~~As~--~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~ 317 (512)
.+||+||||+++|+. .+||+|||+|+++||||++++ .++|+.|++||++|+||.+|+.||.+
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 489999999999999 999999999999999999975 37999999999999999999999854
No 31
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.50 E-value=5e-15 Score=122.12 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=54.3
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHH
Q psy3926 252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAY 314 (512)
Q Consensus 252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~Y 314 (512)
.++|+||||+++ ++..+||+|||+|+++||||++++ .+.|+.|++||++|+|+.+|..+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH
Confidence 489999999999 999999999999999999999863 47999999999999999888763
No 32
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.49 E-value=1.3e-15 Score=143.24 Aligned_cols=64 Identities=28% Similarity=0.295 Sum_probs=57.3
Q ss_pred CCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 252 LDLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 252 ~d~YeiLgv~~~As--~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
.|||+||||+++|+ .++||+|||+|++++|||++++. +.|+.|++||++|+||.+|+.||.++.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 58999999999998 69999999999999999999752 799999999999999999999999885
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.49 E-value=7.4e-15 Score=127.76 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHHHHHHHccChh
Q psy3926 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD---DK----KAIETFHLLSKAIEVLLDKS 309 (512)
Q Consensus 250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~---~~----~a~~~F~~I~~AYevLsDp~ 309 (512)
.+.|||+|||++. |+..+||+|||+|+++|||||+++ ++ .|.+.|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4579999999996 999999999999999999999863 12 46889999999999999986
No 34
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.5e-14 Score=114.01 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=50.9
Q ss_pred CCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhh
Q psy3926 252 LDLYGLLELTI-DCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311 (512)
Q Consensus 252 ~d~YeiLgv~~-~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R 311 (512)
.++|+||||++ +++.++||+|||+|+++||||+++ ++ +.|.+|++||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g-~~---~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-SP---FLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-CH---HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHhhhhhc
Confidence 48999999999 799999999999999999999974 33 6999999999999998765
No 35
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=4.4e-12 Score=114.04 Aligned_cols=61 Identities=28% Similarity=0.394 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCC--CceEEEec
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPN--CPLTLNYL 485 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~--~pL~V~wa 485 (512)
..+|++.|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+ .+|.|.||
T Consensus 99 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 99 RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 369999999999999999999988654 6999999999999999997 3555544 89999997
No 36
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.39 E-value=2.5e-14 Score=160.23 Aligned_cols=72 Identities=39% Similarity=0.609 Sum_probs=40.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 322 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~ 322 (512)
+.|||+||||+++|+.++||+|||+|+++||||++++++++.+.|+.|++||++|+||.+|+.||.++....
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 569999999999999999999999999999999998778899999999999999999999999999986543
No 37
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=2.3e-11 Score=113.26 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHhhccC-CeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCC-CCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYG-KINILVISPKKRGSALLEFEHADSARRAKL--YELGLP-NCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG-~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~-~~pL~V~wa~~~ 488 (512)
..+|++.|+++|+.|| .|..|.|..+.+|+|||+|.+.++|.+|+. ++..+. +.+|.|.|+.++
T Consensus 130 ~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 130 PSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4689999999999999 999999987779999999999999999997 466667 899999999875
No 38
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=2.1e-11 Score=108.99 Aligned_cols=61 Identities=25% Similarity=0.404 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCC--CceEEEec
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPN--CPLTLNYL 485 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~--~pL~V~wa 485 (512)
..+|+++|+++|+.||.|..|.|..+. +|+|||+|.+.++|.+|+. ++..+.+ .+|.|.||
T Consensus 98 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 98 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 368999999999999999999987654 7999999999999999997 4555555 57999997
No 39
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.34 E-value=5.1e-11 Score=111.57 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++....
T Consensus 135 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 135 QDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp TTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred CcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 369999999999999999999998753 7999999999999999997 47778889999999998766553
No 40
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.4e-11 Score=108.60 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~ 487 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.||..
T Consensus 97 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 97 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 368999999999999999999987542 7899999999999999997 46667789999999863
No 41
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.33 E-value=1.2e-10 Score=111.95 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=62.2
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccC-CeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCC-CCceEEEec
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYG-KINILVISPKKRGSALLEFEHADSARRAKL--YELGLP-NCPLTLNYL 485 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG-~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~-~~pL~V~wa 485 (512)
.++|-|. +.+..+|++.|+++|+.|| .|..|.|..+.+|+|||+|.+.++|.+|+. ++..+. +.+|.|.|+
T Consensus 151 ~~~l~V~-----nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 151 SATLHLS-----NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSEEEEE-----CCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCEEEEe-----CCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 3566664 2224689999999999999 999999977778999999999999999997 466666 899999999
Q ss_pred CCC
Q psy3926 486 NPD 488 (512)
Q Consensus 486 ~~~ 488 (512)
.++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 865
No 42
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.32 E-value=1.3e-11 Score=110.99 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=56.7
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~ 489 (512)
.+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|++. +..+.+.+|.|.|+.+++
T Consensus 98 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 98 DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCCC
T ss_pred CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCCC
Confidence 58999999999999999999987643 69999999999999999973 567788999999998763
No 43
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.30 E-value=2.8e-11 Score=111.67 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|++.|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|.|+.++.+..
T Consensus 114 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 114 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence 369999999999999999999988653 79999999999999999964 455667899999998876664
No 44
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=9.5e-11 Score=105.74 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCCC---CCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGLP---NCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~~---~~pL~V~wa~ 486 (512)
..+|++.|+++|+.||.|.+|.|..+. +|+|||+|.+.++|.+|+.. +..+. +.+|.|.||.
T Consensus 105 ~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 105 KKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 369999999999999999999988653 78999999999999999973 33344 3899999984
No 45
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=7.5e-10 Score=108.70 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=61.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCC-CCceEEEec
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLP-NCPLTLNYL 485 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~-~~pL~V~wa 485 (512)
..++|-|.=- ...+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|+.. +..+. +.+|+|.|+
T Consensus 206 ~~~~l~v~nl-----~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNL-----PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCC-----CCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3456666422 236999999999999999999999988889999999999999999973 55566 789999998
Q ss_pred C
Q psy3926 486 N 486 (512)
Q Consensus 486 ~ 486 (512)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 46
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.20 E-value=2.1e-10 Score=103.65 Aligned_cols=62 Identities=11% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.||.
T Consensus 104 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 104 NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 368999999999999999999998764 7999999999999999997 4666778999999983
No 47
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.18 E-value=3.2e-10 Score=111.14 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh--h----cCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--E----LGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~--~----~~~~~~pL~V~wa~~~~ 489 (512)
..+|++.|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+.. + .+..+.||.|.|+.+..
T Consensus 106 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 106 PVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 36899999999999999999998764 379999999999999999974 3 33347899999998753
No 48
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.17 E-value=2.9e-10 Score=112.15 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=62.0
Q ss_pred CcceeEEEeecCCCCCCC-CCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDV-YTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL-YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~-~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL 480 (512)
...+|.|+--. .. +|++.|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 209 ~~~~l~v~nlp-----~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i 283 (292)
T 2ghp_A 209 EGREIMIRNLS-----TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREI 283 (292)
T ss_dssp TTTEEEEEEEC-----TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEE
T ss_pred CCceEEEECCC-----cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEE
Confidence 34567766332 25 899999999999999999998754 36999999999999999993 2566778999
Q ss_pred EEEecCCCc
Q psy3926 481 TLNYLNPDV 489 (512)
Q Consensus 481 ~V~wa~~~~ 489 (512)
.|.|+.++|
T Consensus 284 ~V~~a~~k~ 292 (292)
T 2ghp_A 284 SVSLADKKP 292 (292)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998865
No 49
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.08 E-value=1.2e-09 Score=107.23 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=59.3
Q ss_pred CC-CHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 426 VY-TRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 426 ~~-te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
.+ |+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++.+..
T Consensus 195 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 195 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 269 (284)
T ss_dssp TCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHH
T ss_pred ccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccc
Confidence 55 89999999999999999998764 37999999999999999997 46667889999999998877653
No 50
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.08 E-value=1.7e-09 Score=99.76 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=64.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|.= .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 113 ~~~~l~v~n-----l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 113 SAHKLFIGG-----LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCEEEEEC-----CCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345666651 22368999999999999999999998764 7999999999999999997 46667789999
Q ss_pred EEecCCCccc
Q psy3926 482 LNYLNPDVER 491 (512)
Q Consensus 482 V~wa~~~~~r 491 (512)
|.|+.+++..
T Consensus 188 v~~a~~~~~~ 197 (198)
T 2yh0_A 188 VQRASVGAKN 197 (198)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887553
No 51
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.07 E-value=5.5e-10 Score=101.51 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|..|......+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++|
T Consensus 109 ~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 109 FNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp SSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 3699999999999999997771112458999999999999999997 4677778999999998764
No 52
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.02 E-value=2.6e-09 Score=104.88 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++...
T Consensus 105 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 105 PSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred CcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 368999999999999999999887543 7899999999999999995 466677889999999865443
No 53
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-09 Score=90.52 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|.+|.|..+.+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++.+.
T Consensus 10 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 10 TGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp SSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 4699999999999999999999988778999999999999999997 5778889999999999877554
No 54
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.99 E-value=6.1e-10 Score=94.38 Aligned_cols=63 Identities=24% Similarity=0.389 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~ 487 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.||+|
T Consensus 29 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 469999999999999999999988643 6899999999999999996 46777889999999964
No 55
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.99 E-value=3.5e-09 Score=104.38 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHhhccC-CeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYG-KINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG-~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|++.|+++|+.|| .|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+....
T Consensus 127 ~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 127 PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp TTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 3699999999999999 9999998764 38999999999999999997 466677899999999865443
No 56
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=1.8e-09 Score=90.09 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=64.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCC--CCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLP--NCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~--~~pL~V~w 484 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+. ++..+. +.+|.|.|
T Consensus 16 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVG-----GLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEE-----CCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34566663 22246999999999999999999999876 8999999999999999997 456667 89999999
Q ss_pred cCCCccc
Q psy3926 485 LNPDVER 491 (512)
Q Consensus 485 a~~~~~r 491 (512)
+.+++.+
T Consensus 90 a~~~~~~ 96 (97)
T 1why_A 90 AKSGPSS 96 (97)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9988765
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=6.5e-10 Score=96.34 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEE
Q psy3926 407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTL 482 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V 482 (512)
....++|-|. +.+..+||++|+++|++||.|.+|.|..+ +|+|||+|++.++|..||.. + ..+.+.+|.|
T Consensus 13 ~~~~~~LfV~-----nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIR-----KLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEEC-----SCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3345566662 22346999999999999999999999876 79999999999999999973 2 3467899999
Q ss_pred EecCCCcccc
Q psy3926 483 NYLNPDVERE 492 (512)
Q Consensus 483 ~wa~~~~~r~ 492 (512)
.|+.+++...
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765554
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.95 E-value=3.8e-09 Score=91.73 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++....
T Consensus 17 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 91 (116)
T 2fy1_A 17 RETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSG 91 (116)
T ss_dssp TTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCCC
Confidence 469999999999999999999998753 7999999999999999997 46777889999999998766554
No 59
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.95 E-value=4.6e-10 Score=93.48 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHhhccC-CeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh---hcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYG-KINILVISPK-----KRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG-~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~---~~~~~~~pL~V~wa~~~~~r 491 (512)
..+||++|+++|+.|| .|.+|.|+.+ .+|+|||+|.+.++|.+|+.. ...+.+.+|.|.|+.+++..
T Consensus 11 ~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 11 QAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp SSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred CCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 4799999999999999 8999988764 379999999999999999963 34467899999999887654
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=6e-09 Score=86.89 Aligned_cols=79 Identities=23% Similarity=0.198 Sum_probs=64.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|.= .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 7 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 7 GSGRLFVRN-----LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp SCEEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 445666651 22369999999999999999999997643 7999999999999999996 46677889999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.+++.+.
T Consensus 82 V~~a~~~~~~~ 92 (99)
T 1whw_A 82 VLPSTIKKEAS 92 (99)
T ss_dssp EEECCCCSTTC
T ss_pred EEEcCCCcccc
Confidence 99999876654
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.94 E-value=3e-09 Score=89.71 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=64.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCC---Cc
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPN---CP 479 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~---~p 479 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+ .+
T Consensus 14 ~~~~l~v~-----nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 14 RDRKLFVG-----MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CCCEEEEE-----SCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 44566653 122369999999999999999999998754 7999999999999999997 4555666 89
Q ss_pred eEEEecCCCccccc
Q psy3926 480 LTLNYLNPDVEREE 493 (512)
Q Consensus 480 L~V~wa~~~~~r~~ 493 (512)
|.|.|+.+++++..
T Consensus 89 l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 89 LVVKFADTDKESGP 102 (105)
T ss_dssp CEEEESCSSCCCSC
T ss_pred EEEEECccCcccCC
Confidence 99999998877653
No 62
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=3.3e-09 Score=91.19 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=62.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC--CCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~--~~~~pL~V~w 484 (512)
..++|-|.= .+..+|+++|+++|++||.|.+|.|..+ +|+|||+|++.++|.+|+.. +.+ +.+.+|.|.|
T Consensus 14 p~~~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 445676652 2246999999999999999999998765 79999999999999999973 333 7789999999
Q ss_pred cCCCccc
Q psy3926 485 LNPDVER 491 (512)
Q Consensus 485 a~~~~~r 491 (512)
+..+..+
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9865443
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.7e-09 Score=92.48 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=63.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V~w 484 (512)
..++|-|.- .+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|++.++|..|+.. . ..+.+.+|.|.|
T Consensus 14 p~~~l~V~n-----Lp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRK-----LPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEES-----CCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 445677752 2236999999999999999999998875 89999999999999999973 2 336789999999
Q ss_pred cCCCcccc
Q psy3926 485 LNPDVERE 492 (512)
Q Consensus 485 a~~~~~r~ 492 (512)
+.++....
T Consensus 88 a~~~~~~~ 95 (101)
T 2cq1_A 88 SNHKELKT 95 (101)
T ss_dssp CSCSSCCC
T ss_pred cCcccCcC
Confidence 98765554
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=8.3e-09 Score=84.80 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 485 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa 485 (512)
...++|-|. +.+..+|+++|+++|+.||.|.+|.|. +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+
T Consensus 6 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIG-----NLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEE-----SCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEe-----CCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345566664 122469999999999999999999987 7999999999999999996 456678899999999
Q ss_pred CCCcccc
Q psy3926 486 NPDVERE 492 (512)
Q Consensus 486 ~~~~~r~ 492 (512)
.+++.+.
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 8876654
No 65
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=3.9e-09 Score=89.14 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHH---hhcCCCCC
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKL---YELGLPNC 478 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~---~~~~~~~~ 478 (512)
...++|-|. +.+..+|+++|+++|+.||.|..|.|..+. +|+|||+|.+.++|.+|+. ++..+.+.
T Consensus 13 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 13 QTTSKILVR-----NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCCCEEEE-----SCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCEEEEe-----CCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 345566664 222369999999999999999999998763 8999999999999999996 46677889
Q ss_pred ceEEEecCCCcccc
Q psy3926 479 PLTLNYLNPDVERE 492 (512)
Q Consensus 479 pL~V~wa~~~~~r~ 492 (512)
+|.|.|+.+++...
T Consensus 88 ~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 RLVLEWADSEVTVQ 101 (107)
T ss_dssp BCEEEECCCCCCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999999876654
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.91 E-value=2.1e-09 Score=87.28 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++|
T Consensus 16 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 16 PEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 369999999999999999999998653 7999999999999999997 4666778999999998765
No 67
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=1.8e-09 Score=92.80 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC--CCCCceEEEecCCCc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPDV 489 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~--~~~~pL~V~wa~~~~ 489 (512)
.+|+++|+++|+.||.|.+|.|..+ +|+|||+|++.++|..||.. +.+ +.+.+|.|.|+.+..
T Consensus 27 ~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 27 KNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp SSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 6899999999999999999999865 59999999999999999974 333 678999999998644
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.90 E-value=2.1e-09 Score=87.32 Aligned_cols=67 Identities=27% Similarity=0.384 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++.+|
T Consensus 14 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~R 88 (88)
T 4a8x_A 14 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR 88 (88)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCCC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCCC
Confidence 46899999999999999999998753 47999999999999999997 567778899999999887664
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=5.4e-09 Score=87.31 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL-YELGLPNCPLT 481 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~ 481 (512)
...++|-|.= .+..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 8 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGG-----IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp SSCCEEEEES-----CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 3456676642 2236999999999999999999999864 37999999999999999997 45667789999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.++..+.
T Consensus 83 V~~a~~~~~~~ 93 (99)
T 2dgs_A 83 VKRAEPRDSKS 93 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccC
Confidence 99998876654
No 70
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.9e-09 Score=85.06 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++.+.
T Consensus 15 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 15 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence 369999999999999999999998653 7999999999999999997 5777888999999998876654
No 71
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.89 E-value=4.2e-09 Score=90.37 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=65.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. +.+..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 14 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 14 NHFHVFVG-----DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp TCEEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCcEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566664 122369999999999999999999998754 7999999999999999997 45667789999
Q ss_pred EEecCCCccccc
Q psy3926 482 LNYLNPDVEREE 493 (512)
Q Consensus 482 V~wa~~~~~r~~ 493 (512)
|.|+.+++.+..
T Consensus 89 V~~a~~~~~~~~ 100 (115)
T 2dgo_A 89 TNWATRKPPAPK 100 (115)
T ss_dssp EEESSCCCCCSC
T ss_pred EEEccCCCCCCc
Confidence 999998766654
No 72
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.89 E-value=2.3e-09 Score=96.28 Aligned_cols=64 Identities=30% Similarity=0.436 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCce-EEEEEcCHHHHHHHHHh--hcCCCC--CceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGS-ALLEFEHADSARRAKLY--ELGLPN--CPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~-A~V~F~s~~~A~~Ai~~--~~~~~~--~pL~V~wa~~~ 488 (512)
-.+|+++|+++|++||.|.+|+|..+.+|+ |||+|.+.++|..|+.. +..+.+ .+|+|+|+++.
T Consensus 38 ~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 38 YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 369999999999999999999998877787 99999999999999974 555555 78999999865
No 73
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.88 E-value=2.6e-09 Score=92.38 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.++.++..
T Consensus 15 ~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~ 88 (115)
T 4f25_A 15 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 88 (115)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC---
T ss_pred CCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccc
Confidence 469999999999999999999988654 7999999999999999996 46667789999999988766643
No 74
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5.2e-09 Score=87.57 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=64.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V 482 (512)
..++|-|.= .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 16 ~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 16 EKHKLFISG-----LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CCSCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445677651 22369999999999999999999998654 6999999999999999996 467778899999
Q ss_pred EecCCCccc
Q psy3926 483 NYLNPDVER 491 (512)
Q Consensus 483 ~wa~~~~~r 491 (512)
.|+.+++.+
T Consensus 91 ~~a~~~~~~ 99 (100)
T 2do4_A 91 AISNSGPSS 99 (100)
T ss_dssp EECCCCSCC
T ss_pred EECCCCCCC
Confidence 999987764
No 75
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.9e-09 Score=88.10 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=63.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|.= . .+|+++|+++|+.||.|.+|.|. ..+|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.
T Consensus 14 ~~~~l~V~n---~----~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYG---E----DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEEC---S----SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcC---C----CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 445676652 1 59999999999999999999985 568999999999999999996 4666778999999998
Q ss_pred CCcccc
Q psy3926 487 PDVERE 492 (512)
Q Consensus 487 ~~~~r~ 492 (512)
+++.+.
T Consensus 86 ~~~~~~ 91 (97)
T 1x5p_A 86 KQPMLD 91 (97)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876654
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=5.3e-09 Score=87.99 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=66.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~ 483 (512)
..++|-|.=- +..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.
T Consensus 14 ~~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNL-----DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp SCCCEEEECC-----CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4456666522 236999999999999999999998864 47999999999999999997 4677888999999
Q ss_pred ecCCCccccc
Q psy3926 484 YLNPDVEREE 493 (512)
Q Consensus 484 wa~~~~~r~~ 493 (512)
|+.++.++..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998776653
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=5.9e-09 Score=88.98 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCC-----CceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPN-----CPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~-----~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|..|.|..+ |+|||+|.+.++|.+||.. +..+.+ .+|.|.|+.+++...
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 25 PSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp SSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence 46999999999999999999999877 9999999999999999973 445555 799999999866543
No 78
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.5e-09 Score=93.62 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=63.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V~w 484 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|++.++|.+||.. + ..+.+.+|.|.|
T Consensus 30 ps~~LfVg-----NLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIR-----KLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEE-----SCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 44566664 12236999999999999999999999876 79999999999999999973 2 457789999999
Q ss_pred cCCCcccc
Q psy3926 485 LNPDVERE 492 (512)
Q Consensus 485 a~~~~~r~ 492 (512)
+.+++...
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98765544
No 79
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.86 E-value=2.2e-09 Score=89.13 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=58.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~ 488 (512)
..++|-|.- .+..+|+++|+++|++||.|.+|.|..+.+|+|||+|.+.++|.++........+.+|.|.|+.++
T Consensus 10 ~~~~l~V~~-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 10 HGSKVFVGR-----CTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -CCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCC
Confidence 445565532 123699999999999999999999998889999999999999996644444455788999999876
Q ss_pred cc
Q psy3926 489 VE 490 (512)
Q Consensus 489 ~~ 490 (512)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 80
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=5.1e-09 Score=89.24 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=65.3
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 485 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa 485 (512)
...++|-|.= .+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+
T Consensus 23 ~~~~~l~V~n-----l~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGG-----IASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEEC-----CSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3456776632 1236999999999999999999999876 8999999999999999996 466677899999999
Q ss_pred CCCcccc
Q psy3926 486 NPDVERE 492 (512)
Q Consensus 486 ~~~~~r~ 492 (512)
.+++...
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 9876654
No 81
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=5.4e-09 Score=88.24 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=63.7
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. + .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 22 ~~~~l~V~-n----lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 22 EGWILFVT-G----VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TBEEEEEE-C----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEe-C----CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 44566665 1 22369999999999999999999998543 6999999999999999997 46777889999
Q ss_pred EEecCCCcc
Q psy3926 482 LNYLNPDVE 490 (512)
Q Consensus 482 V~wa~~~~~ 490 (512)
|.|+.++++
T Consensus 97 V~~a~~~~~ 105 (106)
T 1p27_B 97 VDWCFVRGP 105 (106)
T ss_dssp EEESEESSC
T ss_pred EEeecCCCC
Confidence 999987665
No 82
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=6.4e-09 Score=87.48 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=64.6
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~ 483 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.
T Consensus 14 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 14 QPRTLYVG-----NLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCEEEEE-----SCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEe-----CCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 44566664 12236899999999999999999999874 47999999999999999997 4666778999999
Q ss_pred ecCCCcccc
Q psy3926 484 YLNPDVERE 492 (512)
Q Consensus 484 wa~~~~~r~ 492 (512)
|+.++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999876654
No 83
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=7.8e-09 Score=86.94 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=65.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~ 483 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.
T Consensus 14 ~~~~l~V~-----nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVS-----NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEE-----SCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44566664 122369999999999999999999998653 8999999999999999997 4666788999999
Q ss_pred ecCCCcccc
Q psy3926 484 YLNPDVERE 492 (512)
Q Consensus 484 wa~~~~~r~ 492 (512)
|+.+++.+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998876654
No 84
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=4e-09 Score=88.71 Aligned_cols=79 Identities=20% Similarity=0.423 Sum_probs=64.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. + .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 14 ~~~~l~V~---n--lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 14 DNATIRVT---N--LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp SSEEEEEE---S--CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCEEEEe---C--CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 44566664 1 22369999999999999999999998653 6899999999999999997 45667789999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.+++.+.
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99998876654
No 85
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2e-09 Score=88.21 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|.+|.|..+.+|+|||+|.+.++|.+|+.......+.+|.|.|+.++..+.
T Consensus 15 ~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 15 GDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp SSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCCC
T ss_pred CCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCCC
Confidence 36999999999999999999999988899999999999999987665555577899999998765543
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.84 E-value=4.1e-09 Score=89.72 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=64.6
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|. +.+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 24 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 24 VEGWILFVT-----SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp TTBEEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 344566664 122369999999999999999999998653 7999999999999999997 4666778999
Q ss_pred EEEecCCCccc
Q psy3926 481 TLNYLNPDVER 491 (512)
Q Consensus 481 ~V~wa~~~~~r 491 (512)
.|.|+.+++++
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 99999876654
No 87
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.84 E-value=6.3e-09 Score=89.41 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=59.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC--CCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~--~~~~pL~V~w 484 (512)
..++|-|+ +.+..+|+++|+++|++||.|.+|.|.+ .||+|||+|++.++|.+||.. +.. +.+.+|.|.|
T Consensus 20 ps~~l~V~-----NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIR-----GLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEe-----CCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 44556554 2224699999999999999999999875 479999999999999999974 343 5689999999
Q ss_pred cCCC
Q psy3926 485 LNPD 488 (512)
Q Consensus 485 a~~~ 488 (512)
+..+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9764
No 88
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.84 E-value=7.7e-09 Score=96.37 Aligned_cols=64 Identities=30% Similarity=0.432 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHH--hhcCCCC--CceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKL--YELGLPN--CPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~--~~~~~~~--~pL~V~wa~~~ 488 (512)
..+|+++|+++|++||.|..|.|..++ +|+|||+|.+.++|..|+. ++..+.+ .+|+|.|++++
T Consensus 56 ~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 56 YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp SCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 469999999999999999999987554 7899999999999999998 4666654 89999999875
No 89
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=7.9e-09 Score=86.61 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=64.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|.= .+..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 11 ~~~~l~v~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 11 DEGKLFVGG-----LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCSEEEEES-----CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 445666642 2236999999999999999999999864 37999999999999999996 46778889999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.+++...
T Consensus 86 v~~a~~~~~~~ 96 (102)
T 1x5s_A 86 VDQAGKSSDNR 96 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998766543
No 90
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.84 E-value=6.8e-09 Score=83.51 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++
T Consensus 11 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 11 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 468999999999999999999987542 7999999999999999997 4666778999999998764
No 91
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=4.8e-09 Score=86.84 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHhhccCCeeEE-EEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINIL-VISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V-~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|.+| .|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++.+..
T Consensus 15 ~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 15 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGS 91 (96)
T ss_dssp TTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCCC
Confidence 369999999999999999999 88765 37999999999999999998 45667789999999988776543
No 92
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=1e-08 Score=87.00 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=65.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--------hcCC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--------ELGL 475 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--------~~~~ 475 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+.. +..+
T Consensus 14 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 14 EGKTVFIR-----NLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCEEEE-----SCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCEEEEE-----CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 44566554 12236999999999999999999999854 379999999999999999973 5667
Q ss_pred CCCceEEEecCCCccccc
Q psy3926 476 PNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 476 ~~~pL~V~wa~~~~~r~~ 493 (512)
.+.+|.|.|+.++..+..
T Consensus 89 ~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SSCEEEEECCCCCCCCCC
T ss_pred cCEEEEEEECCCCccCCC
Confidence 889999999988766553
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=3.3e-09 Score=89.14 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++..+..
T Consensus 18 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 93 (104)
T 1p1t_A 18 YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 93 (104)
T ss_dssp TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHH
T ss_pred CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchhh
Confidence 369999999999999999999988654 7999999999999999997 46778889999999998776654
No 94
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.1e-08 Score=86.29 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|.= .+..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 13 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 13 NQDATVYVGG-----LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CTTTEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3556777752 22369999999999999999999998653 6999999999999999997 4677888999
Q ss_pred EEEecCCCcccc
Q psy3926 481 TLNYLNPDVERE 492 (512)
Q Consensus 481 ~V~wa~~~~~r~ 492 (512)
.|.|+.+++.+.
T Consensus 88 ~v~~a~~~~~~~ 99 (105)
T 1x5u_A 88 RVNKASAHNKNL 99 (105)
T ss_dssp EEEETTTTSCCC
T ss_pred EEEECCCCCcCC
Confidence 999998876654
No 95
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=6.5e-09 Score=86.84 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=58.0
Q ss_pred CCCCHHHHH----HHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLT----KIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~----~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
..+|+++|+ ++|+.||.|.+|.|..++ +|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.+++.
T Consensus 19 ~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 19 YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 369999999 999999999999998654 8999999999999999997 46667889999999977543
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.83 E-value=4.7e-09 Score=86.57 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHhhccC--CeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYG--KINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG--~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.|| .|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.++.++++..
T Consensus 11 ~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~~ 87 (90)
T 3p5t_L 11 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHHH 87 (90)
T ss_dssp TTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-------
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcccc
Confidence 4689999999999999 99999887653 7999999999999999996 4778889999999998876543
No 97
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=7.7e-09 Score=86.95 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=64.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. +.+..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 12 ~~~~l~V~-----nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 12 GMITLKVD-----NLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CCCEEEEE-----SCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCeEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 44566664 222369999999999999999999998643 7999999999999999997 46778889999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.+..++.
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99998765554
No 98
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=7.6e-09 Score=87.02 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=64.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~ 483 (512)
..++|-|.= .+..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+.....+.+.+|.|.
T Consensus 14 ~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLG-----LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEES-----CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCEEEEEc-----CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEE
Confidence 445666642 22369999999999999999999987653 68999999999999999987666778999999
Q ss_pred ecCCCccc
Q psy3926 484 YLNPDVER 491 (512)
Q Consensus 484 wa~~~~~r 491 (512)
|+.+++..
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876554
No 99
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=9.9e-09 Score=86.29 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=65.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhc-cCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh--hcC-CCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSK-YGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELG-LPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~-fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~--~~~-~~~~pL 480 (512)
..++|-|.= .+..+|+++|+++|+. ||.|.+|.|..+ .+|+|||+|.+.++|.+|+.. +.. +.+.+|
T Consensus 8 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGD-----LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCCEEEEC-----CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCcEEEEeC-----CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 445666541 2236999999999999 999999999865 379999999999999999973 555 788999
Q ss_pred EEEecCCCccccc
Q psy3926 481 TLNYLNPDVEREE 493 (512)
Q Consensus 481 ~V~wa~~~~~r~~ 493 (512)
.|.|+.++..+..
T Consensus 83 ~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 83 RLSVAIPKASRVK 95 (104)
T ss_dssp CCCBCCCCCSCCC
T ss_pred EEEEccCCCcCCC
Confidence 9999988766654
No 100
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.82 E-value=8.6e-09 Score=92.72 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|.+|.|..+.+|+|||+|.+.++|..|+. ++..+.+.+|.|.|+.+++
T Consensus 83 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 83 NNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 3689999999999999999999998889999999999999999997 4677888999999998764
No 101
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=5.7e-09 Score=87.50 Aligned_cols=79 Identities=25% Similarity=0.254 Sum_probs=64.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|.= .+..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 11 ~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 11 TKRVLYVGG-----LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCSCEEEES-----CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 445666642 2236999999999999999999999764 48999999999999999996 46677889999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998876554
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.81 E-value=1.2e-08 Score=90.57 Aligned_cols=78 Identities=27% Similarity=0.324 Sum_probs=64.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. +.+..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+||. ++..+.+.+|.
T Consensus 45 ~~~~l~V~-----nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 45 PNCCLGVF-----GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CSSCBCEE-----TCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566653 22246999999999999999999999754 37999999999999999997 46778889999
Q ss_pred EEecCCCccc
Q psy3926 482 LNYLNPDVER 491 (512)
Q Consensus 482 V~wa~~~~~r 491 (512)
|.|+.++.++
T Consensus 120 V~~a~~~~p~ 129 (129)
T 2kxn_B 120 VDFSITKRPH 129 (129)
T ss_dssp ESCCSSSSCC
T ss_pred EEEecCCCCC
Confidence 9999887654
No 103
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.81 E-value=7.1e-09 Score=89.04 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=64.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 24 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 24 EGANLFIY-----HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp TTCCEEEE-----SCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34566653 122369999999999999999999988654 6899999999999999996 46667789999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.++..+.
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99998876654
No 104
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1e-08 Score=87.17 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=63.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL--YELGLPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~w 484 (512)
..++|-|.=- +..+|+++|+++|+.||.|..|.|..+. +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus 21 ~~~~l~V~nL-----p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 21 NDCRIYVGNL-----PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CSSEEEEESC-----CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4456766521 2369999999999999999999987643 7999999999999999996 35667789999999
Q ss_pred cCCCcccc
Q psy3926 485 LNPDVERE 492 (512)
Q Consensus 485 a~~~~~r~ 492 (512)
+.++..+.
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98765443
No 105
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.81 E-value=4.7e-09 Score=90.71 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|++||.|.+|.|..++ +|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.....+.
T Consensus 16 ~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~ 90 (110)
T 3s8s_A 16 DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRM 90 (110)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHH
Confidence 369999999999999999999987543 7999999999999999997 4677788999999998765554
No 106
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.80 E-value=2.5e-08 Score=85.45 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=64.4
Q ss_pred CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCc
Q psy3926 407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCP 479 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~p 479 (512)
....++|-|.= .+..+|++.|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+
T Consensus 23 ~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 23 SAGPMRLYVGS-----LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CSSCEEEEEEC-----CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34556677652 22369999999999999999999988643 6999999999999999997 577788899
Q ss_pred eEEEecCCCc
Q psy3926 480 LTLNYLNPDV 489 (512)
Q Consensus 480 L~V~wa~~~~ 489 (512)
|.|.|+.++.
T Consensus 98 l~V~~a~~k~ 107 (108)
T 2jrs_A 98 MKVGHVTERT 107 (108)
T ss_dssp CEEECSCSSC
T ss_pred EEEEEcccCC
Confidence 9999998764
No 107
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.80 E-value=1.3e-08 Score=85.91 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=62.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. +.+..+|+++|+++|+.||.|..|.|. +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 10 ~~~~l~V~-----nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVR-----NLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEE-----CCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 34556654 122369999999999999999999986 6799999999999999997 4666778999999999
Q ss_pred CCccccc
Q psy3926 487 PDVEREE 493 (512)
Q Consensus 487 ~~~~r~~ 493 (512)
++..+..
T Consensus 82 ~~~~~~~ 88 (103)
T 2dgu_A 82 PPDQKRK 88 (103)
T ss_dssp CCCCCCC
T ss_pred CCcccch
Confidence 8766653
No 108
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.80 E-value=8.1e-09 Score=85.89 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++...
T Consensus 12 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 86 (96)
T 2x1f_A 12 YDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISG 86 (96)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGGG
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCCC
Confidence 369999999999999999999998653 7999999999999999996 4666778999999998876554
No 109
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=1e-08 Score=85.79 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=63.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. +.+..+|+++|+++|+.||.|..|.|..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 14 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 14 QRSRLFVG-----NLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CTTEEEEE-----SCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 44566663 12236999999999999999999998865 7999999999999999996 4667788999999998
Q ss_pred CCccc
Q psy3926 487 PDVER 491 (512)
Q Consensus 487 ~~~~r 491 (512)
+++..
T Consensus 88 ~~~~~ 92 (99)
T 2cpj_A 88 HSASL 92 (99)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 110
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.79 E-value=9.7e-09 Score=90.19 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=62.7
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. +. .+|+++|+++|+.||.|.+|.|. ..+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 38 ~~~~lfVg---nl----~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVY---GE----DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEE---CS----SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEc---CC----CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 44567665 11 49999999999999999999986 568999999999999999996 4677788999999998
Q ss_pred CCcccc
Q psy3926 487 PDVERE 492 (512)
Q Consensus 487 ~~~~r~ 492 (512)
+++...
T Consensus 110 ~~~~~~ 115 (121)
T 2bz2_A 110 KQPMLD 115 (121)
T ss_dssp SSCC--
T ss_pred CCCCCC
Confidence 776543
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.79 E-value=6.2e-09 Score=87.70 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..+||+.|+++|.+||+|.++.|.. .+|+|||+|.+.++|..|++ +++.+.+.+|.|++|.
T Consensus 17 ~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 17 AQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4699999999999999999999865 58999999999999999997 4788899999999993
No 112
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.8e-08 Score=86.13 Aligned_cols=80 Identities=18% Similarity=0.129 Sum_probs=64.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V 482 (512)
..++|-|. +....+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 14 ~~~~l~V~-----nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 14 LGSTVFVA-----NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCSCEEEE-----SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 45567664 122369999999999999999999988753 6899999999999999997 466677899999
Q ss_pred EecCCCccccc
Q psy3926 483 NYLNPDVEREE 493 (512)
Q Consensus 483 ~wa~~~~~r~~ 493 (512)
.|+....++..
T Consensus 89 ~~a~~~~~~~~ 99 (114)
T 2do0_A 89 KMDERALPKGD 99 (114)
T ss_dssp EECSCCCCCSC
T ss_pred EEcccCCCCCC
Confidence 99987655543
No 113
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.79 E-value=1.3e-08 Score=85.77 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=63.7
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCC---CC
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGL---PN 477 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~---~~ 477 (512)
...++|-|.= .+..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+.. +..+ .+
T Consensus 11 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 11 HDAIKLFIGQ-----IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp TTCEEEEEES-----CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3455666641 2236999999999999999999999864 379999999999999999973 4444 67
Q ss_pred CceEEEecCCCcccc
Q psy3926 478 CPLTLNYLNPDVERE 492 (512)
Q Consensus 478 ~pL~V~wa~~~~~r~ 492 (512)
.+|.|.|+.++..+.
T Consensus 86 ~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 86 RPIQVKPADSESRGG 100 (106)
T ss_dssp SCCEEEECCCCSCCC
T ss_pred ceEEEEECCcccccC
Confidence 899999998876543
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=9e-09 Score=83.29 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH---hhcCCCCCceEEEe
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL---YELGLPNCPLTLNY 484 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~---~~~~~~~~pL~V~w 484 (512)
...++|-|. +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus 10 ~~~~~l~V~-----~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVG-----GLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEE-----CCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEc-----CCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345566664 12236999999999999999999999874 7999999999999999997 45667788999999
Q ss_pred cC
Q psy3926 485 LN 486 (512)
Q Consensus 485 a~ 486 (512)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 115
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=9.9e-09 Score=85.39 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++..+.
T Consensus 15 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 15 FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 36999999999999999999998753 25899999999999999998 4666778999999998765544
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.78 E-value=1.2e-08 Score=88.79 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=65.3
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|.=- +..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 20 ~~~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 20 VEGWILFVTGV-----HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp SSSEEEEEESC-----CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCEEEEeCC-----CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34556666522 2369999999999999999999997654 8999999999999999996 5677888999
Q ss_pred EEEecCCCcccc
Q psy3926 481 TLNYLNPDVERE 492 (512)
Q Consensus 481 ~V~wa~~~~~r~ 492 (512)
.|.|+.+++...
T Consensus 95 ~v~~a~~~~~~~ 106 (126)
T 3ex7_B 95 SVDWCFVRGPPK 106 (126)
T ss_dssp EEEESEESSSCC
T ss_pred EEEEecCCCCCC
Confidence 999998765544
No 117
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.78 E-value=8.3e-09 Score=83.35 Aligned_cols=62 Identities=27% Similarity=0.323 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|++
T Consensus 17 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 17 EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 36999999999999999999998754 38999999999999999996 4667778999999985
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.78 E-value=6.9e-09 Score=89.09 Aligned_cols=75 Identities=31% Similarity=0.392 Sum_probs=61.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. +....+|+++|+++|+.||.|..|.|. +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 30 ~~~~l~V~-----nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 30 SNTRLFVR-----PFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp SCSEEEEC-----SSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCEEEEE-----CCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 44566654 222469999999999999999999987 8999999999999999997 4666788999999998
Q ss_pred CCccc
Q psy3926 487 PDVER 491 (512)
Q Consensus 487 ~~~~r 491 (512)
+++.+
T Consensus 102 ~~~~r 106 (108)
T 2jvo_A 102 LPAKR 106 (108)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 87655
No 119
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=1.4e-08 Score=90.42 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=63.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHH----HHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~----~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
..++|-|. + .+..+++++|+ ++|++||.|.+|.|.. ..+|+|||+|.+.++|..|+. ++..+.+.+|
T Consensus 28 p~~~LfV~---n--L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 28 PSQVVLIT---N--INPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCSEEEEE---S--CCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCEEEEe---C--CCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 44566663 1 12358888765 7999999999998865 458999999999999999997 4777888999
Q ss_pred EEEecCCCccccc
Q psy3926 481 TLNYLNPDVEREE 493 (512)
Q Consensus 481 ~V~wa~~~~~r~~ 493 (512)
.|.|+.++.....
T Consensus 103 ~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 103 VITFSETPQSQVA 115 (127)
T ss_dssp EEEECCCCCHHHH
T ss_pred EEEEccCcchhcc
Confidence 9999998766553
No 120
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.78 E-value=1e-08 Score=81.18 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEec
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYL 485 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa 485 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|+||
T Consensus 9 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp SSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 468999999999999999999987653 7999999999999999996 356677899999986
No 121
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=86.53 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCC--eeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hc---
Q psy3926 406 LNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK--INILVISPKK-----RGSALLEFEHADSARRAKLY--EL--- 473 (512)
Q Consensus 406 ~~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~--I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~--- 473 (512)
....+++|-|+= .+..+|+++|+++|++||. |.+|.|..++ +|+|||+|.+.++|.+|++. +.
T Consensus 5 ~~~~m~tlfV~n-----L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 5 HHHHMDTIILRN-----IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp SSCCCCEEEEES-----CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred cCCccCEEEEeC-----CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 345677887752 2246999999999999995 6788887643 79999999999999999974 22
Q ss_pred -CCCCCceEEEecCC
Q psy3926 474 -GLPNCPLTLNYLNP 487 (512)
Q Consensus 474 -~~~~~pL~V~wa~~ 487 (512)
.+.+.+|.|+||+.
T Consensus 80 ~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 80 LKIDGKTIGVDFAKS 94 (95)
T ss_dssp EEETTEEEEEEECCC
T ss_pred ceECCEEEEEEEccC
Confidence 24578999999974
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.77 E-value=1.1e-08 Score=83.44 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++.
T Consensus 16 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 16 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp TTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTTS
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCCC
Confidence 368999999999999999999988653 8999999999999999994 3566778899999997643
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.77 E-value=1e-08 Score=89.67 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=55.9
Q ss_pred CC-CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEEEecCCCcc
Q psy3926 425 DV-YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~-~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V~wa~~~~~ 490 (512)
.. +|+++|+++|+.||.|.+|.|.. .+|+|||+|++.++|..||.. + ..+.+.+|.|.|+.....
T Consensus 35 ~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 35 HSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred CccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 35 89999999999999999999875 479999999999999999973 3 347889999999976543
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-08 Score=83.51 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=62.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|.- .+..+|+++|+++|+.||.|.+|.|. +++|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 8 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGN-----VSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEES-----CCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 445666542 12369999999999999999999997 5699999999999999997 4666788999999998
Q ss_pred CCcccc
Q psy3926 487 PDVERE 492 (512)
Q Consensus 487 ~~~~r~ 492 (512)
++..+.
T Consensus 80 ~~~~~~ 85 (90)
T 2dnp_A 80 KGQKKS 85 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.77 E-value=9.5e-09 Score=89.27 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=62.7
Q ss_pred ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEe
Q psy3926 411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNY 484 (512)
Q Consensus 411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~w 484 (512)
++|-|.--. ..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus 37 ~~l~V~nlp-----~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 37 RSVYVGNVD-----YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp TEEEEEEEC-----TTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CEEEEeCCC-----CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 467776432 258999999999999999999987643 8999999999999999995 35567788999999
Q ss_pred cCCCcccc
Q psy3926 485 LNPDVERE 492 (512)
Q Consensus 485 a~~~~~r~ 492 (512)
+.+..+..
T Consensus 112 a~~~~~~~ 119 (124)
T 2jwn_A 112 KRTNMPGI 119 (124)
T ss_dssp SSCCCSSC
T ss_pred CCCCCCCC
Confidence 98765543
No 126
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.4e-08 Score=84.77 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=55.7
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
.+|+++|+++|+.||.|.+|.|. +|+|||+|.+.++|..|+. ++..+.+.+|.|.|+.+++..
T Consensus 22 ~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 22 NVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp CCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 58999999999999999999985 7999999999999999997 466677899999999775544
No 127
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=2e-08 Score=85.78 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~ 487 (512)
..+|+++|+++|+.||+|.+|.|..+ .+|+|||+|.+.++|.+|+.. +..+.+.+|.|.|+.+
T Consensus 21 ~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 21 TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp TTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 36999999999999999999999864 379999999999999999974 5667789999999865
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.2e-08 Score=84.83 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=62.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC-eeEEEEc-c-----CCCceEEEEEcCHHHHHHHHHh----hcCCCC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK-INILVIS-P-----KKRGSALLEFEHADSARRAKLY----ELGLPN 477 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~-I~~V~i~-~-----~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~ 477 (512)
..++|-|.= .+..+|+++|+++|+.||. |.+|.|. . ..+|+|||+|.+.++|..|+.. +..+.+
T Consensus 7 ~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGG-----IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEEC-----CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeC-----CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 445565541 2236999999999999998 9999987 3 3489999999999999999973 356778
Q ss_pred CceEEEecCCCccc
Q psy3926 478 CPLTLNYLNPDVER 491 (512)
Q Consensus 478 ~pL~V~wa~~~~~r 491 (512)
.+|.|.|+.++++.
T Consensus 82 ~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 HQIAVDWAEPEIDV 95 (109)
T ss_dssp BCCEEEESCSSCST
T ss_pred CeEEEEEcCCCCCc
Confidence 99999999976654
No 129
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=1.6e-08 Score=87.12 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=55.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
.+|+++|+++|+.||.|..|.|.. .+|+|||+|.+.++|..||. ++..+.+.+|.|.|+...
T Consensus 21 ~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 21 GTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 689999999999999999999875 57999999999999999997 467778899999999754
No 130
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.75 E-value=1.5e-08 Score=86.95 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=62.6
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V 482 (512)
..++|-|.= .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus 24 ~~~~lfV~n-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 24 SGCKMFIGG-----LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp --CCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 445676652 22369999999999999999999998653 79999999999999999974 45567789999
Q ss_pred EecCCCccc
Q psy3926 483 NYLNPDVER 491 (512)
Q Consensus 483 ~wa~~~~~r 491 (512)
.|+.+++.+
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999877654
No 131
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.75 E-value=1.4e-08 Score=89.87 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=65.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. +....+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 41 ~~~~l~V~-----nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 41 VLRNLMVN-----YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTSEEEEE-----SCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44667664 222469999999999999999999987643 7999999999999999997 46778889999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.++..+.
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99999876664
No 132
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.4e-08 Score=83.29 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=60.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. +.+..+|+++|+++|+.||.|...++....+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 18 ~~~~l~V~-----nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVG-----NLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEE-----CCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEe-----CCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44566653 1223699999999999999997333344568999999999999999996 4677888999999998
Q ss_pred CCcc
Q psy3926 487 PDVE 490 (512)
Q Consensus 487 ~~~~ 490 (512)
++++
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 133
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.75 E-value=5.2e-09 Score=105.65 Aligned_cols=66 Identities=38% Similarity=0.549 Sum_probs=56.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKSARAAYDS 316 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~---~~a~~~F~~I~~AYevLsDp~~R~~YD~ 316 (512)
..++|.+||+...++..+|+++|+++++++|||+.+++ ..+...|..|.+||++|+||.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 45899999999999999999999999999999999754 2478899999999999999999999996
No 134
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.74 E-value=2.2e-08 Score=82.17 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=62.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~ 483 (512)
..++|-|.= .+..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.
T Consensus 7 ~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRN-----LPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECS-----CCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCcEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445665531 2236999999999999999999998763 37999999999999999997 4677888999999
Q ss_pred ecCCCcc
Q psy3926 484 YLNPDVE 490 (512)
Q Consensus 484 wa~~~~~ 490 (512)
|+.++..
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987654
No 135
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.1e-08 Score=82.67 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=62.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. . .+..+|+++|+++|+.||.|..|.|. +++|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 9 ~~~~l~V~-n----Lp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVG-N----ISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEE-S----CCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEe-C----CCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 44556553 2 22369999999999999999999996 5599999999999999996 4667788999999998
Q ss_pred CCcccc
Q psy3926 487 PDVERE 492 (512)
Q Consensus 487 ~~~~r~ 492 (512)
+++.+.
T Consensus 81 ~~~~~~ 86 (92)
T 2dgt_A 81 SRLRTA 86 (92)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 766544
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.74 E-value=1.1e-08 Score=89.11 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHhhccC-CeeEEEEc-cCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYG-KINILVIS-PKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG-~I~~V~i~-~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.|| .|..|.|. .+.+|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.++|+.
T Consensus 38 ~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~~ 108 (111)
T 2jvr_A 38 EGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPPI 108 (111)
T ss_dssp CCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC----
T ss_pred CCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 4689999999999999 89999886 4568999999999999999996 467778899999999876654
No 137
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.74 E-value=2.2e-08 Score=89.01 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCce-EEEEEcCHHHHHHHHHh--hcCCCC--CceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGS-ALLEFEHADSARRAKLY--ELGLPN--CPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~-A~V~F~s~~~A~~Ai~~--~~~~~~--~pL~V~wa~~~~ 489 (512)
-.+|++.|+++|++||.|.+|+|..+ .|+ |||+|.+.++|..|+.. +..+.+ .+|.|.||+++.
T Consensus 35 ~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 35 YPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 36999999999999999999998764 595 99999999999999974 555555 689999998653
No 138
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=9.8e-09 Score=87.95 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=63.5
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTL 482 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V 482 (512)
...++|-|. +....+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 27 ~~~~~l~V~-----nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 27 SQPKRLHVS-----NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp TCCCEEEEE-----SCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEE-----CCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345667664 222469999999999999999999998653 7999999999999999997 466678899999
Q ss_pred EecCCCc
Q psy3926 483 NYLNPDV 489 (512)
Q Consensus 483 ~wa~~~~ 489 (512)
.|+.+++
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998764
No 139
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.73 E-value=2e-08 Score=95.81 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
.+|++.|+++|+.||.|.+|.|..+++|+|||+|.+.++|..||. ++..+.+.+|.|.|+..+
T Consensus 16 ~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 16 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 699999999999999999999998889999999999999999997 477788899999999753
No 140
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.8e-08 Score=86.65 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+||.. +..+.+.+|.|.|+.++..+.
T Consensus 37 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 37 FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccCC
Confidence 469999999999999999999988653 79999999999999999975 455677899999998876654
No 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.1e-08 Score=85.71 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=60.7
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|.- ....+|+++|+++|+.||.|.+|.|.. .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 26 ~~~~l~V~n-----lp~~~~~~~l~~~f~~~G~i~~~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGN-----IPHFATEADLIPLFQNFGFILDFKHYP-EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEES-----CCTTCCHHHHHHHHHTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcC-----CCcccCHHHHHHHHHhCCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 445666642 223699999999999999999999874 58999999999999999996 4666778999999997
Q ss_pred CC
Q psy3926 487 PD 488 (512)
Q Consensus 487 ~~ 488 (512)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 142
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=2.1e-08 Score=82.64 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|.= .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 14 ~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 14 PSKSTVYVSN-----LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCTTSEEEES-----CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3456777752 12369999999999999999999998643 6899999999999999996 4666778999
Q ss_pred EEEecC
Q psy3926 481 TLNYLN 486 (512)
Q Consensus 481 ~V~wa~ 486 (512)
.|.||+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999984
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.72 E-value=2e-08 Score=84.31 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=61.3
Q ss_pred CCCcceeEEEeecCCCCCC-CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEE
Q psy3926 407 NPENYRLRIRWKSSSTDTD-VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLN 483 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~~-~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~ 483 (512)
....++|-|.= ... .+|+++|+++|+.||.|.+|.|. +|+|||+|.+.++|.+|+.. +..+.+.+|.|.
T Consensus 19 ~~~~~~l~V~n-----Lp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGN-----LPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEES-----CCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeC-----CCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556777652 223 58999999999999999999984 89999999999999999973 555678899999
Q ss_pred ecCCCc
Q psy3926 484 YLNPDV 489 (512)
Q Consensus 484 wa~~~~ 489 (512)
|+.+++
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 997654
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=1.2e-08 Score=87.58 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=57.4
Q ss_pred CCCHHHHH---HHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 426 VYTRESLT---KIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 426 ~~te~~L~---~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
.+|+++|+ ++|++||.|.+|.|..++ +|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.+++.
T Consensus 26 ~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 26 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 58999999 999999999999998643 3899999999999999997 46667889999999988764
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.71 E-value=1.9e-08 Score=83.04 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=61.8
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
...++|-|.= .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 14 ~~~~~l~v~n-----lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 14 EADRTVFVGN-----LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TGGGEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3456677652 22369999999999999999999998754 7999999999999999997 46667789999
Q ss_pred EEecCC
Q psy3926 482 LNYLNP 487 (512)
Q Consensus 482 V~wa~~ 487 (512)
|.|+..
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999863
No 146
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.71 E-value=2.7e-08 Score=89.83 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|..|+. ++..+.+.+|.|.|+.++.++.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 46999999999999999999999764 37999999999999999997 4677888999999998765543
No 147
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.4e-08 Score=82.32 Aligned_cols=75 Identities=28% Similarity=0.317 Sum_probs=61.4
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|. +.+..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 13 ~~~~~l~v~-----nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 13 DPNCCLGVF-----GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CGGGCEEEE-----SCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEE-----CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345667764 122369999999999999999999987542 6899999999999999997 4666778999
Q ss_pred EEEecCC
Q psy3926 481 TLNYLNP 487 (512)
Q Consensus 481 ~V~wa~~ 487 (512)
.|.|+..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 148
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=1.3e-08 Score=85.85 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|.|+.++.++.
T Consensus 26 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 26 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCCT
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCCC
Confidence 369999999999999999999998753 69999999999999999974 555678899999998776554
No 149
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=83.27 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHhhccCCee-EEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCc----eEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKIN-ILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCP----LTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~-~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~p----L~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|. +|.|+.++ +|+|||+|.+.++|.+|+. ++..+.+.+ |.|.|+.+..
T Consensus 19 ~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 19 PYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp TTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred CCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 4699999999999999999 99988653 6999999999999999997 355566777 9999998653
No 150
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.70 E-value=1.6e-08 Score=86.27 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=56.4
Q ss_pred CC-CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DV-YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~-~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
.. +|+++|+++|+.||.|.+|.| .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++.+..
T Consensus 37 ~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 104 (110)
T 1wf1_A 37 TALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDR 104 (110)
T ss_dssp CSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSCC
T ss_pred cccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCCC
Confidence 35 899999999999999999999 57999999999999999996 4566778999999998654443
No 151
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.70 E-value=2.5e-08 Score=90.26 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=64.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|.=- +..+|+++|+++|+.||.|..|.|+.++ +|+|||+|.+.++|.+||. ++..+.+.+|.
T Consensus 38 ~~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 38 KSCTLYVGNL-----SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TCCEEEEESC-----CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4567777522 2369999999999999999999997643 6999999999999999997 46667789999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.++.++.
T Consensus 113 V~~a~~~~~~~ 123 (156)
T 1h2v_Z 113 TDWDAGFKEGR 123 (156)
T ss_dssp EEEESCCCTTC
T ss_pred EEECCCCCCcC
Confidence 99998765544
No 152
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.70 E-value=2.7e-08 Score=88.81 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=64.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|.== +..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 46 ~~~~l~V~nL-----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 46 GMTSLKVDNL-----TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GCCCEEEECC-----CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456777522 236899999999999999999999754 37999999999999999997 46778889999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.+..++.
T Consensus 121 V~~a~~~~~~~ 131 (135)
T 2lea_A 121 VQMARYGRPPD 131 (135)
T ss_dssp EEECCCCCCCT
T ss_pred EEECCCCCCCc
Confidence 99998765544
No 153
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=6.7e-08 Score=83.01 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=61.2
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLT 481 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~ 481 (512)
...++|-|. +.+..+|+++|+++|+.||.|.+|.|+.++ +|+|||+|.+.++|.+|+.. +..+.+.+|.
T Consensus 15 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 15 TTFTKIFVG-----GLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CSSSEEEEE-----CCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCCCEEEEe-----CCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 355667664 122369999999999999999999998753 79999999999999999974 2246678999
Q ss_pred EEecCCC
Q psy3926 482 LNYLNPD 488 (512)
Q Consensus 482 V~wa~~~ 488 (512)
|.|+.+.
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999764
No 154
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.2e-08 Score=87.93 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCC-----CCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGL-----PNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~-----~~~pL 480 (512)
..+++|-|+ +.+....+|+++|+++|++||.|.+|+|..+ +|+|||+|++.++|.+|+.. +..+ .+.||
T Consensus 23 ~pt~~L~V~---Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVA---NGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEE---TCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEE---CCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 345667776 2112235899999999999999999998764 79999999999999999974 3322 35789
Q ss_pred EEEecCCCcccc
Q psy3926 481 TLNYLNPDVERE 492 (512)
Q Consensus 481 ~V~wa~~~~~r~ 492 (512)
.|.|+..-|...
T Consensus 99 ~v~~a~~~p~~~ 110 (114)
T 2cq2_A 99 YLNFVEKVQWSG 110 (114)
T ss_dssp EEEEESCCCCSS
T ss_pred EEEecccCcccC
Confidence 999998766544
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.3e-08 Score=84.04 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=61.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC-eeEEEEccCCCceEEEEEcCHHHHHHHHHh--h-cCCCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK-INILVISPKKRGSALLEFEHADSARRAKLY--E-LGLPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~-I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~-~~~~~~pL~V~w 484 (512)
..++|-|. +.+..+|+++|+++|+.||. |..+.+. .+|+|||+|.+.++|.+|+.. + ..+.+.+|.|.|
T Consensus 7 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIG-----NLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEE-----CCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEe-----CCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 44556553 22246999999999999999 6666664 479999999999999999973 5 567889999999
Q ss_pred cCCCcccc
Q psy3926 485 LNPDVERE 492 (512)
Q Consensus 485 a~~~~~r~ 492 (512)
+.+++.+.
T Consensus 80 a~~~~~~~ 87 (93)
T 2cqh_A 80 SVSKKLRS 87 (93)
T ss_dssp CCCCCCCC
T ss_pred ccCccccC
Confidence 99876664
No 156
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.69 E-value=4.2e-08 Score=81.93 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=59.9
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeE--------EEEccCC-----CceEEEEEcCHHHHHHHHH--hhc
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINI--------LVISPKK-----RGSALLEFEHADSARRAKL--YEL 473 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~--------V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~ 473 (512)
...+|-|. +....+|+++|+++|+.||.|.. |.|..++ +|+|||+|.+.++|.+|+. ++.
T Consensus 12 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 12 DNNTIFVQ-----GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSEEEEE-----CCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 44556553 12246999999999999999999 8887653 7999999999999999997 577
Q ss_pred CCCCCceEEEecC
Q psy3926 474 GLPNCPLTLNYLN 486 (512)
Q Consensus 474 ~~~~~pL~V~wa~ 486 (512)
.+.+.+|.|.||.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 7888999999984
No 157
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=3.3e-08 Score=83.30 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=62.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKL-YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~ 481 (512)
..++|-|.- .+..+|+++|+++|+.|| |.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 14 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 14 PPYTAFLGN-----LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp SCEEEEEES-----CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCEEEEeC-----CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 445666652 223699999999999999 9999988542 7899999999999999994 24556788999
Q ss_pred EEecCCCcccc
Q psy3926 482 LNYLNPDVERE 492 (512)
Q Consensus 482 V~wa~~~~~r~ 492 (512)
|.|+.+++.+.
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99998876554
No 158
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.68 E-value=3e-08 Score=84.98 Aligned_cols=66 Identities=27% Similarity=0.370 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC--CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK--KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~--kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++..
T Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 18 YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 36999999999999999999998754 37999999999999999997 46777889999999986443
No 159
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.68 E-value=1.4e-08 Score=83.07 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=53.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
.+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.+ |..|+. ++..+.+.+|.|.||.+++..
T Consensus 12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 6899999999999999999999854 3799999999999 999997 467788899999999875443
No 160
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.68 E-value=2.6e-08 Score=81.04 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=58.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V 482 (512)
..++|-|. + .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus 10 ~~~~l~V~-n----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 10 DAGKMFVG-G----LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp CTTEEEEE-C----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCEEEEe-C----CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 44566663 1 22368999999999999999999987643 79999999999999999974 44467789999
Q ss_pred Eec
Q psy3926 483 NYL 485 (512)
Q Consensus 483 ~wa 485 (512)
+||
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 161
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=4.5e-08 Score=83.70 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCC--------CCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGL--------PNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~--------~~~pL~V~wa~~~ 488 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+.. +..+ .+.||.|.|+.++
T Consensus 35 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 35 LSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 369999999999999999999988653 68999999999999999973 4444 5689999999854
No 162
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.7e-08 Score=84.99 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=65.1
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCee--------EEEEccCC-----CceEEEEEcCHHHHHHHHH--hh
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKIN--------ILVISPKK-----RGSALLEFEHADSARRAKL--YE 472 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~--------~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~ 472 (512)
...++|-|.= .+..+|+++|+++|+.||.|. .|.|..++ +|+|||+|.+.++|.+|+. ++
T Consensus 13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 13 SDNSAIYVQG-----LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCEEEEEC-----CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEcC-----CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 3456676652 223699999999999999998 58887653 7999999999999999997 56
Q ss_pred cCCCCCceEEEecCCCcccc
Q psy3926 473 LGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 473 ~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+.+.+|.|.|+.+++++.
T Consensus 88 ~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp CEETTEECEEECSSCCCCST
T ss_pred CccCCCEEEEEECCCCCCCC
Confidence 67788999999999877654
No 163
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.67 E-value=2.7e-08 Score=83.87 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCC-CceEEEecCCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPN-CPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~-~pL~V~wa~~~ 488 (512)
.++++.|+++|++||.|.+|.|+.++ +|+|||+|.+.++|.+||. ++..+.+ .+|.|.|+.+.
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 57899999999999999999998543 7999999999999999996 4677777 99999999653
No 164
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.7e-08 Score=78.85 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL 485 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa 485 (512)
..+|+++|+++|++||.|.+|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|.||
T Consensus 10 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 10 WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp SSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 468999999999999999999987653 79999999999999999973 46777899999997
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.67 E-value=1.8e-08 Score=83.57 Aligned_cols=79 Identities=25% Similarity=0.388 Sum_probs=64.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHH----HHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~----~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
..++|-|.= .+..+|+++|+ ++|+.||.|.+|.|.. ..+|+|||+|.+.++|..|+. ++..+.+.+|
T Consensus 7 ~~~~l~V~n-----Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 7 PNHTIYINN-----LNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CCSEEEEES-----CCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 445666652 22369999999 9999999999999874 347999999999999999997 4666778999
Q ss_pred EEEecCCCcccc
Q psy3926 481 TLNYLNPDVERE 492 (512)
Q Consensus 481 ~V~wa~~~~~r~ 492 (512)
.|.|+.+++...
T Consensus 82 ~v~~a~~~~~~~ 93 (97)
T 1nu4_A 82 RIQYAKTDSDII 93 (97)
T ss_dssp EEEECSSCCTHH
T ss_pred EEEEccCCCccc
Confidence 999999876653
No 166
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.67 E-value=2.9e-08 Score=87.59 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=61.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeE--EEEccCC-----CceEEEEEcCHHHHHHHHHh--hc----CC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINI--LVISPKK-----RGSALLEFEHADSARRAKLY--EL----GL 475 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~--V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~----~~ 475 (512)
..++|-|.= .+..+|+++|+++|+.||.|.. |.|..++ +|+|||+|.+. +|.+|+.. +. .+
T Consensus 22 ~~~~lfV~n-----L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 22 ANDTIILRN-----LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCEEEECS-----CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 445665541 2236899999999999999976 8887654 79999999999 99999974 55 67
Q ss_pred CCCceEEEecCCCcccc
Q psy3926 476 PNCPLTLNYLNPDVERE 492 (512)
Q Consensus 476 ~~~pL~V~wa~~~~~r~ 492 (512)
.+.+|.|.|+.+...+.
T Consensus 96 ~gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRDM 112 (131)
T ss_dssp GGCCCCCEECCCSCCCC
T ss_pred CCEEEEEEECCCCCCCC
Confidence 78999999998765544
No 167
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.66 E-value=2.5e-08 Score=91.41 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=63.1
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|.= .+..+|++.|+++|+.||.|..|.|..++ +|+|||+|.+.++|.+||. ++..+.+.+|
T Consensus 70 ~~~~~l~V~n-----Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTS-----IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445666652 22369999999999999999999998753 7999999999999999997 4666788999
Q ss_pred EEEecCCCcccc
Q psy3926 481 TLNYLNPDVERE 492 (512)
Q Consensus 481 ~V~wa~~~~~r~ 492 (512)
.|.|+.+++++.
T Consensus 145 ~V~~a~~~~~~~ 156 (165)
T 1rk8_A 145 QVDWCFVKGPKR 156 (165)
T ss_dssp EEEESEECC---
T ss_pred EEEEecCCCCCC
Confidence 999998776654
No 168
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.66 E-value=4.1e-08 Score=82.58 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=62.2
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V 482 (512)
..++|-|.= .+..+|+++|+++|+.|| |.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 14 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 14 PPYTAYVGN-----LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp SCEEEEEES-----CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCeEEEEeC-----CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 445666641 223699999999999998 9999988654 7999999999999999994 245567789999
Q ss_pred EecCCCcccc
Q psy3926 483 NYLNPDVERE 492 (512)
Q Consensus 483 ~wa~~~~~r~ 492 (512)
.|+.+++.+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dng_A 88 DIAEGRKQDK 97 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9998866554
No 169
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.66 E-value=2.2e-08 Score=84.20 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=60.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKL-YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~ 481 (512)
..++|-|. +....+|+++|+++|+.|| |.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 18 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 18 PPYTAFLG-----NLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp --CEEEES-----CCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred CCcEEEEe-----CCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 44566654 1223689999999999999 9999997654 7999999999999999995 35667789999
Q ss_pred EEecCCCc
Q psy3926 482 LNYLNPDV 489 (512)
Q Consensus 482 V~wa~~~~ 489 (512)
|.|+.+..
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998754
No 170
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.65 E-value=5.3e-08 Score=84.74 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=62.8
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V 482 (512)
..++|-|.= ....+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 34 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 34 TGAKLLVSN-----LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp SCEEEEEES-----CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 335566641 2236999999999999999999999865 47999999999999999997 467778899999
Q ss_pred EecCCCcc
Q psy3926 483 NYLNPDVE 490 (512)
Q Consensus 483 ~wa~~~~~ 490 (512)
.|+.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99976543
No 171
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=6.7e-08 Score=80.69 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=61.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhcc--CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEe
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKY--GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNY 484 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~f--G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~w 484 (512)
..++|-|.= .+..+|+++|+++|+.| |.|..|.+. +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus 14 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRN-----LMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEES-----CCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeC-----CCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 445666651 22369999999999999 999999875 6899999999999999997 46667789999999
Q ss_pred cCCCccc
Q psy3926 485 LNPDVER 491 (512)
Q Consensus 485 a~~~~~r 491 (512)
+.++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2cpd_A 86 AKPVDKD 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 172
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.63 E-value=2.4e-08 Score=78.81 Aligned_cols=61 Identities=10% Similarity=0.243 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL 485 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa 485 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+.. +..+.+.+|.|+||
T Consensus 9 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 9 PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp SSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 46899999999999999999998754 379999999999999999974 45567788999886
No 173
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.1e-08 Score=87.69 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=62.2
Q ss_pred ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEe
Q psy3926 411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL-YELGLPNCPLTLNY 484 (512)
Q Consensus 411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~w 484 (512)
++|-|.= ....+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus 26 ~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 26 RTVFCMQ-----LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp TEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred CEEEEeC-----CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 4666642 1236999999999999999999999853 37999999999999999994 35667789999999
Q ss_pred cCCCcccc
Q psy3926 485 LNPDVERE 492 (512)
Q Consensus 485 a~~~~~r~ 492 (512)
+.+++.+.
T Consensus 101 a~~~~~~~ 108 (114)
T 2cq4_A 101 SQAEKNRL 108 (114)
T ss_dssp HHHHHHHH
T ss_pred cCCCccCC
Confidence 98765543
No 174
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=5.7e-08 Score=83.08 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=62.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCe----eEEEEcc-CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKI----NILVISP-KKRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I----~~V~i~~-~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. + .+..+|+++|+++|+.||.| ..+.+.. ..+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 24 ~~~~l~V~-n----Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 24 PNKVLYLK-N----LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCSEEEEE-C----CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCEEEEe-C----CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34566554 1 22369999999999999999 4444443 448999999999999999997 46777889999
Q ss_pred EEecCCCccccc
Q psy3926 482 LNYLNPDVEREE 493 (512)
Q Consensus 482 V~wa~~~~~r~~ 493 (512)
|.|+.++..+..
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998766543
No 175
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.63 E-value=5.2e-08 Score=82.29 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=61.1
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
...++|-|. + .+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 27 ~~~~~l~V~-n----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 27 ETGGKLLVS-N----LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCSEEEEEE-S----CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEe-C----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345667665 1 22369999999999999999999988643 7899999999999999998 56777889999
Q ss_pred EEecC
Q psy3926 482 LNYLN 486 (512)
Q Consensus 482 V~wa~ 486 (512)
|.|+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 176
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=9.6e-08 Score=79.05 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=55.4
Q ss_pred CCCHHHHHHHhhccCCeeEE-EEccC-CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 426 VYTRESLTKIFSKYGKINIL-VISPK-KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V-~i~~~-kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
.+|+++|+++|+.||.|.+| .|..+ ..|.|||+|.+.++|..|+. ++..+.+.+|.|.|+.++
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 26 HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 68999999999999999999 46665 35679999999999999997 467778899999999876
No 177
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.63 E-value=3e-08 Score=85.33 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=59.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~ 481 (512)
..++|-|. +....+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.
T Consensus 39 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 39 EGCNLFIY-----HLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CSEEEEEE-----CSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556553 222469999999999999999999998643 79999999999999999973 6667788999
Q ss_pred EEecC
Q psy3926 482 LNYLN 486 (512)
Q Consensus 482 V~wa~ 486 (512)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99984
No 178
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.62 E-value=1.3e-08 Score=85.44 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+.++..+.+.+|.|.|+.++.....
T Consensus 19 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~~~~ 91 (102)
T 2xs2_A 19 VRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLST 91 (102)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC----
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcchhh
Confidence 36999999999999999999998865 3799999999999999999855667788999999987655443
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.62 E-value=8.9e-08 Score=82.28 Aligned_cols=79 Identities=20% Similarity=0.163 Sum_probs=60.2
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
.+++|.|+=-..+..-..-++++|++.|++||.|.+|.|+.+ .+|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 455666663332221123478999999999999999999864 27999999999999999997 4666788999
Q ss_pred EEEecCC
Q psy3926 481 TLNYLNP 487 (512)
Q Consensus 481 ~V~wa~~ 487 (512)
.|.|+.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999853
No 180
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=3.5e-08 Score=79.89 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+..|+|.|++
T Consensus 15 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 15 PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 369999999999999999999987653 7999999999999999997 4677777778877764
No 181
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=1.5e-07 Score=80.71 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhh--hC--CCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYE--LG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e--~g--~~~nPl~~~~l~~~~ 101 (512)
+.+++.|+++|++||.|.+|.|.. .||.|+|||.+.++|..|+..- .+ +-..||.|.|-.+..
T Consensus 26 ~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 26 SVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 589999999999999999998765 4799999999999999999742 33 557899999987553
No 182
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=2.5e-07 Score=77.33 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~ 102 (512)
..|++.|+++|++||.|..|.|....+|.|+|+|.+.++|+.|+. +..-+...+|+|.|-.+...
T Consensus 11 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 11 GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 589999999999999999998876678999999999999999997 45556678999999986643
No 183
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.60 E-value=3.1e-08 Score=93.99 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.++.++..
T Consensus 113 ~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 113 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHH
T ss_pred cccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccch
Confidence 36999999999999999999998764 37999999999999999996 46777889999999998766543
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=5.1e-08 Score=83.85 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCCcceeEEEeecCCCCC-C-----CCCHHHHHHHhhccCCeeEEEEcc-CCCceEEEEEcCHHHHHHHHH--hhcCCCC
Q psy3926 407 NPENYRLRIRWKSSSTDT-D-----VYTRESLTKIFSKYGKINILVISP-KKRGSALLEFEHADSARRAKL--YELGLPN 477 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~-~-----~~te~~L~~iFs~fG~I~~V~i~~-~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~ 477 (512)
....++|.|+--..+..- . .-++++|+++|++||.|.+|.|.. ..+|+|||+|.+.++|.+|+. ++..+.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345677888765432210 0 013689999999999999998753 248999999999999999997 3556678
Q ss_pred CceEEEecCCCcc
Q psy3926 478 CPLTLNYLNPDVE 490 (512)
Q Consensus 478 ~pL~V~wa~~~~~ 490 (512)
.+|.|.|+.++..
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 8999999977543
No 185
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=2.8e-08 Score=82.62 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=60.0
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~ 481 (512)
..++|-|.= .+..+|+++|+++|+.||.|..+.++.+ .+|+|||+|.+.++|.+|+.. +..+.+.+|.
T Consensus 14 ~~~~l~v~n-----Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 14 GPTIIKVQN-----MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp SSEEEEEES-----CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 445666642 2236999999999999999987665543 279999999999999999963 5667789999
Q ss_pred EEecCCCc
Q psy3926 482 LNYLNPDV 489 (512)
Q Consensus 482 V~wa~~~~ 489 (512)
|.|+.+++
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99998654
No 186
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.57 E-value=5.3e-08 Score=82.66 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=53.8
Q ss_pred CHHHHHHHhhccCCeeEEEEcc---CCCceEEEEEcCHHHHHHHHH--hhcCCCCC-ceEEEecCCC
Q psy3926 428 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKL--YELGLPNC-PLTLNYLNPD 488 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~i~~---~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~-pL~V~wa~~~ 488 (512)
|++.|+++|+.||.|.+|.|.. ..+|+|||+|.+.++|.+|+. ++..+.+. +|.|.|+.+.
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 7899999999999999999874 237999999999999999998 46777887 9999999754
No 187
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.56 E-value=5.7e-08 Score=80.43 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=61.6
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|.-- +..+|+++|+++|+.||.|..|......+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.
T Consensus 15 ~~~~l~V~nL-----~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNL-----SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESC-----CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4456766522 23689999999999999998773223458999999999999999997 4566788999999998
Q ss_pred CCccc
Q psy3926 487 PDVER 491 (512)
Q Consensus 487 ~~~~r 491 (512)
++..+
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76654
No 188
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.55 E-value=2e-07 Score=80.62 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCc-----eEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCP-----LTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~p-----L~V~wa~~~ 488 (512)
..+|+++|+++|+.||.|..|.|..+ |+|||+|++.++|.+||. ++..+.+.+ +.|....+.
T Consensus 26 ~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 26 PSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 36899999999999999999999876 999999999999999997 356667777 666666553
No 189
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.54 E-value=1e-07 Score=83.84 Aligned_cols=72 Identities=25% Similarity=0.260 Sum_probs=58.7
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
..++|-|. +.+..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 62 ~~~~l~v~-----nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 62 TKRVLYVG-----GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SCCEEEEE-----CCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCcEEEEE-----eCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566664 22246999999999999999999998764 37999999999999999996 45667789999
Q ss_pred EEec
Q psy3926 482 LNYL 485 (512)
Q Consensus 482 V~wa 485 (512)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.54 E-value=9.8e-08 Score=93.99 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=51.9
Q ss_pred CHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCC------------CCCceEEEecCCCccc
Q psy3926 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGL------------PNCPLTLNYLNPDVER 491 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~------------~~~pL~V~wa~~~~~r 491 (512)
+|+.|+++|+.||.|++|.|+.. +|+|||+|.+.++|..|+.. +..+ .+.+|.|.||...|..
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~-kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVES-KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred cHHHHHHHHHccCCEEEEEEECC-CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 79999999999999999998864 89999999999999999973 5555 5679999999875543
No 191
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=4.1e-08 Score=84.58 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=63.2
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCe-eEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKI-NILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I-~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V 482 (512)
..++|-|.- .+-.+|+++|+++|+.||.| .+|.|+.+ .+|+|||+|.+.++|.+||.. +..+.+.+|.|
T Consensus 14 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITN-----IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp CCCEEEEES-----CCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CccEEEEeC-----cCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 445666642 22369999999999999999 88988754 489999999999999999974 45567789999
Q ss_pred EecCCCcccc
Q psy3926 483 NYLNPDVERE 492 (512)
Q Consensus 483 ~wa~~~~~r~ 492 (512)
.|+.++..+.
T Consensus 89 ~~a~~~~~~~ 98 (114)
T 2cpy_A 89 HVVTLEDMRE 98 (114)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHH
Confidence 9998766554
No 192
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.52 E-value=5.3e-08 Score=81.49 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCcccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVERE 492 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r~ 492 (512)
..+|+++|+++|+.||.|..++|.. ..+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++..+.
T Consensus 27 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 27 PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDGTR 99 (101)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCCSS
T ss_pred CCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCCCC
Confidence 4699999999999999998833332 348999999999999999997 3566778999999998876653
No 193
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.9e-07 Score=77.31 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.||.|.+|.+......+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++...
T Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 18 RGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp TTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCCC
Confidence 4699999999999999999984333222299999999999999997 345566789999999765443
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.51 E-value=2e-07 Score=86.37 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=58.9
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
.+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++.
T Consensus 15 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 15 RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 589999999999999999999999889999999999999999996 4677888999999998653
No 195
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=3.2e-07 Score=77.64 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHhhccCCeeE-EEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINI-LVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~-V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r 491 (512)
-..|+++|+++|+.||.|.+ |.|+.+ .+|+|||+|.+.++|.+|+.. +..+.+.+|.|.++..+...
T Consensus 25 ~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 25 FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp TTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTSC
T ss_pred CCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHHHH
Confidence 46899999999999999987 777643 379999999999999999974 55667789999998765433
No 196
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.4e-07 Score=81.60 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC----CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG----LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g----~~~nPl~~~~l~~~~~~ 103 (512)
..|++.|+++|++||.|.+|.|... ||.|+|||++.++|+.|+..-.| +-..||.|.|-.+....
T Consensus 27 ~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 27 DVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp TSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 5899999999999999999987654 79999999999999999974333 34679999998765443
No 197
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.6e-07 Score=80.25 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+.+|++||.|.+|.|... ||.|+|||++.++|..|+.. ..| +-..||.|.|-.+...
T Consensus 26 ~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 26 EVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 5899999999999999999987654 89999999999999999973 233 4567999999875533
No 198
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=87.19 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHhhccC--CeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYG--KINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG--~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~ 488 (512)
..+|+++|+++|+.|| .|.+|.|..++ +|+|||+|.+.++|.+||.. +..+.+.+|.|.|+.+.
T Consensus 65 ~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 65 WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 4699999999999999 99999987653 79999999999999999974 67778899999999764
No 199
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=1.7e-07 Score=78.39 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=59.4
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL--YELGLPNCPLT 481 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~ 481 (512)
...++|-|.= .+..+|+++|+++|+.||.| .|+. ..+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus 13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 13 GESKTLVLSN-----LSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSEEEEES-----CCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456777752 22369999999999999988 3333 248999999999999999997 46667789999
Q ss_pred EEecCCCccc
Q psy3926 482 LNYLNPDVER 491 (512)
Q Consensus 482 V~wa~~~~~r 491 (512)
|.|+.+++..
T Consensus 85 v~~a~~~~~~ 94 (101)
T 2fc9_A 85 LELQGPRGSP 94 (101)
T ss_dssp EEECSSCCCC
T ss_pred EEEcCCCCCC
Confidence 9999876544
No 200
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=3.5e-07 Score=76.03 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CC--CCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LP--NCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~--~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.|.+|.|... +|.|+|+|.+.++|..|+..-.| +. ..+|+|.|-.+..
T Consensus 28 ~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 28 NTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 5899999999999999999988765 89999999999999999974333 33 5799999987663
No 201
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.49 E-value=1.2e-07 Score=76.47 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=47.4
Q ss_pred CHHHHHHHhhccCCeeEEEEcc---CCCceEEEEEcCHHHHHHHHH--hhcCCCCC-ceEE
Q psy3926 428 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKL--YELGLPNC-PLTL 482 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~i~~---~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~-pL~V 482 (512)
|+++|+++|++||.|.+|.|.. ..+|+|||+|.+.++|.+|+. ++..+.+. +|.|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 7899999999999999999874 247999999999999999997 46666677 7766
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.49 E-value=1.4e-07 Score=81.08 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=51.7
Q ss_pred HHHHHHHhhccCCeeEEEEccC-------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926 429 RESLTKIFSKYGKINILVISPK-------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP 487 (512)
Q Consensus 429 e~~L~~iFs~fG~I~~V~i~~~-------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~ 487 (512)
+++|++.|++||.|.+|.|+.+ .+|+|||+|++.++|.+|+. ++..+.+.+|.|.|+..
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4789999999999999999864 37999999999999999997 46777889999999753
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.48 E-value=3.2e-07 Score=87.89 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=64.9
Q ss_pred CCcceeEEEeecCCCCCC-CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEe
Q psy3926 408 PENYRLRIRWKSSSTDTD-VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNY 484 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~-~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~w 484 (512)
...++|-|. +.+. .+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus 32 ~~~~~l~V~-----nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVS-----NLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEE-----SCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEe-----CCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 355677775 1223 589999999999999999999999889999999999999999996 46777889999999
Q ss_pred cCCC
Q psy3926 485 LNPD 488 (512)
Q Consensus 485 a~~~ 488 (512)
+.+.
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 204
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.48 E-value=6.9e-07 Score=94.83 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
..+|++.|.++|+.||.|..|.|+.+ .+|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.+...
T Consensus 112 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 112 YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 46999999999999999999988754 38999999999999999996 46777889999999987543
No 205
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.3e-07 Score=76.13 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=61.3
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~ 483 (512)
..++|-|.= .+..+|+++|+++|+.| .|.+|.|..+. +|+|||+|.+.++|.+|+. ++..+.+.+|.|.
T Consensus 9 ~~~~l~v~n-----Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRG-----APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCEEEEEC-----CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CccEEEEEC-----CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 445565542 22369999999999999 89999887642 7899999999999999997 3455677899999
Q ss_pred ecCCCccc
Q psy3926 484 YLNPDVER 491 (512)
Q Consensus 484 wa~~~~~r 491 (512)
|+.+++..
T Consensus 83 ~a~~~~~s 90 (91)
T 2dgw_A 83 REKSGPSS 90 (91)
T ss_dssp EESSCCCC
T ss_pred ECCcCCCC
Confidence 99887653
No 206
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=5.7e-07 Score=74.07 Aligned_cols=66 Identities=24% Similarity=0.468 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|..+....
T Consensus 16 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 16 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 589999999999999999998743 3479999999999999999973 33355789999999876544
No 207
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.47 E-value=3.4e-07 Score=81.34 Aligned_cols=62 Identities=31% Similarity=0.475 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCc-eEEEEeccHHHHHHHHHhhhCCC----CCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRG-SALLEFEHADSARRAKLYELGLP----NCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g-~A~vef~~~~aa~~a~~~e~g~~----~nPl~~~~l~~~ 100 (512)
.-+++.|+++|++||.|..|+|-.+ .| .|+|||.+.++|..|+..--|.. .++|.|.|-.+.
T Consensus 36 ~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 36 PITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp CCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4789999999999999999988654 59 59999999999999998766653 258999998766
No 208
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.46 E-value=1.6e-07 Score=80.35 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=46.4
Q ss_pred HHHHHh-hccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926 431 SLTKIF-SKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 485 (512)
Q Consensus 431 ~L~~iF-s~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa 485 (512)
+|++.| ++||.|.+|.|+.++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 344444 999999999998754 8999999999999999997 466677889999986
No 209
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=6.9e-07 Score=73.20 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|. +|.|+|+|.+.++|..|+..-.| +-..+|+|.|-.+....
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 19 EATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 58999999999999999999886 79999999999999999965333 56789999999876554
No 210
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.45 E-value=2e-07 Score=81.54 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=52.4
Q ss_pred CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCC
Q psy3926 39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~ 100 (512)
.+++.|+.+|++||.|.+|.|. +.||.|+|||.+.++|..|+.. ..| +-..||.|.|-.+.
T Consensus 38 ~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 38 YSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 8999999999999999999875 4579999999999999999973 334 56789999997644
No 211
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.44 E-value=3.7e-07 Score=85.27 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+....
T Consensus 98 ~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 98 FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp SCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 36899999999999999999999864 37999999999999999998 4677788999999997643
No 212
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.44 E-value=1.2e-07 Score=78.12 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=58.0
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTL 482 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V 482 (512)
.++|-|.-- +..+|+++|+++|+.||.|..+.+..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 15 ~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNM-----PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECC-----CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCC-----CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 456666522 236999999999999999987766642 37999999999999999997 466778899999
Q ss_pred EecC
Q psy3926 483 NYLN 486 (512)
Q Consensus 483 ~wa~ 486 (512)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9875
No 213
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.44 E-value=8.3e-07 Score=76.88 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+..- .-+-..+|+|.|-.++...
T Consensus 18 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 18 ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 589999999999999999998754 45799999999999999999742 3345689999999866544
No 214
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.2e-07 Score=77.52 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|.+|.|....+|.|+|+|.+.++|+.|.......-..+|.|.|-.|...
T Consensus 16 ~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 16 DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence 58999999999999999999987778999999999999999776655544567889998876544
No 215
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=5.1e-07 Score=76.95 Aligned_cols=64 Identities=23% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCCCHHH----HHHHhhcc-CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926 425 DVYTRES----LTKIFSKY-GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE 493 (512)
Q Consensus 425 ~~~te~~----L~~iFs~f-G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~ 493 (512)
..++++. |+++|++| |+|.+|+ .|+|||+|.+.++|.+|++ ++..+.+.||+|+||.....--.
T Consensus 19 ~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 19 ANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 4577777 66899999 5998883 2999999999999999997 47888999999999988766543
No 216
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.44 E-value=3.1e-07 Score=78.78 Aligned_cols=61 Identities=28% Similarity=0.417 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC----CCCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL----PNCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~----~~nPl~~~~l~~ 99 (512)
+.|++.|+++|++||.|.+|.|.+ .||.|+|||.+.++|..|+..=.|. -..||.|+|=.+
T Consensus 32 ~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 32 GVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 589999999999999999997754 5799999999999999999764443 367888888543
No 217
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.43 E-value=6.1e-07 Score=83.55 Aligned_cols=63 Identities=30% Similarity=0.426 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC-CCceEEEEeccHHHHHHHHHhhhCCC----CCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK-KRGSALLEFEHADSARRAKLYELGLP----NCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-~~g~A~vef~~~~aa~~a~~~e~g~~----~nPl~~~~l~~~ 100 (512)
..|++.|+++|++||+|..|+|-.+ .+|.|+|||.+.++|+.|+..--|.. .++|+|+|-.+.
T Consensus 57 ~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 57 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 5899999999999999999988544 47899999999999999998655532 278999998765
No 218
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.43 E-value=2e-07 Score=83.00 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=60.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEE--------EEc--cCCCceEEEEEcCHHHHHHHHH--hhcCCC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINIL--------VIS--PKKRGSALLEFEHADSARRAKL--YELGLP 476 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V--------~i~--~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~ 476 (512)
..++|-|.== . ..+|+++|+++|+.||.|..+ .+. ...+|+|||+|.+.++|.+|+. ++..+.
T Consensus 44 ~~~~l~V~nL-p----~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 44 PNCRIYVKNL-A----KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCSEEEEEEE-C----TTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCEEEEeCC-C----CCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4456655421 1 259999999999999999763 333 2458999999999999999997 467778
Q ss_pred CCceEEEecCCCccccc
Q psy3926 477 NCPLTLNYLNPDVEREE 493 (512)
Q Consensus 477 ~~pL~V~wa~~~~~r~~ 493 (512)
+.+|.|.|+.+..++..
T Consensus 119 g~~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 119 GKPMVVQFARSARPKQD 135 (143)
T ss_dssp TEECEEEECCCSCC---
T ss_pred CcEEEEEECCCCCCccC
Confidence 89999999987655543
No 219
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.6e-07 Score=81.21 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
.+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|..|+. ++..+.+.+|.|.|+.+...
T Consensus 11 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 11 AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 58999999999999999999997543 7999999999999999996 46667789999999976544
No 220
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=1.6e-07 Score=80.53 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+.+|++||.|.+|.|-. .+|.|+|||++.++|..|+.. ..+ +-..||.|.|-.+.
T Consensus 27 ~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 27 KNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 479999999999999999998754 469999999999999999974 333 55779999998743
No 221
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.42 E-value=4.1e-07 Score=81.34 Aligned_cols=67 Identities=25% Similarity=0.320 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|..|+. ++..+.+.+|.|.|+.+....
T Consensus 13 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (168)
T 1b7f_A 13 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES 86 (168)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc
Confidence 369999999999999999999988653 5899999999999999996 466677899999999876543
No 222
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.80 E-value=2.8e-08 Score=85.57 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=58.3
Q ss_pred CCCHHHHHHHhhccCCeeE--------EEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926 426 VYTRESLTKIFSKYGKINI--------LVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~--------V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~ 490 (512)
.+|+++|+++|+.||.|.. |.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+++.
T Consensus 18 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 18 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 5899999999999999998 777654 37999999999999999997 46777889999999998766
Q ss_pred cc
Q psy3926 491 RE 492 (512)
Q Consensus 491 r~ 492 (512)
+.
T Consensus 98 ~~ 99 (116)
T 2lcw_A 98 FN 99 (116)
Confidence 64
No 223
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=6.8e-07 Score=75.21 Aligned_cols=66 Identities=20% Similarity=0.371 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC------CCceEEEEeccHHHHHHHHHh---hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k------~~g~A~vef~~~~aa~~a~~~---e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|... .+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 26 QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 5899999999999999999988554 489999999999999999964 23345679999999866443
No 224
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.42 E-value=2.3e-07 Score=81.14 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=60.6
Q ss_pred CcceeEEEeecCCCCC--C---CCCHHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDT--D---VYTRESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~--~---~~te~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
.++.|.|+=-..+... . .-.+++|++.|++||.|.+|.|..+. +|+|||+|.+.++|.+|++ ++..+.+.+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445666544443321 1 12357889999999999999998764 8999999999999999997 4677788999
Q ss_pred EEEecCC
Q psy3926 481 TLNYLNP 487 (512)
Q Consensus 481 ~V~wa~~ 487 (512)
.|.|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999853
No 225
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.42 E-value=5.3e-07 Score=80.18 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r 491 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+....
T Consensus 12 ~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 85 (167)
T 1fxl_A 12 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 85 (167)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Confidence 368999999999999999999988654 5999999999999999997 466677899999999876544
No 226
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.42 E-value=3.5e-07 Score=82.06 Aligned_cols=63 Identities=30% Similarity=0.426 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCce-EEEEeccHHHHHHHHHhhhCCC----CCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGS-ALLEFEHADSARRAKLYELGLP----NCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~-A~vef~~~~aa~~a~~~e~g~~----~nPl~~~~l~~~ 100 (512)
.-|++.|+++|++||.|..|+|-.+.+|- |+|||.+.++|..|+..=-|.. .++|+|.|-.+.
T Consensus 39 ~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 39 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 47999999999999999999887776776 9999999999999998655532 268999998755
No 227
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.41 E-value=3.2e-07 Score=74.24 Aligned_cols=64 Identities=27% Similarity=0.367 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc------CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.|..+.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|+|..|+.
T Consensus 15 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 15 NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 589999999999999999997632 2689999999999999999973 333456789999987663
No 228
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=4e-07 Score=75.76 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..|++.|+++|++||.|..|.|. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 48999999999999999999884 6689999999999999999963 33345678999998866444
No 229
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=4.8e-07 Score=79.86 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|.+|.|... ||.|+|||.+.++|..|+.. ..| +-..||.|.|-.+....
T Consensus 42 ~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 42 DVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp TCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 5899999999999999999977554 79999999999999999973 222 55679999998765443
No 230
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.39 E-value=3e-07 Score=89.27 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHhhccC--CeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYG--KINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG--~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
-.+|+++|+++|+.|| .|.+|.|..++ +|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.+.
T Consensus 78 ~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 78 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 3699999999999999 99999987653 7999999999999999997 467788899999999754
No 231
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=8.8e-07 Score=73.71 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 21 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 21 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCccc
Confidence 589999999999999999998743 3589999999999999999972 22344679999999876544
No 232
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.5e-07 Score=77.63 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=59.6
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLN 483 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~ 483 (512)
..++|.|.-- +-..|+++|+++|+.||.| +|.|+.++ +|+|||+|.+.++|.+||.. ...+.+.+|.|.
T Consensus 14 ~~~~l~V~nL-----p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGL-----PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp SSCEEEEESC-----CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 4456766522 2368999999999999955 88887653 78999999999999999963 455667899999
Q ss_pred ecCCCcc
Q psy3926 484 YLNPDVE 490 (512)
Q Consensus 484 wa~~~~~ 490 (512)
++.+++.
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 233
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.39 E-value=4.8e-07 Score=83.09 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=60.7
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTL 482 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V 482 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus 12 ~~~~l~V~-----nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 12 QLRKLFIG-----GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp GGGEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 45667664 122369999999999999999999988643 78999999999999999975 34466789999
Q ss_pred EecCCCccc
Q psy3926 483 NYLNPDVER 491 (512)
Q Consensus 483 ~wa~~~~~r 491 (512)
.|+.+....
T Consensus 87 ~~~~~~~~~ 95 (196)
T 1l3k_A 87 KRAVSREDS 95 (196)
T ss_dssp EECCC----
T ss_pred ecccCcccc
Confidence 999875443
No 234
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.8e-07 Score=79.28 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=55.2
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHhhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLYELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL 480 (512)
..++|-|. +.+..+|+++|+++|++||.|. +.++.+ .+|+|||+|.+.++|.+||..-.++.+..|
T Consensus 7 ~~~~lfVg-----nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVG-----GLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEE-----CCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEc-----CCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 34566664 1223699999999999999999 766642 379999999999999999986545566677
Q ss_pred EEEecCC
Q psy3926 481 TLNYLNP 487 (512)
Q Consensus 481 ~V~wa~~ 487 (512)
.|..+..
T Consensus 81 ~~~~~~~ 87 (114)
T 2dnl_A 81 LCVSSPT 87 (114)
T ss_dssp EEECCSS
T ss_pred EeccCCC
Confidence 7766544
No 235
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.38 E-value=3.2e-07 Score=75.13 Aligned_cols=62 Identities=10% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~ 488 (512)
..+|+++|+++|++| .|.+|.|. ..+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+...
T Consensus 15 ~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp SSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 469999999999999 99999885 568999999999999999997 466678899999999553
No 236
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.38 E-value=6.7e-07 Score=75.09 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHhhhC--CCC---CCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLYELG--LPN---CPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~e~g--~~~---nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|... .+|.|+|+|.+.++|..|+..-.| +.. .||.|.|-.+...+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 26 QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 5899999999999999999977543 379999999999999999975344 234 79999999876544
No 237
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.38 E-value=3.9e-07 Score=73.70 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|.+|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+-..+|+|.|-.+.
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 17 EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 589999999999999999997744 3479999999999999999974 22345678999997654
No 238
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.37 E-value=1e-06 Score=82.06 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=62.5
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTL 482 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V 482 (512)
.++|-|. + .+..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus 28 ~~~l~V~-n----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVG-S----IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEE-C----CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCEEEEE-C----CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3466664 2 2236999999999999999999999754 38999999999999999997 467788899999
Q ss_pred EecCCCccc
Q psy3926 483 NYLNPDVER 491 (512)
Q Consensus 483 ~wa~~~~~r 491 (512)
.|+......
T Consensus 103 ~~~~~~~~~ 111 (216)
T 2qfj_A 103 GRPSNIGQA 111 (216)
T ss_dssp ECCSCCGGG
T ss_pred ecCCCcccc
Confidence 998876543
No 239
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=6.9e-07 Score=74.30 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|+ +|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+...
T Consensus 22 ~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 22 NVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp CCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 48999999999999999999995 79999999999999999975333 3478999999875533
No 240
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.36 E-value=5.5e-07 Score=85.15 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=54.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~ 487 (512)
..|++.|+++|+.||.|.+|.|+.+ .+|+|||+|++.++|.+|+.. +..+.+.+|.|.|+..
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 5899999999999999999999853 379999999999999999974 4456778999999865
No 241
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=3.8e-07 Score=73.57 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh---hhCCCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~---e~g~~~nPl~~~~l 97 (512)
..+++.|+++|++||.|..|.|.. .+|.|+|+|.+.++|..|+.. ..-+...||+|.|-
T Consensus 23 ~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 23 TITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 589999999999999999998765 379999999999999999972 23344678888883
No 242
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=1.5e-06 Score=72.13 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhh--CCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYEL--GLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~--g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|..|+..=. -+...+|+|.|-.+....
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 58999999999999999999874 3457999999999999999996422 234679999999876554
No 243
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=2.1e-07 Score=81.17 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHhhccCCeeEE-EEcc----CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCc
Q psy3926 425 DVYTRESLTKIFSKYGKINIL-VISP----KKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V-~i~~----~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~ 489 (512)
-.+|+++|+++|+.||.|.++ +|.. ..+|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.++.
T Consensus 35 ~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 35 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence 369999999999999999874 4432 237999999999999999997 4566778999999997654
No 244
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=8.6e-07 Score=76.17 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
+.+++.|+++|++||.|..|.|.. .+|.|+|+|.+.++|..|+..-.| +-..||.|.|-...
T Consensus 21 ~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 21 GTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 589999999999999999998864 679999999999999999975333 46789999997643
No 245
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.4e-07 Score=72.78 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=44.4
Q ss_pred CcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHcc
Q psy3926 253 DLYGLLELTID---CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL 306 (512)
Q Consensus 253 d~YeiLgv~~~---As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLs 306 (512)
.-|.||||+++ ++.++|+++||+|....|||+.++ ...+.+|+.|+++|.
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHH
Confidence 45889999999 999999999999999999999753 367888999999885
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=8.9e-07 Score=74.21 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+..-.| +-..+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 26 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 589999999999999999997753 3489999999999999999974233 45678999998866444
No 247
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=7.4e-07 Score=74.71 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|.|.|-.+...+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 26 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 589999999999999999997753 5679999999999999999974 33356789999999876554
No 248
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=1.1e-06 Score=74.66 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|... +|.|+|+|.+.++|..|+..=.| +...+|+|.|-.+....
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 36 GLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 5899999999999999999987665 89999999999999999964333 34678999998866443
No 249
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=6.2e-07 Score=74.38 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc--------CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP--------KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~--------k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+...+|.|.|-.+....
T Consensus 16 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 16 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 489999999999999999997653 4468999999999999999973 22344678999998866443
No 250
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=2e-07 Score=81.02 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=60.4
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC---eeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK---INILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~---I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL 480 (512)
..++|.|. +.+-.+|+++|+++|+.||. |.+|.|..++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 16 ~~~~l~V~-----nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLR-----GLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp CCCEEEEE-----SCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCcEEEEe-----CCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 34556664 22246999999999999999 8999988643 7899999999999999997 3455677899
Q ss_pred EEEecCCCc
Q psy3926 481 TLNYLNPDV 489 (512)
Q Consensus 481 ~V~wa~~~~ 489 (512)
.|.++....
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997544
No 251
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.33 E-value=4.5e-07 Score=81.15 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~ 490 (512)
..+|+++|+++|+.||.|.+|.|..++ +|+|||+|.+.++|.+|+.....+.+.+|.|.|+.++.+
T Consensus 13 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~ 83 (167)
T 2cjk_A 13 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE 83 (167)
T ss_dssp TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh
Confidence 469999999999999999999987643 699999999999999999876666778899999876543
No 252
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=7.2e-07 Score=74.52 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPL 480 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL 480 (512)
...++|-|.= .+..+|+++|+++|+.|+.| .++.+ .+|+|||+|.+.++|.+||. ++..+.+.+|
T Consensus 13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~~~---~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 13 QPSKTLFVKG-----LSEDTTEETLKESFDGSVRA---RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp CCCSSEEEEC-----CCTTCCHHHHHHTSTTCSEE---EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeC-----CCCccCHHHHHHHhcCCeEE---EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3456676651 22369999999999988654 33332 27999999999999999997 4666778999
Q ss_pred EEEecCCCcccc
Q psy3926 481 TLNYLNPDVERE 492 (512)
Q Consensus 481 ~V~wa~~~~~r~ 492 (512)
.|.|+.++.++.
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2fc8_A 85 TLDWAKPKGEGG 96 (102)
T ss_dssp EEEECCCCCSSS
T ss_pred EEEEecCCCCCC
Confidence 999999876654
No 253
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=7.7e-07 Score=74.87 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|.+|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+.
T Consensus 34 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 34 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 589999999999999999997743 3479999999999999999974 33355789999997654
No 254
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.32 E-value=6.5e-07 Score=78.69 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC---------CceEEEEEcCHHHHHHHHH--hhcCCCC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK---------RGSALLEFEHADSARRAKL--YELGLPN 477 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---------kg~A~V~F~s~~~A~~Ai~--~~~~~~~ 477 (512)
.+++|.|+=-..+..-..-.+++|++.|++||.|.+|.|+.++ +|+|||+|.+.++|.+|+. ++..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3455666543333211122478999999999999999998653 4899999999999999997 4677788
Q ss_pred CceEEEecC
Q psy3926 478 CPLTLNYLN 486 (512)
Q Consensus 478 ~pL~V~wa~ 486 (512)
.+|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=9.8e-07 Score=73.57 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+-..+|+|.|-.|..
T Consensus 28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 28 SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 589999999999999999997754 3469999999999999999964 333556899999987663
No 256
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=6.2e-07 Score=73.78 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHhhcCc-ccEEEeccCCCceEEEEeccHHHHHHHHHhhhC---CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGK-INILVISPKKRGSALLEFEHADSARRAKLYELG---LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~-v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g---~~~nPl~~~~l~~~~~~ 103 (512)
..|++.|+++|++||. |..++|. .+|.|+|+|.+.++|+.|+..-.| +...+|+|.|-.+...+
T Consensus 19 ~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 19 AVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp TCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred CCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 5899999999999999 7777663 479999999999999999975555 56789999999876544
No 257
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.31 E-value=6.9e-07 Score=76.51 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|. +|.|+|+|.+.++|..|+.. ..-+...+|.|.|-.+...
T Consensus 42 ~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 42 DVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp TCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 58999999999999999999876 79999999999999999974 3334678899999876643
No 258
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=1.3e-06 Score=73.31 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+...
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 26 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 489999999999999999998743 4579999999999999999974 3335578999999886644
No 259
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=2.2e-06 Score=71.52 Aligned_cols=65 Identities=25% Similarity=0.443 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+-..+|+|.|-.+...
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 23 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 589999999999999999998744 3579999999999999999964 3334568999999876644
No 260
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=6.8e-07 Score=74.82 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC-----CCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-----~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|... .+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 19 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 19 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 5899999999999999999977533 379999999999999999973 33355789999998866544
No 261
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=7.3e-07 Score=74.48 Aligned_cols=66 Identities=29% Similarity=0.317 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+-..+|+|.|-.+....
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 23 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 589999999999999999998743 4689999999999999999963 33345789999998866544
No 262
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.30 E-value=2.8e-06 Score=71.41 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC-----CCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL-----PNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~-----~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.|. ...||.|.|-.+....
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 24 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 589999999999999999998743 45799999999999999999754452 4589999999866443
No 263
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.30 E-value=1.1e-06 Score=83.35 Aligned_cols=77 Identities=19% Similarity=0.126 Sum_probs=61.4
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTL 482 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V 482 (512)
..+|-|. + .+..+|+++|+++|++||.|.+|.|+.++ +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus 15 ~~tlfVg---n--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 15 MASLYVG---D--LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp CCEEEEE---S--CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcEEEEe---C--CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 4566553 2 23469999999999999999999998643 69999999999999999974 45566788999
Q ss_pred EecCCCccc
Q psy3926 483 NYLNPDVER 491 (512)
Q Consensus 483 ~wa~~~~~r 491 (512)
.|+......
T Consensus 90 ~~~~~~~~~ 98 (213)
T 4f02_A 90 MWSQRDPSL 98 (213)
T ss_dssp EECCCCTHH
T ss_pred ccccccccc
Confidence 999765543
No 264
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.30 E-value=8.7e-07 Score=75.74 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC-----CCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-----~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|... .+|.|+|+|.+.++|+.|+..- .-+-..+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 26 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 5899999999999999999977543 3799999999999999999742 2234679999999866443
No 265
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.29 E-value=1.4e-06 Score=73.03 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
+.+++.|+++|++||.|..|.|+ +|.|+|+|.+.++|..|+..-.|. -..+|+|.|-.+.
T Consensus 34 ~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 34 NVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 48999999999999999999984 799999999999999999754443 3678999987654
No 266
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.29 E-value=1.2e-06 Score=78.56 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|....+|.|+|+|.+.++|..|+.. ..-+-..||+|+|-.|.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999998877899999999999999999974 33355789999997665
No 267
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.29 E-value=1.2e-06 Score=72.66 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
+.+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +-..+|.|.|-.+....
T Consensus 13 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 13 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 589999999999999999998753 3489999999999999999964233 34588999999876554
No 268
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=1.5e-06 Score=71.38 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|. +|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 21 ~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 21 TCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp SCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 58999999999999999999885 56999999999999999963 33345689999999876443
No 269
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.29 E-value=5.3e-07 Score=76.69 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=60.6
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC---eeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK---INILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~---I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL 480 (512)
..++|.|.- .+-..|+++|+++|+.||. |.+|.|..+ .+|+|||+|.+.++|.+|+.. +..+.+.+|
T Consensus 10 ~~~~l~V~n-----Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 10 DVFLIRAQG-----LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp SCCEEEEEC-----CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CccEEEEeC-----CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 445666652 2236899999999999998 899998864 378999999999999999973 455667899
Q ss_pred EEEecCCCc
Q psy3926 481 TLNYLNPDV 489 (512)
Q Consensus 481 ~V~wa~~~~ 489 (512)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999997644
No 270
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.1e-06 Score=73.65 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. ..+|.|+|+|.+.++|..|+..- .-+...+|+|.|-.++..
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 26 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 589999999999999999997743 35799999999999999999732 224468999999886543
No 271
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.28 E-value=7.2e-07 Score=75.32 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~ 99 (512)
..|++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|..|+.. ..=+...||+|+|-.|
T Consensus 30 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 30 NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 58999999999999999999663 24578999999999999999964 2233457899999654
No 272
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.28 E-value=1.4e-06 Score=76.40 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 48 ~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 48999999999999999999875 6689999999999999999964 34456789999998866443
No 273
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.1e-06 Score=73.57 Aligned_cols=65 Identities=12% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.-+...+|.|.|-.+...
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 26 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCC
T ss_pred cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCc
Confidence 589999999999999999997643 34689999999999999999853335567899999876544
No 274
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.28 E-value=8.8e-07 Score=75.12 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+.
T Consensus 37 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 589999999999999999998754 3379999999999999999974 22245678999997654
No 275
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=1.9e-06 Score=72.88 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--------hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--------ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--------e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|.+|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 26 DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 589999999999999999998752 4589999999999999999964 23455788999998766443
No 276
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.28 E-value=1e-06 Score=74.04 Aligned_cols=63 Identities=24% Similarity=0.361 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..|++.|+++|++||.|..|.|. +|.|+|+|.+.++|..|+.. ..-+...+|.|.|-.+....
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 22 TVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 58999999999999999999875 68999999999999999973 33345779999999866443
No 277
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.4e-06 Score=71.32 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|. +|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+....
T Consensus 20 ~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 20 ACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 58999999999999999999885 56999999999999999974233 45678999999876443
No 278
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.27 E-value=5.8e-07 Score=74.35 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~ 100 (512)
..|++.|+++|++||.|..|.|..+.+|-|+|+|.+.++|..+...+...-..+|.|.|-.|.
T Consensus 22 ~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 22 DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC--
T ss_pred CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCC
Confidence 589999999999999999998887789999999999999995543333333556777776554
No 279
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.27 E-value=1.4e-06 Score=75.57 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~ 101 (512)
..|++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+..
T Consensus 33 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 33 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 589999999999999999998743 3389999999999999999963 333556789999987543
No 280
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.5e-06 Score=72.85 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+...+|+|.|-.+...
T Consensus 24 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 24 RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 589999999999999999998753 4579999999999999999973 3335568999999886543
No 281
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.26 E-value=2.2e-06 Score=76.14 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=53.8
Q ss_pred CCCHHHHH----HHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~----~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+ ++|++||.|.+|.|.. +.+|.|+|+|.+.++|..|+..-.| +...||.|.|-.+....
T Consensus 40 ~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 40 EVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQ 113 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHH
T ss_pred CCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchh
Confidence 47888765 7999999999998853 6789999999999999999975444 45779999998765443
No 282
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.26 E-value=2e-06 Score=71.70 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. .+|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+...
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 26 DITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp TCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 589999999999999999998764 479999999999999999965333 4568999999876643
No 283
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.26 E-value=7.6e-07 Score=80.09 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=60.5
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC---eeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK---INILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPL 480 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~---I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL 480 (512)
..++|.|. +.+-..|+++|+++|+.||. |.+|.|+.++ +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus 43 ~~~~lfVg-----nLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLR-----GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp TTCEEEEE-----SCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34556654 22246999999999999999 8899888653 7899999999999999997 4566778999
Q ss_pred EEEecCCC
Q psy3926 481 TLNYLNPD 488 (512)
Q Consensus 481 ~V~wa~~~ 488 (512)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 284
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.26 E-value=1.2e-06 Score=70.18 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..+.|.. +.+|.|+|+|.+.++|..|+.. -.-+...||.|.|-.+.
T Consensus 12 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 12 NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999997642 3479999999999999999973 22234678999998765
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.25 E-value=2.3e-06 Score=74.25 Aligned_cols=66 Identities=15% Similarity=0.342 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+-..+|+|.|-.+....
T Consensus 46 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 46 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 589999999999999999998754 3689999999999999999973 33355689999998765443
No 286
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=7.4e-07 Score=74.70 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +-..+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 26 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 589999999999999999997743 3478999999999999999974222 34678999998876443
No 287
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.25 E-value=6.5e-07 Score=80.87 Aligned_cols=66 Identities=17% Similarity=0.068 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCccc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r 491 (512)
-.+|+++|+++|+.|| |.+|.|+.++ +|+|||+|++.++|.+||. +...+.+.+|.|.++.+++..
T Consensus 56 ~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 56 YKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp TTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC-
T ss_pred CCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCC
Confidence 4699999999999999 6799888643 7999999999999999995 345667789999998876543
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=1e-06 Score=75.30 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+..-.| +-..+|.|.|-.+.
T Consensus 40 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 40 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 589999999999999999998753 3489999999999999999974333 45678999997654
No 289
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.5e-06 Score=70.45 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHhhcCcccEE-Ee-ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINIL-VI-SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~-v~-~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..+ .| ..+..|.|+|+|.+.++|..|+.. ..-+-..+|.|.|..|.
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 26 HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 58999999999999999998 34 445667799999999999999974 33345689999998776
No 290
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=9.2e-07 Score=72.66 Aligned_cols=61 Identities=31% Similarity=0.420 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~ 98 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..= .-+...+|+|+|-.
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 26 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 589999999999999999997742 44789999999999999999742 22346788888853
No 291
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.3e-06 Score=71.96 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHhhcCcccEE-Eecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINIL-VISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~-v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..+ .|.. +.+|.|+|+|.+.++|+.|+.. -.-+-..||+|.|-.+....
T Consensus 16 ~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 16 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 58999999999999999988 5533 3579999999999999999973 22245688999998866443
No 292
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.23 E-value=1e-06 Score=70.89 Aligned_cols=60 Identities=28% Similarity=0.293 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l 97 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..=.| +...+|+|+|-
T Consensus 18 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 18 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 589999999999999999997732 3589999999999999999964222 34567888873
No 293
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=2.1e-06 Score=72.51 Aligned_cols=66 Identities=20% Similarity=0.350 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhhcCc-ccEEEecc------CCCceEEEEeccHHHHHHHHHhh----hCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGK-INILVISP------KKRGSALLEFEHADSARRAKLYE----LGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~-v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~e----~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||. |.+|.|.. +.+|.|+|+|.+.++|..|+..- .-+...+|+|.|-.|....
T Consensus 19 ~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 19 MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 5899999999999999 99998752 56899999999999999999742 2356778999999866543
No 294
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.23 E-value=1.9e-06 Score=70.41 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+-..+|+|.|-.+...
T Consensus 19 ~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 19 DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 589999999999999999997753 3579999999999999999974 3335568899999876633
No 295
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.22 E-value=2.5e-06 Score=75.41 Aligned_cols=63 Identities=30% Similarity=0.453 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|+.|+.. ..-+...+|.|.|-.+.
T Consensus 57 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 57 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 58999999999999999999774 25689999999999999999974 33345688999998754
No 296
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=72.20 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l 97 (512)
..+++.|+++|++||.|..|.|... .+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-
T Consensus 27 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 27 RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 5899999999999999999977543 378999999999999999973 22244678888874
No 297
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.22 E-value=1.2e-06 Score=72.69 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHhhcC-cccEEEec-----cCCCceEEEEeccHHHHHHHHHhh-hC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYG-KINILVIS-----PKKRGSALLEFEHADSARRAKLYE-LG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG-~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e-~g--~~~nPl~~~~l~~~~~ 102 (512)
..|++.|+++|++|| .|.+|.|. .+.+|.|+|+|.+.++|..|+..- -| +...||.|.|-.|.+.
T Consensus 12 ~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 12 AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 589999999999999 89998653 356899999999999999999632 22 3467999999876644
No 298
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.21 E-value=2.2e-06 Score=83.89 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=62.4
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHH----HHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHH--hhcCCCCCc
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKL--YELGLPNCP 479 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~----~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~p 479 (512)
...++|-|.== ...+|+++|+ ++|+.||.|.+|.|.. ..+|+|||+|.+.++|.+|+. ++..+.+.+
T Consensus 7 ~~~~~l~V~nl-----p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 7 RPNHTIYINNL-----NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCEEEEeCC-----CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34556666522 2368999976 8999999999999875 347999999999999999996 466778899
Q ss_pred eEEEecCCCcc
Q psy3926 480 LTLNYLNPDVE 490 (512)
Q Consensus 480 L~V~wa~~~~~ 490 (512)
|.|.|+.....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 299
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.21 E-value=1.9e-06 Score=67.87 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~ 96 (512)
..+++.|+++|++||.|..+.|.. +.+|.|+|+|.+.++|+.|++. ..-+...+|.|.|
T Consensus 10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 10 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 589999999999999999997743 4479999999999999999852 1123356787776
No 300
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.20 E-value=2.3e-06 Score=73.15 Aligned_cols=63 Identities=19% Similarity=0.413 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
+.+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+-..+|+|+|-.+.
T Consensus 37 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 37 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 589999999999999999997643 3479999999999999999973 33345789999998765
No 301
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=1.7e-06 Score=68.25 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh-hCCCCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e-~g~~~nPl~~~~ 96 (512)
..+++.|+++|++||.|.++.|.. +.+|.|+|+|.+.++|+.|+..- .-+...+|.|.|
T Consensus 11 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 75 (77)
T 1uaw_A 11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 75 (77)
T ss_dssp SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEe
Confidence 589999999999999999997743 34799999999999999999631 334456888887
No 302
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.20 E-value=2.6e-06 Score=75.14 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+...+|.|.|-.+...+
T Consensus 53 ~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 589999999999999999997643 3479999999999999999974 33356789999998866544
No 303
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.20 E-value=2e-06 Score=73.62 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. ..-+...+|+|.|-.+....
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 36 EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 589999999999999999997643 3468999999999999999964 22345678999998866444
No 304
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=2.7e-06 Score=72.53 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~ 98 (512)
..|++.|+++|++||.|.+|.|.. +.+|.|+|+|.+.++|..|+. ..| +...+|.|.|-.
T Consensus 22 ~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 22 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 489999999999999999997753 468999999999999999996 333 345789998854
No 305
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=2.3e-06 Score=75.08 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC-------CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL-------PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~-------~~nPl~~~~l~~~ 100 (512)
+.+++.|+++|++||.|.+|+|.. .||-|+|+|++.++|+.|+..-.|. ..-||.|.+...-
T Consensus 38 ~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 38 GVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 589999999999999999998865 4799999999999999999865554 2457999988744
No 306
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.19 E-value=2.1e-06 Score=69.34 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHhhcc----C-------CeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEe
Q psy3926 425 DVYTRESLTKIFSKY----G-------KINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNY 484 (512)
Q Consensus 425 ~~~te~~L~~iFs~f----G-------~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~w 484 (512)
..+|+++|+++|+.| | .|.+|.+..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|..
T Consensus 16 ~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 16 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 368999999999999 8 9999998765 8999999999999999994 24556677888863
No 307
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.19 E-value=1.2e-06 Score=74.21 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=50.8
Q ss_pred CHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhh--CCCCC-CcEEeecCCC
Q psy3926 40 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYEL--GLPNC-PLTLNYLNPD 100 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~--g~~~n-Pl~~~~l~~~ 100 (512)
+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-. -+... ||+|.|..+-
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 7899999999999999998752 457999999999999999997423 34566 9999998643
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=4.5e-07 Score=80.23 Aligned_cols=75 Identities=17% Similarity=0.090 Sum_probs=57.8
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCe----eEEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCce
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKI----NILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPL 480 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I----~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL 480 (512)
..+|.|. +.+-..|+++|+++|+.||.| .+|.|+.++ +|+|||+|.+.++|.+|+.. +..+.+..|
T Consensus 23 ~~~v~V~-----nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i 97 (123)
T 2dha_A 23 QVIVRMR-----GLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 97 (123)
T ss_dssp CCEEEEC-----SCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEE
T ss_pred CCEEEEe-----CCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEE
Confidence 3456554 223469999999999999986 688887542 79999999999999999974 455666788
Q ss_pred EEEecCCCc
Q psy3926 481 TLNYLNPDV 489 (512)
Q Consensus 481 ~V~wa~~~~ 489 (512)
.|..+.++.
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 898886543
No 309
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.19 E-value=1.2e-06 Score=72.31 Aligned_cols=64 Identities=30% Similarity=0.498 Sum_probs=53.6
Q ss_pred CCCHHHHH----HHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926 38 VYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~----~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~ 101 (512)
..+++.|+ ++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +...||+|.|-.+..
T Consensus 19 ~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 19 KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp TSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 58999999 9999999999998753 4579999999999999999974333 346889999987654
No 310
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.9e-06 Score=70.78 Aligned_cols=60 Identities=30% Similarity=0.357 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l 97 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+..=.| +-..+|+|+|-
T Consensus 27 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 27 SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 589999999999999999998743 4479999999999999999964222 34678888873
No 311
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.18 E-value=2.9e-06 Score=70.67 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHhhcCcccE--------EEecc-----CCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINI--------LVISP-----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~--------~v~~~-----k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l 97 (512)
+.+++.|+++|++||.|.. +.|.. +.+|.|+|+|.+.++|..|+. +..-+...+|+|.|-
T Consensus 24 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 24 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 5899999999999999998 65532 347999999999999999996 344456788999874
No 312
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=3.6e-06 Score=71.29 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+...
T Consensus 33 ~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 33 DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 589999999999999999997743 3479999999999999999964333 4567899999876544
No 313
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.18 E-value=1.8e-06 Score=74.39 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
..|++.|+++|++||.|.+|-|.. +.+|.|+|+|.+.++|..|+..--| +...+|.|.|..+...
T Consensus 16 ~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 16 SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 589999999999999999986532 3368999999999999999964233 3456899999875533
No 314
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=3.7e-06 Score=70.39 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhh-cCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC---CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSK-YGKINILVISP----KKRGSALLEFEHADSARRAKLYELG---LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~k-yG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g---~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++ ||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +...||.|.|-.+....
T Consensus 20 ~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 20 DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 4899999999999 99999997743 4579999999999999999985444 55789999998765443
No 315
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.17 E-value=1.7e-06 Score=82.40 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~ 98 (512)
..+++.|+.+|++||+|..|.|...++|.|+|||.+.++|+.|++. ..-+...||.|.|-.
T Consensus 16 ~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 16 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 5899999999999999999988777789999999999999999974 333456788888754
No 316
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=2.7e-06 Score=70.58 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhhcCccc-EEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCC----cEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKIN-ILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCP----LTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~-~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nP----l~~~~l~~~ 100 (512)
..+++.|+++|++||.|. .|.|.. +.+|.|+|+|.+.++|+.|+..=.| +...+ |+|.|-.+.
T Consensus 20 ~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 20 YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 589999999999999999 886643 3469999999999999999973222 34556 999998765
No 317
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=4.8e-06 Score=69.14 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|...++..+.+|.|+|+|.+.++|..|+.. ..-+-..+|.|.|-.+.
T Consensus 30 ~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 30 DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred cCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5899999999999999974455567789999999999999999964 33345688999998765
No 318
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=3.1e-06 Score=73.12 Aligned_cols=63 Identities=8% Similarity=0.108 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD 488 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~ 488 (512)
-..|+++|+++|+.| .|.+|.|+.+ .+|+|||+|.+.++|.+|+.. +..+.+.+|.|..+.+.
T Consensus 26 ~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 26 FSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp SSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 368999999999999 8999999864 379999999999999999963 45566788999888654
No 319
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.16 E-value=3.6e-06 Score=75.44 Aligned_cols=66 Identities=14% Similarity=0.366 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccC-------CCceEEEEEcCHHHHHHHHHh--hcCCC---CCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPK-------KRGSALLEFEHADSARRAKLY--ELGLP---NCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~-------kkg~A~V~F~s~~~A~~Ai~~--~~~~~---~~pL~V~wa~~~~~ 490 (512)
..+|+++|+++|+.||.|.+|.|..+ .+|+|||+|.+.++|.+|+.. +..+. ..++.|.++.++..
T Consensus 13 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 13 RTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 46999999999999999999998753 368999999999999999963 33322 57899998875543
No 320
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.6e-06 Score=71.09 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~ 99 (512)
..+++.|+++|++||.|.+|.|. +.+|.|+|+|.+.++|+.|+..=.| +-..+|+|.|-.+
T Consensus 38 ~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 38 FATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred ccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 58999999999999999999776 5679999999999999999964333 3456788888543
No 321
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=4.7e-06 Score=69.27 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCCHHHHH----HHHhhcCcccEEEeccCC--CceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLT----KIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~----~~f~kyG~v~~~v~~~k~--~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+ ++|++||.|..|.|...+ +|.|+|+|.+.++|..|+..-.| +-..+|+|+|-.+...
T Consensus 20 ~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 20 RLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 58999999 999999999999875322 89999999999999999974333 3467899999876643
No 322
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.15 E-value=1.7e-06 Score=70.56 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.+ |..|+.. ..-+-..+|+|+|-.+....
T Consensus 12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 589999999999999999998753 45899999999999 9999974 33355789999998765443
No 323
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.15 E-value=4.6e-06 Score=71.21 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|..|+.. -.-+...+|.|.|-.+.
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 19 KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 58999999999999999999773 45589999999999999999974 33345678999998754
No 324
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.15 E-value=2.8e-06 Score=75.60 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+. +..-+...+|+|.|-.+...
T Consensus 58 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 58 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 589999999999999999998743 568999999999999999996 34445678999999876543
No 325
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.15 E-value=2.2e-06 Score=77.30 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..|++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|+.|+.. ..-+-..+|+|.|-.+...
T Consensus 50 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 50 YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 58999999999999999999774 34579999999999999999973 3334568899999986533
No 326
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=3.4e-06 Score=71.78 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHhhcCccc--------EEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKIN--------ILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~--------~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|. .|.|.. +.+|.|+|+|.+.++|..|+.. ..-+-..+|+|.|-.+...
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 26 SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 589999999999999998 565533 4479999999999999999973 3334568899999886654
Q ss_pred c
Q psy3926 103 R 103 (512)
Q Consensus 103 ~ 103 (512)
.
T Consensus 106 ~ 106 (113)
T 2cpe_A 106 M 106 (113)
T ss_dssp S
T ss_pred C
Confidence 4
No 327
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.14 E-value=1.7e-06 Score=69.57 Aligned_cols=44 Identities=32% Similarity=0.431 Sum_probs=39.5
Q ss_pred CHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh
Q psy3926 40 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~ 83 (512)
+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 7799999999999999998753 5589999999999999999964
No 328
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.14 E-value=2e-06 Score=74.49 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+.
T Consensus 47 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 47 GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 489999999999999999997743 4589999999999999999931 12234678999998754
No 329
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.2e-06 Score=71.95 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|... .+|.|+|+|.+.++|+.|+.. ..-+...+|.|.|-.+.
T Consensus 26 ~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 26 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 5899999999999999999977543 368999999999999999974 22345678999998644
No 330
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.14 E-value=1.7e-06 Score=72.72 Aligned_cols=62 Identities=24% Similarity=0.267 Sum_probs=50.9
Q ss_pred CCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCC-CCcEEeecCCC
Q psy3926 39 YTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPN-CPLTLNYLNPD 100 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~-nPl~~~~l~~~ 100 (512)
.+++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|..|+..=.| +.. .+|.|.|..|.
T Consensus 24 ~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 24 VLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 5789999999999999999764 34679999999999999999964333 344 79999998653
No 331
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=3.9e-06 Score=71.52 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCC----------CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGL----------PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~----------~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.|. ...||.|.|..|.
T Consensus 36 ~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 36 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 589999999999999999997643 34689999999999999999854443 4678999998765
No 332
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.12 E-value=1.7e-06 Score=74.20 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~ 96 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+..=.| +...+|+|+|
T Consensus 51 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 51 EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 589999999999999999997743 4489999999999999999974222 3356777776
No 333
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.12 E-value=2.7e-06 Score=66.84 Aligned_cols=58 Identities=12% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~ 96 (512)
..+++.|+++|++||.|.++.|.. +.+|.|+|+|.+.++|..|+.. .| +...+|.|.|
T Consensus 10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 589999999999999999997743 4589999999999999999964 33 2334555554
No 334
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.11 E-value=2.8e-06 Score=68.78 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~ 96 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. .| +-..+|.|.|
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 22 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 589999999999999999997642 3479999999999999999954 33 3334566655
No 335
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=5.8e-06 Score=70.41 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhcCccc----EEE-eccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKIN----ILV-ISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~----~~v-~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..|++.|+++|++||.|. .+. +..+.+|.|+|+|.+.++|..|+.. -.-+-..||.|.|-.+...+
T Consensus 36 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 36 RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 589999999999999994 443 3456789999999999999999974 33356789999998866443
No 336
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=2.6e-06 Score=72.73 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|.+|.|. .+.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+...+
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 36 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCccC
Confidence 58999999999999999999875 35679999999999999999931 22234678999998755443
No 337
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.10 E-value=2.5e-06 Score=73.44 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|..|+..=.| +...+|+|.|-...
T Consensus 17 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 17 NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 48999999999999999999663 35679999999999999999974333 45678999987644
No 338
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.10 E-value=3.6e-06 Score=71.49 Aligned_cols=59 Identities=29% Similarity=0.474 Sum_probs=50.9
Q ss_pred CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
.+++.|+++|++||.|..|.| .+|.|+|+|.+.++|..|+..-.| +-..+|+|.|-.++
T Consensus 40 ~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 40 VKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 799999999999999999999 579999999999999999964333 34678999998744
No 339
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=5.4e-06 Score=70.97 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. .| +...+|.|.|-.+....
T Consensus 38 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 38 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence 589999999999999999997643 3479999999999999999965 33 34578999998766443
No 340
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.09 E-value=3.9e-06 Score=81.97 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=60.6
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
..++|-|. +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|..|+. ++..+.+.+|.|.|+.
T Consensus 21 ~~~~l~V~-----nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 21 QRCRLFVG-----NLPTDITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GGGEEEEE-----SCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEE-----CCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 44567764 22236999999999999999999998654 7999999999999999997 4666778899999986
Q ss_pred C
Q psy3926 487 P 487 (512)
Q Consensus 487 ~ 487 (512)
+
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 4
No 341
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.09 E-value=3.5e-06 Score=70.87 Aligned_cols=61 Identities=16% Similarity=0.348 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~ 98 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|..
T Consensus 40 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 40 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 589999999999999999987643 4478999999999999999973 333455789988853
No 342
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=6.9e-06 Score=70.30 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC-CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG-LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g-~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+.
T Consensus 28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 28 HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 96 (116)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence 589999999999999999997754 4579999999999999999964323 33568999998654
No 343
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=6e-06 Score=70.76 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCcccEEEec-cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 41 RESLTKIFSKYGKINILVIS-PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
++.|+++|++||.|..|+|. ...+|.|+|+|.+.++|..|+..-.|. -..||+|.|..|.
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 68999999999999999874 346899999999999999999754443 4678999998764
No 344
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.09 E-value=6.2e-06 Score=74.16 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|..|.|. .+.+|.|+|+|.+.++|+.|+.. ..-+...||.|.|-.+...
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 58999999999999999999774 35689999999999999999963 3335568999999886533
No 345
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.08 E-value=3.8e-06 Score=68.89 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHhhcC--cccEEEecc-----CCCceEEEEeccHHHHHHHHHhhh--CCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYG--KINILVISP-----KKRGSALLEFEHADSARRAKLYEL--GLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG--~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~--g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++|| .|..+.|.. +.+|.|+|+|.+.++|+.|+..=. -+...+|+|.|-.|+..
T Consensus 12 ~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 12 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 479999999999999 999986532 457999999999999999996433 35567899999886644
No 346
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=3.4e-06 Score=70.84 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.. .| +...+|+|.|-.+....
T Consensus 27 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 27 STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 589999999999999999997744 3468999999999999999975 44 34567999998766443
No 347
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=2.5e-06 Score=68.79 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG 86 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g 86 (512)
..+++.|+++|++||.|..+.|.. +.+|.|+|+|.+.++|..|+..=.|
T Consensus 16 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 16 GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 589999999999999999997643 3479999999999999999974333
No 348
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=6.3e-06 Score=68.57 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHhhc--CcccEEEeccCCCceEEEEeccHHHHHHHHHhhh--CCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKY--GKINILVISPKKRGSALLEFEHADSARRAKLYEL--GLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~ky--G~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~--g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++| |.|..|.+. +|.|+|+|.+.++|..|+..-. -+...+|+|.|-.+...
T Consensus 26 ~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 26 STSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp TCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred CCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 58999999999999 999998775 6899999999999999997322 23467899999886644
No 349
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.05 E-value=6.3e-06 Score=66.74 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+ .-.| +...+|+|.|-.+.
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 17 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 589999999999999999997643 44899999999999999999 4333 34567899887543
No 350
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.05 E-value=5.7e-06 Score=70.65 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh-hCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e-~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+..- .-+-..+|.|.|-.+.
T Consensus 36 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 36 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence 589999999999999999997743 45799999999999999999631 1223468899988755
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.05 E-value=2e-06 Score=76.45 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=57.1
Q ss_pred CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCee--EEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCceE
Q psy3926 409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKIN--ILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPLT 481 (512)
Q Consensus 409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~--~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~ 481 (512)
..++|.|. +.+-..|+++|+++|+.|| |. +|.|+.++ +|+|||+|.+.++|.+||.. +..+.+.+|.
T Consensus 41 ~~~~lfVg-----nLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLR-----GLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp SCCEEEEE-----CCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCEEEEe-----CCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 34566664 2224699999999999995 65 88887643 79999999999999999974 4556678899
Q ss_pred EEecCCC
Q psy3926 482 LNYLNPD 488 (512)
Q Consensus 482 V~wa~~~ 488 (512)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 352
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.05 E-value=9.2e-06 Score=75.72 Aligned_cols=66 Identities=15% Similarity=0.340 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~~ 103 (512)
+.+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+. +..-+-..||+|.|..+....
T Consensus 99 ~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~ 170 (177)
T 2f3j_A 99 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 170 (177)
T ss_dssp CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGG
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 589999999999999999998753 457999999999999999998 344456789999998765443
No 353
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=6.1e-06 Score=70.08 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCC-----CCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPN-----CPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~-----nPl~~~~l~~~ 100 (512)
..+++.|+++|++||+|..|.|... |.|+|||.+.++|..|+..-.| +.. .+|+|.|-.+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 26 SGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp SCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred CCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 5899999999999999999987655 9999999999999999974333 222 68999998765
No 354
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=3e-06 Score=72.45 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=52.6
Q ss_pred CCCHHHHH---HHHhhcCcccEEEecc--------CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLT---KIFSKYGKINILVISP--------KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~---~~f~kyG~v~~~v~~~--------k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~ 101 (512)
..+++.|+ ++|++||.|..|.|.. +.+|.|+|+|.+.++|+.|+.. -.-+-..+|+|.|-.+..
T Consensus 26 ~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 26 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 47899999 9999999999997753 3348999999999999999974 222456789999987664
No 355
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.01 E-value=5.6e-06 Score=85.51 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=50.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC---CCCC--ceEEEecCC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG---LPNC--PLTLNYLNP 487 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~---~~~~--pL~V~wa~~ 487 (512)
.+||++|+++|++||.|.+|.|.. .||+|||+|.+.++|.+||.. +.. ..+. +|-|.|+..
T Consensus 31 ~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 31 GVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 589999999999999999998876 579999999999999999974 322 2223 788888853
No 356
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.00 E-value=3.2e-06 Score=69.71 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||+|..+....+.+|.|+|+|.+.++|..|+.. ..-+...+|.|.|-.+..
T Consensus 27 ~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 27 NITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp SCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 5899999999999999987734456689999999999999999973 223456789999987653
No 357
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.00 E-value=6.4e-06 Score=75.29 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccC-----CCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-----~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~ 101 (512)
..+++.|+.+|++||.|..|.|... .+|.|+|+|.+.++|..|+..-.| +...||.|.|-.+..
T Consensus 83 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 83 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 5899999999999999999987543 379999999999999999974333 456889999987543
No 358
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.97 E-value=6.2e-06 Score=69.05 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc------CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++|| |..|.|.. +.+|.|+|+|.+.++|..|+ .-.| +-..+|.|.|-.+.
T Consensus 30 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 30 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 489999999999999 99998744 34899999999999999999 3222 33567888887654
No 359
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.96 E-value=1.2e-05 Score=69.76 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHhhcC-cccEEEec-cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYG-KINILVIS-PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG-~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~ 99 (512)
..+++.|+++|++|| .|..+.|. .+.+|.|+|||.+.++|+.|+..=.| +-..+|.|.|-.+
T Consensus 39 ~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 39 GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 589999999999999 99999774 56789999999999999999964222 3456899998763
No 360
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.96 E-value=1e-05 Score=68.09 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l 97 (512)
.-|++.|+++|++||+|.++.|-. .+|-|+|||.+.+.|+.|++. -+=+-..||.+.+-
T Consensus 18 ~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 578999999999999999997754 589999999999999999974 33344567777765
No 361
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=5.4e-06 Score=69.13 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEe--ccCCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVI--SPKKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~--~~k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++||.|. |+. ..+.+|.|+|+|.+.++|..|+..- .-+...+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 26 SATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp TCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred CCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 489999999999999993 332 2356899999999999999999732 2245689999998866443
No 362
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.95 E-value=1e-05 Score=69.80 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~ 98 (512)
..+++.|+++|++||+|..|.|... |.|+|||.+.++|+.|+..=.| +-..+|++.|+.
T Consensus 27 ~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 27 SGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp SCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4789999999999999999988655 9999999999999999975333 345676665554
No 363
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.94 E-value=7.1e-06 Score=69.10 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHhhcCc--ccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC------CCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGK--INILVIS-----PKKRGSALLEFEHADSARRAKLYELGL------PNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~--v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~------~~nPl~~~~l 97 (512)
..|+|.|+++|++||. |.+|.|. .+.||-|.|+|.+.++|..|++.=.|. -..||.|+|-
T Consensus 20 ~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 20 HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp TCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred cCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 5799999999999995 6788653 356899999999999999999865553 2457777774
No 364
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.92 E-value=1.5e-05 Score=71.47 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHhhcc----C-------CeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCcc
Q psy3926 425 DVYTRESLTKIFSKY----G-------KINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVE 490 (512)
Q Consensus 425 ~~~te~~L~~iFs~f----G-------~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~ 490 (512)
..+|+++|+++|+.| | .|.++.+..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+..+
T Consensus 14 ~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 14 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-TTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC
T ss_pred cccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-CCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC
Confidence 369999999999999 6 7777777544 8999999999999999994 25566788999999876543
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.91 E-value=1.3e-05 Score=68.70 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=49.8
Q ss_pred CHHHHHHHHhhcCcccEEEecc------CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926 40 TRESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP 99 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~ 99 (512)
+++.|++.|++||.|.+|.|.. +.+|.|.|+|.+.++|..|+..=.| ....+|.+.|..+
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 6899999999999999998753 4589999999999999999975444 3456788888753
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.91 E-value=1.2e-05 Score=72.32 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcC----H-HH---HHHHHH----hhcCCCCCceEEEecC
Q psy3926 425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEH----A-DS---ARRAKL----YELGLPNCPLTLNYLN 486 (512)
Q Consensus 425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s----~-~~---A~~Ai~----~~~~~~~~pL~V~wa~ 486 (512)
-.++++.|+++|+.||.|.++.+..|+ +|+|||+|.+ . ++ |.+||. +++.+.+.+|.|..-+
T Consensus 16 ~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 16 TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 368999999999999999999998764 8999999996 2 22 888887 5677788999998654
No 367
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.91 E-value=5.1e-06 Score=75.10 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=60.3
Q ss_pred CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEc----cCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926 408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKL-YELGLPNCPLTL 482 (512)
Q Consensus 408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~----~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V 482 (512)
...++|-|.= .+..+|+++|+++|+.||.|..+.|. ...+|+|||+|.+.++|.+|++ ++..+.+.+|.|
T Consensus 11 ~~~~~l~V~n-----Lp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGN-----LNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEEC-----CCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence 3455666652 22369999999999999988763333 2358999999999999999996 356677899999
Q ss_pred EecCCCccc
Q psy3926 483 NYLNPDVER 491 (512)
Q Consensus 483 ~wa~~~~~r 491 (512)
.|+.++...
T Consensus 86 ~~~~~~~~~ 94 (175)
T 1fje_B 86 EKPKGRDSK 94 (175)
T ss_dssp ECCCCSSCS
T ss_pred ecCCCcccc
Confidence 999876543
No 368
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=70.08 Aligned_cols=59 Identities=29% Similarity=0.305 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY 96 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~ 96 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+..-.| +...+|+|.|
T Consensus 74 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 74 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 589999999999999999998743 4589999999999999999964222 3356788876
No 369
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.90 E-value=3.1e-06 Score=70.69 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.|..|.|.. +.+|.|+|+|.+.++|..|+.+...+-..+|.|.|-.+..
T Consensus 20 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCc
Confidence 589999999999999999997643 4579999999999999999973333445688888876443
No 370
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.8e-05 Score=66.33 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEec------cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS------PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~------~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++|| |..|.|. .+.+|.|+|+|.+.++|..|+ .-.| +-..+|.|.|-.+....
T Consensus 26 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 26 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 489999999999999 9999774 344899999999999999999 4333 34568999998766443
No 371
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=2.8e-05 Score=64.08 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..|++.......|+|+|.+.++|..|+. -.|. -..+|.|.|-.+.
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 19 GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 589999999999999999986543322289999999999999996 3332 3457888776543
No 372
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.86 E-value=1.3e-05 Score=73.56 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCC-----CceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~-----~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.|..|.|...+ +|.|+|+|.+.++|..|+..=.| +...+|.|.|-.|..
T Consensus 125 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 125 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 57999999999999999999875443 79999999999999999974233 346789999987663
No 373
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.85 E-value=2.2e-05 Score=67.20 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=49.1
Q ss_pred CHHHHHHHHhhcCcccEEEecc-------CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926 40 TRESLTKIFSKYGKINILVISP-------KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP 99 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~-------k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~ 99 (512)
.++.|++.|+|||.|.+|.|.. +.+|.|.|+|.+.++|..|+..=.|. ...+|+++|..+
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 3579999999999999998853 35799999999999999999764443 356888888753
No 374
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.85 E-value=6.2e-06 Score=67.73 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL 97 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l 97 (512)
..+++.|+++|++||.|..+.|.. +.+|.|+|+|.+.++|..|+..-.| +-..+|.|++-
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 589999999999999998665432 4579999999999999999974233 34566777753
No 375
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.83 E-value=2e-05 Score=67.31 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHHHHH-hhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeec
Q psy3926 42 ESLTKIF-SKYGKINILVISPK----KRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYL 97 (512)
Q Consensus 42 ~~l~~~f-~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l 97 (512)
+.|++.| ++||.|.+|.|... .+|.|.|+|.+.++|..|+..=.|. -..||+|.|.
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3444555 99999999988653 4899999999999999999765553 4557777764
No 376
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.83 E-value=1.3e-05 Score=75.73 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEec----cCCCceEEEEeccHHHHHHHHHhhhC-CCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKLYELG-LPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g-~~~nPl~~~~l~ 98 (512)
..+++.|+++|++||.|..|.|. .+.+|.|+|||.+.++|..|+....+ +-..||.|.|-.
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 48999999999999999999775 34579999999999999999964322 234678888754
No 377
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=9.5e-06 Score=67.13 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|..+++. .+.+|.|+|+|.+.++|+.|+..=.| +-..+|+|.|-.++
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 58999999999999999865432 13479999999999999999964332 34678999997644
No 378
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.80 E-value=3.6e-05 Score=67.56 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHhhcCcccE--EEec-----cCCCceEEEEeccHHHHHHHHHhhhCC------CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINI--LVIS-----PKKRGSALLEFEHADSARRAKLYELGL------PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~--~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~------~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++||.|.. |.|. .+.+|.|+|+|.+. +|..|+..=.|. ...+|.|.|-.+.
T Consensus 34 ~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 34 HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 4799999999999999954 6543 35589999999999 999998754443 4568899988765
No 379
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.79 E-value=3.6e-05 Score=67.10 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=49.8
Q ss_pred CHHHHHHHHhhcCcccEEEeccC-CCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926 40 TRESLTKIFSKYGKINILVISPK-KRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP 99 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~k-~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~ 99 (512)
-++.|++.|+|||.|.+|+|... .+|.|.|+|.+.++|..|+..=.| ....+|+++|..+
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 35789999999999999988653 489999999999999999975444 3467899999863
No 380
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.78 E-value=2.2e-05 Score=65.38 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEe----ccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKINILVI----SPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~----~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.|...+| ..+.+|.|+|+|.+.++|..|+. -.| +...+|+|.|-.+..
T Consensus 28 ~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 28 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred CCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 5899999999999999998433 23668999999999999999997 333 236789999987653
No 381
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.77 E-value=4e-05 Score=64.10 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++|| |.+|.|.. +.+|.|+|+|.+.++|..|+ .-.| +...+|+|.|-.+....
T Consensus 26 ~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 26 NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 589999999999998 99997643 34799999999999999999 3222 23568999998766443
No 382
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.95 E-value=3.7e-06 Score=72.09 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhhcCcccE--------EEec-----cCCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINI--------LVIS-----PKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~--------~v~~-----~k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~ 102 (512)
..+++.|+++|++||.|.. |.|. .+.+|.|+|+|.+.++|..|+. +..-+...+|.|.|-.+...
T Consensus 18 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 18 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 4789999999999999988 5443 2457999999999999999997 34445578999999886654
Q ss_pred c
Q psy3926 103 R 103 (512)
Q Consensus 103 ~ 103 (512)
.
T Consensus 98 ~ 98 (116)
T 2lcw_A 98 F 98 (116)
Confidence 4
No 383
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=0.00012 Score=61.70 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCCcceeEEEeecCCCCCCCCCH---HHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926 407 NPENYRLRIRWKSSSTDTDVYTR---ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTL 482 (512)
Q Consensus 407 ~~~~~~lkVKWk~~~~~~~~~te---~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V 482 (512)
.+.+-||.|.-....+...-+++ ..|...|+.||.|..|.|..++ +||+|.+.++|.+||. ++....+..|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 45667888877654221123453 5577889999999999998764 9999999999999997 466677889999
Q ss_pred EecCCC
Q psy3926 483 NYLNPD 488 (512)
Q Consensus 483 ~wa~~~ 488 (512)
+.+.+.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 988753
No 384
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.74 E-value=2.6e-05 Score=71.31 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHhhcC--cccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYG--KINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG--~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++|| .|..|.|. .+.+|-|+|+|.+.++|+.|+.. ..-+-..+|.|.|-.+.
T Consensus 66 ~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 66 WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 589999999999999 99999663 34579999999999999999975 23344678999988654
No 385
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.74 E-value=3.6e-05 Score=75.67 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=49.0
Q ss_pred CHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--------------CCCCcEEeecCCC
Q psy3926 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--------------PNCPLTLNYLNPD 100 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--------------~~nPl~~~~l~~~ 100 (512)
+++.|+++|++||+|..|.|.. .+|.|+|+|.+.++|+.|+..=.|. ...+|.|.|-.+.
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred cHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 6999999999999999997654 4799999999999999998753332 2458999998754
No 386
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=4.7e-05 Score=64.16 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHhhcCcccE-EEec----cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINI-LVIS----PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~-~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
.-+++.|+++|++||.|.+ |.|. .+.+|.|+|||.+.++|..|+.. .|. -..+|.|.+-.+.
T Consensus 26 ~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 26 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 4799999999999999987 6553 35679999999999999999975 442 2456788776543
No 387
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.72 E-value=1.9e-05 Score=67.66 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHhhcCcc-cEEEec----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926 38 VYTRESLTKIFSKYGKI-NILVIS----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v-~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~ 101 (512)
..+++.|+++|++||.| ..|.|. .+.+|.|+|+|.+.++|..|+.. .| +-..+|.|.|..+..
T Consensus 26 ~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 26 SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 47999999999999999 667553 35689999999999999999865 43 235689999987554
No 388
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.66 E-value=3.1e-05 Score=63.11 Aligned_cols=60 Identities=8% Similarity=0.163 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~ 99 (512)
..+++.|+++|++| .|..+.|. +.+|.|+|+|.+.++|+.|+..-.| +...+|+|.|-..
T Consensus 16 ~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 16 DSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp SCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 58999999999999 99999774 6789999999999999999974333 3467899998643
No 389
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.66 E-value=3.8e-05 Score=74.39 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHhhcC--cccEEEec-----cCCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYG--KINILVIS-----PKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG--~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~ 100 (512)
..|++.|+++|++|| .|..|.|. .+.||.|+|+|.+.++|..|+. +..-+-..+|+|.|-.+.
T Consensus 79 ~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 79 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 589999999999999 99999763 2467999999999999999996 334455679999998654
No 390
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.65 E-value=3.9e-05 Score=68.09 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHhhcCcccE--------EEe--ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINI--------LVI--SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~--------~v~--~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~ 100 (512)
..|++.|+++|++||.|.. |.+ ..+.+|.|+|+|.+.++|..|+.. -.-+...||.|.|-.+.
T Consensus 56 ~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 56 HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred CCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 5899999999999999976 332 347789999999999999999974 23344678999998654
No 391
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=3.7e-05 Score=65.91 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHhhcCcccEEEec--------cCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEe
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS--------PKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN 95 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~--------~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~ 95 (512)
..+++.|+++|++||.|. +++. .+.+|.|+|||.+.++|..|+..-.++-...|.+.
T Consensus 19 ~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 19 DIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp TCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 589999999999999999 5442 25589999999999999999975434333444444
No 392
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=6e-05 Score=62.68 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHhhcCcccEEEe--ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926 38 VYTRESLTKIFSKYGKINILVI--SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER 103 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~--~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~ 103 (512)
..+++.|+++|++|+.|.-+.- ..+.+|.|+|+|.+.++|..|+.. ..-+-..+|+|.|-.+...+
T Consensus 26 ~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 26 DTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp TCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred ccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 5899999999999986654332 234579999999999999999974 33345678999998876544
No 393
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.52 E-value=0.00013 Score=69.25 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=52.9
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccC---------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPK---------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN 486 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~---------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~ 486 (512)
...+++|++.|++||.|.+|.|+.+ .+|++||+|.+.++|.+||. ++..+.+.+|.|.|+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4567899999999999999999732 36999999999999999997 4777888999999974
No 394
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=4.9e-05 Score=66.00 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHhhcCcccE-EEec----cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINI-LVIS----PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~-~v~~----~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~ 100 (512)
..|++.|+++|++||.|.+ ++|. .+.+|.|+|+|.+.++|..|+.. -.-+-..+|.|.|..+.
T Consensus 36 ~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 36 EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 4899999999999999987 3332 24579999999999999999962 11234568999998654
No 395
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.51 E-value=0.0001 Score=78.15 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926 38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE 102 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~ 102 (512)
..|++.|..+|++||.|..|.|. .+.+|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+...
T Consensus 113 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 113 DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 58999999999999999999663 34689999999999999999964233 3467899999876533
No 396
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.49 E-value=0.0001 Score=64.53 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=47.6
Q ss_pred CHHHHHHHHhhcCcccEEEeccC---------CCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecC
Q psy3926 40 TRESLTKIFSKYGKINILVISPK---------KRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLN 98 (512)
Q Consensus 40 ~~~~l~~~f~kyG~v~~~v~~~k---------~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~ 98 (512)
-++.|++.|+|||.|.+|+|... .+|.|.|+|.+.++|..|+..=.|. ...+|++++..
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 47899999999999999987542 2489999999999999999764443 35678888764
No 397
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=0.00014 Score=61.90 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCHHH----HHHHHhhc-CcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926 39 YTRES----LTKIFSKY-GKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV 101 (512)
Q Consensus 39 Y~~~~----l~~~f~ky-G~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~ 101 (512)
-+++. |+++|++| |.|.+|+- |.|+|+|.+.++|..|++.--| +...|++|++-.+..
T Consensus 21 ~~~~~lk~~L~~lF~~yGG~Vl~Vtg-----G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 21 KDGKSVSNRLRRLSDNCGGKVLSITG-----CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp SCHHHHHHHHHHHHHTTTCCEEECCT-----TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEec-----CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 35555 77999999 59999942 9999999999999999975444 567899999876553
No 398
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.41 E-value=0.00016 Score=74.56 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC-----CCC--CcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL-----PNC--PLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~-----~~n--Pl~~~~l~ 98 (512)
+-|++.|+++|++||+|..|+|-. .||-|+|||.+.++|..|+..=.|. ... ||-+..++
T Consensus 31 ~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 31 GVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 589999999999999999998865 5799999999999999999864432 123 77777774
No 399
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00025 Score=57.71 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..+++.|+++|++| .|..|.|.. +.+|.|+|+|.+.++|..|+. -.| +-..+|.|.|-.+.
T Consensus 21 ~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 21 NVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred CCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 47999999999999 999996632 447899999999999999997 333 23468999987765
No 400
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00018 Score=60.75 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~ 100 (512)
.-|++.|+++|++||.| .|.|.. +.+|.|+|||.+.++|+.|+.. .|. -..+|.|.+-.+.
T Consensus 26 ~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 26 RATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAK-DKANMQHRYVELFLNSTA 92 (102)
T ss_dssp TCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTT-SSCCSSSSCCEEEEECCC
T ss_pred CCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeECCcEEEEEECCCC
Confidence 47999999999999955 775532 4578999999999999999953 332 2457888765543
No 401
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.32 E-value=0.00035 Score=56.00 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHhhc----C-------cccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEe
Q psy3926 38 VYTRESLTKIFSKY----G-------KINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLN 95 (512)
Q Consensus 38 ~Y~~~~l~~~f~ky----G-------~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~ 95 (512)
..+++.|+++|++| | .|.++.|... +|.|+|||.+.++|..|+ .-.|. -..+|+|+
T Consensus 17 ~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 17 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 58999999999999 8 8999877644 799999999999999998 43332 23445554
No 402
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.31 E-value=0.00018 Score=60.80 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHhhcCc---ccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926 38 VYTRESLTKIFSKYGK---INILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP 99 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~---v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~ 99 (512)
.-|++.|+++|+.||. |..|.|.. +.+|.|+|+|.+.++|..|+.. .| +-..+|.|.|-.+
T Consensus 22 ~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 22 SCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINN 91 (107)
T ss_dssp SCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTT-TTCCSSSSCCCCEECCH
T ss_pred CCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CcceeCCeEEEEEECCH
Confidence 4789999999999998 88887643 4578999999999999999963 22 2235788887654
No 403
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.21 E-value=0.00054 Score=60.61 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=52.5
Q ss_pred CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcC-HHHHHHHHHh----hcCCCCCceEEEecCCCccc
Q psy3926 427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEH-ADSARRAKLY----ELGLPNCPLTLNYLNPDVER 491 (512)
Q Consensus 427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s-~~~A~~Ai~~----~~~~~~~pL~V~wa~~~~~r 491 (512)
.++++|+++|+.||.|..|.+..+.. +|||.|.+ ..+|..|+.. +..+.+..+++.-+.++.+.
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~GeeE~ 99 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEK 99 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHHHH
Confidence 89999999999999999999987644 89999999 8899988874 34455677888877766544
No 404
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.20 E-value=0.00019 Score=64.27 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHhhcCc---ccEEEecc----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGK---INILVISP----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~---v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~ 98 (512)
..|++.|+++|++||. |.+|.|.. +.+|.|+|||.+.++|+.|+.. -.-+-..+|.|.|-.
T Consensus 55 ~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 55 SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 4799999999999999 78876643 4578999999999999999962 112234578887754
No 405
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.19 E-value=0.00026 Score=60.16 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=58.2
Q ss_pred CCCCcceeEEEeecCCCCC-CCCCH---HHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926 406 LNPENYRLRIRWKSSSTDT-DVYTR---ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPL 480 (512)
Q Consensus 406 ~~~~~~~lkVKWk~~~~~~-~~~te---~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL 480 (512)
..+.+-||.|.-.....+. .-+++ ..|.+.|+.||.|..|.|..++ +||+|.+.++|.+||. ++....+..|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 3556778888765321011 12443 4577889999999999998774 9999999999999997 4677788899
Q ss_pred EEEecC
Q psy3926 481 TLNYLN 486 (512)
Q Consensus 481 ~V~wa~ 486 (512)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998764
No 406
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.17 E-value=0.0002 Score=63.08 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHhhcCcc----cEEEec----cCCCceEEEEeccHHHHHHHHHh
Q psy3926 38 VYTRESLTKIFSKYGKI----NILVIS----PKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v----~~~v~~----~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
.-|++.|+++|++||.| .+|.|. .+.+|.|+|||.+.++|..|+..
T Consensus 34 ~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 34 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 47999999999999986 566553 24579999999999999999964
No 407
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.16 E-value=0.00021 Score=61.78 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHhhcCc---ccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGK---INILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~---v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~ 98 (512)
.-|++.|+++|++||. |..|.|.. +.+|.|+|||.+.++|+.|+.. .| +-..+|.|.|-.
T Consensus 28 ~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~-~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 28 SCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKK-DRESMGHRYIEVFKSH 96 (118)
T ss_dssp TCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGG-TTEEETTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhc-CCCeECCeEEEEEECC
Confidence 4799999999999999 88886642 4478999999999999999963 22 224578888765
No 408
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.13 E-value=0.00027 Score=63.57 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~ 100 (512)
..|++.|+++|++|| |++|.|.. +.+|.|+|||.+.++|+.|+.. .| +-..+|.|.+-.+.
T Consensus 57 ~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~-~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 57 KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK-DRANMQHRYIELFLNSTT 123 (139)
T ss_dssp TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTC-CSCSSSSCCCCCEECCCS
T ss_pred CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhh-CCCEECCEEEEEEECCCC
Confidence 479999999999999 77887643 4579999999999999999932 22 22346777665543
No 409
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00088 Score=57.59 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~ 98 (512)
.-+++.|+++|+.| .|.+|.|.. +.+|.|+|+|.+.++|+.|+.. .| +-..+|.|.+-.
T Consensus 27 ~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 27 SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR-NRMLMIQRYVEVSPAT 91 (109)
T ss_dssp SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHT-TTEEETTEEEEEEECC
T ss_pred CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhc-CCCeECCeEEEEEECC
Confidence 47999999999999 899997743 4589999999999999999953 11 123466776554
No 410
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00093 Score=60.14 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEecc-----HHH---HHHHHH----hhhCCCCCCcEEe
Q psy3926 37 DVYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEH-----ADS---ARRAKL----YELGLPNCPLTLN 95 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~-----~~a---a~~a~~----~e~g~~~nPl~~~ 95 (512)
-.-+++.|+.+|+.||+|..+.+ ....+|-++|||.+ .+| |..|+. +.+-+...+|.|.
T Consensus 16 ~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 16 TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVI 91 (136)
T ss_dssp CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEE
Confidence 35799999999999999999965 23668999999995 333 777775 2233345566665
No 411
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.67 E-value=0.0015 Score=57.88 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHhhcCccc--EEEecc----CCCceEEEEeccHHHHHHHHHh
Q psy3926 38 VYTRESLTKIFSKYGKIN--ILVISP----KKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~--~~v~~~----k~~g~A~vef~~~~aa~~a~~~ 83 (512)
.-|++.|+++|++| .|+ +|.|.. +.+|.|+|||.+.++|+.|+..
T Consensus 53 ~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 53 GCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp TCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 47999999999999 566 776643 4579999999999999999963
No 412
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.38 E-value=0.0034 Score=59.40 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHhhcCcccEEEec----c-----CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEeec
Q psy3926 37 DVYTRESLTKIFSKYGKINILVIS----P-----KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNYL 97 (512)
Q Consensus 37 ~~Y~~~~l~~~f~kyG~v~~~v~~----~-----k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~l 97 (512)
....++.|++.|++||+|..|.|. . ..+|.+.|||.+.++|..|+..-.|.. ..||.+++.
T Consensus 139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 357789999999999999999885 2 557999999999999999999877762 345655554
No 413
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.0048 Score=54.52 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEecc-HHHHHHHHHhh--hC--CCCCCcEEeecCCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEH-ADSARRAKLYE--LG--LPNCPLTLNYLNPD 100 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~-~~aa~~a~~~e--~g--~~~nPl~~~~l~~~ 100 (512)
+-|.+.|+.+|++||+|..|.+.... -.|.|+|.+ ..+|..|+..- -| +-...++++-|+++
T Consensus 30 ~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Ge 96 (121)
T 1owx_A 30 QTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGE 96 (121)
T ss_dssp SCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHH
T ss_pred cCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCH
Confidence 37899999999999999999876543 379999999 77787777641 11 11234666656543
No 414
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.27 E-value=0.031 Score=59.79 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=41.7
Q ss_pred cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH
Q psy3926 410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL 470 (512)
Q Consensus 410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~ 470 (512)
.++|.|.- .. ..++..|.++|++||+|.++.+-+++.-+|+|+|.+.+++.+++.
T Consensus 53 ~rsv~v~~--~~----~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIHC--PE----KISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEEE--CC----C---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEEc--CC----CCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 34888873 22 389999999999999999999999888999999999999987763
No 415
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.19 E-value=0.047 Score=46.26 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCC
Q psy3926 42 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP 99 (512)
Q Consensus 42 ~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~ 99 (512)
..|.+.|+.||+|..+-|-.- .+.|+|.+.++|..|+.. -.-.....|+|.+.+|
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLDVDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHHGGGSEETTEEEEEECCCC
T ss_pred HHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHhcCCeeeCCeEEEEeccCC
Confidence 458899999999998855443 399999999999999972 1112234677776553
No 416
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.93 E-value=0.053 Score=45.61 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926 42 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP 99 (512)
Q Consensus 42 ~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~ 99 (512)
..|...|+.||+|..+-|-. +.+.|+|.+.++|..|+. =-|. ....|+|..-.|
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 56889999999999886544 349999999999999986 2222 223577765554
No 417
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.084 Score=46.06 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHhhcc-----CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926 425 DVYTRESLTKIFSKY-----GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLN 483 (512)
Q Consensus 425 ~~~te~~L~~iFs~f-----G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~ 483 (512)
+.+++..++.+...| |.|..|++..+ .|-|+|+|++...|-+|.- ++..+.+..|.|.
T Consensus 31 DtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 31 DKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 469999999999999 99999998776 7889999999999988864 4566667777764
No 418
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.45 E-value=0.05 Score=58.13 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL 87 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~ 87 (512)
.-++..|.++|++||+|.++++-+.+.--|||||++.+++..+. .+.+.
T Consensus 63 ~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~-~~~~~ 111 (464)
T 3pq1_A 63 KISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ-NGTHT 111 (464)
T ss_dssp C---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH-SSCCC
T ss_pred CCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH-hccCC
Confidence 37899999999999999999998776678999999999988544 55443
No 419
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.43 E-value=0.94 Score=38.87 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHhhc-c----CCeeEEEEccCCCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926 425 DVYTRESLTKIFSK-Y----GKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 425 ~~~te~~L~~iFs~-f----G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~ 487 (512)
...+++.|.-+|.+ - |.|++|.... +.|+|+|.+.+.|++.++. ...+.+.+|.|.-.-+
T Consensus 18 p~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 18 PAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPP 83 (104)
T ss_dssp TTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCC
T ss_pred CCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCC
Confidence 36789999999977 2 6999998765 8999999999999999987 7778889999965433
No 420
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.31 Score=42.50 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHhhc-----CcccEEEeccCCCceEEEEeccHHHHHHHH
Q psy3926 38 VYTRESLTKIFSKY-----GKINILVISPKKRGSALLEFEHADSARRAK 81 (512)
Q Consensus 38 ~Y~~~~l~~~f~ky-----G~v~~~v~~~k~~g~A~vef~~~~aa~~a~ 81 (512)
--|.+.++.+...| |++..|++-+. -|.|||||++..+|--|.
T Consensus 32 tvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 32 KVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKML 79 (117)
T ss_dssp TCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHH
Confidence 48999999999999 99999998776 478999999998877665
No 421
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=86.23 E-value=1.4 Score=38.70 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=43.9
Q ss_pred CHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCC--CceEEEecC
Q psy3926 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPN--CPLTLNYLN 486 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~--~pL~V~wa~ 486 (512)
.-+.+-..|++||.|.+... ....+.-.|.|.+..+|.+|+..+-...+ ..+-|.+..
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred HHHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 35677788999999998887 34568999999999999999975433333 456677654
No 422
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.62 E-value=4.9 Score=34.41 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHhh-c----CcccEEEeccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926 38 VYTRESLTKIFSK-Y----GKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN 98 (512)
Q Consensus 38 ~Y~~~~l~~~f~k-y----G~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~ 98 (512)
+-++|.|.=+|++ - |.|.+|..-. ++|||+|.+.++|+..++. +-=+-..||+|...-
T Consensus 19 ~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 19 AVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp TSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred CCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 5789999999999 2 7888887644 8999999999999999988 777777889987643
No 423
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=81.84 E-value=2.2 Score=36.28 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
.+--.+|..+|+.||.|.==.|- --+|+|+|.+.+.|..|+..
T Consensus 26 ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 26 EWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp TCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHH
T ss_pred hhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHh
Confidence 47889999999999966322232 35999999999999999864
No 424
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=81.26 E-value=0.79 Score=39.11 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh
Q psy3926 39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 83 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~ 83 (512)
.-..+|.++|+.|| .|.|+=-.-.+|+|.|.+.+.|..|+..
T Consensus 17 wKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 17 WKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp CCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 45578999999999 5666655567999999999999998853
No 425
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=80.76 E-value=0.83 Score=38.89 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecC
Q psy3926 39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLN 98 (512)
Q Consensus 39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~ 98 (512)
.-..+|.++|+.||.|. |+=-.-.+|+|.|.+.+.|..|+..=. -+...+|.=+.
T Consensus 27 wKt~DI~~lFs~fggv~---I~WidDTsAlvvf~~~~~a~~al~~i~--k~~~y~i~ty~ 81 (100)
T 1whv_A 27 WKTSDLYQLFSAFGNIQ---ISWIDDTSAFVSLSQPEQVQIAVNTSK--YAESYRIQTYA 81 (100)
T ss_dssp CCHHHHHHHHTTTCSCC---CEEEETTEEEEECSCHHHHHHHHHHHH--HCCSSEEEEHH
T ss_pred hhhHHHHHHhhccCCEE---EEEEcCCeEEEEecCHHHHHHHHHhcc--cCCceEEEEhH
Confidence 56689999999999554 443345699999999999998885311 12236665443
No 426
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.08 E-value=5.9 Score=33.92 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=48.9
Q ss_pred HHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926 430 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV 489 (512)
Q Consensus 430 ~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~ 489 (512)
+.++++|..|+++.+....+. -....|.|.+.++|.+|-. ++..+.+..++|=|+.+.+
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 567899999999999877664 4578999999999999965 5777888899999988443
No 427
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=74.00 E-value=1.8 Score=47.39 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=35.7
Q ss_pred CCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q psy3926 251 DLDLYGLLELTIDCSE--QDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEV 304 (512)
Q Consensus 251 ~~d~YeiLgv~~~As~--~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYev 304 (512)
..|||.+||++.+... .+|++|||+|++..+++ .+++..+..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 5579999999766655 67999999999966544 3678888888765
No 428
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=73.59 E-value=2.1 Score=36.48 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
.+--.+|..+|+.||.| .|.=-.-.+|+|+|.+.+.|..|+..
T Consensus 16 ewKt~Di~~lFs~fggv---~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 16 EWKTSDLYQLFSAFGNI---QISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp TCCHHHHHHHTTTSEEE---EEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hhhhHHHHHHHhccCCE---EEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 47788999999999955 33211236999999999999999863
No 429
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=69.84 E-value=8.4 Score=33.70 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=40.2
Q ss_pred CCCHH---HHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCC
Q psy3926 38 VYTRE---SLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 90 (512)
Q Consensus 38 ~Y~~~---~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~n 90 (512)
||..+ .+...|++||+|+..... ....---|-|.+..+|..|+ .+.|..=+
T Consensus 31 GFp~~~~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL-~kNG~ii~ 84 (119)
T 1wwh_A 31 GFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKAL-SKDGRIFG 84 (119)
T ss_dssp CCCGGGHHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCHHHHHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHH-HhCCeEec
Confidence 66654 566789999999999883 34567889999999999999 66776544
No 430
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=59.38 E-value=5.1 Score=35.72 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=42.5
Q ss_pred CHHHHHHHhhccCCeeE-EEEcc------------C------CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926 428 TRESLTKIFSKYGKINI-LVISP------------K------KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP 487 (512)
Q Consensus 428 te~~L~~iFs~fG~I~~-V~i~~------------~------kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~ 487 (512)
....+-..|++||.|.. +.+.. + -.+..-|.|.+..+|.+|++. +.-+.+..+-|.+..+
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCH
Confidence 45667788999999966 22221 1 145678999999999999974 4555556778887753
No 431
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=50.01 E-value=2.4e+02 Score=30.74 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcc--ChhhhhHHHHHHH
Q psy3926 295 FHLLSKAIEVLL--DKSARAAYDSVIR 319 (512)
Q Consensus 295 F~~I~~AYevLs--Dp~~R~~YD~~~~ 319 (512)
...|...|..-. -|.+-..+..++.
T Consensus 440 ~~~~~~~Y~~~~~kg~~~~~vl~~fl~ 466 (592)
T 1f5n_A 440 LQDLKKKYYEEPRKGIQAEEILQTYLK 466 (592)
T ss_dssp HHHHHHHHHHSSCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 344555665543 3333344444443
No 432
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.31 E-value=41 Score=28.63 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926 41 RESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN 98 (512)
Q Consensus 41 ~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~ 98 (512)
++.++.+|..|+++.....-+. =+...|-|.+.++|..|-.. +.-....+|+|=+-.
T Consensus 24 k~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 24 RAKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 3678999999999998764322 23789999999999988753 222223355555443
No 433
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.47 E-value=3.3e+02 Score=29.64 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHhhc
Q psy3926 38 VYTRESLTKIFSKY 51 (512)
Q Consensus 38 ~Y~~~~l~~~f~ky 51 (512)
..+.+.|. ++.+.
T Consensus 22 ~~~~eal~-~L~~i 34 (592)
T 1f5n_A 22 MANPEALK-ILSAI 34 (592)
T ss_dssp EECHHHHH-HHHTC
T ss_pred EECHHHHH-HHHhc
Confidence 36777775 44544
No 434
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=29.55 E-value=62 Score=34.51 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCC-cEEe
Q psy3926 38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCP-LTLN 95 (512)
Q Consensus 38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nP-l~~~ 95 (512)
+.....|.++|+.||.|.-..|... +|+|.|.+.++|..|+ ..... +| ++|.
T Consensus 450 ~~~~~~i~~~fs~fg~v~V~widdt---~a~V~~~~~~~a~~~l-~~~~~--~~~~~i~ 502 (507)
T 3d45_A 450 EWKTSDLYQLFSAFGNIQISWIDDT---SAFVSLSQPEQVQIAV-NTSKY--AESYRIQ 502 (507)
T ss_dssp TCCHHHHHHHGGGGCCCEEEECSSS---EEEEECSCHHHHHHHH-HHHTT--CSSCEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEcCC---eEEEEECCHHHHHHHH-HHHHh--CCceEEE
Confidence 3567899999999997754455544 8999999999999888 44442 34 6665
No 435
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=27.10 E-value=52 Score=29.20 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCCHH---HHHHHHhhcCcccEEE-ecc-----------CC-------CceEEEEeccHHHHHHHHHhhhCCCCCC--cE
Q psy3926 38 VYTRE---SLTKIFSKYGKINILV-ISP-----------KK-------RGSALLEFEHADSARRAKLYELGLPNCP--LT 93 (512)
Q Consensus 38 ~Y~~~---~l~~~f~kyG~v~~~v-~~~-----------k~-------~g~A~vef~~~~aa~~a~~~e~g~~~nP--l~ 93 (512)
||.++ .+...|++||+|..-+ +.. .+ .+-.=|-|++..+|..|+ .+.|..=+- +-
T Consensus 14 GFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii~G~mIG 92 (132)
T 3p3d_A 14 GYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVFNGVLLG 92 (132)
T ss_dssp CCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEETTEECE
T ss_pred ecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEE
Confidence 67655 4567899999998743 211 11 233479999999999999 566653322 44
Q ss_pred EeecC
Q psy3926 94 LNYLN 98 (512)
Q Consensus 94 ~~~l~ 98 (512)
|.|+.
T Consensus 93 V~Py~ 97 (132)
T 3p3d_A 93 VIPYT 97 (132)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 45554
No 436
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=26.83 E-value=99 Score=32.95 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=34.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~ 471 (512)
.+...+|.++|+.||.| .|.-+. ..+|+|.|.+.+.|..+++.
T Consensus 450 ~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 450 EWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp TCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHH
Confidence 36789999999999976 444333 35899999999999988864
No 437
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.72 E-value=3.7e+02 Score=24.59 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhHHHH
Q psy3926 359 VNKSEEEILQQEIDRLRKEGSIRLQ 383 (512)
Q Consensus 359 ~~~~~~e~~~~eierLRee~~r~re 383 (512)
-++.+-+++.+++..||.+....+-
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777778888777655443
No 438
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=26.30 E-value=1.8e+02 Score=23.89 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3926 326 IRNSKLDATRKKFKEDLERREKEAEN 351 (512)
Q Consensus 326 ~r~~~~~~~rrk~~eeLe~rE~e~~~ 351 (512)
.+.+.+..-|++|.++|.+....++.
T Consensus 44 ~RQEAl~aaRlRMQEeldAqAe~~ke 69 (89)
T 2q2f_A 44 KRQEALAAARLKMQEELNAQVEKHKE 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899888887776653
No 439
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=24.39 E-value=1.9e+02 Score=23.69 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=35.6
Q ss_pred CCCHHHHHHHhhccCCeeEEEEcc-C------CCceEEEEEcCHHHHHHHHH
Q psy3926 426 VYTRESLTKIFSKYGKINILVISP-K------KRGSALLEFEHADSARRAKL 470 (512)
Q Consensus 426 ~~te~~L~~iFs~fG~I~~V~i~~-~------kkg~A~V~F~s~~~A~~Ai~ 470 (512)
++||+.+.+.++.++.++-..... + ..+.|+|.|.+.+++..-..
T Consensus 12 ~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 12 TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 699999999999998876655443 2 26889999999888776664
No 440
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.12 E-value=29 Score=29.40 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcC
Q psy3926 41 RESLTKIFSKYG 52 (512)
Q Consensus 41 ~~~l~~~f~kyG 52 (512)
=..|+++|+|||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 357899999999
No 441
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.13 E-value=3.6e+02 Score=22.75 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q psy3926 365 EILQQEIDRLRKEGSIRLQEE 385 (512)
Q Consensus 365 e~~~~eierLRee~~r~ree~ 385 (512)
+.++.++++|+.+..+.+.+.
T Consensus 68 ~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999888777543
No 442
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.20 E-value=3.4e+02 Score=22.13 Aligned_cols=61 Identities=26% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHccChhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHh
Q psy3926 299 SKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEG 378 (512)
Q Consensus 299 ~~AYevLsDp~~R~~YD~~~~~~~~~~~r~~~~~~~rrk~~eeLe~rE~e~~~~~~~~~k~~~~~~e~~~~eierLRee~ 378 (512)
.+||+.++.+.--..|-+.+..+ +|..+.+.|++-+.-.+. -+.++.+|.+|+++.
T Consensus 6 ~ea~dL~~~e~pse~YWk~lAE~------------Rr~AL~eaL~EN~~Lh~~------------ie~~~eEi~~Lk~en 61 (83)
T 1wlq_A 6 QEAFDLISKENPSSQYWKEVAEQ------------RRKALYEALKENEKLHKE------------IEQKDSEIARLRKEN 61 (83)
T ss_dssp --------CCCTTCTHHHHHHHH------------HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 57888887666677777666543 233444444444332221 124566777777776
Q ss_pred hHHHH
Q psy3926 379 SIRLQ 383 (512)
Q Consensus 379 ~r~re 383 (512)
.+.++
T Consensus 62 ~~L~e 66 (83)
T 1wlq_A 62 KDLAE 66 (83)
T ss_dssp HHTHH
T ss_pred HHHHH
Confidence 65543
No 443
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=20.47 E-value=2.8e+02 Score=22.03 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926 271 SAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR 319 (512)
Q Consensus 271 kAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 319 (512)
+.+|...+.-||+... .+.-..|.+.|..|++.++....+....
T Consensus 20 ~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~eeK~~Y~~~A~~ 63 (92)
T 2crj_A 20 NERREQIRTRHPDLPF-----PEITKMLGAEWSKLQPAEKQRYLDEAEK 63 (92)
T ss_dssp HHHHHHHHHHCTTCCH-----HHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666677898653 4678899999999998877655555443
Done!